mouse gut metagenome
ENA-FIRST-PUBLIC
2012-02-28T17:00:34Z
ENA-KEYWORD
GSC, MIxS, MIMARKS
ENA-LAST-UPDATE
2018-03-09T09:54:22Z
External Id
SAMEA1035022
Geographic location (country:region,area)
Republic of Korea
Geographic location (latitude, longitude)
40 N 127 E
INSDC center name
KYRBD
INSDC first public
2012-02-28T17:00:34Z
INSDC last update
2018-03-09T09:54:22Z
INSDC status
public
Submitter Id
HFD6
collection date
2010-06-23
enviornmental package
host-associated
environment (biome)
terrestrial biome
environment (feature)
mammalia-associated habitat
environment (material)
faeces
host common name
house mouse
host taxid
10090
investigation type
MIMARKS-survey
pcr primers
V1-9F: 5'-X-AC-GAGTTTGATCMTGGCTCAG-3' and V3-541R: 5'-X-AC-WTTACCGCGGCTGCTGG-3' (where X denotes uniquely designed barcode for each mouse followed by a common linker AC)
project name
Bacterial diversity study from mice fed normal diet (ND), high fat diet (HFD) or HFD supplemented with KFLAB (HFD-KFLAB)
sample name
HFD6
scientific_name
mouse gut metagenome
sequencing method
Pyrosequencing
target gene
16S rRNA