title: Metagenome-assembled genome: SRP135972_co1_130
organism: uncultured Saprospiraceae bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6869045,SRR6869053 of study SRP135972.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP135972_co1_130
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: engineered
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.99
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 4.38
attributes.tag: environmental medium
attributes.value: engineered
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: biofilm metagenome
attributes.tag: local environmental context
attributes.value: biofilm biome
attributes.tag: metagenomic source
attributes.value: biofilm metagenome
attributes.tag: project name
attributes.value: Microbes play important roles in biogeochemical cycling in the marine environment. Recent investigations through big data analyses have assess the global ocean microbial diversity. Planktonic microbes can adhere to surface to form structured communities called biofilms, yet whose specificity compared with the seed water communities have not been systematically evaluated.
attributes.tag: sample derived from
attributes.value: SAMN08714533
attributes.tag: sample name
attributes.value: SRP135972_co1_130
attributes.tag: scientific_name
attributes.value: uncultured Saprospiraceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach