human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506951
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:43Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.BGI6J297
aborh
A+
age
48
age units
years
agvhd_gut
positive
agvhd_organ
gut
agvhd_severity
yes
anc_engrafment
yes
blood_type_donor1
A+
blood_type_donor2
Missing: Not applicable
bmi
34
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
chemotherapy_regimen
Bu/Cy
cmv status
negative
collection_timestamp
Missing: Restricted access
conditioning_intensity
High intensity
cyclosporine
no
cytogenetics
abnormal
days_at_relapse
Missing: Not applicable
days_to_anc_engrafment
14
days_to_platelet_engrafment
11
deceased
1
disease
MDS
disease_status_at_transplant
refractory
dna_extracted
TRUE
donor id
DC6MEYNB
donor source
pbsc
donor type
related
donor1_cmv_status
negative
donor1_match
10/10
donor1_sex
female
donor2_cmv_status
Missing: Not applicable
donor2_match
Missing: not applicable
donor2_sex
Missing: Not applicable
donor_or_patient
Patient
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Sepsis/ARDS/GVHD
geo loc name
USA:CO
haplotype
A29/32, B44/44, C4/16, DR1/7, DQ2/5
host common name
human
host scientific name
Homo sapiens
host subject id
BGI6J297
host taxid
9606
infection_details
Missing: Not applicable
infection_duringafter_transplant
sepsis, VRE bacteremia
infection_prior_to_transplant
no
latitude
39.76
longitude
-104.88
methotrexate
yes
mmf
no
other_viruses
HSV1, VZV
pb_cd3_1_year
Missing: Not applicable
pb_cd3_day_100
95
pb_cd3_day_180
Missing: Not applicable
pb_cd3_day_30
81
pb_unfx_1_year
Missing: Not applicable
pb_unfx_day_100
Missing: Not collected
pb_unfx_day_180
Missing: Not applicable
pb_unfx_day_30
Missing: Not collected
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
yes
race
white
relapsed
no
right_censor_time
116
sample name
qiita_sid_10564:10564.BGI6J297
sample type
stool
sex
female
sirolimus
no
tacrolimus
yes
time_to_agvhd
75
time_to_cgvhd
75
time_to_death
116