human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506955
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:43Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.CCHWVERY
aborh
O+
age
49
age units
years
agvhd_gut
positive
agvhd_organ
gut
agvhd_severity
yes
anc_engrafment
yes
blood_type_donor1
O+
blood_type_donor2
O+
bmi
21
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
chemotherapy_regimen
Flu/Cy/TBI
cmv status
positive
collection_timestamp
Missing: Restricted access
conditioning_intensity
Intermediate intensity
cyclosporine
yes
cytogenetics
normal
days_at_relapse
Missing: Not applicable
days_to_anc_engrafment
27
days_to_platelet_engrafment
38
deceased
1
disease
TCL
disease_status_at_transplant
refractory
dna_extracted
TRUE
donor id
Missing: Not applicable
donor source
cord+cord
donor type
cord
donor1_cmv_status
positive
donor1_match
7/10
donor1_sex
male
donor2_cmv_status
positive
donor2_match
6/10
donor2_sex
female
donor_or_patient
Patient
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Missing: Not collected
geo loc name
USA:CO
gi_history_details
GERD
haplotype
A2/2, B39/45, C5/7, DR7/15, DQ3/6
host common name
human
host scientific name
Homo sapiens
host subject id
CCHWVERY
host taxid
9606
infection_details
C difficile
infection_duringafter_transplant
C difficile, pneunomia, VRE, proteus mirabilis UTI
infection_prior_to_transplant
yes
latitude
39.76
longitude
-104.88
methotrexate
no
mmf
yes
other_viruses
EBV, HSV, VZV
pb_cd3_1_year
Missing: Not collected
pb_cd3_day_100
100
pb_cd3_day_180
100
pb_cd3_day_30
100
pb_unfx_1_year
Missing: Not applicable
pb_unfx_day_100
100
pb_unfx_day_180
100
pb_unfx_day_30
100
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
yes
race
white
relapsed
no
right_censor_time
100
sample name
qiita_sid_10564:10564.CCHWVERY
sample type
stool
sex
female
sirolimus
no
tacrolimus
no
time_to_agvhd
27
time_to_cgvhd
27
time_to_death
Missing: Not collected