title: Metagenome-assembled genome: binchicken_co162_595
organism: uncultured Thermoplasmatales archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12736056,SRR13781415 of study SRP285691.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co162_595
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.52
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.09
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: soil metagenome
attributes.tag: local environmental context
attributes.value: soil biome
attributes.tag: metagenomic source
attributes.value: soil metagenome
attributes.tag: project name
attributes.value: 5 peat metagenomes and 5 peat viromes from the Spruce and Peatlands Under Changing Environments (SPRUCE) whole-ecosystem warming experiment and its surrounding bog were analyzed to assess viral diversity, and determine peat viral community compositional patterns after two years of increased temperature treatments.
attributes.tag: sample derived from
attributes.value: SAMN16285460,SAMN17675944
attributes.tag: sample name
attributes.value: binchicken_co162_595
attributes.tag: scientific_name
attributes.value: uncultured Thermoplasmatales archaeon
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach