10512.GJ.2
human gut metagenome
colon mucous fistula
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016079
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GJ.2
age
21
age cat
under 3
age unit
months
anonymized name
GJ
body habitat
UBERON:colon
breastmilk
1
chao1_mean
385.345933
chao1_med
374.9703947
chao1_stdv
64.26867251
colitis_atresia
Colon Atresia
collection_timestamp
12/10/13
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
unfed
dna_extracted
True
elevation
93
env package
host-associated
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal
host common name
human
host subject id
H037
individual
H037
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
160.2
observed_species_med
159.5
observed_species_stdv
9.818350167
orig name
GJ.2
pd_whole_tree_mean
11.522304
pd_whole_tree_med
11.495405
pd_whole_tree_stdv
0.572668275
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Fistula
primer_date
22114
primer_plate
7
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GJ.2
sample type
colon mucous fistula
sample_name_old
75b
sample_plate
CHLA_Plate3
sex
male
shannon_mean
2.823413038
shannon_med
2.833662032
shannon_stdv
0.063163829