title: Metagenome-assembled genome: ERP125879_co2_117
organism: uncultured Erysipelotrichaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR5004577,ERR5005190 of study ERP125879.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP125879_co2_117
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 72.81
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.47
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Ukraine
attributes.tag: geographic location (latitude)
attributes.value: 51.212865
attributes.tag: geographic location (longitude)
attributes.value: 30.192893
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial communities from diverse environments on our planet. We developed new protocols for shotgun metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. 16S, 18S, and ITS amplicon sequencing was done in addition. We acquired a set of &gt 500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. A biobank of frozen aliquots for all samples is maintained at UCSD (soil samples stored at the Pacific Northwest National Laboratory) for future methods testing and analysis.
attributes.tag: sample derived from
attributes.value: SAMEA7724145
attributes.tag: sample name
attributes.value: ERP125879_co2_117
attributes.tag: scientific_name
attributes.value: uncultured Erysipelotrichaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach