ENA first public
2026-04-30
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
MARK18-1_SAMN08606351_MAG_00000027
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2015-08
completeness score
91.33
completeness software
CheckM v1.1.3
contamination score
4.87
environmental medium
not provided
geographic location (country and/or sea)
Finland
geographic location (latitude)
59.85333300
geographic location (longitude)
23.27194400
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
not provided
metagenomic source
marine metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA435478. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN08606351
sample name
MARK18-1_SAMN08606351_MAG_00000027
scientific_name
Algoriphagus sp.
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach