brown_bear_dental_calculus
oral metagenome
Brown bear dental calculus metagenome: sample Ua14
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:10:47Z
External Id
SAMEA6818276
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:10:47Z
INSDC status
public
Submitter Id
Ua14
adapters
CAAGCAGAAGACGGCATACGAGATCCAGGTTGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT
collection date
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Sweden
geographic location (region and locality)
Dalarna
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
brown bear
host subject id
583083
host taxid
9644
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
25584774
library size
773000000000
multiplex identifiers
TTACAGT,TTACAGT
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Ua14
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Ua14