organism: Alphaproteobacteria bacterium
attributes.tag: 16S recovered
attributes.value: Yes
attributes.tag: 16S recovery software
attributes.value: PROKKA (version 1.14.6)
attributes.tag: ENA first public
attributes.value: 2025-04-11
attributes.tag: GAL
attributes.value: Royal Botanic Garden Edinburgh
attributes.tag: GAL_sample_id
attributes.value: NOT PROVIDED
attributes.tag: INSDC center name
attributes.value: Tree of Life Programme
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: Minimap2 (version 2.24-r1122)
attributes.tag: Submitter Id
attributes.value: cafe8b3f-620b-4c02-a309-c4c0e5e77a93
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaMDBG (version 0.3)
attributes.tag: barcoding center
attributes.value: ROYAL BOTANIC GARDEN EDINBURGH
attributes.tag: binning parameters
attributes.value: coverage; graph
attributes.tag: binning software
attributes.value: MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
attributes.tag: broad-scale environmental context
attributes.value: aquatic biome
attributes.tag: collected_by
attributes.value: REBECCA YAHR | NATHAN CHRISMAS
attributes.tag: collecting institution
attributes.value: ROYAL BOTANIC GARDEN EDINBURGH | MARINE BIOLOGICAL ASSOCIATION
attributes.tag: collection date
attributes.value: 2023-07-18
attributes.tag: completeness score
attributes.value: 65.52
attributes.tag: completeness software
attributes.value: checkM (version 1.2.2); checkM_DB (release 2015-01-16)
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: elevation
attributes.value: 25
attributes.tag: environmental medium
attributes.value: adult lichen tissue
attributes.tag: geographic location (country and/or sea)
attributes.value: United Kingdom
attributes.tag: geographic location (latitude)
attributes.value: 57.63
attributes.tag: geographic location (longitude)
attributes.value: -5.35
attributes.tag: geographic location (region and locality)
attributes.value: West Ross and Cromarty |Kinlochewe, Beinn Eighe NNR, Coille na Glas Leitire pinewood
attributes.tag: habitat
attributes.value: on boulders and rocks in upland clear stream
attributes.tag: host life stage
attributes.value: vegetative structure
attributes.tag: host scientific name
attributes.value: Ephebe lanata
attributes.tag: host sex
attributes.value: other
attributes.tag: host taxid
attributes.value: 2886949
attributes.tag: identified_by
attributes.value: REBECCA YAHR
attributes.tag: identifier_affiliation
attributes.value: ROYAL BOTANIC GARDEN EDINBURGH
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Lichen: Ephebe lanata
attributes.tag: local environmental context
attributes.value: freshwater biome
attributes.tag: metagenomic source
attributes.value: lichen metagenome
attributes.tag: number of standard tRNAs extracted
attributes.value: 28
attributes.tag: organism part
attributes.value: WHOLE ORGANISM
attributes.tag: project name
attributes.value: DTOL
attributes.tag: sample collection device or method
attributes.value: Collected into paper packets, dissected under the microscope and flash frozen
attributes.tag: sample derived from
attributes.value: SAMEA117994037
attributes.tag: sample has part
attributes.value: SAMEA114764035
attributes.tag: sample name
attributes.value: cafe8b3f-620b-4c02-a309-c4c0e5e77a93
attributes.tag: scientific_name
attributes.value: Alphaproteobacteria bacterium
attributes.tag: sequencing method
attributes.value: Pacbio Sequel II
attributes.tag: specimen_id
attributes.value: EDTOL06348
attributes.tag: specimen_voucher
attributes.value: NOT_PROVIDED
attributes.tag: tRNA extraction software
attributes.value: PROKKA (version 1.14.6)
attributes.tag: taxonomic classification
attributes.value: GTDB-TK (version 2.4.0); GTDB (release 214)
attributes.tag: taxonomic identity marker
attributes.value: taxonomic novelty determined using RED
attributes.tag: tolid
attributes.value: glEphLana1.Alphaproteobacteria_5
attributes.tag: voucher institution url
attributes.value: https://ror.org/0349vqz63