title: Metagenome-assembled genome: SRP199465_co1_581
organism: uncultured Bacteroides sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9130108,SRR9335148 of study SRP199465.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP199465_co1_581
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2017
attributes.tag: completeness score
attributes.value: 88.84
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 5.38
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 30.4449951
attributes.tag: geographic location (longitude)
attributes.value: -84.3023827
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: The first goal is to establish a shotgun metagenome database of Illumina paired-end reads from the prairie vole (Microtus ochrogaster) from multiple individuals housed in the same colony (within-colony gamma diversity). This will be used as the basis for taxonomic assignment of the most abundant strains from individual animals before and after treatment with inoculation strains. Microbiome alteration is one of the phenotypes to be assayed in animals treated with inoculum. The other phenotypes to be assayed are behavior and neurochemical.
attributes.tag: sample derived from
attributes.value: SAMN11853144
attributes.tag: sample name
attributes.value: SRP199465_co1_581
attributes.tag: scientific_name
attributes.value: uncultured Bacteroides sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach