Rhizosphere community metatranscriptomics
metagenome
Analysis of community structure in the rhizosphere of crop plants
ENA-FIRST-PUBLIC
2013-04-25T17:02:36Z
ENA-LAST-UPDATE
2018-03-09T10:13:29Z
External Id
SAMEA1879425
INSDC center name
JIC
INSDC first public
2013-04-25T17:02:36Z
INSDC last update
2018-03-09T10:13:29Z
INSDC status
public
Submitter Id
B111
collection date
2009-03
current land use
experimental farm plot
current vegetation
fallow field
depth
0.01
environment (biome)
farm
environment (feature)
soil
environment (material)
soil
geographic location (countryand/orsea,region)
United Kingdom
geographic location (elevation)
12
geographic location (latitude)
52°62'29”
geographic location (longitude)
1°21'81”
investigation type
metagenome
nucleic acid amplification
Whole transcriptome amplification (Rubicon geneomics)
nucleic acid extraction
Powersoil RNA isolation
other
149 mg/kg nitrate (NO3-) 171 mg/kg phosphate (PO43-) 184mg/kg potassium (K+) 60mg/kg magnesium (Mg2+)
ph
7.49
project name
Rhizosphere metatranscriptomics
sample name
B111
sample weight for DNA extraction
1
scientific_name
metagenome
sequencing method
454 FLX titanium
soil environmental package
soil
storage conditions (fresh/frozen/other)
fresh
total organic carbon
0.23