title: Metagenome-assembled genome: ERP107533_co1_19
organism: uncultured Hyphomicrobiaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2437276,ERR2437277 of study ERP107533.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP107533_co1_19
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: 2012-12-05
attributes.tag: completeness score
attributes.value: 78.76
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.99
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Chile
attributes.tag: geographic location (latitude)
attributes.value: -23.138472
attributes.tag: geographic location (longitude)
attributes.value: -68.247194
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: microbial mat metagenome
attributes.tag: local environmental context
attributes.value: microbial mat biome
attributes.tag: metagenomic source
attributes.value: microbial mat metagenome
attributes.tag: project name
attributes.value: Atacama region in Chile is one of the most arid locations in the world. Extreme conditions in the area include: high UV irradiation, hypersalinity, drastic temperature changes, and desiccation. Hypersaline lakes can be found in this environment, and therein, bacterial communities thrive in microbial mats and other structures. WGS metagenomics allows to analyze the genes in the environment and infer functional and taxonomic diversity, and also their influence in the biogeochemical setting. In the datasets from this project, two microbial mats from lakes Brava and Tebenquiche, in Atacama region in Chile, were analyzed.
attributes.tag: sample derived from
attributes.value: SAMEA81454168
attributes.tag: sample name
attributes.value: ERP107533_co1_19
attributes.tag: scientific_name
attributes.value: uncultured Hyphomicrobiaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 1500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach