Bos taurus
Pooled DNA from 5 cattle - Cattle were diagnosed with metabolic disease
Common Name
cattle
Sample Name
group6
Scientific Name
Bos taurus
Submission description
This study targeted the bovine collagenous lectins, ficolins, MASP genes, and peptidoglycan recognition proteins of cattle. Hepatic DNA was sourced from 120 cattle presenting for postmortem examination at the University of Guelph. The animals were divided into pools of 5 animals each based on the similarity of postmortem diagnosis and all pools were sequenced on an Illumina MiSeq. Variants were called using GATK and allele frequency analysis performed using Popoolation2.
Submission identifier
GSB-74
Submission title
Targeted re-sequencing of the bovine collagenous lectins and peptidoglycan recognition proteins
collected_by
Russell S. Fraser
geographic location (country and/or sea)
Canada
geographic location (region and locality)
Guelph, Ontario
tissue_type
liver