title: Metagenome-assembled genome: binchicken_co291_110
organism: uncultured archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2021503,SRR5855498 of study ERP021493.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co291_110
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 84.63
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.02
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: hydrothermal vent metagenome
attributes.tag: local environmental context
attributes.value: hydrothermal vent biome
attributes.tag: metagenomic source
attributes.value: hydrothermal vent metagenome
attributes.tag: project name
attributes.value: This projects explores the functional diversity and activity of rocky subseafloor microbial communities in hydrothermal vent systems. Samples were collected in 2015 from three low temperature diffuse fluid vents at Axial seamount, located in the northeast Pacific Ocean. We also collected a background seawater sample away from the volcano caldera, at 1500m depth as well as within a hydrothermal plume above Anemone vent. Shotgun metagenomics and metatranscriptomics were performed on the three diffuse vent samples as well as the background and plume sample. This study helps to determine the genetic potential and expression patterns of the largely uncharacterized subseafloor microbial community and shows how these patterns change across the complicated biogeochemical gradients of hydrothermal vent systems.
attributes.tag: sample derived from
attributes.value: SAMEA101254168,SAMN07370770
attributes.tag: sample name
attributes.value: binchicken_co291_110
attributes.tag: scientific_name
attributes.value: uncultured archaeon
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach