human gut metagenome
collection_date
2009-10-29
env_biome
intestine environment
env_feature
hospital
env_material
feces
geo_loc_name
Canada:Montreal
host
Homo sapiens
lat_lon
45.50 N 73.63 W
host_age
80
host_sex
female
host_subject_id
MM001
STATUS
ExposedControl
DAYS_POST_ADM
2
HORN
1
HOSPDURATION
20
PRIOR_CHEMO
0
PRIOR_NSAID
0
PRIOR_PPI
0
PRIOR_CORTICO
0
PRIOR_OPIO
0
PRIOR_LAXA
0
PRIOR_PROP
0
PRIOR_ANTIPROP
0
PRIOR_CEPH
0
PRIOR_FLUORO
0
PRIOR_CARBA
0
PRIOR_PENICI
0
PRIOR_PEBETA
0
PRIOR_VANCOIV
0
PRIOR_VANCOPO
0
PRIOR_AZITHRO
0
PRIOR_METRO
0
PRIOR_COTRIM
0
PRIOR_GENTA
0
PRIOR_CLINDA
0
PRIOR_DAPTO
0
PRIOR_TIGE
0
PRIOR_ANTIFUNG
0
PRIOR_ANTIVIR
0
Acetobacteraceae_family
0
Acidaminococcaceae_family
7.28823
Acidobacteriaceae_family
0
Actinomycetaceae_family
1.35239
Aerococcaceae_family
0
Aeromonadaceae_family
0
Alcaligenaceae_family
0
Aurantimonadaceae_family
0
Bacillales_uncl_family
0.18142
Bacteroidaceae_family
2.04366
Beijerinckiaceae_family
0
Bifidobacteriaceae_family
10.92787
Brachyspiraceae_family
0
Bradyrhizobiaceae_family
0
Brevibacteriaceae_family
0
Brucellaceae_family
0
Burkholderiaceae_family
0
Campylobacteraceae_family
0
Carnobacteriaceae_family
0
Chlamydiaceae_family
0
Clostridiaceae_family
0.31153
Clostridiales_Family_XI_Incertae_Sedis_family
7.66287
Clostridiales_uncl_family
0.06635
Comamonadaceae_family
0
Coriobacteriaceae_family
3.20107
Corynebacteriaceae_family
2.76856
Deinococcaceae_family
0
Desulfobulbaceae_family
0.09864
Desulfovibrionaceae_family
5.39831
Ectothiorhodospiraceae_family
0
Enterobacteriaceae_family
0.436
Enterococcaceae_family
0
Epsilonproteobacteria_uncl_family
0
Erysipelotrichaceae_family
0.00219
Eubacteriaceae_family
0.54049
Flavobacteriaceae_family
0
Frankiaceae_family
0
Fusobacteriaceae_family
0
Halobacteriales_unclassified_family
0
Lachnospiraceae_family
1.53822
Lactobacillaceae_family
5.13265
Leptotrichales_unclassified_family
0
Leuconostocaceae_family
0
Methanobacteriaceae_family
0.03714
Methylobacteriaceae_family
0
Methylocystaceae_family
0
Micrococcaceae_family
0
Moraxellaceae_family
0
Mycobacteriaceae_family
0.39313
Mycoplasmataceae_family
0
Neisseriaceae_family
0
Oceanospirillaceae_family
0
Oscillatoriaceae_family
0
Oxalobacteraceae_family
0
Pasteurellaceae_family
0
Peptostreptococcaceae_family
0
Porphyromonadaceae_family
0.10936
Prevotellaceae_family
30.94895
Propionibacteriaceae_family
0.57579
Pseudomonadaceae_family
0
Rikenellaceae_family
2.57847
Rubrobacteraceae_family
0
Ruminococcaceae_family
8.19225
Sebaldellaceae_family
0
Sphingobacteriaceae_family
0
Staphylococcaceae_family
0
Streptococcaceae_family
0.66031
Sutterellaceae_family
0
Synergistaceae_family
0
Veillonellaceae_family
0.05072
Verrucomicrobiaceae_family
7.50344
Victivallaceae_family
0
Xanthomonadaceae_family
0
unclassified_family
0
Abiotrophia_genus
0
Acetobacteraceae_unclassified_genus
0
Achromobacter_genus
0
Acidaminococcaceae_unclassified_genus
0
Acidaminococcus_genus
0
Acidovorax_genus
0
Acinetobacter_genus
0
Actinomyces_genus
0
Aeromonas_genus
0
Afipia_genus
0
Aggregatibacter_genus
0
Akkermansia_genus
7.50344
Alicycliphilus_genus
0
Alistipes_genus
2.57847
Alkaliphilus_genus
0
Anaerococcus_genus
1.97146
Anaerofustis_genus
0
Anaerostipes_genus
0
Anaerotruncus_genus
0
Arcobacter_genus
0
Atopobium_genus
0
Aurantimonadaceae_unclassified_genus
0
Bacteroides_genus
2.04366
Beijerinckiaceae_unclassified_genus
0
Bifidobacterium_genus
3.63066
Bilophila_genus
4.716
Blautia_genus
0.06635
Bordetella_genus
0
Brachyspira_genus
0
Bradyrhizobium_genus
0
Brevibacterium_genus
0
Brucella_genus
0
Bulleidia_genus
0
Burkholderia_genus
0
Butyrivibrio_genus
0
Campylobacter_genus
0
Catenibacterium_genus
0
Cellulophaga_genus
0
Chlamydiaceae_unclassified_genus
0
Chryseobacterium_genus
0
Citrobacter_genus
0
Clostridiales_Family_XI_Incertae_Sedis_unclassified_genus
3.53026
Clostridium_genus
0.22228
Collinsella_genus
1.43847
Comamonas_genus
0
Coprobacillus_genus
0
Coprococcus_genus
0.91564
Corynebacterium_genus
2.76856
Cupriavidus_genus
0
Deinococcus_genus
0
Delftia_genus
0
Desulfobulbaceae_unclassified_genus
0.09864
Desulfovibrio_genus
0.68231
Dialister_genus
0.05072
Dorea_genus
0.62258
Eggerthella_genus
0.53619
Enhydrobacter_genus
0
Enterobacter_genus
0
Enterococcus_genus
0
Epsilonproteobacteria_uncl_unclassified_genus
0
Eremococcus_genus
0
Escherichia_genus
0.436
Ethanoligenens_genus
0
Eubacterium_genus
0.54049
Faecalibacterium_genus
7.94956
Finegoldia_genus
0.68244
Flavobacterium_genus
0
Frankia_genus
0
Fusobacterium_genus
0
Gardnerella_genus
7.29721
Gemella_genus
0.18142
Gordonibacter_genus
0.09131
Granulicatella_genus
0
Granulicella_genus
0
Haemophilus_genus
0
Holdemania_genus
0.00219
Jonquetella_genus
0
Kingella_genus
0
Klebsiella_genus
0
Lactobacillus_genus
5.13265
Lactococcus_genus
0
Laribacter_genus
0
Lautropia_genus
0
Leuconostoc_genus
0
Marinomonas_genus
0
Marvinbryantia_genus
0
Megamonas_genus
0
Megasphaera_genus
0
Methanobrevibacter_genus
0.03714
Methanosphaera_genus
0
Methylobacterium_genus
0
Methylocystaceae_unclassified_genus
0
Mitsuokella_genus
0
Mobiluncus_genus
1.35239
Mycobacterium_genus
0.39313
Mycoplasma_genus
0
Neisseriaceae_unclassified_genus
0
Ochrobactrum_genus
0
Odoribacter_genus
0
Olsenella_genus
0
Oribacterium_genus
0
Oscillatoriaceae_unclassified_genus
0
Oxalobacter_genus
0
Pantoea_genus
0
Parabacteroides_genus
0.10936
Parascardovia_genus
0
Parvimonas_genus
0
Pectobacterium_genus
0
Pediococcus_genus
0
Peptoniphilus_genus
1.47872
Peptostreptococcus_genus
0
Phascolarctobacterium_genus
7.28823
Porphyromonas_genus
0
Prevotella_genus
30.94895
Propionibacterium_genus
0.57579
Proteus_genus
0
Pseudoflavonifractor_genus
0.08925
Pseudomonas_genus
0
Pseudoramibacter_genus
0
Pyramidobacter_genus
0
Ralstonia_genus
0
Rhodopseudomonas_genus
0
Roseburia_genus
0
Rothia_genus
0
Rubrobacter_genus
0
Ruminococcus_genus
0.1921
Salmonella_genus
0
Sebaldella_genus
0
Selenomonas_genus
0
Shigella_genus
0
Shuttleworthia_genus
0
Slackia_genus
1.1351
Solobacterium_genus
0
Sphingobacteriaceae_unclassified_genus
0
Staphylococcus_genus
0
Stenotrophomonas_genus
0
Streptococcus_genus
0.66031
Subdoligranulum_genus
0.05059
Sutterella_genus
0
Thioalkalivibrio_genus
0
Turicibacter_genus
0
Ureaplasma_genus
0
Veillonella_genus
0
Victivallis_genus
0
Xanthomonas_genus
0
Yersinia_genus
0
unclassified_genus
0
X
129
Abiotrophia_defectiva_species
0
Achromobacter_xylosoxidans_species
0
Acidaminococcus_fermentans_species
0
Acidaminococcus_intestini_species
0
Acidaminococcus_sp_D21_species
0
Acidaminococcus_unclassified_species
0
Acidovorax_ebreus_species
0
Acinetobacter_bereziniae_species
0
Acinetobacter_bouvetii_species
0
Acinetobacter_brisouii_species
0
Acinetobacter_guillouiae_species
0
Acinetobacter_indicus_species
0
Acinetobacter_johnsonii_species
0
Acinetobacter_pittii_calcoaceticus_nosocomialis_species
0
Acinetobacter_unclassified_species
0
Actinobaculum_massiliense_species
0
Actinobaculum_schaalii_species
0
Actinobaculum_sp_oral_taxon_183_species
0
Actinobaculum_unclassified_species
0
Actinobaculum_urinale_species
0
Actinomyces_europaeus_species
0
Actinomyces_graevenitzii_species
0
Actinomyces_johnsonii_species
0
Actinomyces_naeslundii_species
0
Actinomyces_neuii_species
0
Actinomyces_odontolyticus_species
0
Actinomyces_turicensis_species
0
Actinomyces_viscosus_species
0
Adlercreutzia_equolifaciens_species
0.06783
Aerococcus_urinae_species
0
Aeromonas_hydrophila_species
0
Aeromonas_unclassified_species
0
Afipia_broomeae_species
0
Afipia_unclassified_species
0
Akkermansia_muciniphila_species
8.29244
Alcaligenes_unclassified_species
0
Alicycliphilus_unclassified_species
0
Alistipes_finegoldii_species
0
Alistipes_indistinctus_species
0
Alistipes_onderdonkii_species
1.84365
Alistipes_putredinis_species
0.99012
Alistipes_senegalensis_species
0
Alistipes_shahii_species
0
Alistipes_sp_AP11_species
0
Alistipes_sp_HGB5_species
0
Alistipes_unclassified_species
0
Alloprevotella_tannerae_species
0
Alloprevotella_unclassified_species
0
Alloscardovia_omnicolens_species
0
Alphapapillomavirus_3_species
0
Anaerococcus_hydrogenalis_species
0
Anaerococcus_lactolyticus_species
0
Anaerococcus_obesiensis_species
0.18437
Anaerococcus_prevotii_species
0
Anaerococcus_tetradius_species
0
Anaerococcus_vaginalis_species
0.45841
Anaerofustis_stercorihominis_species
0
Anaeroglobus_geminatus_species
0
Anaerostipes_hadrus_species
0
Anaerostipes_sp_3_2_56FAA_species
0
Anaerostipes_unclassified_species
0
Anaerotruncus_colihominis_species
0
Anaerotruncus_unclassified_species
0
Arcobacter_butzleri_species
0
Arcobacter_unclassified_species
0
Atopobium_minutum_species
0
Atopobium_parvulum_species
0
Atopobium_rimae_species
0
Atopobium_sp_BV3Ac4_species
0
Atopobium_vaginae_species
0
Bacteroidales_bacterium_ph8_species
0
Bacteroides_caccae_species
0.1473
Bacteroides_cellulosilyticus_species
0
Bacteroides_clarus_species
0
Bacteroides_coprocola_species
0
Bacteroides_dorei_species
0
Bacteroides_eggerthii_species
0
Bacteroides_faecis_species
0
Bacteroides_finegoldii_species
0
Bacteroides_fluxus_species
0
Bacteroides_fragilis_species
0.00542
Bacteroides_intestinalis_species
0
Bacteroides_massiliensis_species
0
Bacteroides_nordii_species
0
Bacteroides_oleiciplenus_species
0
Bacteroides_ovatus_species
0
Bacteroides_pectinophilus_species
0
Bacteroides_plebeius_species
0
Bacteroides_salyersiae_species
0
Bacteroides_sp_1_1_30_species
0
Bacteroides_sp_1_1_6_species
0
Bacteroides_sp_3_1_19_species
0
Bacteroides_sp_3_2_5_species
0
Bacteroides_stercoris_species
0.01052
Bacteroides_thetaiotaomicron_species
0
Bacteroides_uniformis_species
0.89561
Bacteroides_vulgatus_species
0.67596
Bacteroides_xylanisolvens_species
0
Barnesiella_intestinihominis_species
0
Betapapillomavirus_1_species
0
Betapapillomavirus_2_species
0
Betapapillomavirus_3_species
0
Betapapillomavirus_4_species
0
Betapapillomavirus_5_species
0
Bifidobacterium_adolescentis_species
3.20808
Bifidobacterium_angulatum_species
0
Bifidobacterium_animalis_species
0
Bifidobacterium_bifidum_species
0
Bifidobacterium_breve_species
0
Bifidobacterium_catenulatum_species
0
Bifidobacterium_dentium_species
0.42512
Bifidobacterium_longum_species
0
Bifidobacterium_minimum_species
0
Bifidobacterium_pseudocatenulatum_species
0
Bifidobacterium_pseudolongum_species
0
Bilophila_unclassified_species
4.83829
Bilophila_wadsworthia_species
0.14744
Blautia_hansenii_species
0
Blautia_hydrogenotrophica_species
0
Blautia_producta_species
0
Bombyx_mori_nucleopolyhedrovirus_species
0
Bradyrhizobium_sp_DFCI_1_species
0
Brevibacterium_massiliense_species
0
Brevibacterium_mcbrellneri_species
0
Brevibacterium_unclassified_species
0
Brucella_pinnipedialis_species
0
Bulleidia_extructa_species
0
Burkholderia_unclassified_species
0
Burkholderiales_bacterium_1_1_47_species
0
Butyricicoccus_pullicaecorum_species
0
Butyrivibrio_crossotus_species
0
C2likevirus_unclassified_species
0
Campylobacter_concisus_species
0
Campylobacter_curvus_species
0
Campylobacter_gracilis_species
0
Campylobacter_hominis_species
0
Campylobacter_showae_species
0
Campylobacter_ureolyticus_species
0
Candida_albicans_species
0
Candida_glabrata_species
0
Candida_tropicalis_species
0
Catenibacterium_mitsuokai_species
0
Chicken_anemia_virus_species
0
Chryseobacterium_unclassified_species
0
Citrobacter_freundii_species
0
Citrobacter_unclassified_species
0
Clavispora_lusitaniae_species
0
Clostridiaceae_bacterium_JC118_species
0
Clostridiales_bacterium_1_7_47FAA_species
0
Clostridiales_bacterium_BV3C26_species
0
Clostridium_asparagiforme_species
0
Clostridium_bartlettii_species
0
Clostridium_bolteae_species
0
Clostridium_celatum_species
0
Clostridium_citroniae_species
0
Clostridium_clostridioforme_species
0
Clostridium_difficile_species
0
Clostridium_glycolicum_species
0
Clostridium_hathewayi_species
0
Clostridium_hylemonae_species
0
Clostridium_innocuum_species
0
Clostridium_leptum_species
0
Clostridium_methylpentosum_species
0
Clostridium_nexile_species
0
Clostridium_perfringens_species
0
Clostridium_ramosum_species
0
Clostridium_scindens_species
0
Clostridium_sp_KLE_1755_species
0
Clostridium_sp_L2_50_species
0
Clostridium_symbiosum_species
0.17859
Collinsella_aerofaciens_species
1.00867
Collinsella_intestinalis_species
0
Collinsella_tanakaei_species
0
Collinsella_unclassified_species
0
Comamonas_testosteroni_species
0
Comamonas_unclassified_species
0
Coprobacillus_sp_29_1_species
0
Coprobacillus_unclassified_species
0
Coprobacter_fastidiosus_species
0
Coprococcus_catus_species
0
Coprococcus_comes_species
0
Coprococcus_eutactus_species
0.61983
Coprococcus_sp_ART55_1_species
0
Coriobacteriaceae_bacterium_BV3Ac1_species
0
Coriobacteriaceae_bacterium_phI_species
0
Corynebacterium_amycolatum_species
0.32283
Corynebacterium_aurimucosum_species
0
Corynebacterium_durum_species
0
Corynebacterium_genitalium_species
0
Corynebacterium_glucuronolyticum_species
0
Corynebacterium_jeikeium_species
0
Corynebacterium_massiliense_species
0
Corynebacterium_pseudogenitalium_species
0
Corynebacterium_pyruviciproducens_species
0
Corynebacterium_striatum_species
0
Corynebacterium_tuberculostearicum_species
0
Corynebacterium_urealyticum_species
0
Cupriavidus_metallidurans_species
0
Cupriavidus_unclassified_species
0
Dasheen_mosaic_virus_species
0
Deinococcus_unclassified_species
0
Desulfovibrio_desulfuricans_species
0
Desulfovibrio_piger_species
0
Dialister_invisus_species
0
Dialister_micraerophilus_species
0.07732
Dialister_succinatiphilus_species
0
Dorea_formicigenerans_species
0.53512
Dorea_longicatena_species
0
Dorea_unclassified_species
0.26148
Dysgonomonas_gadei_species
0
Dysgonomonas_unclassified_species
0
Eggerthella_lenta_species
0.0061
Eggerthella_sp_1_3_56FAA_species
0
Eggerthella_unclassified_species
0.78207
Eggerthia_catenaformis_species
0
Enhydrobacter_aerosaccus_species
0
Enterobacter_aerogenes_species
0
Enterobacter_cloacae_species
0
Enterobacteria_phage_RB69_species
0
Enterobacteria_phage_lambda_species
0
Enterobacteria_phage_phiX174_sensu_lato_species
0
Enterobacteriaceae_bacterium_9_2_54FAA_species
0
Enterococcus_avium_species
0
Enterococcus_casseliflavus_species
0
Enterococcus_dispar_species
0
Enterococcus_faecalis_species
0
Enterococcus_faecium_species
0
Enterococcus_gallinarum_species
0
Enterococcus_hirae_species
0
Enterococcus_italicus_species
0
Enterococcus_phage_phiFL3A_species
0
Enterococcus_raffinosus_species
0
Enterococcus_saccharolyticus_species
0
Epsilon15likevirus_unclassified_species
0
Eremothecium_unclassified_species
0
Erysipelotrichaceae_bacterium_21_3_species
0.12995
Erysipelotrichaceae_bacterium_2_2_44A_species
1.19371
Erysipelotrichaceae_bacterium_3_1_53_species
0
Erysipelotrichaceae_bacterium_5_2_54FAA_species
0
Erysipelotrichaceae_bacterium_6_1_45_species
1.05929
Escherichia_coli_species
0.44424
Escherichia_unclassified_species
0.88778
Eubacterium_biforme_species
0
Eubacterium_brachy_species
0
Eubacterium_cylindroides_species
0
Eubacterium_dolichum_species
0
Eubacterium_eligens_species
0
Eubacterium_hallii_species
0
Eubacterium_infirmum_species
0
Eubacterium_limosum_species
0
Eubacterium_ramulus_species
0
Eubacterium_rectale_species
0
Eubacterium_siraeum_species
0.26374
Eubacterium_sp_3_1_31_species
0
Eubacterium_ventriosum_species
0
Facklamia_hominis_species
0
Facklamia_ignava_species
0
Facklamia_languida_species
0
Facklamia_unclassified_species
0
Faecalibacterium_prausnitzii_species
4.94754
Finegoldia_magna_species
0.64224
Flavonifractor_plautii_species
0.0884
Fusobacterium_gonidiaformans_species
0
Fusobacterium_mortiferum_species
0
Fusobacterium_necrophorum_species
0
Fusobacterium_nucleatum_species
0
Fusobacterium_periodonticum_species
0
Fusobacterium_ulcerans_species
0
Fusobacterium_varium_species
0
Gardnerella_vaginalis_species
8.50037
Gemella_haemolysans_species
0
Gemella_morbillorum_species
0.06841
Gemella_sanguinis_species
0
Gemella_unclassified_species
0
Gordonibacter_pamelaeae_species
0
Granulicatella_adiacens_species
0
Granulicatella_elegans_species
0
Granulicatella_unclassified_species
0
Haemophilus_haemolyticus_species
0
Haemophilus_parainfluenzae_species
0
Hafnia_alvei_species
0
Helcococcus_kunzii_species
0
Holdemania_filiformis_species
0
Holdemania_sp_AP2_species
0
Holdemania_unclassified_species
0
Human_herpesvirus_1_species
0
Human_herpesvirus_4_species
0.01693
Human_papillomavirus_species
0
Human_papillomavirus_132_like_viruses_species
0
Human_papillomavirus_type_135_species
0
JC_polyomavirus_species
0
Jonquetella_anthropi_species
0
Jonquetella_sp_BV3C21_species
0
Jonquetella_unclassified_species
0
Klebsiella_oxytoca_species
0
Klebsiella_pneumoniae_species
0
Klebsiella_unclassified_species
0
Lachnospiraceae_bacterium_1_1_57FAA_species
0
Lachnospiraceae_bacterium_1_4_56FAA_species
0
Lachnospiraceae_bacterium_2_1_46FAA_species
0
Lachnospiraceae_bacterium_2_1_58FAA_species
0
Lachnospiraceae_bacterium_3_1_46FAA_species
0
Lachnospiraceae_bacterium_3_1_57FAA_CT1_species
0
Lachnospiraceae_bacterium_5_1_57FAA_species
0
Lachnospiraceae_bacterium_5_1_63FAA_species
0
Lachnospiraceae_bacterium_6_1_63FAA_species
0
Lachnospiraceae_bacterium_7_1_58FAA_species
0
Lachnospiraceae_bacterium_8_1_57FAA_species
0
Lachnospiraceae_bacterium_9_1_43BFAA_species
