title: Metagenome-assembled genome: ERP110561_co1_18
organism: uncultured bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3265217,ERR3265218 of study ERP110561.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP110561_co1_18
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2015-11-20
attributes.tag: completeness score
attributes.value: 97.19
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 3.75
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 26.0112
attributes.tag: geographic location (longitude)
attributes.value: -80.1495
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sponge metagenome
attributes.tag: local environmental context
attributes.value: sponge biome
attributes.tag: metagenomic source
attributes.value: sponge metagenome
attributes.tag: project name
attributes.value: Cinachyrella keukenthali is quickly emerging as a model sponge. Its small size makes it ideal for laboratory sized aquaria and long-term experiments. It is also on the Global Invertebrate Genome Alliance's priority list for genome sequencing. Other experiments have also included a focused amplicon sequencing experiment wherein, two subtypes of Cinachyrella keukenthali may be present in the environment based on microbiome results and some of the ongoing efforts of the global sponge microbiome project. What is poorly understood is the functional potential of the sponge microbiota. We analysed two metagenomes of C. keukenthali to determine non-PCR biased taxonomic makeup, functional potential, metabonomic analysis, and an early look into the microeukaryotes that might be present in the sponge
attributes.tag: sample derived from
attributes.value: SAMEA5554618,SAMEA5554619
attributes.tag: sample name
attributes.value: ERP110561_co1_18
attributes.tag: scientific_name
attributes.value: uncultured bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach