title: Metagenome-assembled genome: SRP330255_co2_182
organism: uncultured Alistipes sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15283116,SRR15283141 of study SRP330255.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP330255_co2_182
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: MEGAHIT;1.2.9;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2016-08
attributes.tag: completeness score
attributes.value: 92.27
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.96
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: When choosing suitable techniques for different application scenarios, more detailed metrics are needed to consider, e.g., specificity, sensitivity, repeatability, evenness, depth, etc. Here, we compared 8 metrics of Sequence-independent single-primer amplification and Multiple displacement amplification, as well as two emerged Meta-transcriptomics and Metagenomic , using marmot rectal samples spiked with different concentrations of 5 viruses. Results provide more information about the performance of these methods and help us to understand their suitability for different applications.
attributes.tag: sample derived from
attributes.value: SAMN20448104,SAMN20448044
attributes.tag: sample name
attributes.value: SRP330255_co2_182
attributes.tag: scientific_name
attributes.value: uncultured Alistipes sp.
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach