title: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, specimen R45
organism: crustacean metagenome
attributes.tag: ENA first public
attributes.value: 2024-01-01
attributes.tag: External Id
attributes.value: SAMEA115099244
attributes.tag: INSDC center name
attributes.value: Ifremer
attributes.tag: INSDC last update
attributes.value: 2024-01-12T10:52:23Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: sam_Rem-271-Br-R45-TC
attributes.tag: TARGETED_LOCI
attributes.value: 16S rRNA
attributes.tag: adapters
attributes.value: 5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
attributes.tag: broad-scale environmental context
attributes.value: hydrothermal vent
attributes.tag: broker name
attributes.value: SeBiMER
attributes.tag: collecting institution
attributes.value: ifremer
attributes.tag: collection date
attributes.value: 2018-02-09
attributes.tag: common name
attributes.value: crustacean metagenome
attributes.tag: depth
attributes.value: 3650
attributes.tag: dev_stage
attributes.value: stage A
attributes.tag: environmental medium
attributes.value: organ
attributes.tag: environmental package
attributes.value: host-associated
attributes.tag: environmental_sample
attributes.value: yes
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: 26.1
attributes.tag: geographic location (longitude)
attributes.value: -44.8
attributes.tag: geographic location (region and locality)
attributes.value: Mid-Atlantic Ridge
attributes.tag: investigation type
attributes.value: bacteria_archaea
attributes.tag: isolate
attributes.value: R45
attributes.tag: isolation_source
attributes.value: hydrothermal vent
attributes.tag: local environmental context
attributes.value: arthropoda
attributes.tag: multiplex identifiers
attributes.value: TTAAAT
attributes.tag: pcr primers
attributes.value: WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3
attributes.tag: project name
attributes.value: rimicaris_juveniles
attributes.tag: sample name
attributes.value: sam_Rem-271-Br-R45-TC
attributes.tag: sample_description
attributes.value: 16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, stage A from TAG, amplified by Nested PCR.
attributes.tag: sample_name
attributes.value: Rem-271-Br-R45-TC
attributes.tag: scientific_name
attributes.value: crustacean metagenome
attributes.tag: sequencing method
attributes.value: Sequencing by synthesis (Illumina)
attributes.tag: target gene
attributes.value: 16S rRNA
attributes.tag: target subfragment
attributes.value: V3V4
attributes.tag: tissue_type
attributes.value: gills