Mus musculus
16S rDNA from stool/cecum microbiota samples
ENA first public
2015-05-06
ENA last update
2016-10-21
External Id
SAMEA2603620
INSDC center alias
COPENHAGEN UNIVERSITY
INSDC center name
COPENHAGEN UNIVERSITY
INSDC first public
2015-05-06T17:01:17Z
INSDC last update
2016-10-21T09:39:00Z
INSDC status
public
Submitter Id
Lund Chronic Parasite 2014_31
collection date
2013-06
common name
house mouse
environment (biome)
Terrestrial biome ENVO:00000446
environment (feature)
mammalia-associated habitat ENVO:00009002
environment (material)
organic material ENVO:01000155
geographic location (country and/or sea)
Sweden
geographic location (latitude)
43.63871944444445
geographic location (longitude)
-116.2413513485235
host body site
Colon content
host common name
C57BL/6
host diet
Chow
host sex
male
host taxid
10090
host-associated environmental package
host-associated
investigation type
metagenome
library construction method
Caporaso et al. 2012-The ISME Journal (2012) 6, 1621-1624
miscellaneous parameter
Infected day 0
nucleic acid extraction
Macheray-Nagel NucleoSpin Soil DNA Extraction Kit (doi:101371/journal.pone.0067699)
pcr primers
515f (AATGATACGGCGACCACCGAGATCTACAC TATGGTAATT GT GTGCCAGCMGCCGCGGTAA) and 806r published by Caporaso et al. 2012-The ISME Journal (2012) 6, 1621-1624
project name
Lund Chronic Parasite 2014
sample name
Lund Chronic Parasite 2014_31
sample storage temperature
-80
sequencing method
Illumina Miseq