title: Metagenome-assembled genome: SRP313737_co1_352
organism: uncultured Oscillospiraceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14160763,SRR14160765 of study SRP313737.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP313737_co1_352
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2018-03
attributes.tag: completeness score
attributes.value: 66.97
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.7
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: 32.62
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: Nine fecal metagenomes of captive Rhinopithecus roxellana, 9 fecal metagenomes of wild Rhinopithecus roxellana, and 10 fecal metagenomes of Macaca mulatta. Our aim was to determine whether the gut microbiota provided any help for R. roxellana in the adaptation to a captive environment.
attributes.tag: sample derived from
attributes.value: SAMN18524293,SAMN18524291
attributes.tag: sample name
attributes.value: SRP313737_co1_352
attributes.tag: scientific_name
attributes.value: uncultured Oscillospiraceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach