American Gut Project; 10317.000084393
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104592069
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:36Z
INSDC last update
2018-02-14T18:28:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000084393
acid_reflux
Diagnosed by a medical professional (doctor, physician assistant)
acne medication
false
acne_medication_otc
Unspecified
add_adhd
Unspecified
age cat
60s
age years
66
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Unspecified
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
true
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
Unspecified
anonymized name
000084393
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Never
asd
Unspecified
assigned_from_geo
Yes
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1951
bmi
30.90
bmi_cat
Obese
bmi_corrected
30.90
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Unspecified
cancer treatment
Unspecified
cardiovascular_disease
Unspecified
cat
false
cdiff
Unspecified
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2017-11-15
collection month
November
collection season
Fall
collection time
10:00
collection_timestamp
2017-11-15 10:00
consume_animal_products_abx
Unspecified
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
United States
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Unspecified
diabetes
Unspecified
diabetes type
Unspecified
diet type
Unspecified
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
1
economic_region
Mideast
elevation
302.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Unspecified
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA:NY
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
height cm
162
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2374c25c54306737a5718a04e4cd80b9cd82f6ce1570e2c98492319e960013192e15d46b5290802ebf500cc44eea42498d944d25fdd974b6e11d3946d39882ac
host taxid
9606
ibd
Unspecified
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
Unspecified
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
42.2
level_of_education
Some graduate school or professional
liver_disease
Unspecified
livingwith
No
longitude
-75.9
lowgrain_diet_type
Unspecified
lung disease
Unspecified
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Unspecified
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
Unspecified
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
Yes
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
No
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Yes
pets_other
No
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
Unspecified
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
No
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Unspecified
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000084393
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
No
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Unspecified
sleep_duration
8 or more hours
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Yes
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
Yes
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
Yes
specialized_diet_other_restrictions_not_described_here
Yes
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
NY
subset_age
True
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
False
subset_healthy
False
subset_ibd
False
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
043b60637f8bff4f
teethbrushing_frequency
Daily
thyroid
Unspecified
tonsils_removed
No
types_of_plants
6 to 10
vegetable_frequency
Daily
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Rarely (a few times/month)
weight kg
81
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never