MIGS Cultured Bacterial/Archaeal sample from Atopobium rimae ATCC 49626
Lancefieldella rimae ATCC 49626
Atopobium rimae is a gram-positive, rod-shaped bacterium found in the gingival crevice and associated with periodontitis.
finishing strategy (depth of coverage)
Level 6: Finished10-20x;9
collection date
not determined
estimated_size
1626000
isol_growth_condt
not determined
specific host
Homo sapiens
project_type
Reference Genome
lat_lon
not determined
biome
terrestrial biome [ENVO:00000446]
misc_param: HMP body site
not determined
nucleic acid extraction
not determined
investigation type
missing
feature
human-associated habitat [ENVO:00009003]
host taxid
9606
project_name
Atopobium rimae ATCC 49626
assembly
Newbler 1.1.03.24-64-7
geo_loc_name
not determined
source_mat_id
ATCC 49626, VPI D140H-11A
material
biological product [ENVO:02000043]
ref_biomaterial
not determined
misc_param: HMP supersite
oral
num_replicons
not determined
sequencing method
not determined
sop
http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
strain
ATCC 49626
environmental package
missing
culture-collection
ATCC:49626
isolation-source
missing
type-material
type strain of Lactobacillus rimae
BioSampleModel
MIGS.ba