human gut metagenome
ENA first public
2016-10-14
ENA last update
2016-10-14
External Id
SAMEA4506934
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-10-14T17:01:47Z
INSDC last update
2016-10-14T01:31:43Z
INSDC status
public
Submitter Id
qiita_sid_10564:10564.3XAL3UBS
aborh
A+
age
60
age units
years
agvhd_gut
positive
agvhd_organ
gut
agvhd_severity
Grade I
anc_engrafment
yes
blood_type_donor1
A+
blood_type_donor2
Missing: Not applicable
bmi
33
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
chemotherapy_regimen
Flu/TBI
cmv status
positive
collection_timestamp
Missing: Restricted access
conditioning_intensity
Low intensity
cyclosporine
no
cytogenetics
normal
days_at_relapse
Missing: Not collected
days_to_anc_engrafment
22
days_to_platelet_engrafment
11
deceased
1
disease
TCL
disease_status_at_transplant
remission
dna_extracted
TRUE
donor id
V40XA5EG
donor source
pbsc
donor type
related
donor1_cmv_status
negative
donor1_match
10/10
donor1_sex
female
donor2_cmv_status
Missing: Not applicable
donor2_match
Missing: not applicable
donor2_sex
Missing: Not applicable
donor_or_patient
Patient
elevation
1564
env biome
urban biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
etiology_of_death
Relapse/Resipatory
geo loc name
USA:CO
gi_history_details
appendectomy, constipation, polyp, GERD
haplotype
A2/3, B7/15, C4/7, DR1/15, DQ5/6
host common name
human
host scientific name
Homo sapiens
host subject id
3XAL3UBS
host taxid
9606
infection_details
EBV
infection_duringafter_transplant
Enterococcus UTI
infection_prior_to_transplant
yes
latitude
39.76
longitude
-104.88
methotrexate
no
mmf
yes
other_viruses
HSV, VZV, EBV
pb_cd3_1_year
Missing: Not applicable
pb_cd3_day_100
Missing: Not applicable
pb_cd3_day_180
Missing: Not applicable
pb_cd3_day_30
71
pb_unfx_1_year
Missing: Not applicable
pb_unfx_day_100
91
pb_unfx_day_180
Missing: Not applicable
pb_unfx_day_30
Missing: Not collected
physical_specimen_location
University of Colorado, Anschutz
physical_specimen_remaining
FALSE
platelet_engrafment
yes
race
white
relapsed
yes
right_censor_time
61
sample name
qiita_sid_10564:10564.3XAL3UBS
sample type
stool
sex
female
sirolimus
no
tacrolimus
yes
time_to_agvhd
37
time_to_cgvhd
37
time_to_death
61