marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755456
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.331.A
alt_elev
0
area
Southern Ocean
basin
Atlantic Ocean
collection_timestamp
2012-02-01
core
86-26-core2
deployment
86-26
depth
3966.2
distance_to_coast
1061.59
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
SYSTCOII
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
10.1
geo loc name
Atlantic Ocean:Southern Ocean,SYSTCOII
host subject id
DSMP_331
impact
0
investigation type
MIMARKS-survey
lat lon
51.9811667 S 12.0626667 W
latitude
-51.9811667
longitude
-12.0626667
marker
V1V2
molecule
DNA
mud
9.09
ng_per_pooled_samp
40.0
nodule_density
0.0
nodule_size
0.0
npp_month
617.9683838
npp_year
278.3981159
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
missing: not provided
poc_flux_month
0.005009348
poc_flux_year
0.004394792
project name
DSMP
province
HC_BEP
pseudoreplicate
86-26-core2-3
rel_to_oxygen
aerobe
replicate
A
samp mat process
Freezer -80C
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.331.A
sample type
marine sediment
sand
90.91
sediment_sample
331
station
86
submitted to INSDC
No