human gut metagenome
collection_date
2017
env_broad_scale
human-associated habitat [ENVO:00009003]
env_local_scale
intestine environment [ENVO: 2100002]
env_medium
feces [ENVO:00002003]
geo_loc_name
USA: State of Colorado, Larimer County, City of Fort Collins
host
Homo sapiens
lat_lon
40.5853 N 105.0844 W
elevation
1525 m
host_sex
male
host_tissue_sampled
feces [BTO:0000440]
host_body_habitat
gastrointestinal tract
host_diet
30g/day rice bran for 28 days
samp_store_temp
-80 Celsius
murine_treatment_diet
not applicable
murine_treatment_water
not applicable
murine_diet_access
not applicable
murine_water_access
not applicable
murine_strain
not applicable
murine_age
not applicable
murine_weight
not applicable
extracted_DNA_store_temp
-20 Celsius
extracted_DNA_kit_used
MoBio PowerSoil Kit
16S_rRNA_gene_target_region
V4
forward_primer
515F (Parada)
forward_primer_sequence
GTGYCAGCMGCCGCGGTAA
reverse_primer
806R (Aprill)
reverse_primer_sequence
GGACTACNVGGGTWTCTAAT
sequencing_platform
Illumina MiSeq
sampledata_SampleID
M02R_si04
sampledata_OrigInocGroup
T2
sampledata_AnimalNum
human
sampledata_Consortium
Rice.bran.modified.Microbial.Consortium
sampledata_ConsortiumAbrv
RMC
sampledata_ConsortiumLab
R
sampledata_DonorGroupConsortium
Male02.Rice.bran
sampledata_Type
stool.inoculum
sampledata_TypeLab
s
sampledata_ConsortiumType
R.s
sampledata_AnimalSex
human
sampledata_HumanDonorSex
Male
sampledata_HumanDonorSexAbrv
m
sampledata_ConHumDonSex
RMC.m
sampledata_TreatmentCage
not.app
sampledata_TimeDays
not.app
sampledata_TimeNumber
not.app
sampledata_ExperimentTime
not.app
sampledata_ExperimentNum
not.app
sampledata_MTXBarcode
CGCAAGCCCGCG
sampledata_MTXPlateID
5
sampledata_MTXWellID
C2
sampledata_MTXHend_lib6_tfaun_SampleID
M02B_inoc_04
sampledata_MTXOrigSampleID
T2inoc4
sampledata_MTXSFormat
S410
sampledata_MTXOrigSort
410
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated