marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755339
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.277.A
alt_elev
0
area
CCFZ
basin
Pacific Ocean
collection_timestamp
2012-04-25
core
BIO12-102KG
deployment
BIO12-102KG
depth
4979.0
distance_to_coast
1705.65
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
BIO12
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
8.77
geo loc name
Pacific Ocean:CCFZ,BIO12
host subject id
DSMP_277
impact
0
investigation type
MIMARKS-survey
lat lon
14.0712754 N 130.11776 W
latitude
14.071275400000001
longitude
-130.11776
marker
V1V2
molecule
DNA
ng_per_pooled_samp
30.0
nodule_burial
0.0
nodule_density
18.4
nodule_size
3.0
npp_month
486.90084840000003
npp_year
364.7968966
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
missing: not provided
poc_flux_month
0.0048449109999999995
poc_flux_year
0.004203148
project name
DSMP
province
IFREMER
pseudoreplicate
BIO12-102KG
rel_to_oxygen
aerobe
replicate
A
samp mat process
lifeguard preservation solution
samp_collect_device
box corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.277.A
sample type
marine sediment
sediment_sample
277
station
BIO12-102KG
submitted to INSDC
No