title: Metagenome-assembled genome: ERP107066_co1_45
organism: uncultured Methylococcus sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2345104,ERR2346693 of study ERP107066.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP107066_co1_45
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 84.95
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.83
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Brazil
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: metagenome
attributes.tag: local environmental context
attributes.value: metagenome
attributes.tag: metagenomic source
attributes.value: metagenome
attributes.tag: project name
attributes.value: Amazon river is an important freshwater basin. Known by its huge biodiversity, this water bodies possesses two marked seasons, flood and dry season. Here samples collected freshwater lakes samples during floods season belonging to Upper Amazon river basin (river course before Manaus city), filtered (< 5 um and > 0.2 um) and sequenced using Nextera XT libraries in a HiSeq 2500 Illumina Platform. These metagenomes reveal a great functional and taxonomic diversity and can lead to a better understanding about seasonal changes in this ecosystem.
attributes.tag: sample derived from
attributes.value: SAMEA104641231,SAMEA104641232
attributes.tag: sample name
attributes.value: ERP107066_co1_45
attributes.tag: scientific_name
attributes.value: uncultured Methylococcus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach