title: Metagenome-assembled genome: binchicken_co122_15
organism: uncultured Thermoplasmatales archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12623519,SRR12623520 of study SRP282044.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co122_15
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2016-07-03
attributes.tag: completeness score
attributes.value: 85.74
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.66
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: 43.010478
attributes.tag: geographic location (longitude)
attributes.value: -60.211777
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: cold seep metagenome
attributes.tag: local environmental context
attributes.value: cold seep biome
attributes.tag: metagenomic source
attributes.value: cold seep metagenome
attributes.tag: project name
attributes.value: We performed metagenomic sequencing to profile the composition and function of deep sea benthic microbial communities spanning different redox regimes in the Scotian Basin seabed (2.3 km water depth).
attributes.tag: sample derived from
attributes.value: SAMN13702310,SAMN13702311
attributes.tag: sample name
attributes.value: binchicken_co122_15
attributes.tag: scientific_name
attributes.value: uncultured Thermoplasmatales archaeon
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach