title: Host-derived Usutu virus, bird deceased in captivity, the Netherlands
organism: Usutu virus
description: Samples from birds in captivity testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
attributes.tag: ENA first public
attributes.value: 2025-06-11
attributes.tag: INSDC center name
attributes.value: One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: USUV_GridION_run24_bc07
attributes.tag: broker name
attributes.value: ERASMUS MC, UNIVERISTY MEDICAL CENTER
attributes.tag: collecting institution
attributes.value: One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
attributes.tag: collection date
attributes.value: 2016-09-01
attributes.tag: collector name
attributes.value: One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
attributes.tag: common name
attributes.value: Usutu virus
attributes.tag: geographic location (country and/or sea)
attributes.value: Netherlands
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: geographic location (region and locality)
attributes.value: Limburg
attributes.tag: host common name
attributes.value: Snowy Owl
attributes.tag: host disease outcome
attributes.value: dead
attributes.tag: host health state
attributes.value: not applicable
attributes.tag: host scientific name
attributes.value: Bubo scandiacus
attributes.tag: host sex
attributes.value: not provided
attributes.tag: host subject id
attributes.value: AS201600073
attributes.tag: isolate
attributes.value: USUV/NL/2016/AS201600073
attributes.tag: isolation source host-associated
attributes.value: spleen
attributes.tag: publication
attributes.value: Münger et al. (preprint, 2024) Emergence and Dynamics of Usutu and West Nile Viruses in the Netherlands, 2016-2022
attributes.tag: sample capture status
attributes.value: active surveillance not initiated by an outbreak
attributes.tag: sample name
attributes.value: USUV_GridION_run24_bc07
attributes.tag: scientific_name
attributes.value: Usutu virus