10512.B.2
human gut metagenome
ileum hartmann
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016048
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.B.2
age
13
age cat
under 3
age unit
months
anonymized name
B
body habitat
UBERON:ileum
body product
UBERON:ileal mucosa
body site
UBERON:ileal mucosa
breastmilk
1
chao1_mean
282.4910643
chao1_med
279.8888889
chao1_stdv
20.45980857
colitis_atresia
Small Intestine Atresia
collection_timestamp
11/16/12
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
unfed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H003
individual
H003
latitude
34.05
longitude
-118.25
luminal_status
small intestine unfed
mastermix_id
14509333
observed_species_mean
163.7
observed_species_med
164.0
observed_species_stdv
3.831158804
orig name
B.2
pd_whole_tree_mean
9.7174
pd_whole_tree_med
9.69959
pd_whole_tree_stdv
0.203550602
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
7
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.B.2
sample type
ileum hartmann
sample_name_old
16b.829959
sample_plate
CHLA_Plate3
sex
female
shannon_mean
3.440860543
shannon_med
3.444294315
shannon_stdv
0.017695191