PDAC005T
Homo sapiens
Protocols: two tumor sampling methods from patients with PDAC: 1- surgery for patients with tumor size < 2cm, and 2- Endoscopic Ultrasound-Guided Fine-Needle Aspiration (EUS-FNA) for patients with tumor size > 2cm. this information is given by the \Resectable\ variable. For operated patients (with surgery), tumor tissues were xenografted directly. However, biopsy tissues were grown in culture for 1 or 2 days, before transplanted to the nude mouse. The final xenograft samples were collected from mouse when tumors reached a size of 1 cm. The \Differentiation\, \Fibrosis\, \Inflammation\ information are estimated on the collected xenograft tissues. miRNA-Seq libraries are performed from at least 1ug of extracted total RNA with a RIN greater than 7. Before starting, total RNAs are purified with Trizol-GT & miRNeasy kit wich allows the selection of the small RNA fraction less than 100b.
ENA-FIRST-PUBLIC
2017-12-12T17:02:53Z
ENA-LAST-UPDATE
2017-03-07T13:50:10Z
External Id
SAMEA103893896
INSDC center name
Programme Carte dâ€™Identite des Tumeurs
INSDC first public
2017-12-12T17:02:53Z
INSDC last update
2017-03-07T13:50:10Z
INSDC status
public
ProportionMurineRNA
0.21
Submitter Id
E-MTAB-5018:PDAC005T
broker name
ArrayExpress
common name
human
disease
pancreatic ductal adenocarcinoma
individual
PDAC005
organism status
not available
resectable
not available
sample name
E-MTAB-5018:PDAC005T
scientific_name
Homo sapiens
sex
male
survival time
not available
xenograft
pancreatic cancer cells grown in nude mouse
xenograft CIMPclass
false
xenograft MultiOmicsClassification
basal
xenograft differentiation
not available
xenograft fibrosis
not available
xenograft inflammation
not available