reindeer_tooth_surface
oral metagenome
Reindeer tooth surface metagenome
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:12:03Z
External Id
SAMEA6818283
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:12:03Z
INSDC status
public
Submitter Id
Rt_tooth
adapters
CAAGCAGAAGACGGCATACGAGATTGGACGTGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT
collection date
1958
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
tooth
geographic location (country and/or sea)
Svalbard
geographic location (region and locality)
Spitsbergen
host body habitat
oral cavity
host body site
tooth
host common name
reindeer
host subject id
618317
host taxid
9870
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
31273755
library size
694000000000
multiplex identifiers
CAATTGC,CAATTGC
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Rt_tooth
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
T2