title: Metagenome-assembled genome: SRP182702_co1_258
organism: uncultured Lewinella sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8497110,SRR8497111 of study SRP182702.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP182702_co1_258
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: MEGAHIT;1.2.9;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: 2018-01-17/2018-01-26
attributes.tag: completeness score
attributes.value: 94.25
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 3.43
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: Hong Kong
attributes.tag: geographic location (latitude)
attributes.value: 22.34
attributes.tag: geographic location (longitude)
attributes.value: 114.27
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: biofilm metagenome
attributes.tag: local environmental context
attributes.value: biofilm biome
attributes.tag: metagenomic source
attributes.value: biofilm metagenome
attributes.tag: project name
attributes.value: Through the comparison of metagenomes, we aim to highlight the roles of quorum sensing signals play in biofilm community, and explore the different impacts of each molecules.
attributes.tag: sample derived from
attributes.value: SAMN10712703
attributes.tag: sample name
attributes.value: SRP182702_co1_258
attributes.tag: scientific_name
attributes.value: uncultured Lewinella sp.
attributes.tag: sequencing method
attributes.value: HiSeq X Ten
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach