ENA first public
2026-04-30
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
MAKI22-1_SAMN20322031_MAG_00000029
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2018-09-06
completeness score
98.59
completeness software
Anvio 7.1
contamination score
0.0
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
geographic location (latitude)
-39.24900000
geographic location (longitude)
-43.39400000
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
not provided
metagenomic source
marine metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA748242. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN20322031
sample name
MAKI22-1_SAMN20322031_MAG_00000029
scientific_name
Marinobacter salarius
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach