10512.AF
human gut metagenome
colostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016043
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AF
age
16
age cat
under 3
age unit
months
anonymized name
AF
body habitat
UBERON:colon
body product
UBERON:mucosa of colon
body site
UBERON:mucosa of colon
breastmilk
1
chao1_mean
482.8646285
chao1_med
475.3182432
chao1_stdv
58.00065911
colitis_atresia
Colon Atresia
collection_timestamp
1/30/13
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
fed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H011
individual
H011
latitude
34.05
longitude
-118.25
luminal_status
colon fed
mastermix_id
14509333
observed_species_mean
244.8
observed_species_med
244.5
observed_species_stdv
9.25922963
orig name
AF
pd_whole_tree_mean
13.610439
pd_whole_tree_med
13.76363
pd_whole_tree_stdv
0.634665323
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AF
sample type
colostomy
sample_name_old
28a.829945
sample_plate
CHLA_Plate1
sex
male
shannon_mean
4.474116314
shannon_med
4.452406774
shannon_stdv
0.071102897