0
Lactobacillus_amylovorus_species
0
Lactobacillus_animalis_species
0
Lactobacillus_antri_species
0
Lactobacillus_brevis_species
0
Lactobacillus_casei_paracasei_species
0
Lactobacillus_crispatus_species
0
Lactobacillus_curvatus_species
0
Lactobacillus_delbrueckii_species
0
Lactobacillus_fermentum_species
0
Lactobacillus_gasseri_species
0
Lactobacillus_helveticus_species
0
Lactobacillus_iners_species
4.88056
Lactobacillus_jensenii_species
0
Lactobacillus_johnsonii_species
0
Lactobacillus_oris_species
0
Lactobacillus_pentosus_species
0
Lactobacillus_phage_Lc_Nu_species
0
Lactobacillus_phage_PL_1_species
0
Lactobacillus_plantarum_species
0
Lactobacillus_reuteri_species
0
Lactobacillus_rhamnosus_species
0
Lactobacillus_ruminis_species
0
Lactobacillus_sakei_species
0
Lactobacillus_salivarius_species
0
Lactobacillus_sanfranciscensis_species
0
Lactobacillus_ultunensis_species
0
Lactobacillus_vaginalis_species
0
Lactococcus_lactis_species
0
Lactococcus_phage_jm2_species
0
Lactococcus_raffinolactis_species
0
Lautropia_mirabilis_species
0
Leifsonia_unclassified_species
0
Leuconostoc_citreum_species
0
Leuconostoc_fallax_species
0
Leuconostoc_lactis_species
0
Leuconostoc_mesenteroides_species
0
Leuconostoc_unclassified_species
0
Limnohabitans_unclassified_species
0
Lymphocryptovirus_unclassified_species
0
Malassezia_globosa_species
0
Marvinbryantia_formatexigens_species
0
Megamonas_funiformis_species
0
Megamonas_hypermegale_species
0
Megamonas_rupellensis_species
0
Megamonas_unclassified_species
0
Megasphaera_elsdenii_species
0
Megasphaera_genomosp_type_1_species
0
Megasphaera_micronuciformis_species
0
Megasphaera_sp_BV3C16_1_species
0
Megasphaera_unclassified_species
0
Merkel_cell_polyomavirus_species
0
Methanobrevibacter_smithii_species
0.06779
Methanobrevibacter_unclassified_species
0
Methanosphaera_stadtmanae_species
0
Methylobacterium_extorquens_species
0
Mitsuokella_multacida_species
0
Mitsuokella_unclassified_species
0
Mobiluncus_curtisii_species
0.34817
Mobiluncus_unclassified_species
0.60434
Morganella_morganii_species
0
Mycoplasma_hominis_species
0
Naumovozyma_unclassified_species
0
Ochrobactrum_anthropi_species
0
Odoribacter_laneus_species
0
Odoribacter_splanchnicus_species
0
Odoribacter_unclassified_species
0
Olsenella_uli_species
0
Olsenella_unclassified_species
0
Oribacterium_sinus_species
0
Oribacterium_sp_oral_taxon_078_species
0
Orthohepadnavirus_unclassified_species
0
Oscillibacter_sp_KLE_1745_species
0
Oscillibacter_unclassified_species
0.18527
Oxalobacter_formigenes_species
0
Paenibacillus_dendritiformis_species
0
Pantoea_unclassified_species
0
Parabacteroides_distasonis_species
0.01084
Parabacteroides_goldsteinii_species
0
Parabacteroides_johnsonii_species
0
Parabacteroides_merdae_species
0.00837
Parabacteroides_unclassified_species
0.11459
Paraprevotella_clara_species
0
Paraprevotella_unclassified_species
0.12735
Paraprevotella_xylaniphila_species
0
Parasutterella_excrementihominis_species
0
Parvimonas_micra_species
0
Parvimonas_unclassified_species
0
Parvovirus_NIH_CQV_species
0
Pectobacterium_wasabiae_species
0
Pediococcus_acidilactici_species
0
Pediococcus_lolii_species
0
Pediococcus_pentosaceus_species
0
Peptoniphilus_duerdenii_species
0
Peptoniphilus_harei_species
0.02608
Peptoniphilus_lacrimalis_species
0
Peptoniphilus_rhinitidis_species
0.87113
Peptoniphilus_sp_BV3AC2_species
0
Peptoniphilus_sp_JC140_species
0
Peptoniphilus_sp_oral_taxon_375_species
0
Peptoniphilus_timonensis_species
0
Peptostreptococcaceae_noname_unclassified_species
0
Peptostreptococcus_anaerobius_species
0
Peptostreptococcus_stomatis_species
0
Peptostreptococcus_unclassified_species
0
Phascolarctobacterium_succinatutens_species
6.92639
PhiCD119likevirus_unclassified_species
0
Polyomavirus_HPyV6_species
0
Polyomavirus_HPyV7_species
0
Porcine_type_C_oncovirus_species
0
Porphyromonas_asaccharolytica_species
0
Porphyromonas_bennonis_species
0.30388
Porphyromonas_somerae_species
0
Porphyromonas_uenonis_species
0
Prevotella_amnii_species
0
Prevotella_bergensis_species
0
Prevotella_bivia_species
29.07545
Prevotella_buccae_species
0
Prevotella_buccalis_species
0
Prevotella_copri_species
0
Prevotella_disiens_species
0
Prevotella_histicola_species
0
Prevotella_loescheii_species
0
Prevotella_melaninogenica_species
0
Prevotella_oris_species
0
Prevotella_paludivivens_species
0
Prevotella_stercorea_species
0
Prevotella_timonensis_species
0
Propionibacterium_acnes_species
0
Propionibacterium_avidum_species
8.74131
Propionibacterium_freudenreichii_species
0
Propionibacterium_granulosum_species
0.9042
Propionibacterium_phage_P104A_species
0
Propionibacterium_phage_PAD20_species
0
Propionimicrobium_lymphophilum_species
0
Proteus_mirabilis_species
0
Proteus_penneri_species
0
Proteus_unclassified_species
0
Pseudoflavonifractor_capillosus_species
0
Pseudomonas_aeruginosa_species
0
Pseudomonas_fragi_species
0
Pseudomonas_phage_D3112_species
0
Pseudomonas_phage_F116_species
0
Pseudomonas_unclassified_species
0
Pseudoramibacter_alactolyticus_species
0
Pyramidobacter_piscolens_species
0
Ralstonia_unclassified_species
0
Rhodopseudomonas_palustris_species
0
Roseburia_hominis_species
0
Roseburia_intestinalis_species
0
Roseburia_inulinivorans_species
0
Roseburia_unclassified_species
0.00856
Rothia_dentocariosa_species
0
Rothia_mucilaginosa_species
0
Rothia_unclassified_species
0
Ruminococcaceae_bacterium_D16_species
0
Ruminococcus_bromii_species
0
Ruminococcus_callidus_species
0
Ruminococcus_champanellensis_species
0
Ruminococcus_gnavus_species
0
Ruminococcus_lactaris_species
0
Ruminococcus_obeum_species
0.08727
Ruminococcus_sp_5_1_39BFAA_species
0
Ruminococcus_torques_species
0
Saccharomyces_cerevisiae_species
0
Salmonella_phage_HK620_species
0
Scardovia_unclassified_species
0
Scardovia_wiggsiae_species
0
Sebaldella_termitidis_species
0
Selenomonas_noxia_species
0
Serratia_marcescens_species
0
Shigella_phage_Sf6_species
0
Shigella_sonnei_species
0
Slackia_exigua_species
0
Slackia_piriformis_species
0
Slackia_unclassified_species
0
Solobacterium_moorei_species
0
Sphingobacterium_unclassified_species
0
Staphylococcus_aureus_species
0
Staphylococcus_caprae_capitis_species
0
Staphylococcus_epidermidis_species
0
Staphylococcus_haemolyticus_species
0
Staphylococcus_hominis_species
0
Staphylococcus_lugdunensis_species
0
Staphylococcus_phage_PVL_species
0
Staphylococcus_phage_ROSA_species
0
Staphylococcus_simulans_species
0
Stenotrophomonas_maltophilia_species
0
Stenotrophomonas_unclassified_species
0
Stomatobaculum_longum_species
0
Streptococcus_agalactiae_species
0.31223
Streptococcus_anginosus_species
0.40896
Streptococcus_australis_species
0
Streptococcus_constellatus_species
0
Streptococcus_cristatus_species
0
Streptococcus_dysgalactiae_species
0
Streptococcus_gallolyticus_species
0
Streptococcus_gordonii_species
0
Streptococcus_infantarius_species
0
Streptococcus_infantis_species
0
Streptococcus_intermedius_species
0
Streptococcus_lutetiensis_species
0
Streptococcus_macedonicus_species
0
Streptococcus_mitis_oralis_pneumoniae_species
0
Streptococcus_mutans_species
0
Streptococcus_orisratti_species
0
Streptococcus_parasanguinis_species
0
Streptococcus_parauberis_species
0
Streptococcus_pasteurianus_species
0
Streptococcus_pyogenes_species
0
Streptococcus_salivarius_species
0
Streptococcus_sanguinis_species
0
Streptococcus_thermophilus_species
0
Streptococcus_tigurinus_species
0
Streptococcus_vestibularis_species
0
Subdoligranulum_sp_4_3_54A2FAA_species
0
Subdoligranulum_unclassified_species
1.76211
Sutterella_wadsworthensis_species
0
T5likevirus_unclassified_species
0
Thermus_scotoductus_species
0
Thiomonas_unclassified_species
0
Tobacco_vein_clearing_virus_species
0
Torque_teno_virus_species
0
Torque_teno_virus_3_species
0
Turicibacter_sanguinis_species
0
Turicibacter_unclassified_species
0
Ureaplasma_parvum_species
0
Ureaplasma_unclassified_species
0
Varibaculum_cambriense_species
0
Veillonella_atypica_species
0
Veillonella_dispar_species
0
Veillonella_parvula_species
0
Veillonella_ratti_species
0
Veillonella_unclassified_species
0
Viunalikevirus_unclassified_species
0
Weissella_confusa_species
0
Weissella_unclassified_species
0
Yersinia_phage_L_413C_species
0
candidate_division_TM7_single_cell_isolate_TM7c_species
0
unclassified_species
0
CEPH
1To3Days
FLUORO
NoTreatment
CARBA
NoTreatment
PENICI
NoTreatment
PEBETA
NoTreatment
VANCOIV
NoTreatment
VANCOPO
NoTreatment
AZITHRO
NoTreatment
METRO
NoTreatment
COTRIM
NoTreatment
GENTA
NoTreatment
CLINDA
NoTreatment
DAPTO
NoTreatment
CEPH.1To3Days_RF
1
CEPH.4To14Days_RF
0
CEPH.15To30Days_RF
0
FLUORO.1To3Days_RF
0
FLUORO.4To14Days_RF
0
FLUORO.15To30Days_RF
0
CARBA.1To3Days_RF
0
CARBA.4To14Days_RF
0
CARBA.15To30Days_RF
0
PENICI.1To3Days_RF
0
PENICI.4To14Days_RF
0
PENICI.15To30Days_RF
0
PEBETA.1To3Days_RF
0
PEBETA.4To14Days_RF
0
PEBETA.15To30Days_RF
0
VANCOIV.1To3Days_RF
0
VANCOIV.4To14Days_RF
0
VANCOIV.15To30Days_RF
0
VANCOPO.1To3Days_RF
0
VANCOPO.4To14Days_RF
0
VANCOPO.15To30Days_RF
0
AZITHRO.1To3Days_RF
0
AZITHRO.4To14Days_RF
0
AZITHRO.15To30Days_RF
0
METRO.1To3Days_RF
0
METRO.4To14Days_RF
0
METRO.15To30Days_RF
0
COTRIM.1To3Days_RF
0
COTRIM.4To14Days_RF
0
COTRIM.15To30Days_RF
0
GENTA.1To3Days_RF
0
GENTA.4To14Days_RF
0
GENTA.15To30Days_RF
0
CLINDA.1To3Days_RF
0
CLINDA.4To14Days_RF
0
CLINDA.15To30Days_RF
0
DAPTO.1To3Days_RF
0
DAPTO.4To14Days_RF
0
DAPTO.15To30Days_RF
0
CEPH_bRF
1
FLUORO_bRF
0
CARBA_bRF
0
PENICI_bRF
0
PEBETA_bRF
0
VANCOIV_bRF
0
VANCOPO_bRF
0
AZITHRO_bRF
0
METRO_bRF
0
COTRIM_bRF
0
GENTA_bRF
0
CLINDA_bRF
0
DAPTO_bRF
0
anyAntiMicrobials
1To3Days
anyAntiMicrobials.1To3Days_RF
1
anyAntiMicrobials.4To14Days_RF
0
anyAntiMicrobials.15To30Days_RF
0
DAYS_POST_ADM_RF
2
CHEMO
NoTreatment
NSAID
NoTreatment
LAXA
NoTreatment
PPI
NoTreatment
CORTICO
NoTreatment
OPIO
NoTreatment
CHEMO.1To3Days_RF
0
CHEMO.4To14Days_RF
0
CHEMO.15To30Days_RF
0
NSAID.1To3Days_RF
0
NSAID.4To14Days_RF
0
NSAID.15To30Days_RF
0
LAXA.1To3Days_RF
0
LAXA.4To14Days_RF
0
LAXA.15To30Days_RF
0
PPI.1To3Days_RF
0
PPI.4To14Days_RF
0
PPI.15To30Days_RF
0
CORTICO.1To3Days_RF
0
CORTICO.4To14Days_RF
0
CORTICO.15To30Days_RF
0
OPIO.1To3Days_RF
0
OPIO.4To14Days_RF
0
OPIO.15To30Days_RF
0
CHEMO_bRF
0
NSAID_bRF
0
LAXA_bRF
0
PPI_bRF
0
CORTICO_bRF
0
OPIO_bRF
0
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.human-gut