Metagenome-assembled genome: YOSH21-1_SAMD00070353_MAG_00000004
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23500945 of study PRJEB73256.
assembly software
metaSPAdes 3.14
broad-scale environmental context
not provided
collection date
2012-05-18
sample derived from
SAMD00070353
geographic location (longitude)
141.31670000
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth  --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
contamination score
0.0
completeness software
Anvio 7.1
geographic location (country and/or sea)
Japan
binning software
MetaBAT2 + co-abundance
organism
Pontimonas sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
97.18
environmental medium
not provided
geographic location (latitude)
37.97550000
scientific_name
Pontimonas sp.
investigation type
metagenome-assembled genome
local environmental context
not provided
metagenomic source
marine metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJDB5375. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sequencing method
ILLUMINA
isolation_source
marine metagenome