title: Metagenome-assembled genome: binchicken_co180_8
organism: uncultured Polaribacter sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4352714,ERR4352721 of study ERP121700.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co180_8
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 76.69
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.22
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: North Sea
attributes.tag: geographic location (latitude)
attributes.value: 54.19
attributes.tag: geographic location (longitude)
attributes.value: 7.9
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine metagenome
attributes.tag: local environmental context
attributes.value: marine biome
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: Metagenomic sequencing of surface seawater samples collected during the spring phytoplankton bloom at Helgoland in the year 2018. Plankton samples were collected via sequential filtration on filters with three pore sizes, producing three size fractions. These correspond to the fraction greater than 10 µm in size, the fraction 3-10 µm in size, and the fraction 0.2-3 µm in size. Sequencing was done on the Illumina HiSeq 2500 platform and 2x 250 base pair chemistry.
attributes.tag: sample derived from
attributes.value: SAMEA7060537,SAMEA7060538
attributes.tag: sample name
attributes.value: binchicken_co180_8
attributes.tag: scientific_name
attributes.value: uncultured Polaribacter sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach