title: Metagenome-assembled genome: SRP107338_co1_43
organism: uncultured Chryseobacterium sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5576004,SRR5576005 of study SRP107338.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP107338_co1_43
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 86.75
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.98
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 42.06
attributes.tag: geographic location (longitude)
attributes.value: -87.68
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: bioreactor metagenome
attributes.tag: local environmental context
attributes.value: bioreactor biome
attributes.tag: metagenomic source
attributes.value: bioreactor metagenome
attributes.tag: project name
attributes.value: This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we've shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
attributes.tag: sample derived from
attributes.value: SAMN06957055,SAMN06957054
attributes.tag: sample name
attributes.value: SRP107338_co1_43
attributes.tag: scientific_name
attributes.value: uncultured Chryseobacterium sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach