title: Metagenome-assembled genome: SRP050083_co8_148
organism: uncultured Pseudomonadales bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR1658465,SRR3309137 of study SRP050083.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP050083_co8_148
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2011-06
attributes.tag: completeness score
attributes.value: 65.73
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.76
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 39.5369
attributes.tag: geographic location (longitude)
attributes.value: -107.7828
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: groundwater metagenome
attributes.tag: local environmental context
attributes.value: groundwater biome
attributes.tag: metagenomic source
attributes.value: groundwater metagenome
attributes.tag: project name
attributes.value: The study encompasses 12 microbial samples sourced from an aquifer adjacent to the Colorado River near the town of Rifle, CO, USA. Samples were taken at 6 different times prior to and during an acetate amendment experiment. For each sample, cells were collected on serial 0.2 and 0.1 μm filters resulting in a total of 12 different samples.
attributes.tag: sample derived from
attributes.value: SAMN03202998
attributes.tag: sample name
attributes.value: SRP050083_co8_148
attributes.tag: scientific_name
attributes.value: uncultured Pseudomonadales bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach