title: Metagenome-assembled genome: SRP334346_co1_110
organism: uncultured Nannocystaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15635848,SRR15635857 of study SRP334346.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP334346_co1_110
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: 2020-06
attributes.tag: completeness score
attributes.value: 90.12
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 2.87
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: aquaculture metagenome
attributes.tag: local environmental context
attributes.value: aquaculture biome
attributes.tag: metagenomic source
attributes.value: aquaculture metagenome
attributes.tag: project name
attributes.value: These findings may greatly increase our understanding of the microbiota characteristics of the shrimp biofloc based aquaculture system and the complex interactions among shrimp, ambient microflora, and environmental variables. It provides a reference basis for policy on breeding environment safety and maintaining food safety in the production of Penaeus monodon.
attributes.tag: sample derived from
attributes.value: SAMN21013339,SAMN21013338
attributes.tag: sample name
attributes.value: SRP334346_co1_110
attributes.tag: scientific_name
attributes.value: uncultured Nannocystaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach