title: Metagenome-assembled genome: SRP287051_co2_89
organism: uncultured Labilithrix sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12816583,SRR12822863 of study SRP287208.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP287051_co2_89
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.78
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 7.4
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: 39.95
attributes.tag: geographic location (longitude)
attributes.value: 116.3
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: biofilter metagenome
attributes.tag: local environmental context
attributes.value: biofilter biome
attributes.tag: metagenomic source
attributes.value: biofilter metagenome
attributes.tag: project name
attributes.value: Metagenomics analysis could provide the possibility to investigate the microbial composition and functional potential. In this study, four samples were collected to study their bacterial community structure and fuctional potentials.
attributes.tag: sample derived from
attributes.value: SAMN16427088,SAMN16434400
attributes.tag: sample name
attributes.value: SRP287051_co2_89
attributes.tag: scientific_name
attributes.value: uncultured Labilithrix sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach