human oral metagenome
Patient_2 Saliva T6
ENA-FIRST-PUBLIC
2018-08-29T17:02:02Z
ENA-LAST-UPDATE
2018-04-13T11:07:03Z
External Id
SAMEA104229715
INSDC center name
GFBIO
INSDC first public
2018-08-29T17:02:02Z
INSDC last update
2018-04-13T11:07:03Z
INSDC status
public
Submitter Id
2427:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
broker name
GFBIO
chimera check
Uchime
collection date
2015-09-10
environment (biome)
anthropogenic terrestrial biome [ENVO:01000219]
environment (feature)
mouth [UBERON:0000165]
environment (material)
saliva [UBERON:0001836]
geographic location (country and/or sea)
Belgium
geographic location (latitude)
51.0256
geographic location (longitude)
3.72885
host age
10
host body product
saliva
host disease status
Burkitt lymphoma
host sex
male
host subject id
P2
human oral environmental package
human-oral
investigation type
mimarks-survey
nose/mouth/teeth/throat disorder
Mucositis grade 2
nucleic acid extraction
PMID 22515215
pcr conditions
initial denaturation:96degC_2min; annealing:96degC_15s; elongation: 50degC_50s; final elongation:70degC_90s
pcr primers
FWD:NNNNNNNNNTCCTACGGGNGGCWGCAG; REV:NNNNNNNNNNTGACTACHVGGGTATCTAAKCC
project name
Patientstudy_oral_mucositis
sample name
2427:c9df40ed-d1b8-46cc-abd4-bfd18db285b0
sample storage temperature
-20
scientific_name
human oral metagenome
sequencing method
Illumina sequencing
target gene
16S rRNA
target subfragment
V3-V4