organism: uncultured Sphingobium sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR25996619 of study SRP459440.
attributes.tag: ENA first public
attributes.value: 2025-08-05
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR25996619_binner123_Refined_17
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaspades_v3.15.5
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: soil
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2021-08-23
attributes.tag: completeness score
attributes.value: 99.95
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 0.09
attributes.tag: environmental medium
attributes.value: maize
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: 47.27000000
attributes.tag: geographic location (longitude)
attributes.value: 126.41000000
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: rhizosphere metagenome
attributes.tag: local environmental context
attributes.value: rhizosphere
attributes.tag: metagenomic source
attributes.value: rhizosphere metagenome
attributes.tag: project name
attributes.value: We studied microbial communities in maize root compartments (bulk soil, rhizosphere soil, root endophyte) from an experiment with fertilization (control chemical fertilizer chemical fertilizer and straw amendments) and cropping (continuous and rotational cropping) treatments in Northeast China.
attributes.tag: sample derived from
attributes.value: SAMN37343969
attributes.tag: sample name
attributes.value: SRR25996619_binner123_Refined_17
attributes.tag: scientific_name
attributes.value: uncultured Sphingobium sp.
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach