mouse gut metagenome
collection_date
2017
env_broad_scale
mammalia-associated habitat [ENVO:00009002]
env_local_scale
intestine environment [ENVO: 2100002]
env_medium
organic material [ENVO: 01000155]
geo_loc_name
USA: State of Colorado, Larimer County, City of Fort Collins
host
Mus musculus
lat_lon
40.5853 N 105.0844 W
elevation
1525 m
host_sex
female
host_tissue_sampled
right colon [BTO:0000649]
host_body_habitat
gastrointestinal tract
host_diet
purified rodent diet AIN-93M
samp_store_temp
-80 Celsius
murine_treatment_diet
gamma-irradiated
murine_treatment_water
autoclaved
murine_diet_access
ad libitum
murine_water_access
ad libitum
murine_strain
C57BL6J
murine_age
8-10 weeks
murine_weight
20-25 grams
extracted_DNA_store_temp
-20 Celsius
extracted_DNA_kit_used
MoBio PowerSoil Kit
16S_rRNA_gene_target_region
V4
forward_primer
515F (Parada)
forward_primer_sequence
GTGYCAGCMGCCGCGGTAA
reverse_primer
806R (Aprill)
reverse_primer_sequence
GGACTACNVGGGTWTCTAAT
sequencing_platform
Illumina MiSeq
sampledata_SampleID
M02R_a14_e1te_CO_P
sampledata_OrigInocGroup
T2
sampledata_AnimalNum
a14
sampledata_Consortium
Rice.bran.modified.Microbial.Consortium
sampledata_ConsortiumAbrv
RMC
sampledata_ConsortiumLab
R
sampledata_DonorGroupConsortium
Male02.Rice.bran
sampledata_Type
colon.Proximal
sampledata_TypeLab
P
sampledata_ConsortiumType
R.P
sampledata_AnimalSex
Female
sampledata_HumanDonorSex
Male
sampledata_HumanDonorSexAbrv
m
sampledata_ConHumDonSex
RMC.m
sampledata_TreatmentCage
R.1
sampledata_TimeDays
91
sampledata_TimeNumber
end
sampledata_ExperimentTime
e1te
sampledata_ExperimentNum
1
sampledata_MTXBarcode
GCTGCCCACCTA
sampledata_MTXPlateID
2
sampledata_MTXWellID
C5
sampledata_MTXHend_lib6_tfaun_SampleID
M02B_14_CO_P
sampledata_MTXOrigSampleID
T2-14-CO-P
sampledata_MTXSFormat
S125
sampledata_MTXOrigSort
125
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated