title: Metagenome-assembled genome: SRP291761_co1_32
organism: uncultured Coxiellaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12899023,SRR12899024 of study SRP291761.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP291761_co1_32
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: 2017-12
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.01
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: Panama
attributes.tag: geographic location (latitude)
attributes.value: 8.983333
attributes.tag: geographic location (longitude)
attributes.value: -79.51667
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: plastic metagenome
attributes.tag: local environmental context
attributes.value: plastic biome
attributes.tag: metagenomic source
attributes.value: plastic metagenome
attributes.tag: project name
attributes.value: Shotgun metagenomic and bioinformatic tools were applied for genome assembly and annotation of twelve different bacterial genomes from microbiome biofouled fabric materials contain plasticizers. These genomes harbor genes involved in hydrocarbon and fabric biodegradation providing useful information for developing antimicrobial additives.
attributes.tag: sample derived from
attributes.value: SAMN16111857,SAMN16111753
attributes.tag: sample name
attributes.value: SRP291761_co1_32
attributes.tag: scientific_name
attributes.value: uncultured Coxiellaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach