metagenomic_bin_from_brown_bear_dental_calculus
uncultured Streptococcus sp.
This sample represents a metagenomic bin from the metagenomic sample ERS4545914
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-11T13:16:49Z
External Id
SAMEA6823516
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-11T13:16:49Z
INSDC status
public
MAG coverage software
BBMap v38.08
Submitter Id
Ua9.2
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT v1.1.2
binning parameters
coverage and kmer
binning software
MetaBAT2 v2.12.1
collection date
1942
completeness score
96.59
completeness software
CheckM v1.0.12
contamination score
0.59
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Sweden
investigation type
metagenome
isolation source
dental calculus
metagenomic source
oral metagenome
project name
Wild mammalian dental calculus microbiome
sample derived from
ERS4545914
sample name
Ua9.2
scientific_name
uncultured Streptococcus sp.
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Ua9
taxonomic classification
GTDB-Tk v1.1.1 (GTDB release 89, default parameters, classification rank genus)
taxonomic identity marker
multi-marker approach