title: Metagenome-assembled genome: binchicken_co395_33
organism: uncultured Thermoanaerobaculia bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8652710,SRR8652715 of study SRP187249.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co395_33
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: 2016-09-15
attributes.tag: completeness score
attributes.value: 89.56
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.91
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Mexico
attributes.tag: geographic location (latitude)
attributes.value: 19.51
attributes.tag: geographic location (longitude)
attributes.value: -98.55
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sediment metagenome
attributes.tag: local environmental context
attributes.value: sediment biome
attributes.tag: metagenomic source
attributes.value: sediment metagenome
attributes.tag: project name
attributes.value: Lake Chalco is one of the last remains left a large lacustrine system by the growth of Mexico City, which was settlement area of significant pre-columbine civilizations, including Aztecs that flourished in this area at the end of the XV century. We describe the prokaryotic and eukaryotic community structure, and gene function analysis of the past 12,000 years, from a sedimentary sequence of Lake Chalco. This study contributed to the understanding of the Holocene period within an area with well characterized environmental conditions of a Neotropical region.
attributes.tag: sample derived from
attributes.value: SAMN10939631,SAMN10939625
attributes.tag: sample name
attributes.value: binchicken_co395_33
attributes.tag: scientific_name
attributes.value: uncultured Thermoanaerobaculia bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach