title: Metagenome-assembled genome: binchicken_co316_45
organism: uncultured Methylobacillus sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3589589,SRR3933337 of study ERP010880.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co316_45
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 64.57
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.55
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: seawater metagenome
attributes.tag: local environmental context
attributes.value: seawater biome
attributes.tag: metagenomic source
attributes.value: seawater metagenome
attributes.tag: project name
attributes.value: Analysis of the genes and genomes present in Tara Oceans Polar Circle prokaryote size fractions through shotgun DNA sequencing. Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
attributes.tag: sample derived from
attributes.value: SAMEA4397390,SAMN05416740
attributes.tag: sample name
attributes.value: binchicken_co316_45
attributes.tag: scientific_name
attributes.value: uncultured Methylobacillus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500,Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach