title: Metagenome-assembled genome: SRP239594_co1_49
organism: uncultured bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10836660,SRR10836661 of study SRP239594.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP239594_co1_49
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2011-03-25
attributes.tag: completeness score
attributes.value: 91.78
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.48
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: geographic location (latitude)
attributes.value: 8.68
attributes.tag: geographic location (longitude)
attributes.value: -84.03
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine sediment metagenome
attributes.tag: local environmental context
attributes.value: marine sediment biome
attributes.tag: metagenomic source
attributes.value: marine sediment metagenome
attributes.tag: project name
attributes.value: In this project, we reconstruct microbial genomes from the metagenome sequencing data from shallow sediments in core U1379B collected from the Costa Rica Margin during IODP Expedition 334. We used these data to discuss the diversity and potential metabolic functions of microbes especially a couple of novel benthic archaea in subduction zone sediments.
attributes.tag: sample derived from
attributes.value: SAMN13740709,SAMN13740703
attributes.tag: sample name
attributes.value: SRP239594_co1_49
attributes.tag: scientific_name
attributes.value: uncultured bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach