uncultured Candidatus Neoarthromitus sp.
ENA-FIRST-PUBLIC
2020-08-05T17:06:37Z
ENA-LAST-UPDATE
2020-03-09T08:10:38Z
External Id
SAMEA6614744
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2020-08-05T17:06:37Z
INSDC last update
2020-03-09T08:10:38Z
INSDC status
public
Submitter Id
SFB-human-IMAG
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
megahit
binning parameters
--seed 123 -m 1500
binning software
MetaBAT2
collection date
2002
common name
Human SFB
completeness score
85.6
completeness software
CheckM
contamination score
0
environment (biome)
Human gut
environment (feature)
Small bowel luminal content
environment (material)
Illeostomy bag content
geographic location (country and/or sea)
Sweden
geographic location (latitude)
63.82
geographic location (longitude)
20.26
investigation type
metagenome-assembled genome
isolation source
human ileostomy sample
metagenomic source
human gut metagenome
project name
SFB-human
relationship to oxygen
obligate anaerobe
sample derived from
ERS4065018,ERS4065019,ERS4065020,ERS4065021,ERS4065022
sample name
SFB-human-IMAG
scientific_name
uncultured Candidatus Arthromitus sp.
sequencing method
Illumina
taxonomic identity marker
multi-marker