title: Metagenome-assembled genome: binchicken_co8_286
organism: uncultured Spirochaetaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1878617,ERR2407577 of study ERP021393.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co8_286
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: 2013-12-02
attributes.tag: completeness score
attributes.value: 90.79
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.6
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: Chile
attributes.tag: geographic location (latitude)
attributes.value: -23.730056
attributes.tag: geographic location (longitude)
attributes.value: -68.246861
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: microbial mat metagenome
attributes.tag: local environmental context
attributes.value: microbial mat biome
attributes.tag: metagenomic source
attributes.value: microbial mat metagenome
attributes.tag: project name
attributes.value: High Andean Mountain lakes are a unique extreme environment all over the world since their locations are in high altitude saline deserts, largely influenced by volcanic activity. UV radiation, arsenic content, high salinity, and low dissolved oxygen content, together with extreme daily temperature fluctuations and oligotrophic conditions, shape up an environment that recreates the early earth and, even more, the extraterrestrial conditions. The discovery of living microbialites and microbial mats in 2009 has increased the interest in this area as an early earth counterpart. Since then, and up to now, we have started a prospection for this kind of environments in Argentina, Chile and Bolivia. In this study, we report our metagenomic WGS results from several of these unique environments
attributes.tag: sample derived from
attributes.value: SAMEA81453418
attributes.tag: sample name
attributes.value: binchicken_co8_286
attributes.tag: scientific_name
attributes.value: uncultured Spirochaetaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 1500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach