plant metagenome
ENA first public
2016-08-21
ENA last update
2016-08-17
External Id
SAMEA4385271
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-21T17:01:18Z
INSDC last update
2016-08-17T21:54:29Z
INSDC status
public
Submitter Id
qiita_sid_10248:10248.DACA.4.2
age
88
age units
days
altitude
0
ammonium_units
ug/mL
anonymized name
DACA_4.2
assigned_from_geo
TRUE
bacterial_diversity
6
barcode
TCTGGGCATTGA
bodo_sp
0
bodo_sp_units
per mL
center_name
Berkeley
center_project_name
Armitage pitcher plants
chilomonas
0
chilomonas_units
per mL
chlamydomonas
0
chlamydomonas_units
per mL
collection_timestamp
09/09/2013
colpoda
0
colpoda_units
per mL
common name
plant metagenome
country
GAZ:United States of America
dna_extracted
TRUE
dry_mass_pitcher
3.632
elevation
1174.582764
env biome
fresh water
env feature
pool
env matter
eutrophic water
env package
plant-associated
env_material
eutrophic water
experiment_design_description
timeseries study of pitcher plants
extracted DNA avail now
TRUE
geo loc name
USA:CA,Quincy
has_physical_specimen
TRUE
host common name
pitcher plant
host scientific name
Darlingtonia californica
host subject id
DACA_4.2
host taxid
4355
instrument model
Illumina HiSeq 2000
labeled_15n_residence
22
labeled_15n_residence_units
days
latitude
39.985619
library construction protocol
Illumina HiSeq 515f, 806r amplification of 16SrRNA V4
linker
GT
log_lower
24.808302
log_mean_bact
24.89989648
log_mean_virus
23.09049836
log_upper
24.99138931
longitude
-120.987003
lower_95_ci_perct_bact
59444087354
lower_95_ci_perct_virus
8934461557
mean_bact
65145983202
mean_bact_units
ind per mil
mean_viruses
10667828379
midge_total
155
mite_total
3
monas
0
monas_units
per mL
nitrate_units
ug/mL
pcr primers
FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
petalomonas
0
petalomonas_units
per mL
phosphate_units
ug/mL
physical samp avail now
TRUE
physical_specimen_location
UC Berkeley
physical_specimen_remaining
FALSE
platform
Illumina
polytoma
0
polytoma_units
per mL
polytomella
195497
polytomella_units
per mL
primer
GTGTGCCAGCMGCCGCGGTAA
public
TRUE
required_sample_info_status
completed
respiration
8.329
respiration_units
ug CO2-C/mg/day
rhynchobodo
0
rhynchobodo_units
per mL
rotifer
0
rotifer_units
per mL
run center
ANL
run date
10/1/14
run prefix
141021_AMP4_NoIndex_L004
sample name
qiita_sid_10248:10248.DACA.4.2
sample number
36
sample site
Blackhawk Creek, Plumas National Forest, Quincy, CA
sample type
eutrophic water
sequencing_meth
Sequencing by synthesis
target gene
16S rRNA
target subfragment
V4
upper_95_ci_perct_bact
71387549490
upper_95_ci_perct_virus
12728421199
virus_bacteria_ratio
0.163752665
well
C12