title: Metagenome-assembled genome: ERR2919991_concoct_7
organism: uncultured Comamonadaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2919991 of study ERP112211.
attributes.tag: ENA first public
attributes.value: 2025-06-10
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERR2919991_concoct_7
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaspades_v3.15.5
attributes.tag: binning parameters
attributes.value: default
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: broad-scale environmental context
attributes.value: marine polar
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2014-11
attributes.tag: completeness score
attributes.value: 55.01
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: contamination score
attributes.value: 1.09
attributes.tag: environmental medium
attributes.value: marine sediment
attributes.tag: geographic location (country and/or sea)
attributes.value: Antarctica
attributes.tag: geographic location (latitude)
attributes.value: missing: third party data
attributes.tag: geographic location (longitude)
attributes.value: missing: third party data
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sediment metagenome
attributes.tag: local environmental context
attributes.value: volcanic bay
attributes.tag: metagenomic source
attributes.value: sediment metagenome
attributes.tag: project name
attributes.value: In the 20th century, Whalers Bay of Deception Island, Maritime Antarctica, was known as a port where whalers have established for processing whale oil. At present, the island is one of the most visited by tourists. The extent of the anthropogenic impact of human activities is unknown, and there are no studies on microbial resistance/tolerance mechanisms at Whalers Bay. Therefore, this work aimed to investigate the resistome profiles along a biofilm formed on top of sediments at Whalers Bay using metagenomics. The research team of MycoAntar Project collected the sediment samples during the summer 2014-15. Total DNA extraction of four samples along a transect of 27.5 m was performed in duplicate, followed by sequencing using the Illumina HiSeq platform.
attributes.tag: sample derived from
attributes.value: SAMEA5096393
attributes.tag: sample name
attributes.value: ERR2919991_concoct_7
attributes.tag: scientific_name
attributes.value: uncultured Comamonadaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach