10512.GG
human gut metagenome
colon mucous fistula
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016077
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GG
age
18
age cat
under 3
age unit
months
anonymized name
GG
body habitat
UBERON:colon
chao1_mean
354.7097534
chao1_med
330.1568627
chao1_stdv
78.12511112
colitis_atresia
Colon Atresia
collection_timestamp
10/1/13
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
unfed
dna_extracted
True
elevation
93
env package
host-associated
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H032
individual
H032
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
147.5
observed_species_med
147.5
observed_species_stdv
6.168918508
orig name
GG
pd_whole_tree_mean
10.167772
pd_whole_tree_med
10.335765
pd_whole_tree_stdv
0.419999631
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Fistula
primer_date
22114
primer_plate
6
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GG
sample type
colon mucous fistula
sample_name_old
64
sample_plate
CHLA_Plate2
sex
female
shannon_mean
4.565832065
shannon_med
4.564679821
shannon_stdv
0.037780003