human oral metagenome
Patient_5 Lesion T20
ENA-FIRST-PUBLIC
2018-08-29T17:02:02Z
ENA-LAST-UPDATE
2018-04-13T11:07:03Z
External Id
SAMEA104229839
INSDC center name
GFBIO
INSDC first public
2018-08-29T17:02:02Z
INSDC last update
2018-04-13T11:07:03Z
INSDC status
public
Submitter Id
2551:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
broker name
GFBIO
chimera check
Uchime
collection date
2016-12-19
environment (biome)
anthropogenic terrestrial biome [ENVO:01000219]
environment (feature)
mouth [UBERON:0000165]
environment (material)
mouth mucosa [UBERON:0003729]
geographic location (country and/or sea)
Belgium
geographic location (latitude)
51.0256
geographic location (longitude)
3.72885
host age
11
host body site
Epithelium of mucosa of mouth
host disease status
Acute promyelocytic leukemia
host sex
female
host subject id
P5
human oral environmental package
human-oral
investigation type
mimarks-survey
nose/mouth/teeth/throat disorder
Mucositis grade 2
nucleic acid extraction
PMID 22515215
pcr conditions
initial denaturation:96degC_2min; annealing:96degC_15s; elongation: 50degC_50s; final elongation:70degC_90s
pcr primers
FWD:NNNNNNNNNTCCTACGGGNGGCWGCAG; REV:NNNNNNNNNNTGACTACHVGGGTATCTAAKCC
project name
Patientstudy_oral_mucositis
sample name
2551:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
sample storage temperature
-20
scientific_name
human oral metagenome
sequencing method
Illumina sequencing
target gene
16S rRNA
target subfragment
V3-V4