title: Metagenome-assembled genome: binchicken_co46_878
organism: uncultured Thiothrix sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5007139,SRR5211068 of study SRP092902.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co46_878
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 79.53
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 5.89
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: subsurface metagenome
attributes.tag: local environmental context
attributes.value: subsurface biome
attributes.tag: metagenomic source
attributes.value: subsurface metagenome
attributes.tag: project name
attributes.value: In the Mediterranean and other temperate waters, the stratification of the water column is a seasonal phenomenon that usually starts in April and ends in November. In this work, we have analyzed by high throughput metagenomics a fine profile of a stratified water column off the coast of Alicante, at 60 nautical miles, collected in October 2015. The bioproject contains several metagenomes and assembled genomes recovered from the same location but at different depths (15, 30, 45, 60, 75, 90, 1000 and 2000 m).
attributes.tag: sample derived from
attributes.value: SAMN05992384,SAMN06267294
attributes.tag: sample name
attributes.value: binchicken_co46_878
attributes.tag: scientific_name
attributes.value: uncultured Thiothrix sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000,Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach