Rumen Uncultured Genome RUG10131
Oscillospiraceae bacterium
Cattle rumen microbiome RUG RUG10131 Ruminococcaceae bacterium
assembly software
IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
environment (material)
bodily fluid
collection date
not collected
sample derived from
ERS3617417
geographic location (longitude)
-3.206493
binning parameters
tetra-nucleotide frequencies and abundance
contamination score
7.34
reference for biomaterial
Stewart RD, Auffret MD, Warr A, Walker AW, Roehe R, Watson M. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. (2019) Nat Biotechnol. 37(8):953-961. doi: 10.1038/s41587-019-0202-3.
ENA-FIRST-PUBLIC
2019-11-13T17:04:45Z
ENA-LAST-UPDATE
2019-11-01T20:33:38Z
completeness software
CheckM
environment (biome)
Bos taurus
environment (feature)
stomach
geographic location (country and/or sea)
United Kingdom
binning software
MetaBAT2
organism
Ruminococcaceae bacterium
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
taxonomic identity marker
multi-marker approach - MAGpy - Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M. (2019) MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). Bioinformatics. 35(12):2150-2152. doi: 10.1093/bioinformatics/bty905
completeness score
88.93
geographic location (latitude)
55.861398
scientific_name
Ruminococcaceae bacterium
investigation type
metagenome
metagenomic source
bovine gut metagenome
project name
Metagenomic sequencing of the rumen of 240 cattle from Scotland
sequencing method
Illumina HiSeq 4000
isolation_source
cattle rumen
ENA-FIRST-PUBLIC
2019-11-13
ENA-LAST-UPDATE
2019-11-01