10512.AM
human gut metagenome
colon hartmann
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016047
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:11Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.AM
age
5
age cat
under 3
age unit
months
anonymized name
AM
body habitat
UBERON:colon
body product
UBERON:mucosa of colon
body site
UBERON:mucosa of colon
breastmilk
1
chao1_mean
248.0023351
chao1_med
248.7560241
chao1_stdv
4.458787648
colitis_atresia
Colon Colitis
collection_timestamp
1/10/13
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
unfed
dna_extracted
True
elevation
93
env biome
human-associated habitat
env feature
human-associated habitat
env package
host-associated
env_material
feces
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H009
individual
H009
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
208.7
observed_species_med
208.5
observed_species_stdv
1.251665557
orig name
AM
pd_whole_tree_mean
8.485017
pd_whole_tree_med
8.54985
pd_whole_tree_stdv
0.150613826
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Hartmann's
primer_date
22114
primer_plate
5
processing_robot
JERE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.AM
sample type
colon hartmann
sample_name_old
24b.5moF.829935
sample_plate
CHLA_Plate1
sex
female
shannon_mean
3.321588313
shannon_med
3.321087555
shannon_stdv
0.006355939