Metagenome-assembled genome: SANT17-1_SAMN02924041_MAG_00000050
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23496429 of study PRJEB73205.
ENA first public
2026-05-02
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
SANT17-1_SAMN02924041_MAG_00000050
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2008-09
completeness score
50.0
completeness software
CheckM v1.1.3
contamination score
1.72
environmental medium
not provided
geographic location (country and/or sea)
Brazil
geographic location (latitude)
-12.46000000
geographic location (longitude)
-31.30000000
investigation type
metagenome-assembled genome
isolation_source
lake water metagenome
local environmental context
not provided
metagenomic source
lake water metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA254927. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN02924041
sample name
SANT17-1_SAMN02924041_MAG_00000050
scientific_name
Candidatus Nanopelagicales bacterium
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach