marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755145
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.176.B
alt_elev
0
area
Mid Atlantic
basin
Atlantic Ocean
c_perc
0.53
cn
0.35
collection_timestamp
2015-01-08
core
SO237_08-10
deployment
SO237_08-10
depth
5117.0
distance_to_coast
1187.07
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
VEMA
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
1.58
geo loc name
Atlantic Ocean:Mid Atlantic,VEMA
host subject id
DSMP_176
impact
0
investigation type
MIMARKS-survey
lat lon
10.70967 N 42.68317 W
latitude
10.70967
longitude
-42.683170000000004
marker
V1V2
molecule
DNA
mud
89.556
n_perc
1.51
ng_per_pooled_samp
30.0
nodule_density
0.0
nodule_size
0.0
npp_month
337.43304439999997
npp_year
378.9784749
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
TRUE
poc_flux_month
0.004906738
poc_flux_year
0.0045971729999999995
project name
DSMP
province
West Basin
pseudoreplicate
SO237_08-10-2
rel_to_oxygen
aerobe
replicate
B
samp mat process
lifeguard preservation solution
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.176.B
sample type
marine sediment
sand
10.444
sediment_sample
176
station
SO237_08
submitted to INSDC
No