organism: uncultured bacterium
attributes.tag: ENA first public
attributes.value: 2025-06-12
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR12893484_metabat2_15
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: metaspades_v3.15.5
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: marine
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2016-06-29
attributes.tag: completeness score
attributes.value: 96.78
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 0.71
attributes.tag: environmental medium
attributes.value: marine sediment
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: 11.80100000
attributes.tag: geographic location (longitude)
attributes.value: 142.11700000
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sediment metagenome
attributes.tag: local environmental context
attributes.value: hadal zone
attributes.tag: metagenomic source
attributes.value: sediment metagenome
attributes.tag: project name
attributes.value: In order to study the metabolic potential of microbes in trench sediments, we sequenced metagenomes and metatranscriptomes of the Challenger Deep sediment samples. Furthermore, we reconstructed microbial genomes from the generated sequencing data and studied the ecological role of the microbes.
attributes.tag: sample derived from
attributes.value: SAMN16252675
attributes.tag: sample name
attributes.value: SRR12893484_metabat2_15
attributes.tag: scientific_name
attributes.value: uncultured bacterium
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach