gorilla_dental_calculus
oral metagenome
Gorilla dental calculus metagenome: sample Gb1; surface decontamination: UV exposure
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:08:42Z
External Id
SAMEA6818267
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:08:42Z
INSDC status
public
Submitter Id
Gb1-uv
adapters
CAAGCAGAAGACGGCATACGAGATAGATGGCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACTCGCAGGACACTCTTTCCCTACACGACGCTCTT
collection date
1926
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Democratic Republic of the Congo
geographic location (region and locality)
Karisimbi
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
eastern mountain gorilla
host subject id
8607
host taxid
1159185
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
13721533
library size
232000000000
multiplex identifiers
GTCATAC,GTCATAC
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Gb1-uv
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Gb1