title: Metagenome-assembled genome: binchicken_co202_12
organism: uncultured archaeon
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12068623,SRR5189788 of study SRP159621.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co202_12
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: 2011-11-08
attributes.tag: completeness score
attributes.value: 79.25
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.33
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (latitude)
attributes.value: 22.8
attributes.tag: geographic location (longitude)
attributes.value: -46.05
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: marine sediment metagenome
attributes.tag: local environmental context
attributes.value: marine sediment biome
attributes.tag: metagenomic source
attributes.value: marine sediment metagenome
attributes.tag: project name
attributes.value: This project aims to understand the diversity and ecophysiology of microbes especially those involved in the nitrogen cycling in oligotrophic subseafloor sediments, by integrating geochemical measurements and modeling, amplicon sequencing, and quantification of functional genes.
attributes.tag: sample derived from
attributes.value: SAMN09979605,SAMN06240273
attributes.tag: sample name
attributes.value: binchicken_co202_12
attributes.tag: scientific_name
attributes.value: uncultured archaeon
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500,Illumina HiSeq 1000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach