reindeer_dental_calculus
oral metagenome
Reindeer dental calculus metagenome: sample Rt1
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:11:06Z
External Id
SAMEA6818278
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:11:06Z
INSDC status
public
Submitter Id
Rt1
adapters
CAAGCAGAAGACGGCATACGAGATAGATGGCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACCCTAGGTACACTCTTTCCCTACACGACGCTCTT
collection date
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Svalbard
geographic location (region and locality)
Spitsbergen
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
reindeer
host subject id
614691
host taxid
9870
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
248674
library size
14800000000
multiplex identifiers
TGGCCAT,TGGCCAT
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Rt1
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Rt1