title: Metagenome-assembled genome: binchicken_co186_167
organism: uncultured Acidobacteriota bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8670877,SRR8670878,SRR8670879 of study SRP187592.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co186_167
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2016-08-04
attributes.tag: completeness score
attributes.value: 83.35
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 5.46
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Canada
attributes.tag: geographic location (latitude)
attributes.value: 81.82452
attributes.tag: geographic location (longitude)
attributes.value: -70.71619
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: freshwater sediment metagenome
attributes.tag: local environmental context
attributes.value: freshwater sediment biome
attributes.tag: metagenomic source
attributes.value: freshwater sediment metagenome
attributes.tag: project name
attributes.value: The Arctic is currently experiencing climate-change related warming, which rapidly affects the environmental constraints on its microbial communities. Yet, our knowledge of the community structure and function of high Arctic freshwater microbes is still lacking, even though they play key roles in nutrient cycling. Here, using high-throughput sequencing, we show that sediment microbial communities in the High Arctic's largest lake by volume, Lake Hazen, are highly diverse and contain novel organisms which genomes we could reconstruct.
attributes.tag: sample derived from
attributes.value: SAMN11056687
attributes.tag: sample name
attributes.value: binchicken_co186_167
attributes.tag: scientific_name
attributes.value: uncultured Acidobacteriota bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach