Generic sample from mouse gut metagenome
mouse gut metagenome
pool sample: Non-typhoidal Salmonella infections are a major cause of diarrhea.              Acute symptoms cease rapidly, but some patients keep shedding NTS for weeks or months - representing subclinical carriers and transmitters. The factors preventing this 'asymptomatic excretor' state are poorly understood, but of high clinical and epidemiological importance.              Here, we analyzed the parameters controlling clearance of an acute NTS infection in mice.             BARCODE_INDEX = {1:TAGC, 2:TCGA, 3:TCGC, 4:TAGA, 5:TGCA, 6:ATCG, 7:AGCT, 8:AGCG, 9:ATCT, 10:ACGT, 11:GATC, 12:GCTA, 13:GCTC, 14:GATA, 15:GTCA, 16:CAGT, 17:CTGA, 18:CAGA, 19:CTGT, 20:CGTA}             REGION_1 = {1:Input_RK69, 2:Pellet_RK69, 3:Donor_I_TV1012_CON, 4:Beads_RK69, 5:Eluat_Reg_RK69, 6:Beads_RK69, 7:Eluat_Reg_RK69, 8:US_RK75, 9:B727-1_CON, 10:B728-1_CON, 11:B729-1_CON, 12:B730-1_CON, 13:B731-1_CON, 14:B732-1_CON, 15:FB727-Day_1_BSA, 16:FB728-Day_1_BSA, 17:FB729-Day_1_BSA, 18:FB730-Day_1_RegIIIbeta, 19:FB731-Day_1_RegIIIbeta, 20:FB732-Day_1_RegIIIbeta}             REGION_2 = {1:Donor_1_TV973_C_donor_day_0, 2:Donor_TV973_C_donor_day_83, 3:B896_TV973_L-C_day_80, 4:B897_TV973_L-C_day_80, 5:B899_TV973_L-C_day_80, 6:B900_TV973_L-C_day_80, 7:B902_TV973_L-C_day_80, 8:B903_TV973_L-C_day_80, 9:B905_TV973_L_day_80, 10:B906_TV973_L_day_80, 11:B907_TV973_L_day_80, 12:B908_TV973_L_day_80, 13:B208_day_2_TV907_L_day_2, 14:B209_day_2_TV907_L_day_2, 15:B210_day_2_TV907_L_day_2, 16:B211_day_2_TV907_L_day_2, 17:B213_day_40_TV907_L_day_40, 18:B214_day_40_TV907_L_day_40, 19:B214_day_40_TV907_L_day_40, 20:B214_day_40_TV907_L_day_40}           