Metagenome-assembled genome: SPET22-1_SAMN18353076_MAG_00000016
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23499183 of study PRJEB73229.
assembly software
metaSPAdes 3.14
broad-scale environmental context
not provided
collection date
2015-04-18
sample derived from
SAMN18353076
geographic location (longitude)
-108.86227300
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth  --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
contamination score
8.45
completeness software
Anvio 7.1
geographic location (country and/or sea)
Pacific Ocean
binning software
MetaBAT2 + co-abundance
organism
Candidatus Omnitrophota bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
50.7
environmental medium
not provided
geographic location (latitude)
23.95704300
scientific_name
Candidatus Omnitrophota bacterium
investigation type
metagenome-assembled genome
local environmental context
not provided
metagenomic source
hydrothermal vent metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA713414. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sequencing method
ILLUMINA
isolation_source
hydrothermal vent metagenome