title: Metagenome-assembled genome: SRP271791_co2_45
organism: Candidatus Micrarchaeota archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12217121,SRR12217123 of study SRP271791.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP271791_co2_45
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: 2018-05
attributes.tag: completeness score
attributes.value: 83.18
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.34
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: Spain
attributes.tag: geographic location (latitude)
attributes.value: 37.78
attributes.tag: geographic location (longitude)
attributes.value: -6.82
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: mine drainage metagenome
attributes.tag: local environmental context
attributes.value: mine drainage biome
attributes.tag: metagenomic source
attributes.value: mine drainage metagenome
attributes.tag: project name
attributes.value: In this Project, started in 2017, we are carrying out a comprehensive study of the complex interactions taking place in aqueous acidic solutions between dissolved metals and microbial cells inhabiting deep anoxic zones. These interactions can lead to biomineral formation and affect to the geochemical behavior of many different trace metals. We are also trying to identify adaptive mechanisms by the acidophiles to cope with extremely high salinity and metal concentrations existing in these habitats, and their possible implications for geomicrobiology and biotechnology (e.g., biomining, bioleaching). The project is funded by the Spanish Ministry of Economy and Competitiveness through its National Program of Research, Development and Innovation. The main methods used are Scanning Transmission Electron Microscopy, Cryo-Electron Microscopy, High-Resolution Transmission Electron Microscopy, Metagenomics, Metatranscriptomic, Electron Energy-Loss Spectroscopy, Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy, Bioreactors, Anaerobic Microbiology, Synchrotron X-Ray Diffraction, Biomolecular Analyses.
attributes.tag: sample derived from
attributes.value: SAMN15524494,SAMN15524492
attributes.tag: sample name
attributes.value: SRP271791_co2_45
attributes.tag: scientific_name
attributes.value: Candidatus Micrarchaeota archaeon
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach