title: Metagenome-assembled genome: SRP144015_co1_9
organism: uncultured Gammaproteobacteria bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7082966,SRR7082976 of study SRP144015.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP144015_co1_9
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: 2016-07-26
attributes.tag: completeness score
attributes.value: 99.52
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.27
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: Italy
attributes.tag: geographic location (latitude)
attributes.value: 45.386549
attributes.tag: geographic location (longitude)
attributes.value: 11.91084
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: bioreactor metagenome
attributes.tag: local environmental context
attributes.value: bioreactor biome
attributes.tag: metagenomic source
attributes.value: bioreactor metagenome
attributes.tag: project name
attributes.value: In the present research, six landfill simulation reactors (Ca, Cb, Ia, Ib, Aa, Ab) were filled with municipal solid waste and managed in order to compare an intermittent solution for the aeration of waste with continuous air injection. The experiment was divided in two main phases: landfill simulation (LS) and remediation simulation (RS). The LS phase was made by a pre-aeration, lasted 13 days, and a 53-days long anaerobic period. The RS phase lasted 142 days during which the six columns were managed in three different ways: Ca and Cb were continuously aerated Ia and Ib were intermittently aerated using the same flux Aa and Ab were maintained anaerobic.
attributes.tag: sample derived from
attributes.value: SAMN08985419,SAMN08985431
attributes.tag: sample name
attributes.value: SRP144015_co1_9
attributes.tag: scientific_name
attributes.value: uncultured Gammaproteobacteria bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach