title: Metagenome-assembled genome: binchicken_co133_2
organism: uncultured archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14000032,SRR14000036 of study SRP310192.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co133_2
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2015-04-18
attributes.tag: completeness score
attributes.value: 63.63
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.87
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: 23.957043
attributes.tag: geographic location (longitude)
attributes.value: -108.862273
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: hydrothermal vent metagenome
attributes.tag: local environmental context
attributes.value: hydrothermal vent biome
attributes.tag: metagenomic source
attributes.value: hydrothermal vent metagenome
attributes.tag: project name
attributes.value: Auka hydrothermal vent field is located at 3650m depth in Pescadero Basin, at the mouth of the Gulf of California. Auka is a sediment hosted hydrothermal vent field, and shares many characteristics with the more well-studied vents at Guaymas Basin, 400 km to the northeast. Analysis of the sediment microbial community at Auka provides insight in the factors shaping microbial community structure at sediments hosted hydrothermal vents.
attributes.tag: sample derived from
attributes.value: SAMN18353078,SAMN18353074
attributes.tag: sample name
attributes.value: binchicken_co133_2
attributes.tag: scientific_name
attributes.value: uncultured archaeon
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach