10512.GK
human gut metagenome
colostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016080
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GK
age
0
age cat
under 3
age unit
months
anonymized name
GK
body habitat
UBERON:colon
breastmilk
1
chao1_mean
407.919333
chao1_med
433.8
chao1_stdv
76.26249189
colitis_atresia
Colon Atresia
collection_timestamp
12/12/13
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
fed
dna_extracted
True
elevation
93
env package
host-associated
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal lining from stem cells; human experimental
host common name
human
host subject id
H038
individual
H038
latitude
34.05
longitude
-118.25
luminal_status
colon fed
mastermix_id
14509333
observed_species_mean
122.9
observed_species_med
122.0
observed_species_stdv
6.935416354
orig name
GK
pd_whole_tree_mean
7.803673
pd_whole_tree_med
7.915255
pd_whole_tree_stdv
0.578059463
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Fistula
primer_date
22114
primer_plate
8
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GK
sample type
colostomy
sample_plate
CHLA_Plate16
sex
male
shannon_mean
2.954093989
shannon_med
2.957859563
shannon_stdv
0.050307849