Endotracheal catheter secretion sample collected from significantly preterm neonates
human gut metagenome
ENA-FIRST-PUBLIC
2019-01-09T17:03:32Z
ENA-LAST-UPDATE
2018-07-18T09:48:58Z
External Id
SAMEA4795864
INSDC center name
NORTHUMBRIA UNIVERSITY, NEWCASTLE
INSDC first public
2019-01-09T17:03:32Z
INSDC last update
2018-07-18T09:48:58Z
INSDC status
public
Submitter Id
Ep52
amount or size of sample collected
0.5
collection date
2015
environment (biome)
Severely preterm infant
environment (feature)
Gastrointestinal tract
environment (material)
Endotracheal catheter secretion
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
54.979608
geographic location (longitude)
-1.621687
geographic location (region and locality)
Newcastle upon Tyne, Tyne & Wear
host body product
Mucus
human associated environmental package
human-associated
investigation type
mimarks-survey
pcr primers
515F and 806R (Caporaso et al., 2011)
perturbation
Prophylactic probiotics & antifungals. Intubated with nasogastric feeding tube and endotracheal airway tube
project name
SERVIS research Project
sample collection device or method
Flushed catheter lumen
sample name
Ep52
sample storage location
Northumbria University
sample storage temperature
-80
sample volume or weight for DNA extraction
0.1
scientific_name
human gut metagenome
sequencing method
Illumina Sequencing by synthesis
target gene
16s rRNA gene
target subfragment
V4 region