title: Metagenome-assembled genome: binchicken_co246_222
organism: uncultured Smithella sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11235434,SRR8476370 of study SRP187139.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co246_222
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.53
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.55
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: activated sludge metagenome
attributes.tag: local environmental context
attributes.value: activated sludge biome
attributes.tag: metagenomic source
attributes.value: activated sludge metagenome
attributes.tag: project name
attributes.value: ANTIRES investigates the occurrence and expression of antibiotic resistance genes (ARG) and antibiotic resistant microorganisms (ARM) in wastewater using state-of-the-art complementary meta-omics techniques. In order to identify distribution pathways of ARGs through polluted wastewater, samples of municipal wastewater are taken at seasonal intervals. The integration of microbiological and biochemical as well as metagenome, metatranscriptome and metaproteome analyses should provide information about the occurrence of antibiotics, ARMs and actually expressed ARGs. The results of these investigations will be used to establish an antibiotic resistance rapid test. The data and diagnostic tools collected in ANTIRES contribute to a better understanding of the distribution pathways and seasonal dynamics of antibiotic resistance in water bodies and are therefore essential for the development of strategies to contain this process.
attributes.tag: sample derived from
attributes.value: SAMN14069892,SAMN10351349
attributes.tag: sample name
attributes.value: binchicken_co246_222
attributes.tag: scientific_name
attributes.value: uncultured Smithella sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach