SOX_BS_3386_Z MAG sample
symbiont metagenome
16S rRNA recovered
Yes
16S rRNA recovery software
Barrnap;0.9
ENA first public
2020-12-12
ENA last update
2020-12-11
External Id
SAMEA7706194
INSDC center alias
Max Planck Institute for Marine Microbiology
INSDC center name
Max Planck Institute for Marine Microbiology
INSDC first public
2020-12-12T04:07:45Z
INSDC last update
2020-12-11T19:40:55Z
INSDC status
public
Submitter Id
gfbio:e82c7dd0-6ea6-4a9f-a5f1-e2cc6c942fe5:SOX_BS_3386_Z
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Megahit;1.0.3;max kmer 127, default parameters otherwise
binning parameters
coverage, tetra-nucleotide frequency
binning software
Metabat2, Bandage
broker name
German Federation for Biological Data (GFBio)
collection date
2001-07-19
completeness score
94.53
completeness software
checkm
contamination score
3.31
environment (biome)
Marine hydrothermal vent biome [ENVO:01000030]
environment (feature)
Bathymodiolus gill tissue material [ENVO:01001393]
environment (material)
Bathymodiolus-dominated oceanic mussel reef [ENVO:01001385], Bathymodiolus-dominated oceanic mussel bed [ENVO:01001390]
geographic location (country and/or sea)
Atlantic Ocean
geographic location (depth)
3045, 3065
geographic location (latitude)
29.166667
geographic location (longitude)
-43.166667
investigation type
metagenome-assembled genome
isolation source
Bathymodiolus sp. Tissue
metagenomic source
symbiont metagenome
project name
institutional project
sample derived from
ERS4359956,ERR3959515,ERS4359947,ERR3959506
sample name
gfbio:e82c7dd0-6ea6-4a9f-a5f1-e2cc6c942fe5:SOX_BS_3386_Z
sequencing method
HiSeq 2500, HiSeq 3000
tRNA extraction software
[14]
taxonomic identity marker
45S rRNA gene, gammaproteobacterial marker genes