Rumen Uncultured Genome RUG14936
Oscillospiraceae bacterium
Cattle rumen microbiome RUG RUG14936 Ruminococcaceae bacterium
assembly software
IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
environment (material)
bodily fluid
collection date
not collected
sample derived from
ERS3947788
geographic location (longitude)
-3.206493
binning parameters
tetra-nucleotide frequencies and abundance
contamination score
0.67
reference for biomaterial
Stewart RD, Auffret MD, Warr A, Walker AW, Roehe R, Watson M. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. (2019) Nat Biotechnol. 37(8):953-961. doi: 10.1038/s41587-019-0202-3.
ENA-FIRST-PUBLIC
2019-11-14T04:04:37Z
ENA-LAST-UPDATE
2019-11-01T20:36:47Z
completeness software
CheckM
environment (biome)
Bos taurus
environment (feature)
stomach
geographic location (country and/or sea)
United Kingdom
binning software
MetaBAT2
organism
Ruminococcaceae bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach - MAGpy - Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M. (2019) MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). Bioinformatics. 35(12):2150-2152. doi: 10.1093/bioinformatics/bty905
completeness score
93.62
geographic location (latitude)
55.861398
scientific_name
Ruminococcaceae bacterium
investigation type
metagenome
metagenomic source
bovine gut metagenome
project name
Metagenomic sequencing of the rumen of 240 cattle from Scotland
sequencing method
Illumina HiSeq 4000
isolation_source
cattle rumen
ENA-FIRST-PUBLIC
2019-11-14
ENA-LAST-UPDATE
2019-11-01