organism: rat gut metagenome
attributes.tag: ENA first public
attributes.value: 2025-10-30
attributes.tag: INSDC center name
attributes.value: UCSDMI
attributes.tag: INSDC status
attributes.value: public
attributes.tag: anonymized_name
attributes.value: not applicable
attributes.tag: bad_rat
attributes.value: FALSE
attributes.tag: barcode_16s
attributes.value: CTGTTACAGCGA
attributes.tag: batch
attributes.value: Batch10
attributes.tag: batchnumber
attributes.value: not applicable
attributes.tag: cage
attributes.value: K-43
attributes.tag: cage_density
attributes.value: 2
attributes.tag: ccc_box
attributes.value: not provided
attributes.tag: cecum_box
attributes.value: NY-CC57
attributes.tag: center_name
attributes.value: UCSDMI
attributes.tag: center_name_16s
attributes.value: UCSDMI
attributes.tag: center_project_name
attributes.value: Heterogeneous Stock rats
attributes.tag: center_project_name_16s
attributes.value: Heterogeneous Stock rats
attributes.tag: clean_ids_16s
attributes.value: 00077E8B10
attributes.tag: collection date
attributes.value: 2017-06-30
attributes.tag: collection_date
attributes.value: 2017-06-30
attributes.tag: collection_timestamp
attributes.value: 2017-06-30
attributes.tag: color
attributes.value: brown
attributes.tag: compound_name_16s
attributes.value: 11479_prep_6462_20191016-101040_11479.00077E8B10
attributes.tag: country
attributes.value: USA
attributes.tag: crf_mi_box
attributes.value: not provided
attributes.tag: crf_ny_box
attributes.value: box2
attributes.tag: dam
attributes.value: HSF02214
attributes.tag: datetime_dissected
attributes.value: 2017-06-30 14:11:00
attributes.tag: datetime_fasting_started
attributes.value: 2017-06-29 21:15:00
attributes.tag: datetime_glucose_measured_at_dissection
attributes.value: 2017-06-30 14:07:00
attributes.tag: deblur_biom_id
attributes.value: 175553
attributes.tag: deblur_rooname
attributes.value: 175553.11479.00077E8B10
attributes.tag: delay_discounting_box
attributes.value: C1
attributes.tag: dna_extracted
attributes.value: not provided
attributes.tag: dob
attributes.value: 2016-12-20
attributes.tag: dow
attributes.value: 2017-01-10
attributes.tag: duplicated_16s
attributes.value: NA
attributes.tag: earpunchlcn
attributes.value: LTRB
attributes.tag: elevation
attributes.value: 600
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal (non-saline)
attributes.tag: empo_3
attributes.value: Animal proximal gut (non-saline)
attributes.tag: empo_4
attributes.value: Animal proximal gut (non-saline)
attributes.tag: env_biome
attributes.value: urban biome
attributes.tag: env_feature
attributes.value: animal-associated habitat
attributes.tag: env_material
attributes.value: cecum
attributes.tag: env_package
attributes.value: host-associated
attributes.tag: extraction_robot_16s
attributes.value: Carmen_KF4
attributes.tag: extractionkit_lot_16s
attributes.value: 160033450
attributes.tag: full_ids_16s
attributes.value: 70124.11479.00077E8B10
attributes.tag: generation
attributes.value: 78
attributes.tag: genotyped
attributes.value: TRUE
attributes.tag: geo_loc_name
attributes.value: USA:NY:Buffalo
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: glucose_at_dissection
attributes.value: 80
attributes.tag: glucose_at_weaning
attributes.value: 95
attributes.tag: glucose_units
attributes.value: mg_dl
attributes.tag: has_dupl_16s
attributes.value: no
attributes.tag: host_age
attributes.value: 192.84097
attributes.tag: host_age_units
attributes.value: days
attributes.tag: host_body_habitat
attributes.value: UBERON:gastro-intestinal system
attributes.tag: host_body_product
attributes.value: UBERON:lumen of gut
attributes.tag: host_body_site
attributes.value: UBERON:cecum
attributes.tag: host_common_name
attributes.value: rat
attributes.tag: host_height
attributes.value: not collected
attributes.tag: host_height_units
attributes.value: not applicable
attributes.tag: host_life_stage
attributes.value: not provided
attributes.tag: host_scientific_name
attributes.value: Rattus norvegicus
attributes.tag: host_subject_id
attributes.value: 00077E8B10
attributes.tag: host_taxid
attributes.value: 10116
attributes.tag: host_weight
attributes.value: 237
attributes.tag: host_weight_units
attributes.value: g
attributes.tag: in_16s_prep
attributes.value: YES
attributes.tag: instrument_model
attributes.value: Illumina MiSeq
attributes.tag: instrument_model_16s
attributes.value: Illumina MiSeq
attributes.tag: latitude
attributes.value: 42.89
attributes.tag: length_units
attributes.value: cm
attributes.tag: length_w_tail
attributes.value: 38.5
attributes.tag: length_wo_tail
attributes.value: 20.5
attributes.tag: library_construction_protocol
attributes.value: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
attributes.tag: library_construction_protocol_16s
attributes.value: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
