title: Metagenome-assembled genome: SRR1714142_binner12_Refined_6
organism: uncultured Pseudoalteromonas sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1714142 of study SRP051172.
attributes.tag: ENA first public
attributes.value: 2025-07-28
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR1714142_binner12_Refined_6
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: megahit_v1.2.9
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: marine sediments
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2012-07-26
attributes.tag: completeness score
attributes.value: 99.95
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 0.4
attributes.tag: environmental medium
attributes.value: sinking marine particle
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: 22.67700000
attributes.tag: geographic location (longitude)
attributes.value: -158.88100000
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine sediment metagenome
attributes.tag: local environmental context
attributes.value: subtropical gyre
attributes.tag: metagenomic source
attributes.value: marine sediment metagenome
attributes.tag: project name
attributes.value: This study explores the taxonomic and metabolic diversity of microbes associated with sinking particles in the North Pacific Subtropical Gyre. Marine particles are hotspots of microbial activity, yet the microbial taxa and biochemical processes involved in carbon and energy cycling on sinking particles are poorly understood. Metagenomes generated in this study revealed new insights into the important taxa and metabolisms involved in microbial processing of marine particles.
attributes.tag: sample derived from
attributes.value: SAMN03264846
attributes.tag: sample name
attributes.value: SRR1714142_binner12_Refined_6
attributes.tag: scientific_name
attributes.value: uncultured Pseudoalteromonas sp.
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach