10512.AI
human gut metagenome
sigmoid colon hartmann
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016045
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AI
age
20
age cat
under 3
age unit
months
anonymized name
AI
body habitat
UBERON:colon
body product
UBERON:mucosa of colon
body site
UBERON:mucosa of colon
breastmilk
0
chao1_mean
548.6352144
chao1_med
546.1847826
chao1_stdv
131.6515484
collection_timestamp
2/7/13
diagnosis
Midgut volvulous (acute)
diet
unfed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H012
individual
H012
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
207.0
observed_species_med
207.5
observed_species_stdv
13.41640786
orig name
AI
pd_whole_tree_mean
12.404237
pd_whole_tree_med
12.46319
pd_whole_tree_stdv
0.638132253
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Hartmann's
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AI
sample type
sigmoid colon hartmann
sample_name_old
29b.829956
sample_plate
CHLA_Plate1
sex
male
shannon_mean
5.06692298
shannon_med
5.077913049
shannon_stdv
0.044841941