title: Metagenome-assembled genome: SRP252850_co1_245
organism: uncultured Methanosarcinales archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11308338,SRR11308339 of study SRP252850.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP252850_co1_245
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 72.91
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 3.48
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Mexico
attributes.tag: geographic location (latitude)
attributes.value: 26.8283
attributes.tag: geographic location (longitude)
attributes.value: -102.024639
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: microbial mat metagenome
attributes.tag: local environmental context
attributes.value: microbial mat biome
attributes.tag: metagenomic source
attributes.value: microbial mat metagenome
attributes.tag: project name
attributes.value: Cuatro Cienegas Basin is an endangered oasis with several ponds, rivers and springs within northern Mexico that has been proposed as a relictual site of a marine origin. During late March 2016, an unusual spring rain dissolved the salty crust of a pond we had not noticed before, allowing a microbial mat with a very unusual flexible bubble-containing superficial layer to emerge. These time series metagenome collection will allow various studies on the ecology, diversity and temporal changes within the community of this newly discovered microbial mat.
attributes.tag: sample derived from
attributes.value: SAMN14380052,SAMN14380051
attributes.tag: sample name
attributes.value: SRP252850_co1_245
attributes.tag: scientific_name
attributes.value: uncultured Methanosarcinales archaeon
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach