title: Metagenome-assembled genome: binchicken_co208_234
organism: uncultured Phycisphaeraceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1352915,ERR4674194 of study ERP014781.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co208_234
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.52
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.23
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine metagenome
attributes.tag: local environmental context
attributes.value: marine biome
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: We are addressing a critical and unresolved ecological question: When are community composition and biodiversity important for the provision of a particular ecosystem function and when are they not? We hypothesize that community composition and biodiversity are more important for rare ecosystem functions than for common ecosystem functions. If an ecosystem function is rare, then differences or changes in community composition could have profound effects on the biotransformation rate of that function. In contrast, if an ecosystem function is common, then differences or changes in community composition are unlikely to have an effect on that function.
attributes.tag: sample derived from
attributes.value: SAMEA3920718,SAMEA7392479
attributes.tag: sample name
attributes.value: binchicken_co208_234
attributes.tag: scientific_name
attributes.value: uncultured Phycisphaeraceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500,Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach