10512.AA
human gut metagenome
colon mucous fistula
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016040
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AA
age
9
age cat
under 3
age unit
months
anonymized name
AA
body habitat
UBERON:colon
body product
UBERON:mucosa of colon
body site
UBERON:mucosa of colon
breastmilk
1
chao1_mean
300.801675
chao1_med
281.0833333
chao1_stdv
52.95519008
colitis_atresia
Colon Atresia
collection_timestamp
12/6/12
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
unfed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H006
individual
H006
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
120.7
observed_species_med
120.0
observed_species_stdv
7.196449742
orig name
AA
pd_whole_tree_mean
9.022946
pd_whole_tree_med
9.11593
pd_whole_tree_stdv
0.34309553
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Fistula
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AA
sample type
colon mucous fistula
sample_name_old
19b.829931
sample_plate
CHLA_Plate1
sex
female
shannon_mean
4.073772371
shannon_med
4.068838139
shannon_stdv
0.050335342