marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755496
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:22Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.353.A
alt_elev
0
area
South Atlantic
basin
Atlantic Ocean
c_perc
0.85
cn
6.56
collection_timestamp
2009-08-05
core
M79_1/4/598
deployment
M79_1/4/598
depth
5186.9
distance_to_coast
475.805
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
DIVA3
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
8.51
geo loc name
Atlantic Ocean:South Atlantic,DIVA3
host subject id
DSMP_353
impact
0
investigation type
MIMARKS-survey
lat lon
3.9496667 S 28.0855 W
latitude
-3.9496667000000003
longitude
-28.0855
marker
V1V2
molecule
DNA
mud
99.52
n_perc
0.13
ng_per_pooled_samp
30.0
nodule_burial
1.0
nodule_density
1.0
nodule_size
1.0
npp_month
356.3268738
npp_year
292.0571887
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
TRUE
poc_flux_month
0.004961702
poc_flux_year
0.004574681
project name
DSMP
province
Brazilian Basin
pseudoreplicate
M79_1/4/598
rel_to_oxygen
aerobe
replicate
A
samp mat process
Freezer -20C
samp_collect_device
multiple corer
samp_size
c.a. 10 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.353.A
sample type
marine sediment
sand
0.48
sediment_sample
353
station
M79_1/4/598
submitted to INSDC
No