organism: uncultured Mediterraneibacter sp.
attributes.tag: ENA first public
attributes.value: 2025-11-28
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERR2193814_maxbin2_1
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPADES_v3.15.5
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: poultry
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2016-02-02
attributes.tag: completeness score
attributes.value: 55.98
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 4.15
attributes.tag: environmental medium
attributes.value: chicken gut
attributes.tag: geographic location (country and/or sea)
attributes.value: India
attributes.tag: geographic location (latitude)
attributes.value: 21.34432000
attributes.tag: geographic location (longitude)
attributes.value: 70.25832000
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: chicken gut metagenome
attributes.tag: local environmental context
attributes.value: chicken
attributes.tag: metagenomic source
attributes.value: chicken gut metagenome
attributes.tag: project name
attributes.value: There is rich genetic diversity in India's native poultry breeds, and the hybrid exotic lines often used in Indian commercial production are distinct from the majority of poultry reared in the UK. The prevalence and dynamics of gastrointestinal infection at farm-level has a direct bearing on economic risk to individual farmers and contributes to overall global concerns of food security and food safety.Changes to diet, use of vaccines or antimicrobials, and flock-level interventions such as 'thinning', can have profound effects on intestinal health and the evolution and spread of disease-causing microbes and may be amplified by genetic variation in host and microbe populations. Whilst major advances in genomics and genotyping of commercial poultry lines is facilitating the identification of loci linked to susceptibility or resistance, the impact of host and pathogen diversity on disease and production outcomes remains largely unexplored.
attributes.tag: sample derived from
attributes.value: SAMEA104378582
attributes.tag: sample name
attributes.value: ERR2193814_maxbin2_1
attributes.tag: scientific_name
attributes.value: uncultured Mediterraneibacter sp.
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach