title: Metagenome-assembled genome: LAPP22-1_SAMN25292456_MAG_00000002
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23492592 of study PRJEB73075.
attributes.tag: assembly software
attributes.value: metaSPAdes 3.14
attributes.tag: broad-scale environmental context
attributes.value: not provided
attributes.tag: collection date
attributes.value: 2019-07-23
attributes.tag: sample derived from
attributes.value: SAMN25292456
attributes.tag: geographic location (longitude)
attributes.value: 171.43600000
attributes.tag: binning parameters
attributes.value: metabat2 -i assembly.fasta -a coabudance.depth  --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
attributes.tag: contamination score
attributes.value: 1.41
attributes.tag: completeness software
attributes.value: Anvio 7.1
attributes.tag: geographic location (country and/or sea)
attributes.value: Pacific Ocean
attributes.tag: binning software
attributes.value: MetaBAT2 + co-abundance
attributes.tag: organism
attributes.value: Acidimicrobiaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 80.28
attributes.tag: environmental medium
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: -45.82600000
attributes.tag: scientific_name
attributes.value: Acidimicrobiaceae bacterium
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: local environmental context
attributes.value: not provided
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA801081. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
attributes.tag: sequencing method
attributes.value: ILLUMINA
attributes.tag: isolation_source
attributes.value: marine metagenome