attributes.tag: linker_16s
attributes.value: GT
attributes.tag: litternumber
attributes.value: 10
attributes.tag: littersize
attributes.value: 8
attributes.tag: locomotor_testing_box
attributes.value: E1
attributes.tag: longitude
attributes.value: -78.88
attributes.tag: losttransp
attributes.value: not applicable
attributes.tag: mastermix_lot_16s
attributes.value: 453873
attributes.tag: metabolomicsed
attributes.value: NO
attributes.tag: nb_seqs_16s
attributes.value: 19710
attributes.tag: notes_cecum
attributes.value: not_thawed
attributes.tag: novelty_seeking_box
attributes.value: not provided
attributes.tag: orig_name_16s
attributes.value: 00077E8B10
attributes.tag: otu_biom_id_16s
attributes.value: 70124
attributes.tag: pavca_mi_box
attributes.value: not provided
attributes.tag: pavca_ny_box
attributes.value: box2
attributes.tag: pcr_primers
attributes.value: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
attributes.tag: pcr_primers_16s
attributes.value: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
attributes.tag: phenotyping_center
attributes.value: NY
attributes.tag: physical_specimen_location
attributes.value: Baud lab, Centre for Genomic Regulation, Barcelona, Spain
attributes.tag: physical_specimen_remaining
attributes.value: not provided
attributes.tag: platform
attributes.value: Illumina
attributes.tag: platform_16s
attributes.value: Illumina
attributes.tag: plating_16s
attributes.value: MB
attributes.tag: prep_name_16s
attributes.value: 11479_prep_6462_20191016-101040
attributes.tag: primer_16s
attributes.value: GTGTGYCAGCMGCCGCGGTAA
attributes.tag: primer_date
attributes.value: 73118
attributes.tag: primer_date_16s
attributes.value: 73118
attributes.tag: primer_plate
attributes.value: 8
attributes.tag: primer_plate_16s
attributes.value: 8
attributes.tag: processing_robot_16s
attributes.value: ROBE
attributes.tag: project_name_16s
attributes.value: Palmer Rats Winter2018
attributes.tag: qiita_prep_id_16s
attributes.value: 6462
attributes.tag: reaction_time_box
attributes.value: B9
attributes.tag: run_center
attributes.value: UCSDMI
attributes.tag: run_center_16s
attributes.value: UCSDMI
attributes.tag: run_date
attributes.value: 3/28/19
attributes.tag: run_date_16s
attributes.value: 3/28/19
attributes.tag: run_prefix_16s
attributes.value: Palmer_Rats_Winter_2018_7-8_Perez_Lopez_1_AGP_259-261_S1_L001
attributes.tag: runid_16s
attributes.value: 190328_M05314_0162_000000000-BLGCP
attributes.tag: sample name
attributes.value: ERS27120020
attributes.tag: sample_name_16s
attributes.value: 11479.00077E8B10
attributes.tag: sample_name_in_metadata_16s
attributes.value: 00077E8B10
attributes.tag: sample_name_metabo
attributes.value: not applicable
attributes.tag: sample_name_mg
attributes.value: not applicable
attributes.tag: sample_plate_16s
attributes.value: Palmer_Rats_Winter2018_Plate_8
attributes.tag: sample_type
attributes.value: cecum content
attributes.tag: scientific_name
attributes.value: rat gut metagenome
attributes.tag: sequenced_16s
attributes.value: YES
attributes.tag: sequenced_mg
attributes.value: NO
attributes.tag: sequencing_meth_16s
attributes.value: Sequencing by synthesis
attributes.tag: sequencing_method
attributes.value: Sequencing by synthesis
attributes.tag: sex
attributes.value: female
attributes.tag: shipment_to_phenotyping_center_date
attributes.value: 2017-01-24
attributes.tag: sire
attributes.value: HSM02238
attributes.tag: social_reinforcement_box
attributes.value: S3
attributes.tag: study
attributes.value: NY
attributes.tag: target_gene
attributes.value: 16S rRNA
attributes.tag: target_gene_16s
attributes.value: 16S rRNA
attributes.tag: target_subfragment
attributes.value: V4
attributes.tag: target_subfragment_16s
attributes.value: V4
attributes.tag: time_elapsed_removefood_dissection
attributes.value: 16.9333333333333
attributes.tag: time_elapsed_removefood_measure
attributes.value: 16.8666666666667
attributes.tag: tm1000_8_tool_16s
attributes.value: 216152F
attributes.tag: tm300_8_tool_16s
attributes.value: 208484Z
attributes.tag: tm50_8_tool_16s
attributes.value: 108364Z
attributes.tag: tn_cage
attributes.value: not provided
attributes.tag: tn_track
attributes.value: not provided
attributes.tag: tube_id
attributes.value: 00077E8B10
attributes.tag: unknown_rat
attributes.value: FALSE
attributes.tag: water_lot_16s
attributes.value: 2003606
attributes.tag: weaning_cagecard
attributes.value: 16-149-283
attributes.tag: weaning_cagelocation
attributes.value: 3-D7
attributes.tag: weaning_roomnumber
attributes.value: 630
attributes.tag: weaning_shippingbox
attributes.value: NY-B10-14
attributes.tag: weaning_suite
attributes.value: F
attributes.tag: weight_at_weaning
attributes.value: 33
attributes.tag: well_description_16s
attributes.value: Palmer_Rats_Winter2018_Plate_8_00077E8B10_D8
attributes.tag: well_id_16s
attributes.value: D8