Metagenome-assembled genome: SHIN18-1_SAMEA104707374_MAG_00000087
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23499010 of study PRJEB73217.
ENA first public
2026-05-02
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
SHIN18-1_SAMEA104707374_MAG_00000087
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2016-11-15
completeness score
94.4
completeness software
CheckM v1.1.3
contamination score
2.96
environmental medium
not provided
geographic location (country and/or sea)
South Korea
geographic location (latitude)
35.03247222
geographic location (longitude)
126.39011111
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
not provided
metagenomic source
marine sediment metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJEB25358. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMEA104707374
sample name
SHIN18-1_SAMEA104707374_MAG_00000087
scientific_name
Thiotrichales bacterium
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach