organism: Arabidopsis thaliana
attributes.tag: ENA first public
attributes.value: 2026-02-11
attributes.tag: INSDC status
attributes.value: public
attributes.tag: age
attributes.value: 2 weeks old
attributes.tag: biological material ID
attributes.value: Col0_R2
attributes.tag: biological material altitude
attributes.value: 112m
attributes.tag: biological material coordinates uncertainty
attributes.value: not applicable
attributes.tag: biological material geographic location
attributes.value: Germany
attributes.tag: biological material latitude
attributes.value: 51,816
attributes.tag: biological material longitude
attributes.value: 11,283
attributes.tag: biological material ploidy
attributes.value: diploid
attributes.tag: checklist
attributes.value: BSDC00002
attributes.tag: collection date
attributes.value: 2024-12-23
attributes.tag: genus
attributes.value: Arabidopsis
attributes.tag: geographic location (country and/or sea)
attributes.value: Germany
attributes.tag: growth facility
attributes.value: growth chamber
attributes.tag: library type
attributes.value: RNAseq
attributes.tag: material source altitude
attributes.value: 112m
attributes.tag: material source description
attributes.value: not applicable
attributes.tag: material source geographic location
attributes.value: Germany
attributes.tag: material source latitude
attributes.value: 51,816
attributes.tag: material source longitude
attributes.value: 11,283
attributes.tag: plant anatomical entity
attributes.value: Seedling
attributes.tag: plant structure development stage
attributes.value: seedling development stage
attributes.tag: project name
attributes.value: Arabidopsis Epichrom
attributes.tag: sample ID
attributes.value: IPK_LIMS:3400001
attributes.tag: sample description
attributes.value: To evaluate the effect of chromosome fusions on gene expression, we performed RNA-seq analysis of the F8 and T8 lines and compared them with the respective wild-type plants, Col-0 and Ku70. For this, seeds were surface-sterilized and grown on MS medium under controlled conditions in a growth chamber at 22 °C with a 16 h light / 8 h dark photoperiod for two weeks. Whole seedlings were then harvested and ground in liquid nitrogen. A total of 100 mg of ground tissue was used for RNA extraction.
attributes.tag: sample name
attributes.value: ColK_R2
attributes.tag: species
attributes.value: thaliana