assembly software
metaSPAdes 3.14
broad-scale environmental context
not provided
collection date
2016-07-23
sample derived from
SAMN16252683
geographic location (longitude)
142.22800000
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth  --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
contamination score
0.0
completeness software
Anvio 7.1
geographic location (country and/or sea)
Pacific Ocean
binning software
MetaBAT2 + co-abundance
organism
Myxococcales bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
91.55
environmental medium
not provided
geographic location (latitude)
11.60200000
scientific_name
Myxococcales bacterium
investigation type
metagenome-assembled genome
local environmental context
not provided
metagenomic source
marine sediment metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA635214. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sequencing method
ILLUMINA
isolation_source
marine sediment metagenome