title: Metagenome-assembled genome: binchicken_co363_14
organism: uncultured Prevotella sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5940699,SRR5940701 of study SRP107228.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: binchicken_co363_14
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT;2.15;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: 2015-01-21
attributes.tag: completeness score
attributes.value: 52.65
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.15
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Brazil
attributes.tag: geographic location (latitude)
attributes.value: -22.6813
attributes.tag: geographic location (longitude)
attributes.value: -46.9272
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: insect metagenome
attributes.tag: local environmental context
attributes.value: insect biome
attributes.tag: metagenomic source
attributes.value: insect metagenome
attributes.tag: project name
attributes.value: Blowflies and houseflies (Diptera) are mechanical vectors of pathogens that feed and breed in corpses, waste and decaying organic matter, where they also may acquire a significant part of their microbiome. Individual flies collected in urban, natural, and rural environments were sequenced using whole genome shotgun sequencing. Datasets were filtered to remove the fly host genome.
attributes.tag: sample derived from
attributes.value: SAMN07135659,SAMN07135661
attributes.tag: sample name
attributes.value: binchicken_co363_14
attributes.tag: scientific_name
attributes.value: uncultured Prevotella sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach