title: Metagenome-assembled genome: SRP253650_co1_50
organism: uncultured Rhodobiaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11455656,SRR11455659 of study SRP253650.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP253650_co1_50
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2017-09-03
attributes.tag: completeness score
attributes.value: 75.63
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.32
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: 43.8942
attributes.tag: geographic location (longitude)
attributes.value: -63.076
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine metagenome
attributes.tag: local environmental context
attributes.value: marine biome
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: This dataset was collected during the expeditions 'Hudson2016-019', and 'MLB2017001' of the Canadian Coast Guard Ships (CCGS) Hudson and Martha L. Black in 2016 and 2017. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey) of seawater, sediment, biofilm and deep-sea sponge-associated microbes. The sponge species Vazella pourtalesii is covered.
attributes.tag: sample derived from
attributes.value: SAMN14422897,SAMN14422896
attributes.tag: sample name
attributes.value: SRP253650_co1_50
attributes.tag: scientific_name
attributes.value: uncultured Rhodobiaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach