10512.AC
human gut metagenome
ileum hartmann
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016042
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AC
age
6
age cat
under 3
age unit
months
anonymized name
AC
body habitat
UBERON:ileum
body product
UBERON:ileal mucosa
body site
UBERON:ileal mucosa
breastmilk
1
chao1_mean
388.2969518
chao1_med
359.25
chao1_stdv
78.67228592
colitis_atresia
Small Intestine Colitis
collection_timestamp
12/12/12
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
unfed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H007
individual
H007
latitude
34.05
longitude
-118.25
luminal_status
small intestine unfed
mastermix_id
14509333
observed_species_mean
133.9
observed_species_med
133.5
observed_species_stdv
6.154492487
orig name
AC
pd_whole_tree_mean
8.084326
pd_whole_tree_med
8.01842
pd_whole_tree_stdv
0.754703159
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AC
sample type
ileum hartmann
sample_name_old
20b.829958
sample_plate
CHLA_Plate1
sex
female
shannon_mean
2.066936382
shannon_med
2.067898321
shannon_stdv
0.048307393