reindeer_dental_calculus
oral metagenome
Reindeer dental calculus metagenome: sample Rt11
ENA-FIRST-PUBLIC
2020-06-01T17:05:29Z
ENA-LAST-UPDATE
2020-05-07T14:11:44Z
External Id
SAMEA6818281
INSDC center name
UPPSALA UNIVERSITY
INSDC first public
2020-06-01T17:05:29Z
INSDC last update
2020-05-07T14:11:44Z
INSDC status
public
Submitter Id
Rt11
adapters
CAAGCAGAAGACGGCATACGAGATACCAACGGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACGCTCGAAACACTCTTTCCCTACACGACGCTCTT
collection date
1950
environment (biome)
mammalian host
environment (feature)
mouth
environment (material)
dental calculus
geographic location (country and/or sea)
Norway
geographic location (region and locality)
South-west Norway
host body habitat
oral cavity
host body product
dental calculus
host body site
tooth
host common name
reindeer
host subject id
614671
host taxid
9870
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.
library reads sequenced
31750467
library size
652000000000
multiplex identifiers
CAATTGC,CAATTGC
nucleic acid extraction
Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758�15763.
project name
Wild mammalian dental calculus microbiome
sample name
Rt11
scientific_name
oral metagenome
sequencing method
Illumina HiSeq 2500 paired end
source material identifiers
Rt11