human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506978
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:44Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.N6YWXQDS
aborh
A+
age
48
age units
years
agvhd_gut
negative
agvhd_organ
None documented
agvhd_severity
no
anc_engrafment
yes
blood_type_donor1
O+
blood_type_donor2
A+
bmi
31
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
cgvhd_severity
Stage 1
chemotherapy_regimen
Flu/Cy/Thio/TBI
cmv status
positive
collection_timestamp
Missing: Restricted access
conditioning_intensity
Intermediate intensity
cyclosporine
yes
cytogenetics
abnormal
days_at_relapse
Missing: Not applicable
days_to_anc_engrafment
32
days_to_platelet_engrafment
29
deceased
0
disease
AML
disease_status_at_transplant
remission
dna_extracted
TRUE
donor id
Missing: Not applicable
donor source
cord+cord
donor type
unrelated
donor1_cmv_status
negative
donor1_match
5/6
donor1_sex
female
donor2_cmv_status
negative
donor2_match
5/6
donor2_sex
female
donor_or_patient
Patient
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Missing: Not applicable
geo loc name
USA:CO
gi_history_details
Perirectal abscess
haplotype
A24/25, B18/52, C12/12, DR15/15, DQ6/6
host common name
human
host scientific name
Homo sapiens
host subject id
N6YWXQDS
host taxid
9606
infection_details
diarrhea, fever
infection_duringafter_transplant
C difficile, rhinovirus
infection_prior_to_transplant
yes
latitude
39.76
longitude
-104.88
methotrexate
no
mmf
yes
other_viruses
VZV
pb_cd3_1_year
100
pb_cd3_day_100
100
pb_cd3_day_180
100
pb_cd3_day_30
100
pb_unfx_1_year
100
pb_unfx_day_100
100
pb_unfx_day_180
100
pb_unfx_day_30
100
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
yes
race
asian
relapsed
no
right_censor_time
100
sample name
qiita_sid_10564:10564.N6YWXQDS
sample type
stool
sex
male
sirolimus
no
tacrolimus
no
time_to_agvhd
Missing: Not applicable
time_to_cgvhd
Missing: Not applicable
time_to_death
Missing: Not applicable