title: Fecal sample of NIH-Heterogeneous Stock (HS) rat 0007D611E5
organism: rat gut metagenome
description: Fecal metagenome of NIH-Heterogeneous Stock (HS) rat 0007D611E5
attributes.tag: ENA first public
attributes.value: 2025-08-31
attributes.tag: External Id
attributes.value: SAMEA114318450
attributes.tag: Flow Cell
attributes.value: 3
attributes.tag: INSDC center name
attributes.value: Centre for Genomic Regulation
attributes.tag: INSDC last update
attributes.value: 2023-11-14T12:15:04Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Initial concentration Picogreen (ng/ul)
attributes.value: 62.5
attributes.tag: Submitter Id
attributes.value: sample_F0007D611E5
attributes.tag: Wells
attributes.value: A10
attributes.tag: bad_rat
attributes.value: FALSE
attributes.tag: barcode
attributes.value: 07109AAE
attributes.tag: batch
attributes.value: Batch24
attributes.tag: batchnumber
attributes.value: not applicable
attributes.tag: broad-scale environmental context
attributes.value: urban biome [ENVO:01000249]
attributes.tag: cage_density
attributes.value: 3
attributes.tag: ccc_box
attributes.value: box3
attributes.tag: collection date
attributes.value: 2018-06-06
attributes.tag: crf_MI_box
attributes.value: crf_MI_box11
attributes.tag: dam
attributes.value: HSF02647
attributes.tag: datetime_fasting_started
attributes.value: 2018-06-05 18:00:00
attributes.tag: datetime_glucose_measured_at_dissection
attributes.value: 2018-06-06 13:55:00
attributes.tag: dob
attributes.value: 2018-03-06
attributes.tag: dow
attributes.value: 2018-03-27
attributes.tag: earpunchlcn
attributes.value: LM
attributes.tag: elevation
attributes.value: 840
attributes.tag: environmental medium
attributes.value: fecal material [ENVO_00002003]
attributes.tag: failed_lib
attributes.value: FALSE
attributes.tag: generation
attributes.value: 82
attributes.tag: genotyped
attributes.value: TRUE
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 42.28
attributes.tag: geographic location (longitude)
attributes.value: -83.74
attributes.tag: glucose_at_dissection
attributes.value: 97
attributes.tag: glucose_at_weaning
attributes.value: 109
attributes.tag: host age
attributes.value: 92.84097
attributes.tag: host body habitat
attributes.value: gastro-intestinal system [UBERON:0005409]
attributes.tag: host body product
attributes.value: Lumen of intestine [fma:fma14586]|Intestinal mucosa [fma:fma15695]
attributes.tag: host body site
attributes.value: Feces [fma:fma64183]
attributes.tag: host color
attributes.value: brownhood
attributes.tag: host common name
attributes.value: rat
attributes.tag: host length
attributes.value: 40.5
attributes.tag: host life stage
attributes.value: adult
attributes.tag: host scientific name
attributes.value: Rattus norvegicus
attributes.tag: host sex
attributes.value: male
attributes.tag: host subject id
attributes.value: 0007D611E5
attributes.tag: host taxid
attributes.value: 10116
attributes.tag: host total mass
attributes.value: 290
attributes.tag: in_16s_prep
attributes.value: YES
attributes.tag: length_wo_tail
attributes.value: 22.5
attributes.tag: library molarity (nM)
attributes.value: 43.3
attributes.tag: library reads sequenced
attributes.value: 27531476
attributes.tag: library size (bp)
attributes.value: 615
attributes.tag: litternumber
attributes.value: 5
attributes.tag: littersize
attributes.value: 6
attributes.tag: local environmental context
attributes.value: large intestine [UBERON:0000059]
attributes.tag: metabolomicsed
attributes.value: NO
attributes.tag: name_round8_genotypes
attributes.value: 0007D611E5
attributes.tag: negative control type
attributes.value: Empty well before DNA extraction
attributes.tag: novelty_seeking_box
attributes.value: box3
attributes.tag: pavca_MI_box
attributes.value: box11
attributes.tag: pcr primers
attributes.value: AGATAGGCGA-TATGCTTGCG
attributes.tag: phenotyping_center
attributes.value: MI
attributes.tag: plate
attributes.value: 09
attributes.tag: positive control type
attributes.value: ZymoBiomics Gut Microbiome Standard, ZYMO Research catalogue #D331
attributes.tag: project name
attributes.value: Deep shotgun sequencing of the cecal and fecal microbiomes of outbred Heterogeneous Stock rats
attributes.tag: sample name
attributes.value: sample_F0007D611E5
attributes.tag: sample_name_16S
attributes.value: 11479.0007D611E5
attributes.tag: scientific_name
attributes.value: rat gut metagenome
attributes.tag: sequenced_16s
attributes.value: YES
attributes.tag: sequenced_mg
attributes.value: NO
attributes.tag: sequencing method
attributes.value: OBI:0002630
attributes.tag: shipment_to_phenotyping_center_date
attributes.value: 2018-04-17
attributes.tag: sire
attributes.value: HSM02642
attributes.tag: study
attributes.value: MI
attributes.tag: time_elapsed_removeFood_dissection
attributes.value: 20.1833333333333
attributes.tag: time_elapsed_removeFood_measure
attributes.value: 19.9166666666667
attributes.tag: tissue_type
attributes.value: F
attributes.tag: unknown_rat
attributes.value: FALSE
attributes.tag: weaning_cagecard
attributes.value: 18-102-826
attributes.tag: weaning_cagelocation
attributes.value: 3-B3
attributes.tag: weaning_roomnumber
attributes.value: 630
attributes.tag: weaning_shippingbox
attributes.value: MI-B24-1
attributes.tag: weaning_suite
attributes.value: F
attributes.tag: weight_at_weaning
attributes.value: 45