human gut metagenome
ENA-FIRST-PUBLIC
2015-05-08T17:01:12Z
ENA-LAST-UPDATE
2018-03-09T13:24:42Z
External Id
SAMEA3376607
INSDC center name
CCME-COLORADO
INSDC first public
2015-05-08T17:01:12Z
INSDC last update
2018-03-09T13:24:42Z
INSDC status
suppressed
Submitter Id
qiime_ppdid_183:10129.000021577
acne_medication
No
acne_medication_otc
No
add_adhd
Self-diagnosed
age_months
57
age_years
4.75
alcohol_frequency
Never
alcohol_types_beer_cider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spirits_hard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic_to_i_have_no_food_allergies_that_i_know_of_
No
allergic_to_other
Yes
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
altitude
0
alzheimers
I do not have this condition
anonymized_name
000021577
antibiotic_condition
NaN
antibiotic_med
NaN
antibiotic_select
I have not taken antibiotics in the past year.
appendix_removed
No
asd
Diagnosed by a medical professional (doctor, physician assistant)
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth_month
July
birth_year
2010
bmi
18.5018530465
body_habitat
UBERON:feces
body_product
UBERON:feces
body_site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
Yes
cardiovascular_disease
I do not have this condition
cat
Yes
cat_contact
limited touch daily, share space and surfaces (i.e the couch)
cat_location
indoor only
cdiff
Unspecified
chickenpox
No
clinical_condition
Diagnosed by a medical professional (doctor, physician assistant)
collection_timestamp
2014-11-28 00:00:00
common_name
human gut metagenome
conditions_medication
Yes
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country_of_birth
United States
csection
No
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Unspecified
depth
0
diabetes
I do not have this condition
diet_restrictions_list
Don_t eat eggs._r_nOrganic produce and bread. Pasta, rice and meat are not organic. Don_t usually eat dairy, but not restricted from it. Had cheese in the week prior to the sample.
diet_type
Omnivore
dna_extracted
True
dog
No
dog_contact
NaN
dog_location
NaN
drinking_water_source
Filtered
elevation
179.677307129
env_biome
ENVO:dense settlement biome
env_feature
ENVO:human-associated habitat
env_matter
ENVO:feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_desert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Unspecified
gender
male
geographic location (country and/or sea)
USA: GAZ
gluten
Unspecified
hand
Unspecified
height_cm
96.52
height_or_length
96.52
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Never
host subject id
17f1ca002bcc0c4ada5c3dc5974ce8ca
host_taxid
9606
ibd
I do not have this condition
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
Unspecified
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
34.1175895
level_of_education
Unspecified
liver_disease
I do not have this condition
livingwith
Unspecified
longitude
-118.188329
lowgrain_diet_type
No
lung_disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
medication_list
thyroid (porcine) BUT this was discontinued 4 weeks ago and the plan is to test thyroid levels soon
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
No
nail
Yes
non_food_allergies_beestings
No
non_food_allergies_drug__e_g__penicillin_
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivy_oak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_condtitions_list
Autism_r_nSensory Processing Disorder_r_nSuspected auditory processing condition_r_nVarious speech diagnosis (delay, expressive and the understanding of language not matching up)
other_supplement_frequency
Yes
physical_specimen_location
UCSDMI
physical_specimen_remaining
True
pku
Unspecified
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
No
pregnant_due_date
NaN
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
y
race
Other
race_other
Half Caucasian (American); half Asian (Japanese)
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
relationships_with_others_in_study
NaN
required_sample_info_status
completed
roommates
Unspecified
roommates_in_study
Unspecified
salted_snacks_frequency
Daily
sample name
qiime_ppdid_183:10129.000021577
sample_type
Stool
scientific_name
human gut metagenome
seafood_frequency
Never
seasonal_allergies
No
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
No
special_restrictions
Yes
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
supplements
150 mg 5 HTP daily_r_nthyroid (porcine) was discontinued with Kyo 4 weeks ago. Vit D3 4000 IU daily (was 2000 until 1 week before sample) 0.5 mg melatonin before bed, cod liver oil 1/2 tsp daily, B12 500 mcg every other day, usually take a mineral drink and zinc but ran out a few days before the sample, methylfolate 400 mcg every other day, sometime vit e, occaisonally juice, he had some carrot juice the day of or in the days leading up to the sample
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
No
tot_mass
17.2365305586
travel_locations_list
NaN
vegetable_frequency
Occasionally (1-2 times/week)
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
weight_change
Remained stable
weight_kg
17.2365305586
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Regularly (3-5 times/week)
willing_to_be_contacted
Yes
zip_code
90042