title: Metagenome-assembled genome: SRP063590_co1_133
organism: uncultured Microcoleus sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7428105,SRR7428122 of study SRP063590.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP063590_co1_133
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: SemiBin2;2.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: terrestrial
attributes.tag: collection date
attributes.value: 2012-09
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: environmental medium
attributes.value: terrestrial
attributes.tag: geographic location (country and/or sea)
attributes.value: France
attributes.tag: geographic location (latitude)
attributes.value: 43.484946
attributes.tag: geographic location (longitude)
attributes.value: 5.188452
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: microbial mat metagenome
attributes.tag: local environmental context
attributes.value: microbial mat biome
attributes.tag: metagenomic source
attributes.value: microbial mat metagenome
attributes.tag: project name
attributes.value: This project aimed to determine the impact of hydrocarbon contamination on the structure and activity of prokaryotic community in natural microbial mats.
attributes.tag: sample derived from
attributes.value: SAMN04044568
attributes.tag: sample name
attributes.value: SRP063590_co1_133
attributes.tag: scientific_name
attributes.value: uncultured Microcoleus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach