marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755443
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.325.B
alt_elev
0
area
North Atlantic
basin
Atlantic Ocean
collection_timestamp
2014-06-15
core
Geob18533-1-2
deployment
Geob18533-1
depth
3907.0
distance_to_coast
582.268
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
MSM39
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
33.5
geo loc name
Atlantic Ocean:North Atlantic,MSM39
host subject id
DSMP_325
impact
0
investigation type
MIMARKS-survey
lat lon
44.2415 N 46.4125 W
latitude
44.2415
longitude
-46.4125
marker
V1V2
molecule
DNA
ng_per_pooled_samp
20.0
nodule_density
0.0
nodule_size
0.0
npp_month
946.1740722999999
npp_year
755.0064748
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
missing: not provided
poc_flux_month
0.0051368740000000005
poc_flux_year
0.00499535
project name
DSMP
province
SE Grand Banks
pseudoreplicate
Geob18533-1-2-1
rel_to_oxygen
aerobe
replicate
B
samp mat process
Freezer -20C
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.325.B
sample type
marine sediment
sediment_sample
325
station
Geob18533
submitted to INSDC
No