Rumen Uncultured Genome RUG14707
uncultured Erysipelotrichaceae bacterium
Cattle rumen microbiome RUG RUG14707 uncultured Erysipelotrichaceae bacterium
ENA-FIRST-PUBLIC
2019-11-14T04:04:37Z
ENA-LAST-UPDATE
2019-11-01T20:36:38Z
External Id
SAMEA6152846
INSDC center name
THE ROSLIN INSTITUTE
INSDC first public
2019-11-14T04:04:37Z
INSDC last update
2019-11-01T20:36:38Z
INSDC status
public
Submitter Id
RUG14707
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
binning parameters
tetra-nucleotide frequencies and abundance
binning software
MetaBAT2
collection date
not collected
completeness score
84.27
completeness software
CheckM
contamination score
5.62
environment (biome)
Bos taurus
environment (feature)
stomach
environment (material)
bodily fluid
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
55.861398
geographic location (longitude)
-3.206493
investigation type
metagenome
isolation source
cattle rumen
metagenomic source
bovine gut metagenome
project name
Metagenomic sequencing of the rumen of 240 cattle from Scotland
reference for biomaterial
Stewart RD, Auffret MD, Warr A, Walker AW, Roehe R, Watson M. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. (2019) Nat Biotechnol. 37(8):953-961. doi: 10.1038/s41587-019-0202-3.
sample derived from
ERS3629376
sample name
RUG14707
scientific_name
uncultured Erysipelotrichaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach - MAGpy - Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M. (2019) MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). Bioinformatics. 35(12):2150-2152. doi: 10.1093/bioinformatics/bty905