plant metagenome
ENA first public
2016-08-21
ENA last update
2016-08-17
External Id
SAMEA4385239
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-21T17:01:18Z
INSDC last update
2016-08-17T21:54:28Z
INSDC status
public
Submitter Id
qiita_sid_10248:10248.DACA.1.1
age
11
age units
days
altitude
0
ammonium_units
ug/mL
anonymized name
DACA_1.1
assigned_from_geo
TRUE
bacterial_diversity
6
barcode
TCCCTTGTCTCC
bodo_sp
0
bodo_sp_units
per mL
center_name
Berkeley
center_project_name
Armitage pitcher plants
chilomonas
0
chilomonas_units
per mL
chlamydomonas
0
chlamydomonas_units
per mL
collection_timestamp
06/13/2013
colpoda
0
colpoda_units
per mL
common name
plant metagenome
country
GAZ:United States of America
dna_extracted
TRUE
dry_mass_pitcher
3.221
elevation
1174.582764
env biome
fresh water
env feature
pool
env matter
eutrophic water
env package
plant-associated
env_material
eutrophic water
experiment_design_description
timeseries study of pitcher plants
extracted DNA avail now
TRUE
geo loc name
USA:CA,Quincy
has_physical_specimen
TRUE
host common name
pitcher plant
host scientific name
Darlingtonia californica
host subject id
DACA_1.1
host taxid
4355
instrument model
Illumina HiSeq 2000
labeled_15n_residence
11
labeled_15n_residence_units
days
latitude
39.985619
library construction protocol
Illumina HiSeq 515f, 806r amplification of 16SrRNA V4
linker
GT
log_lower
19.15954068
log_mean_bact
19.25525036
log_upper
19.35084433
longitude
-120.987003
lower_95_ci_perct_bact
209354737
mean_bact
230382231.2
mean_bact_units
ind per mil
midge_total
9
mite_total
0
monas
0
monas_units
per mL
nitrate_units
ug/mL
pcr primers
FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
petalomonas
0
petalomonas_units
per mL
phosphate_units
ug/mL
physical samp avail now
TRUE
physical_specimen_location
UC Berkeley
physical_specimen_remaining
FALSE
platform
Illumina
polytoma
0
polytoma_units
per mL
polytomella
0
polytomella_units
per mL
primer
GTGTGCCAGCMGCCGCGGTAA
public
TRUE
required_sample_info_status
completed
respiration_units
ug CO2-C/mg/day
rhynchobodo
0
rhynchobodo_units
per mL
rotifer
0
rotifer_units
per mL
run center
ANL
run date
10/1/14
run prefix
141021_AMP4_NoIndex_L004
sample name
qiita_sid_10248:10248.DACA.1.1
sample number
1
sample site
Blackhawk Creek, Plumas National Forest, Quincy, CA
sample type
eutrophic water
sequencing_meth
Sequencing by synthesis
target gene
16S rRNA
target subfragment
V4
upper_95_ci_perct_bact
253492383.4
well
A1