title: Metagenome-assembled genome: SRP293105_co2_20
organism: uncultured Victivallaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13081177,SRR13081185 of study SRP293105.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP293105_co2_20
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: MEGAHIT;1.2.9;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2012-07-31
attributes.tag: completeness score
attributes.value: 97.39
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.34
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Albania
attributes.tag: geographic location (latitude)
attributes.value: 42.045532
attributes.tag: geographic location (longitude)
attributes.value: 19.489403
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: protist metagenome
attributes.tag: local environmental context
attributes.value: protist biome
attributes.tag: metagenomic source
attributes.value: protist metagenome
attributes.tag: project name
attributes.value: We sequenced the genome and transcriptome of Pelomyxa schiedti, a free-living anaerobic amoeba of the Archamoebae group, and its symbionts. The main aim was to reconstruct the metabolism of its anaerobic mitochondrial-related organelle (MRO) and peroxisome, and to reveal metabolic connections between the amoeba and its endosymbionts.
attributes.tag: sample derived from
attributes.value: SAMN16578620
attributes.tag: sample name
attributes.value: SRP293105_co2_20
attributes.tag: scientific_name
attributes.value: uncultured Victivallaceae bacterium
attributes.tag: sequencing method
attributes.value: HiSeq X Ten
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach