Rhizosphere soil microbiome
soil metagenome
ENA-FIRST-PUBLIC
2021-01-15T04:14:38Z
ENA-LAST-UPDATE
2020-08-09T02:36:20Z
External Id
SAMEA7159858
INSDC center name
NORTH-WEST UNIVERSITY
INSDC first public
2021-01-15T04:14:38Z
INSDC last update
2020-08-09T02:36:20Z
INSDC status
public
Submitter Id
F4R
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
MEGAHIT
binning parameters
1000 minimum contig length
binning software
MaxBin
collection date
2019
completeness score
90
completeness software
QUAST
contamination score
2
environment (biome)
soil
environment (feature)
rhizosphere soil
environment (material)
soil
geographic location (country and/or sea)
South Africa
geographic location (latitude)
25°85'S
geographic location (longitude)
25⁰63'33''E
investigation type
metagenome
isolation source
rhizosphere soil
metagenomic source
soil metagenome
project name
Rhizosphere metagenome
sample derived from
ERS000477
sample name
F4R
scientific_name
soil metagenome
sequencing method
illumina
taxonomic identity marker
107 bacterial gene set marker