ENA first public
2026-04-30
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
NAPP22-1_SAMN15346752_MAG_00000059
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2017-12-03
completeness score
92.83
completeness software
CheckM v1.1.3
contamination score
1.21
environmental medium
not provided
geographic location (country and/or sea)
Australia
geographic location (latitude)
-33.99271400
geographic location (longitude)
151.23120800
investigation type
metagenome-assembled genome
isolation_source
algae metagenome
local environmental context
not provided
metagenomic source
algae metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA640945. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN15346752
sample name
NAPP22-1_SAMN15346752_MAG_00000059
scientific_name
Litoreibacter sp.
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach