ENA first public
2026-04-30
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
LIUR22-1_SAMN17320291_MAG_00000101
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2016-12-01
completeness score
95.77
completeness software
Anvio 7.1
contamination score
1.41
environmental medium
not provided
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
11.40370000
geographic location (longitude)
142.36300000
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
not provided
metagenomic source
marine sediment metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA692099. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN17320291
sample name
LIUR22-1_SAMN17320291_MAG_00000101
scientific_name
Pseudomonadota bacterium
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach