organism: Candidatus Pelagibacterales bacterium
description: Allofontibacter temperatus assembled from Lake Zurich, Switzerland
attributes.tag: ENA first public
attributes.value: 2025-04-04
attributes.tag: INSDC center name
attributes.value: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ZE-13nov19-LR-1
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: MEGAHIT
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT, MetaBAT2, MaxBin
attributes.tag: broad-scale environmental context
attributes.value: freshwater biome
attributes.tag: collection date
attributes.value: 2019-11-13
attributes.tag: completeness score
attributes.value: 95.18
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 1.2
attributes.tag: environmental medium
attributes.value: natural lake
attributes.tag: geographic location (country and/or sea)
attributes.value: Switzerland
attributes.tag: geographic location (latitude)
attributes.value: 47.30514
attributes.tag: geographic location (longitude)
attributes.value: 8.573528
attributes.tag: isolation_source
attributes.value: Lake Zurich
attributes.tag: local environmental context
attributes.value: freshwater lake
attributes.tag: metagenomic source
attributes.value: lake water metagenome
attributes.tag: project name
attributes.value: PRJEB35770
attributes.tag: sample derived from
attributes.value: ERS6344560
attributes.tag: sample name
attributes.value: ZE-13nov19-LR-1
attributes.tag: scientific_name
attributes.value: Candidatus Pelagibacterales bacterium
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach