title: Metagenome-assembled genome: SRP162660_co1_221
organism: uncultured archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7905022,SRR7905024 of study SRP162660.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP162660_co1_221
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2016-09
attributes.tag: completeness score
attributes.value: 55.88
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.34
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Japan
attributes.tag: geographic location (latitude)
attributes.value: 34.318
attributes.tag: geographic location (longitude)
attributes.value: 139.216
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: hot springs metagenome
attributes.tag: local environmental context
attributes.value: hot springs biome
attributes.tag: metagenomic source
attributes.value: hot springs metagenome
attributes.tag: project name
attributes.value: The goal of this project was to characterize the microbial community of Japanese hot springs as unique analogs of early Earth environments, including those in which geobiologically important rock types like stromatolites and banded iron formations were deposited. Understanding the diversity and metabolisms of microbes in these environments, and the geochemical cycling they support, will help us to understand how these rock types may have formed early in Earth history.
attributes.tag: sample derived from
attributes.value: SAMN10130913,SAMN10130912
attributes.tag: sample name
attributes.value: SRP162660_co1_221
attributes.tag: scientific_name
attributes.value: uncultured archaeon
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 3000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach