marine metagenome
This sample (TARA_N000003104) was collected during the Tara Oceans expedition (2009-2013) at station TARA_142 (latitudeN=25.6168, longitudeE=-88.4532) on date/time=2012-01-09T20:17:16, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 121-130 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-5 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000003103.
Chlorophyll Sensor
0.164483
Citation
tbd
ENA first public
2015-05-05
ENA last update
2015-11-04
Event Date/Time End
2012-01-09T23:33
External Id
SAMEA2623504
INSDC center alias
GSC
INSDC center name
Genoscope
INSDC first public
2015-05-05T17:02:08Z
INSDC last update
2015-11-04T11:48:21Z
INSDC status
public
Latitude End
25.7109
Longitude End
-88.4916
Salinity Sensor
36.172194
Submitter Id
TARA_N000003104
depth
125
environment (biome)
marine biome (ENVO:00000447)
environment (feature)
deep chlorophyll maximum layer (ENVO:xxxxxxxx)
environment (material)
particulate matter, including plankton (ENVO:xxxxxxxx)
environmental package
water
event date/time start
2012-01-09T20:17:16
event label
TARA_20120109T2019Z_142_Combined-EVENTS_CAST
further details
tbd
last update date
2014-05-01Z
latitude start
25.6168
longitude start
-88.4532
marine region
(search radius=5 degrees) Marine Province:Warm Temperate Northwest Atlantic (MRGID:21751), Marine Ecoregion:Southern Gulf of Mexico (MRGID:21983), Marine Ecoregion:Northern Gulf of Mexico (MRGID:22002)
nitrate sensor
0.439852
oxygen sensor
192.971638
project name
Tara Oceans expedition (2009-2013)
protocol label
PROT_NUC-RNA(100L)_W0.8-5
sample collection device
ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles
sample name
TARA_N000003104
sample status
This version can be used to provide data discovery services
sampling campaign
TARA_20111230Z
sampling platform
SV Tara
sampling station
TARA_142
size fraction lower threshold
0.8
size fraction upper threshold
5
temperature
24.948842