metagenomic_bin_from_gorilla_dental_calculus
uncultured Neisseria sp.
This sample represents a metagenomic bin from the metagenomic sample ERS4545905
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-11T13:16:49Z
External Id
SAMEA6823501
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-11T13:16:49Z
INSDC status
public
MAG coverage software
BBMap v38.08
Submitter Id
Gb1wash.3
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT v1.1.2
binning parameters
coverage and kmer
binning software
MetaBAT2 v2.12.1
collection date
1926
completeness score
81.21
completeness software
CheckM v1.0.12
contamination score
2.11
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Democratic Republic of the Congo
investigation type
metagenome
isolation source
dental calculus
metagenomic source
oral metagenome
project name
Wild mammalian dental calculus microbiome
sample derived from
ERS4545905
sample name
Gb1wash.3
scientific_name
uncultured Neisseria sp.
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Gb1
taxonomic classification
GTDB-Tk v1.1.1 (GTDB release 89, default parameters, classification rank genus)
taxonomic identity marker
multi-marker approach