coral metagenome
collection_date
2012
depth
13.1 m
env_biome
marine
env_feature
not applicable
env_material
Coral tissue
geo_loc_name
USA: Gulf of Alaska
host
Primnoa pacifica
lat_lon
57.888983 N 133.31645 W
lib_size
44630
mid
CATAGTAGTG
nucl_acid_amp
doi:10.1093/nar/gkq887
nucl_acid_ext
doi:10.1371/journal.pone.0009568
pcr_primers
FWD: 5_ AYTGGGYDTAAAGNG, REV:5_ CCGTCAATTYYTTTRAGTTT
project_name
16S amplicons from cold water coral microbiomes ofÊPrimnoa pacifica
salinity
30.1 psu
samp_collect_device
SCUBA divers
samp_mat_process
Preserved using RNAlater overnight at 4 ûC before extended storage in -20 ûC
samp_size
~ 50 mg
samp_store_temp
neg 20 C
seq_meth
GS FLX 454 pyrosequencing
source_material_id
Coral tissue
target_gene
16S rRNA
target_subfragment
V4-V5
temp
5.0 C
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated