Metagenome-assembled genome: TIMM21-1_SAMN15655971_MAG_00000039
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23499137 of study PRJEB73239.
assembly software
metaSPAdes 3.14
broad-scale environmental context
not provided
collection date
2017-05-26
sample derived from
SAMN15655971
geographic location (longitude)
missing: third party data
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth  --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
contamination score
0.0
completeness software
Anvio 7.1
geographic location (country and/or sea)
USA
binning software
MetaBAT2 + co-abundance
organism
Gammaproteobacteria bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
83.1
environmental medium
not provided
geographic location (latitude)
missing: third party data
scientific_name
Gammaproteobacteria bacterium
investigation type
metagenome-assembled genome
local environmental context
not provided
metagenomic source
marine metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA649049. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sequencing method
ILLUMINA
isolation_source
marine metagenome