title: Metagenome-assembled genome: binchicken_co356_36
organism: uncultured Legionellales bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2090168,SRR3989311 of study SRP060520.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co356_36
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 74.98
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.54
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: groundwater metagenome
attributes.tag: local environmental context
attributes.value: groundwater biome
attributes.tag: metagenomic source
attributes.value: groundwater metagenome
attributes.tag: project name
attributes.value: Subsurface processes impact the composition and functioning of the biosphere and atmosphere over both short and geological timescales. Below the soil zone, the microorganisms that mediate transformations of nutrients, trace gases and contaminants are particularly poorly understood. Here, we analyzed 2,542 high-quality draft and complete bacterial and archaeal genomes newly reconstructed from terabases of sequence data collected from sediment and groundwater. This unprecedented scale of genome sampling from a single site represents ~28% of the organisms detected. Analysis of the genome dataset revealed that multiple organisms, including some from ~34 newly detected phyla, are often required to complete redox pathways. Thus, we infer that a complex network of metabolic handoffs extensively cross-links subsurface biogeochemical cycles.
attributes.tag: sample derived from
attributes.value: SAMN03842446,SAMN05421977
attributes.tag: sample name
attributes.value: binchicken_co356_36
attributes.tag: scientific_name
attributes.value: uncultured Legionellales bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach