marine sediment metagenome
Meta-omics study of the global deep-sea benthic diversity with focus on the Clarion-Clipperton Fracture Zone
ENA first public
2020-07-03
ENA-LAST-UPDATE
2022-01-13
External Id
SAMEA5755196
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2020-07-03T04:03:13Z
INSDC last update
2022-01-13T13:25:21Z
INSDC status
suppressed
Submitter Id
qiita_sid_12249:12249.V1V2.DNA.211.B
alt_elev
0
area
North Pacific
basin
Pacific Ocean
c_perc
0.98
collection_timestamp
2012-08-08
core
SO223-4-8
deployment
SO223-4-8
depth
5763.0
distance_to_coast
139.541
dna_extracted
True
elevation
missing: not collected
empo_1
free-living
empo_2
saline
empo_3
sediment (saline)
env biome
marine abyssal zone biome
env feature
marine oligotrophic desert
env package
sediment
env_material
mud
expedition
KuramBio
experimental_factor
gene|marine metagenome|uncultured microorganism|uncultured organism|ecotype|biological replicate|technical replicate|interspecies interaction between organisms
extract_concentration
48.9
geo loc name
Pacific Ocean:North Pacific,KuramBio
host subject id
DSMP_211
impact
0
investigation type
MIMARKS-survey
lat lon
46.96633 N 154.54067 E
latitude
46.96633
longitude
154.54067
marker
V1V2
molecule
DNA
mud
100.0
ng_per_pooled_samp
30.0
nodule_density
0.0
nodule_size
0.0
npp_month
1416.622253
npp_year
759.4697557999999
physical_specimen_location
Pawlowski Lab
physical_specimen_remaining
TRUE
poc_flux_month
0.003943815
poc_flux_year
0.003305239
project name
DSMP
province
Kuril-Kamchatka
pseudoreplicate
SO223-4-8
rel_to_oxygen
aerobe
replicate
B
samp mat process
lifeguard preservation solution
samp_collect_device
multiple corer
samp_size
2 ml
sample name
qiita_sid_12249:12249.V1V2.DNA.211.B
sample type
marine sediment
sand
0.0
sediment_sample
211
station
SO223-4
submitted to INSDC
No