title: Metagenome-assembled genome: binchicken_co293_339
organism: uncultured Chryseobacterium sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2094175,SRR7080638 of study ERP024470.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co293_339
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 70.48
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 1.95
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: not applicable
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: seawater metagenome
attributes.tag: local environmental context
attributes.value: seawater biome
attributes.tag: metagenomic source
attributes.value: seawater metagenome
attributes.tag: project name
attributes.value: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.
attributes.tag: sample derived from
attributes.value: SAMEA104210112,SAMN08777771
attributes.tag: sample name
attributes.value: binchicken_co293_339
attributes.tag: scientific_name
attributes.value: uncultured Chryseobacterium sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach