title: Metagenome-assembled genome: SRP216583_co2_225
organism: uncultured Vicingus sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9849954,SRR9849955 of study SRP216583.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP216583_co2_225
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: 2012-10-19
attributes.tag: completeness score
attributes.value: 96.47
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.13
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: microbial mat metagenome
attributes.tag: local environmental context
attributes.value: microbial mat biome
attributes.tag: metagenomic source
attributes.value: microbial mat metagenome
attributes.tag: project name
attributes.value: This BioProject includes 16S 5-pass filtered raw reads from the PacBio, raw metagenome reads, and raw metatranscriptome reads, all obtained from Fe mats at hydrothermal vents from Loihi Seamount (Hawaii), Urashima Vent Field (Southern Mariana Trough), and from Rainbow, TAG, and Snake Pit (Mid-Atlantic Ridge).
attributes.tag: sample derived from
attributes.value: SAMN12330932,SAMN12330933
attributes.tag: sample name
attributes.value: SRP216583_co2_225
attributes.tag: scientific_name
attributes.value: uncultured Vicingus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach