brown_bear_dental_calculus
oral metagenome
Brown bear dental calculus metagenome: sample Ua13
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:10:27Z
External Id
SAMEA6818275
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:10:27Z
INSDC status
public
Submitter Id
Ua13
adapters
CAAGCAGAAGACGGCATACGAGATAGATGGCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACGCTCGAAACACTCTTTCCCTACACGACGCTCTT
collection date
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Russia
geographic location (region and locality)
Lake Ladoga
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
brown bear
host subject id
583103
host taxid
9644
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
2210894
library size
51900000000
multiplex identifiers
GGTATCG,GGTATCG
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Ua13
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Ua13