10512.GO
human gut metagenome
ileostomy
ENA first public
2016-06-01
ENA last update
2016-05-27
External Id
SAMEA4016081
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-06-01T17:01:04Z
INSDC last update
2016-05-27T23:02:13Z
INSDC status
public
Submitter Id
qiita_sid_10512:10512.GO
age
0
age cat
under 3
age unit
months
anonymized name
GO
body habitat
UBERON:ileum
breastmilk
1
chao1_mean
404.4485172
chao1_med
400.2152392
chao1_stdv
35.87160753
colitis_atresia
Small Intestine Colitis
collection_timestamp
3/5/14
diagnosis
NEC (interval stoma takedown)
diagnosis_simple
NEC
diet
fed
dna_extracted
True
elevation
93
env package
host-associated
etiology
infectious
experiment_design_description
2 projects: mouse experimental regeneration of intestinal
host common name
human
host subject id
H040
individual
H040
latitude
34.05
longitude
-118.25
luminal_status
small intestine fed
mastermix_id
14509333
observed_species_mean
242.3
observed_species_med
240.0
observed_species_stdv
4.191260749
orig name
GO
pd_whole_tree_mean
8.740278
pd_whole_tree_med
8.708165
pd_whole_tree_stdv
0.319881614
physical_specimen_location
UCSDMI
physical_specimen_remaining
False
primer_date
22114
primer_plate
8
processing_robot
ROBE
project name
CHLA
sample center
CHLA
sample name
qiita_sid_10512:10512.GO
sample type
ileostomy
sample_plate
CHLA_Plate14
sex
male
shannon_mean
4.224430483
shannon_med
4.230455714
shannon_stdv
0.028779413