title: Metagenome-assembled genome: binchicken_co221_23
organism: uncultured Campylobacteraceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1527276,ERR1527280 of study ERP016382.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co221_23
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2015
attributes.tag: completeness score
attributes.value: 92.7
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.09
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Australia
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: metagenome
attributes.tag: local environmental context
attributes.value: metagenome
attributes.tag: metagenomic source
attributes.value: metagenome
attributes.tag: project name
attributes.value: Data being used to reconstruct genomes. Please contact prior use until work is published. During the 1960s, assorted radioactive waste was disposed at the Little Forest Legacy Site near Sydney (Australia). Trenches were dug and filled with waste. It has been observed that after rainfall events, water overflows. The study aims to evaluate the potential community changes and relate them with expected fluctuating redox conditions.
attributes.tag: sample derived from
attributes.value: SAMEA4074289,SAMEA4074290
attributes.tag: sample name
attributes.value: binchicken_co221_23
attributes.tag: scientific_name
attributes.value: uncultured Campylobacteraceae bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach