gorilla_dental_calculus
oral metagenome
Gorilla dental calculus metagenome: sample Gb1; surface decontamination: EDTA wash
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:08:58Z
External Id
SAMEA6818268
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:08:58Z
INSDC status
public
Submitter Id
Gb1-wash
adapters
CAAGCAGAAGACGGCATACGAGATCCAGGTTGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACCTCTGCAACACTCTTTCCCTACACGACGCTCTT
collection date
1926
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Democratic Republic of the Congo
geographic location (region and locality)
Karisimbi
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
eastern mountain gorilla
host subject id
8607
host taxid
1159185
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
35470589
library size
559000000000
multiplex identifiers
CGATGTA,CGATGTA
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Gb1-wash
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Gb1