title: Metagenome-assembled genome: SRP144767_co1_204
organism: uncultured Nitrospira sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7153378,SRR7153385 of study SRP144767.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRP144767_co1_204
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: host
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.92
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.16
attributes.tag: environmental medium
attributes.value: host
attributes.tag: geographic location (country and/or sea)
attributes.value: Arctic Ocean
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sponge metagenome
attributes.tag: local environmental context
attributes.value: sponge biome
attributes.tag: metagenomic source
attributes.value: sponge metagenome
attributes.tag: project name
attributes.value: This dataset was collected during expedition PS101 of research vessel POLARSTERN to the Arctic Ocean in 2016. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey), metagenomes and metatranscriptomes of deep-sea sponge-associated and seawater microbes.
attributes.tag: sample derived from
attributes.value: SAMN09064976,SAMN09064958
attributes.tag: sample name
attributes.value: SRP144767_co1_204
attributes.tag: scientific_name
attributes.value: uncultured Nitrospira sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach