marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755118
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.154.A
alt_elev
0
area
Mid Atlantic
basin
Atlantic Ocean
c_perc
0.74
cn
2.96
collection_timestamp
2014-12-20
core
SO237_03-5
deployment
SO237_03-5
depth
5508.0
distance_to_coast
455.25300000000004
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
VEMA
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
25.8
geo loc name
Atlantic Ocean:Mid Atlantic,VEMA
host subject id
DSMP_154
impact
0
investigation type
MIMARKS-survey
lat lon
10.7195 N 25.06467 W
latitude
10.7195
longitude
-25.06467
marker
V1V2
molecule
DNA
mud
88.619
n_perc
0.25
ng_per_pooled_samp
40.0
nodule_density
0.0
nodule_size
0.0
npp_month
354.10455319999994
npp_year
396.199852
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
TRUE
poc_flux_month
0.004355043
poc_flux_year
0.004542128
project name
DSMP
province
East Basin
pseudoreplicate
SO237_03-5-1
rel_to_oxygen
aerobe
replicate
A
samp mat process
lifeguard preservation solution
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.154.A
sample type
marine sediment
sand
11.380999999999998
sediment_sample
154
station
SO237_03
submitted to INSDC
No