human oral metagenome
Patient_1 Buccal T6
ENA-FIRST-PUBLIC
2018-08-29T17:02:02Z
ENA-LAST-UPDATE
2018-04-13T11:07:03Z
External Id
SAMEA104229702
INSDC center name
GFBIO
INSDC first public
2018-08-29T17:02:02Z
INSDC last update
2018-04-13T11:07:03Z
INSDC status
public
Submitter Id
2414:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
broker name
GFBIO
chimera check
Uchime
collection date
2015-07-31
environment (biome)
anthropogenic terrestrial biome [ENVO:01000219]
environment (feature)
mouth [UBERON:0000165]
environment (material)
mouth mucosa [UBERON:0003729]
geographic location (country and/or sea)
Belgium
geographic location (latitude)
51.0256
geographic location (longitude)
3.72885
host age
8
host body site
Epithelium of mucosa of mouth
host disease status
Burkitt lymphoma
host sex
male
host subject id
P1
human oral environmental package
human-oral
investigation type
mimarks-survey
nucleic acid extraction
PMID 22515215
pcr conditions
initial denaturation:96degC_2min; annealing:96degC_15s; elongation: 50degC_50s; final elongation:70degC_90s
pcr primers
FWD:NNNNNNNNNTCCTACGGGNGGCWGCAG; REV:NNNNNNNNNNTGACTACHVGGGTATCTAAKCC
project name
Patientstudy_oral_mucositis
sample name
2414:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
sample storage temperature
-20
scientific_name
human oral metagenome
sequencing method
Illumina sequencing
target gene
16S rRNA
target subfragment
V3-V4