human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506936
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:43Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.4784ZBIO
aborh
A+
age
72
age units
years
agvhd_gut
negative
agvhd_organ
None documented
agvhd_severity
no
anc_engrafment
yes
blood_type_donor1
O+
blood_type_donor2
Missing: Not applicable
bmi
29
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
cgvhd_severity
Stage 2
chemotherapy_regimen
Flu/TBI
cmv status
negative
collection_timestamp
Missing: Restricted access
conditioning_intensity
Low intensity
cyclosporine
no
cytogenetics
abnormal
days_at_relapse
Missing: Not applicable
days_to_anc_engrafment
9
days_to_platelet_engrafment
37
deceased
0
disease
MDS
disease_status_at_transplant
refractory
dna_extracted
TRUE
donor id
Missing: Not applicable
donor source
pbsc
donor type
unrelated
donor1_cmv_status
negative
donor1_match
9/10
donor1_sex
male
donor2_cmv_status
Missing: Not applicable
donor2_match
Missing: not applicable
donor2_sex
Missing: Not applicable
donor_or_patient
Patient
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Missing: Not applicable
geo loc name
USA:CO
gi_history_details
bladder repair with bowel section
haplotype
A1/25, B8/18, C7/7, DR3/4, DQ3/4
host common name
human
host scientific name
Homo sapiens
host subject id
4784ZBIO
host taxid
9606
infection_details
Missing: Not applicable
infection_duringafter_transplant
C difficile, sepsis, Strep pneumonia, VRE UTI
infection_prior_to_transplant
no
latitude
39.76
longitude
-104.88
methotrexate
no
mmf
yes
other_viruses
EBV, VZV
pb_cd3_1_year
Missing: Not collected
pb_cd3_day_100
95
pb_cd3_day_180
Missing: Not collected
pb_cd3_day_30
84
pb_unfx_1_year
Missing: Not applicable
pb_unfx_day_100
95
pb_unfx_day_180
Missing: Not applicable
pb_unfx_day_30
95
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
yes
race
white
relapsed
no
right_censor_time
100
sample name
qiita_sid_10564:10564.4784ZBIO
sample type
stool
sex
male
sirolimus
no
tacrolimus
yes
time_to_agvhd
Missing: Not applicable
time_to_cgvhd
Missing: Not applicable
time_to_death
Missing: Not applicable