title: Metagenome-assembled genome: ERP113451_co3_425
organism: uncultured Candidatus Saccharibacteria bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3094294,ERR3094296 of study ERP113451.
attributes.tag: ENA first public
attributes.value: 2024-12-11
attributes.tag: INSDC center name
attributes.value: CMR
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERP113451_co3_425
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes;3.15.4;default
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: VAMB;3.0.2;default
attributes.tag: broad-scale environmental context
attributes.value: aquatic
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.03
attributes.tag: completeness software
attributes.value: CheckM2;1.0.2;default
attributes.tag: contamination score
attributes.value: 0.65
attributes.tag: environmental medium
attributes.value: aquatic
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: metagenome
attributes.tag: local environmental context
attributes.value: metagenome
attributes.tag: metagenomic source
attributes.value: metagenome
attributes.tag: project name
attributes.value: Total microbial communities were collected from an old gasworks site over a year (May 2016 - May 2017). Six sampling stations were studied. Fourteen total metagenomes, viromes and 16S rRNA gene amplicon datasets were generated using Illumina Sequencing. For details about this study, please refer to: Costeira R, Doherty R, Allen CCR, Larkin MJ, Kulakov LA. Analysis of viral and bacterial communities in groundwater associated with contaminated land. Sci Total Environ 2019 656:1413–26. doi:10.1016/j.scitotenv.2018.11.429.This work was supported by the European Union's Horizon 2020 - Research and Innovation Framework Programme under the Marie Sklodowska-Curie grant agree-ment No. 643087 REMEDIATE (Improved decision-making in contaminated land site investigation and risk assessment).
attributes.tag: sample derived from
attributes.value: SAMEA5243711,SAMEA5243713
attributes.tag: sample name
attributes.value: ERP113451_co3_425
attributes.tag: scientific_name
attributes.value: uncultured Candidatus Saccharibacteria bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000,Illumina HiSeq 2000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach