title: Metagenome-assembled genome: SRP324684_co1_12
organism: uncultured Arcobacter sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15291763,SRR15291766 of study SRP324684.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP324684_co1_12
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2020-11-02
attributes.tag: completeness score
attributes.value: 95.19
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Malaysia
attributes.tag: geographic location (latitude)
attributes.value: 5.3398
attributes.tag: geographic location (longitude)
attributes.value: 100.2818
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: Microbiota inhabiting the animal digestive systems contribute to the host metabolic capacity. To date, information on crustacean gut microbiota function is scarce. 16S rRNA amplicon and shotgun metagenomic sequencing were performed to study the taxonomy and function of orange mud crab gut microbiota.
attributes.tag: sample derived from
attributes.value: SAMN19689471,SAMN19689470
attributes.tag: sample name
attributes.value: SRP324684_co1_12
attributes.tag: scientific_name
attributes.value: uncultured Arcobacter sp.
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach