human oral metagenome
ecotype
In vitro biofilm
collection_date
2018-09-12
env_broad_scale
mouth environment [ENVO:08000002] | mouth [UBERON:0000165]
env_local_scale
organism substance [UBERON:0000463]
env_medium
saliva [UBERON:0001836]
geo_loc_name
Belgium:Ghent
host
Homo sapiens
isol_growth_condt
24 well plate, modified M9 carbom limiting medium, microaerophilic (flushed with 90% N2, 10% CO2 then 6% 02 added
lat_lon
51.053403 N 3.708352 E
biotic_relationship
commensal
host_sex
female
host_disease
healthy
host_tissue_sampled
saliva
organism_count
not available
oxy_stat_samp
anaerobic
perturbation
incubated with 1% xylitol for 48 hours
rel_to_oxygen
microaerophilic
samp_collect_device
spitting
samp_vol_we_dna_ext
Biofilm scrapped from the plate bottom diluted in 1ml PBS
temp
37oC
time_last_toothbrush
at least 3 hours before
pH
6.816666667
Lactate (mM)
0.092136619
Formate (mM)
0.057617831
Acetate (mM)
3.151305241
Propionate (mM)
0.164036804
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-oral