title: Metagenome-assembled genome: SRP065251_co2_90
organism: uncultured Hyphomonas sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2835693,SRR2835694 of study SRP065251.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP065251_co2_90
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2011-10-31
attributes.tag: completeness score
attributes.value: 92.09
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 4.5
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Australia
attributes.tag: geographic location (latitude)
attributes.value: -34.007158
attributes.tag: geographic location (longitude)
attributes.value: 151.196613
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: plant metagenome
attributes.tag: local environmental context
attributes.value: plant biome
attributes.tag: metagenomic source
attributes.value: plant metagenome
attributes.tag: project name
attributes.value: Marine eukaryotes live in constant interaction with microorganisms that colonise their surfaces. The mechanisms that can drive the selection of those microbial communities are poorly understood. Metagenomes of microbial communities associated to the surfaces of different macroalgal and seagrass species, rocks and those present in the surrounding seawater were sequenced in order to compare their taxonomic composition and functionality using statistical analyses.
attributes.tag: sample derived from
attributes.value: SAMN04215154
attributes.tag: sample name
attributes.value: SRP065251_co2_90
attributes.tag: scientific_name
attributes.value: uncultured Hyphomonas sp.
attributes.tag: sequencing method
attributes.value: Illumina Genome Analyzer IIx
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach