organism: metagenome
attributes.tag: ENA first public
attributes.value: 2024-05-09
attributes.tag: External Id
attributes.value: SAMEA114356019
attributes.tag: INSDC center name
attributes.value: The Roslin Institute (University of Edinburgh)
attributes.tag: INSDC last update
attributes.value: 2023-09-12T13:29:02Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: metabat2_6737_HOM_CTRL_metaflye.711
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaFlye
attributes.tag: binning parameters
attributes.value: flye --meta --pacbio-hifi
attributes.tag: binning software
attributes.value: MetaBAT 2
attributes.tag: broad-scale environmental context
attributes.value: Gallus gallus
attributes.tag: collection date
attributes.value: 2021-09-15
attributes.tag: completeness score
attributes.value: 14.59
attributes.tag: completeness software
attributes.value: CheckM2
attributes.tag: contamination score
attributes.value: 0.03
attributes.tag: environmental medium
attributes.value: Caecal contents
attributes.tag: geographic location (country and/or sea)
attributes.value: United Kingdom
attributes.tag: geographic location (latitude)
attributes.value: 55.86
attributes.tag: geographic location (longitude)
attributes.value: -3.2
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: isolation_source
attributes.value: Caecal contents from a chicken (Gallus gallus)
attributes.tag: local environmental context
attributes.value: Gastrointestinal tract microbiota
attributes.tag: metagenomic source
attributes.value: chicken gut metagenome
attributes.tag: project name
attributes.value: Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
attributes.tag: sample derived from
attributes.value: ERS16138921
attributes.tag: sample name
attributes.value: metabat2_6737_HOM_CTRL_metaflye.711
attributes.tag: scientific_name
attributes.value: metagenome
attributes.tag: sequencing method
attributes.value: Sequel IIe
attributes.tag: taxonomic identity marker
attributes.value: None