title: Metagenome-assembled genome: SRP062349_co4_58
organism: uncultured Candidatus Saccharibacteria bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2177950,SRR5855235 of study SRP062349.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP062349_co4_58
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2013-12-04
attributes.tag: completeness score
attributes.value: 90.07
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.09
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 39.32
attributes.tag: geographic location (longitude)
attributes.value: -107.46
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: groundwater metagenome
attributes.tag: local environmental context
attributes.value: groundwater biome
attributes.tag: metagenomic source
attributes.value: groundwater metagenome
attributes.tag: project name
attributes.value: The Genomes-to-Watershed Scientific Focus Area (SFA) 2.0 aims to develop a predictive</p><p>understanding of how climate or land-use induced changes can affect overall watershed</p><p>biogeochemical functioning. At the Rifle (CO) study site, this scope includes influx of dissolved</p><p>oxygen or nitrate into a perennially suboxic/anoxic aquifer containing a large reservoir of</p><p>reduced Fe- and S-containing compounds. The role of the "Metabolic Potential" component of</p><p>SFA 2.0 is to characterize prevalent metabolic pathways in subsurface microbes and to use these</p><p>data to inform the next generation of trait-based microbial models (GEWaSC).
attributes.tag: sample derived from
attributes.value: SAMN03983887
attributes.tag: sample name
attributes.value: SRP062349_co4_58
attributes.tag: scientific_name
attributes.value: uncultured Candidatus Saccharibacteria bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000,Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach