10512.AB.2
human gut metagenome
ileostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016041
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AB.2
age
6
age cat
under 3
age unit
months
anonymized name
AB
body habitat
UBERON:ileum
body product
UBERON:ileal mucosa
body site
UBERON:ileal mucosa
breastmilk
1
chao1_mean
423.6954332
chao1_med
421.1611406
chao1_stdv
56.34044623
colitis_atresia
Small Intestine Colitis
collection_timestamp
12/12/12
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
fed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H007
individual
H007
latitude
34.05
longitude
-118.25
luminal_status
small intestine fed
mastermix_id
14509333
observed_species_mean
184.2
observed_species_med
185.0
observed_species_stdv
4.391911758
orig name
AB.2
pd_whole_tree_mean
11.400909
pd_whole_tree_med
11.360375
pd_whole_tree_stdv
0.63484474
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
7
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AB.2
sample type
ileostomy
sample_name_old
20a.829962
sample_plate
CHLA_Plate3
sex
female
shannon_mean
3.716601663
shannon_med
3.720805908
shannon_stdv
0.035219183