mouse gut metagenome
ENA first public
2015-05-25
ENA last update
2016-10-21
External Id
SAMEA3316600
INSDC center alias
MHH
INSDC center name
Hannover Medical School
INSDC first public
2015-05-25T17:01:19Z
INSDC last update
2016-10-21T09:39:15Z
INSDC status
public
Submitter Id
WT_Adult2_M53
adapters
5'-CCATCTCATCCCTGCGTGTCTCCGAC-TCAG-3', 5'-CCTATCCCCTGTGTGCCTTGGCAGTCTCAG-TC-3'
collection date
2012-04-27
environment (biome)
Animal facility
environment (feature)
Animal facility
environment (material)
small intestine
geographic location (country and/or sea)
Germany
geographic location (latitude)
48
geographic location (longitude)
7.8
host age
74
host body habitat
small intestine
host body site
small intestine
host common name
house mouse
host family relationship
Litter 5
host genotype
WT
host life stage
adult
host sex
male
host subject id
53
host taxid
10090
host-associated environmental package
host-associated
investigation type
mimarks-survey
multiplex identifiers
ACGCTCGACA
pcr primers
8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R
project name
Interferon-gamma and interleukin-22 cooperate for the induction of interferon-stimulated genes and control of rotavirus infection
sample name
WT_Adult2_M53
sequencing method
pyrosequencing
target gene
16S rDNA
target subfragment
V1 - V3