marine metagenome
This sample (TARA_N000003118) was collected during the Tara Oceans expedition (2009-2013) at station TARA_142 (latitudeN=25.6236, longitudeE=-88.45) on date/time=2012-01-10T14:49:35, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 636-645 m, targeting a mesopelagic zone (ENVO:00000213) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-3 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis.
Chlorophyll Sensor
0.008069
Citation
tbd
ENA first public
2015-05-05
ENA last update
2015-11-04
Event Date/Time End
2012-01-10T20:15
External Id
SAMEA2623523
INSDC center alias
GSC
INSDC center name
Genoscope
INSDC first public
2015-05-05T17:02:08Z
INSDC last update
2015-11-04T11:48:16Z
INSDC status
public
Latitude End
25.6405
Longitude End
-88.4085
Salinity Sensor
35.165658
Submitter Id
TARA_N000003118
depth
640
environment (biome)
marine biome (ENVO:00000447)
environment (feature)
mesopelagic zone (ENVO:00000213)
environment (material)
particulate matter, including plankton (ENVO:xxxxxxxx)
environmental package
water
event date/time start
2012-01-10T14:49:35
event label
TARA_20120110T1451Z_142_Combined-EVENTS_CAST
further details
tbd
last update date
2014-05-01Z
latitude start
25.6236
longitude start
-88.45
marine region
(search radius=5 degrees) Marine Province:Warm Temperate Northwest Atlantic (MRGID:21751), Marine Ecoregion:Southern Gulf of Mexico (MRGID:21983), Marine Ecoregion:Northern Gulf of Mexico (MRGID:22002)
nitrate sensor
31.851193
oxygen sensor
108.240083
project name
Tara Oceans expedition (2009-2013)
protocol label
PROT_NUC-RNA(100L)_W0.8-3
sample collection device
ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles
sample name
TARA_N000003118
sample status
This version can be used to provide data discovery services
sampling campaign
TARA_20111230Z
sampling platform
SV Tara
sampling station
TARA_142
size fraction lower threshold
0.8
size fraction upper threshold
3
temperature
9.756257