10512.GR
human gut metagenome
colon mucous fistula
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016084
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GR
age
0
age cat
under 3
age unit
months
anonymized name
GR
body habitat
UBERON:colon
breastmilk
1
chao1_mean
496.2333233
chao1_med
473.1
chao1_stdv
76.40184186
colitis_atresia
Colon Atresia
collection_timestamp
3/12/14
diagnosis
Imperforate anus (interval stoma takedown)
diagnosis_simple
atresia
diet
unfed
dna_extracted
True
elevation
93
env package
host-associated
etiology
obstructive
experiment_design_description
2 projects: mouse experimental regeneration of intestinal
host common name
human
host subject id
H041
individual
H041
latitude
34.05
longitude
-118.25
luminal_status
colon unfed
mastermix_id
14509333
observed_species_mean
222.4
observed_species_med
221.5
observed_species_stdv
4.452215429
orig name
GR
pd_whole_tree_mean
13.230993
pd_whole_tree_med
13.21212
pd_whole_tree_stdv
0.334486143
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
pouch
Fistula
primer_date
22114
primer_plate
8
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GR
sample type
colon mucous fistula
sample_plate
CHLA_Plate11
sex
female
shannon_mean
5.187389588
shannon_med
5.185522991
shannon_stdv
0.01769066