title: Metagenome-assembled genome: binchicken_co369_80
organism: uncultured Desulfobulbus sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1725968,ERR2607432,ERR3212003,ERR4678565 of study ERP015409.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co369_80
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 89.38
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.41
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: wastewater metagenome
attributes.tag: local environmental context
attributes.value: wastewater biome
attributes.tag: metagenomic source
attributes.value: wastewater metagenome
attributes.tag: project name
attributes.value: Adequately monitoring of large populations and their environments is essential if we want to monitor pathogens and antimicrobial resistance around the globe. Recent developments in high‐throughput sequencing allow to rapidly identify nucleic acids from various organisms in clinical and environmental samples. Sewage systems are recognized as an important source of human pathogens, especially in crowded settings with poor infrastructure. A point‐prevalence metagenomic analysis is applied to sewage samples collected globally from the main sewage system of major cities prior to treatment plants inlet. The project is a proof‐of‐concept study for applying metagenomic approaches that could initiate a global surveillance of human infectious diseases including antimicrobial resistance from sewage collected in major cities around the world to detect, control, prevent and predict human infectious diseases.
attributes.tag: sample derived from
attributes.value: SAMEA4527616,SAMEA4700753,SAMEA5414648,SAMEA7426265
attributes.tag: sample name
attributes.value: binchicken_co369_80
attributes.tag: scientific_name
attributes.value: uncultured Desulfobulbus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 3000,Illumina HiSeq 3000,NextSeq 500,Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach