title: Metagenome-assembled genome: SRP065251_co1_20
organism: uncultured Saprospiraceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2835677,SRR2835678 of study SRP065251.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP065251_co1_20
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2011-08-18
attributes.tag: completeness score
attributes.value: 86.5
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.46
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Australia
attributes.tag: geographic location (latitude)
attributes.value: -33.990892
attributes.tag: geographic location (longitude)
attributes.value: 151.23212
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: algae metagenome
attributes.tag: local environmental context
attributes.value: algae biome
attributes.tag: metagenomic source
attributes.value: algae metagenome
attributes.tag: project name
attributes.value: Marine eukaryotes live in constant interaction with microorganisms that colonise their surfaces. The mechanisms that can drive the selection of those microbial communities are poorly understood. Metagenomes of microbial communities associated to the surfaces of different macroalgal and seagrass species, rocks and those present in the surrounding seawater were sequenced in order to compare their taxonomic composition and functionality using statistical analyses.
attributes.tag: sample derived from
attributes.value: SAMN04215149
attributes.tag: sample name
attributes.value: SRP065251_co1_20
attributes.tag: scientific_name
attributes.value: uncultured Saprospiraceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina Genome Analyzer IIx
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach