10512.C
human gut metagenome
proximal loop ileostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016049
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.C
age
6
age cat
under 3
age unit
months
anonymized name
C
body habitat
UBERON:ileum
body product
UBERON:ileal mucosa
body site
UBERON:ileal mucosa
breastmilk
1
chao1_mean
497.1819788
chao1_med
493.0492958
chao1_stdv
35.03460155
colitis_atresia
Small Intestine Colitis
collection_timestamp
11/28/12
diagnosis
FIP (interval stoma takedown)
diet
fed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H005
individual
H005
latitude
34.05
longitude
-118.25
luminal_status
small intestine fed
mastermix_id
14509333
observed_species_mean
322.7
observed_species_med
324.0
observed_species_stdv
3.945461528
orig name
C
pd_whole_tree_mean
17.493206
pd_whole_tree_med
17.365045
pd_whole_tree_stdv
0.307363251
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.C
sample type
proximal loop ileostomy
sample_name_old
17a.829960
sample_plate
CHLA_Plate1
sex
male
shannon_mean
6.276635143
shannon_med
6.278545858
shannon_stdv
0.024988076