10512.AL.2
human gut metagenome
ileostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016046
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AL.2
age
5
age cat
under 3
age unit
months
anonymized name
AL
body habitat
UBERON:ileum
body product
UBERON:ileal mucosa
body site
UBERON:ileal mucosa
breastmilk
1
chao1_mean
183.6967287
chao1_med
179.5142857
chao1_stdv
29.74496988
colitis_atresia
Small Intestine Colitis
collection_timestamp
1/10/13
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
fed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H009
individual
H009
latitude
34.05
longitude
-118.25
luminal_status
small intestine fed
mastermix_id
14509333
observed_species_mean
83.3
observed_species_med
82.5
observed_species_stdv
6.750308635
orig name
AL.2
pd_whole_tree_mean
6.718503
pd_whole_tree_med
6.595525
pd_whole_tree_stdv
0.450097088
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
7
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AL.2
sample type
ileostomy
sample_name_old
24a.5moF.829969
sample_plate
CHLA_Plate3
sex
female
shannon_mean
1.45560853
shannon_med
1.462331098
shannon_stdv
0.061567444