marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755333
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.274.A
alt_elev
0
area
Southern Ocean
basin
Atlantic Ocean
collection_timestamp
2012-03-04
core
175-8-core2
deployment
175-8
depth
4154.5
distance_to_coast
367.272
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
SYSTCOII
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
21.7
geo loc name
Atlantic Ocean:Southern Ocean,SYSTCOII
host subject id
DSMP_274
impact
0
investigation type
MIMARKS-survey
lat lon
50.7766667 S 39.4231667 W
latitude
-50.7766667
longitude
-39.4231667
marker
V1V2
molecule
DNA
mud
18.85
ng_per_pooled_samp
50.0
nodule_density
0.0
nodule_size
0.0
npp_month
886.6518555
npp_year
817.7908263999999
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
missing: not provided
poc_flux_month
0.004689083
poc_flux_year
0.004139618
project name
DSMP
province
SG
pseudoreplicate
175-8-core2-3
rel_to_oxygen
aerobe
replicate
A
samp mat process
Freezer -80C
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.274.A
sample type
marine sediment
sand
81.15
sediment_sample
274
station
175
submitted to INSDC
No