title: Metagenome-assembled genome: binchicken_co96_84
organism: uncultured Gammaproteobacteria bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6344961,SRR6344962 of study SRP126093.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co96_84
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2004-08
attributes.tag: completeness score
attributes.value: 84.48
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.36
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Russia
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: hot springs metagenome
attributes.tag: local environmental context
attributes.value: hot springs biome
attributes.tag: metagenomic source
attributes.value: hot springs metagenome
attributes.tag: project name
attributes.value: In this study we focus on two hydrothermal pools, Arkashin Shurf and Zavarzin Spring, in Uzon Caldera, Kamchatka, Russia that were previously characterized using 16S ribosomal RNA sequencing and geochemical analysis undertaken in Burgess et al. 2012 (DOI: 10.1007/s00248-011-9979-4). First we produced metagenomic assembled genomes (MAGs) and then we characterized and compared them between the two pools. Hypotheses: (1) Discussion of MAG's and possible functions novelty? (2) Comparison of Burgess 16S to metagenomes (3) Differences in functions between pools based on geochemistry.
attributes.tag: sample derived from
attributes.value: SAMN08105301,SAMN08105287
attributes.tag: sample name
attributes.value: binchicken_co96_84
attributes.tag: scientific_name
attributes.value: uncultured Gammaproteobacteria bacterium
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach