title: Metagenome-assembled genome: binchicken_co253_181
organism: uncultured Cytophagia bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5189953,SRR9849951 of study SRP097184.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co253_181
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 61.36
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.53
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: hydrothermal vent metagenome
attributes.tag: local environmental context
attributes.value: hydrothermal vent biome
attributes.tag: metagenomic source
attributes.value: hydrothermal vent metagenome
attributes.tag: project name
attributes.value: The Zetaproteobacteria are ubiquitous in marine environments, yet this class of Proteobacteria is only represented by a few closely related cultured isolates. In high-iron environments, such as diffuse hydrothermal vents, the Zetaproteobacteria are important members of the community driving its structure. Biogeography of Zetaproteobacteria has shown two ubiquitous operational taxonomic units (OTUs) yet much is unknown about their genomic diversity. This project focused on metagenomic sequencing of Zetaproteobacterial rich microbial communities.
attributes.tag: sample derived from
attributes.value: SAMN06226859,SAMN12330923
attributes.tag: sample name
attributes.value: binchicken_co253_181
attributes.tag: scientific_name
attributes.value: uncultured Cytophagia bacterium
attributes.tag: sequencing method
attributes.value: Illumina MiSeq,Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach