mouse gut metagenome
ENA first public
2015-05-25
ENA last update
2016-10-21
External Id
SAMEA3316589
INSDC center alias
MHH
INSDC center name
Hannover Medical School
INSDC first public
2015-05-25T17:01:19Z
INSDC last update
2016-10-21T09:39:15Z
INSDC status
public
Submitter Id
MX_lamdaR_KO1_M32
adapters
5'-CCATCTCATCCCTGCGTGTCTCCGAC-TCAG-3', 5'-CCTATCCCCTGTGTGCCTTGGCAGTCTCAG-TC-3'
collection date
2014-04-15
environment (biome)
Animal facility
environment (feature)
Animal facility
environment (material)
small intestine
geographic location (country and/or sea)
Germany
geographic location (latitude)
48
geographic location (longitude)
7.8
host age
7
host body habitat
small intestine
host body site
small intestine
host common name
house mouse
host family relationship
Litter 4
host genotype
B6.A2G-Mx1-Ifnlr1-/-
host life stage
suckling
host sex
not determined
host subject id
32
host taxid
10090
host-associated environmental package
host-associated
investigation type
mimarks-survey
multiplex identifiers
ACGAGTGCGT
pcr primers
8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R
project name
Interferon-gamma and interleukin-22 cooperate for the induction of interferon-stimulated genes and control of rotavirus infection
sample name
MX_lamdaR_KO1_M32
sequencing method
pyrosequencing
target gene
16S rDNA
target subfragment
V1 - V3