10512.GP
human gut metagenome
ileum hartmann
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016082
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GP
age
0
age cat
under 3
age unit
months
anonymized name
GP
body habitat
UBERON:ileum
breastmilk
1
chao1_mean
324.9174417
chao1_med
327.65
chao1_stdv
106.0303107
colitis_atresia
Small Intestine Colitis
collection_timestamp
3/5/14
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
unfed
dna_extracted
True
elevation
93
env package
host-associated
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal
host common name
human
host subject id
H040
individual
H040
latitude
34.05
longitude
-118.25
luminal_status
small intestine unfed
mastermix_id
14509333
observed_species_mean
107.5
observed_species_med
106.5
observed_species_stdv
7.26100697
orig name
GP
pd_whole_tree_mean
4.842858
pd_whole_tree_med
4.68194
pd_whole_tree_stdv
0.585015543
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
8
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GP
sample type
ileum hartmann
sample_plate
CHLA_Plate9
sex
male
shannon_mean
2.534771258
shannon_med
2.528477127
shannon_stdv
0.027841014