Fogo soil gDNA metabarcoding 2015-09-15
soil metagenome
Fogo soil gDNA metabarcoding 2015-09-15 undated eruptive event
ENA-FIRST-PUBLIC
2020-02-24T17:09:03Z
ENA-LAST-UPDATE
2020-02-24T09:31:29Z
External Id
SAMEA6585478
INSDC center name
CNRS
INSDC first public
2020-02-24T17:09:03Z
INSDC last update
2020-02-24T09:31:29Z
INSDC status
public
Submitter Id
ND9_A2
amount or size of sample collected
40
collection date
2016-09
environment (biome)
surface soil
environment (feature)
lava flow
environment (material)
soil
geographic location (country and/or sea)
Cape Verde
geographic location (depth)
0
geographic location (elevation)
319
geographic location (latitude)
14.921799
geographic location (longitude)
-24.294346
investigation type
metagenome
library reads sequenced
55808
pcr conditions
initial_denaturation=94degC_5min; 30cycles(denaturation=94degC_1min;primer_annealing=58degC_45 sec;extension=72degC_45sec);final_extension=72degC_7min;
pcr primers
515F-tag / 909R-tag
ph
7.9
project name
FOGO
sample name
ND9_A2
sample weight for DNA extraction
0.5
scientific_name
soil metagenome
sequencing method
illumina MiSeq
soil environmental package
soil
storage conditions (fresh/frozen/other)
frozen/-20°C
total nitrogen (%)
0.11
total nitrogen (g n/kg soil)
1.1
total organic carbon
16.9
total organic carbon (%)
1.69