title: Metagenome-assembled genome: SRP215229_co1_1
organism: uncultured Enterobacteriaceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9705320,SRR9705321 of study SRP215229.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP215229_co1_1
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2017
attributes.tag: completeness score
attributes.value: 84.87
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.87
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: 22.75
attributes.tag: geographic location (longitude)
attributes.value: -46.083
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: seawater metagenome
attributes.tag: local environmental context
attributes.value: seawater biome
attributes.tag: metagenomic source
attributes.value: seawater metagenome
attributes.tag: project name
attributes.value: Mid-ocean ridge flanks are composed of geologically young (1-65 million year old) rock and make up 75% of the ocean floor. Ocean crustal fluid (water circulating through ocean crust) accounts for 1-2% of the total ocean volume, or about 1.35-27 million trillion liters of water. North Pond is an isolated sediment pond on the western flank of the Mid-Atlantic Ridge, underlain by basaltic rock and a cold, oxygenated aquifer that chemically resembles seawater. The microbial populations that inhabit this crustal fluid, however, are distinct from those in the ocean above. This project examines the taxonomy and genetic capability of the microbial communities inhabiting the crustal fluids beneath North Pond.
attributes.tag: sample derived from
attributes.value: SAMN12277442,SAMN12277464
attributes.tag: sample name
attributes.value: SRP215229_co1_1
attributes.tag: scientific_name
attributes.value: uncultured Enterobacteriaceae bacterium
attributes.tag: sequencing method
attributes.value: NextSeq 500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach