title: Metagenome-assembled genome: ERP107106_co1_195
organism: uncultured Muribaculaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3345669,ERR3345690 of study ERP107106.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP107106_co1_195
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 83.6
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 5.34
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: gut metagenome
attributes.tag: local environmental context
attributes.value: gut biome
attributes.tag: metagenomic source
attributes.value: gut metagenome
attributes.tag: project name
attributes.value: In collaboration with University of Ghana, Accra, Ghana and Makerere University, Kampala, Uganda, we have collected samples from community and privately used pit latrines. In parallel we have also collected samples from volunteers who use those pit latrines routinely to assess the following: if pit latrines offer such environment that will minimise pathogens if we see any clear correlation between pathogens identified in pit latrine and people using it if different depths of pit latrines offer different environment, resulting in different mocrobial composition For the first time this project will give us an idea on the gut microbial composition of a Ghanain and a Ugandan national. We will compare this to the gut microbiota information publically available from caucasian and Indian population. In addition, our project will also generate scientific data to advise the local public health agencies on the appropriate depth a pit latrine should have. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
attributes.tag: sample derived from
attributes.value: SAMEA104717255,SAMEA104717257
attributes.tag: sample name
attributes.value: ERP107106_co1_195
attributes.tag: scientific_name
attributes.value: uncultured Muribaculaceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach