Helgoland White Mass MAG 10
uncultured Aureispira sp.
This sample represents a MAG from the metagenomic samples ERS4226203,ERS4226204,ERS4226205
ENA-FIRST-PUBLIC
2020-07-10T17:05:06Z
ENA-LAST-UPDATE
2020-01-09T18:34:57Z
External Id
SAMEA6463008
INSDC center name
MPIBREMEN
INSDC first public
2020-07-10T17:05:06Z
INSDC last update
2020-01-09T18:34:57Z
INSDC status
public
Submitter Id
HLG_WM_MAG_10
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;kmer set 21,31,41,51,61,71,81,91,101,111,121,127, otherwise default parameters
binning parameters
differential coverage across 3 samples, 4-mer frequencies
binning software
MetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi'O v. 5.2
collection date
2015-10
completeness score
93.07
completeness software
CheckM v. 1.0.7
contamination score
1
environment (biome)
marine biome
environment (feature)
biofilm
environment (material)
biofilm material
geographic location (country and/or sea)
Germany
geographic location (latitude)
N54.1879
geographic location (longitude)
E7.8779
investigation type
metagenome-assembled genome
isolation source
White filamentous biomass growing on seagrass stems near kelp deposits on a beach at Helgoland
metagenomic source
biofilm metagenome
project name
PRJEB36085
sample derived from
ERS4228496
sample name
HLG_WM_MAG_10
scientific_name
uncultured Aureispira sp.
sequencing method
Illumina HiSeq
taxonomic identity marker
Genome Taxonomy Database classifier (120 protein markers)