title: Metagenome-assembled genome: SRP141132_co4_130
organism: uncultured Coriobacteriaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7039256,SRR7039257,SRR7039263 of study SRP141132.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP141132_co4_130
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 80.47
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.16
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Norway
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: To characterize the microbiome in the ceca of wild and captive ptarmigans. The goal is to better understand the physiology of the microbial community in the ceca of these birds to obtain a broader understanding of their digestive physiologies. Samples were collected from the ceca of wild and captive ptarmigans to check for differences between their respective microbiota, and see how living conditions may affect the microbial communities.
attributes.tag: sample derived from
attributes.value: SAMN08954405,SAMN08954403,SAMN08954395
attributes.tag: sample name
attributes.value: SRP141132_co4_130
attributes.tag: scientific_name
attributes.value: uncultured Coriobacteriaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 3000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach