title: Metagenome-assembled genome: SRR28289115_metabat2_3
organism: uncultured Hyphomicrobiales bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28289115 of study SRP494495.
attributes.tag: ENA first public
attributes.value: 2025-07-28
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR28289115_metabat2_3
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaspades_v3.15.5
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: soil
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 73.87
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 1.92
attributes.tag: environmental medium
attributes.value: tomato
attributes.tag: geographic location (country and/or sea)
attributes.value: India
attributes.tag: geographic location (latitude)
attributes.value: missing: third party data
attributes.tag: geographic location (longitude)
attributes.value: missing: third party data
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: rhizosphere metagenome
attributes.tag: local environmental context
attributes.value: rhizosphere
attributes.tag: metagenomic source
attributes.value: rhizosphere metagenome
attributes.tag: project name
attributes.value: The study was carried out to explore the diversity of microorganisms present in the organic fields of Shimla, in comparison to bulk soil and soil under conventional farming practice. Different plants, namely tomato, chilli and apple farms were targeted for sample collection and analysis for the present study.
attributes.tag: sample derived from
attributes.value: SAMN39504437
attributes.tag: sample name
attributes.value: SRR28289115_metabat2_3
attributes.tag: scientific_name
attributes.value: uncultured Hyphomicrobiales bacterium
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach