human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506996
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:45Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.TPC4DXSR
aborh
O+
age
Missing: Not collected
age units
years
agvhd_gut
Missing: Not applicable
agvhd_organ
Missing: Not applicable
agvhd_severity
Missing: Not applicable
anc_engrafment
Missing: Not applicable
blood_type_donor1
Missing: Not applicable
blood_type_donor2
Missing: Not applicable
bmi
Missing: Not collected
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
cgvhd_severity
Missing: Not applicable
chemotherapy_regimen
Missing: Not applicable
cmv status
negative
collection_timestamp
Missing: Restricted access
conditioning_intensity
Missing: Not applicable
cyclosporine
Missing: Not applicable
cytogenetics
Missing: Not applicable
days_at_relapse
Missing: Not applicable
days_to_anc_engrafment
Missing: Not applicable
days_to_platelet_engrafment
Missing: Not applicable
deceased
Missing: Not applicable
disease
Missing: Not applicable
disease_status_at_transplant
Missing: Not applicable
dna_extracted
TRUE
donor id
Missing: Not applicable
donor source
Missing: Not applicable
donor type
Missing: Not applicable
donor1_cmv_status
Missing: Not applicable
donor1_match
Missing: not applicable
donor1_sex
Missing: Not applicable
donor2_cmv_status
Missing: Not applicable
donor2_match
Missing: not applicable
donor2_sex
Missing: Not applicable
donor_or_patient
Donor
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Missing: Not applicable
geo loc name
USA:CO
gi_history_details
Missing: Not collected
haplotype
A1/68, B8/27, C2/7, DR3/11, DQ2/3
host common name
human
host scientific name
Homo sapiens
host subject id
TPC4DXSR
host taxid
9606
infection_details
Missing: Not collected
infection_duringafter_transplant
Missing: Not applicable
infection_prior_to_transplant
Missing: Not collected
latitude
39.76
longitude
-104.88
methotrexate
Missing: Not applicable
mmf
Missing: Not applicable
other_viruses
Missing: not collected
pb_cd3_1_year
Missing: Not applicable
pb_cd3_day_100
Missing: Not applicable
pb_cd3_day_180
Missing: Not applicable
pb_cd3_day_30
Missing: Not applicable
pb_unfx_1_year
Missing: Not applicable
pb_unfx_day_100
Missing: Not applicable
pb_unfx_day_180
Missing: Not applicable
pb_unfx_day_30
Missing: Not applicable
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
Missing: Not applicable
race
Missing: Not collected
relapsed
Missing: Not applicable
right_censor_time
Missing: Not applicable
sample name
qiita_sid_10564:10564.TPC4DXSR
sample type
stool
sex
female
sirolimus
Missing: Not applicable
tacrolimus
Missing: Not applicable
time_to_agvhd
Missing: Not applicable
time_to_cgvhd
Missing: Not applicable
time_to_death
Missing: Not applicable