bird metagenome
ENA first public
2016-08-17
ENA last update
2016-08-16
External Id
SAMEA4380364
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-17T17:01:11Z
INSDC last update
2016-08-16T03:26:14Z
INSDC status
public
Submitter Id
qiita_sid_1098:1098.egg.CAO.2009.383.712235
altitude
0
anonymized name
egg.CAO.2009.383
assigned_from_geo
True
biological_specimen
Tachycineta bicolor
body habitat
UBERON:egg
body product
UBERON:fertilized egg
body site
UBERON:egg shell
collection_timestamp
05/12/2009
cornell_id
383
depth
0
dna_extracted
True
elevation
1624.1
emp_id
egg.CAO.2009.383
env biome
temperate forest biome
env feature
nest of egg
env matter
egg
env package
host-associated
env_material
egg
geo loc name
USA
has_physical_specimen
True
host common name
tree swallow
host scientific name
Tachycineta bicolor
host subject id
egg.CAO.2009.383
host taxid
72873
latitude
33.661696
longitude
-117.84456100000001
misc_param
Every sample represents 10 seconds of swabbing. In the case of nest samples, collectors were instructed to swab all areas of the nest cup (not the wooden nestbox that the nest cup is resting in). And for egg samples, all eggs present were swabbed for a total of 10 seconds regardless of how many eggs were present.
nest id
C16
physical_specimen_location
Cornell
physical_specimen_remaining
False
public
True
required_sample_info_status
completed
sample name
qiita_sid_1098:1098.egg.CAO.2009.383.712235
sample type
egg
sample_code_1
2.0
sample_code_2
5.0
site
SJM
site id
CAO
sort
732.0
sort_anna
583
sort_juanma
732.0
state
CA
state_year
CA_2009
time collected
Missing: Not provided
year
2009