title: Metagenome-assembled genome: ERP127260_co1_75
organism: uncultured Thermotogae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR5414699,ERR5414701 of study ERP127260.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP127260_co1_75
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 73.93
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.98
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Spain
attributes.tag: geographic location (latitude)
attributes.value: 39.32458333
attributes.tag: geographic location (longitude)
attributes.value: 2.98869444
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sediment metagenome
attributes.tag: local environmental context
attributes.value: sediment biome
attributes.tag: metagenomic source
attributes.value: sediment metagenome
attributes.tag: project name
attributes.value: The present study investigates the microbial community structure and potential metabolisms in S'Avall hypersaline sediments. The S'Avall salterns, located in Mallorca (Balearic Islands), have saline concentrations close to saturation (about 37% w/v). Here, we have used shotgun metagenomics and 16S rRNA gene amplicon sequencing to study the community composition and changes along space and time, as well as to reveal the metabolic diversity of the Metagenome Assembled Genomes (MAGs), especially focusing on the methanogenic prokaryotes.
attributes.tag: sample derived from
attributes.value: SAMEA8196469,SAMEA8196470
attributes.tag: sample name
attributes.value: ERP127260_co1_75
attributes.tag: scientific_name
attributes.value: uncultured Thermotogae bacterium
attributes.tag: sequencing method
attributes.value: Illumina MiSeq,Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach