lake water sample Rotsee
metagenome
lake water filtered onto a 0.22um filter from which DNA was extracted. pmoA genes were amplified and Illumina sequenced.
ENA-FIRST-PUBLIC
2019-01-02T17:02:33Z
ENA-LAST-UPDATE
2018-09-05T15:39:14Z
External Id
SAMEA4886462
INSDC center name
ETH
INSDC first public
2019-01-02T17:02:33Z
INSDC last update
2018-09-05T15:39:14Z
INSDC status
public
Submitter Id
A20_pmoA
collection date
2013-06-01
common name
environmental bacteria
environment (biome)
sub-alpine freshwater lake
environment (feature)
freshwater lake
environment (material)
water
geographic location (country and/or sea)
Switzerland
geographic location (depth)
14
geographic location (latitude)
47.072 N
geographic location (longitude)
8.319 E
investigation type
metagenome
light zone
Aphotic
primer (f, r)
A189f and mb661r (5�-GGNGACTGGGACTTCTGG-3�, 5�-CCGGMGCAACGTCYTTACC-3�)
project name
Mechanisms shaping methane-oxidizing bacterial communities in a stratified sub-alpine lake
sample name
A20_pmoA
scientific_name
metagenome
sequencing method
Illumina MiSeq
water environmental package
water