American Gut Project; 10317.000068478
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104591882
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:34Z
INSDC last update
2018-02-14T18:27:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000068478
acid_reflux
I do not have this condition
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Unspecified
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000068478
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Never
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1968
bmi
23.46
bmi_cat
Normal
bmi_corrected
23.46
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Unspecified
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2017-05-22
collection month
May
collection season
Spring
collection time
08:20
collection_timestamp
2017-05-22 08:20
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
United Kingdom
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Unspecified
diabetes
I do not have this condition
diabetes type
Unspecified
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
2-3
economic_region
Unspecified
elevation
Unspecified
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom:Unspecified
gluten
I do not eat gluten because it makes me feel bad
height cm
172
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
2059da97eb264248fdfb450440dee89c022847807e5abb709f9ed36691a3a2c5b1e06f27802ef155c8fefe7fd05679af49b5e3cc25616ed408fcc1b1ae589153
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
Unspecified
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
Unspecified
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
No
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
No
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Yes
pets_other
No
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
No
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Unspecified
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000068478
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Yes
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Yes
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
Yes
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Yes
state
Unspecified
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
aadaf1c5ccb1b686
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
More than 30
vegetable_frequency
Daily
vioscreen_a_bev
Unspecified
vioscreen_a_cal
Unspecified
vioscreen_acesupot
Unspecified
vioscreen_activity_level
Unspecified
vioscreen_add_sug
Unspecified
vioscreen_addsugar
Unspecified
vioscreen_adsugtot
Unspecified
vioscreen_age
Unspecified
vioscreen_alanine
Unspecified
vioscreen_alcohol
Unspecified
vioscreen_alcohol_servings
Unspecified
vioscreen_alphacar
Unspecified
vioscreen_alphtoce
Unspecified
vioscreen_alphtoco
Unspecified
vioscreen_arginine
Unspecified
vioscreen_ash
Unspecified
vioscreen_aspartam
Unspecified
vioscreen_aspartic
Unspecified
vioscreen_avcarb
Unspecified
vioscreen_bcodeid
Unspecified
vioscreen_betacar
Unspecified
vioscreen_betacryp
Unspecified
vioscreen_betaine
Unspecified
vioscreen_betatoco
Unspecified
vioscreen_biochana
Unspecified
vioscreen_bmi
Unspecified
vioscreen_caffeine
Unspecified
vioscreen_calcium
Unspecified
vioscreen_calcium_avg
Unspecified
vioscreen_calcium_dose
Unspecified
vioscreen_calcium_freq
Unspecified
vioscreen_calcium_from_dairy_servings
Unspecified
vioscreen_calcium_servings
Unspecified
vioscreen_calories
Unspecified
vioscreen_carbo
Unspecified
vioscreen_cholest
Unspecified
vioscreen_choline
Unspecified
vioscreen_clac9t11
Unspecified
vioscreen_clat10c12
Unspecified
vioscreen_copper
Unspecified
vioscreen_coumest
Unspecified
vioscreen_cystine
Unspecified
vioscreen_d_cheese
Unspecified
vioscreen_d_milk
Unspecified
vioscreen_d_tot_soym
Unspecified
vioscreen_d_total
Unspecified
vioscreen_d_yogurt
Unspecified
vioscreen_daidzein
Unspecified
vioscreen_database
Unspecified
vioscreen_delttoco
Unspecified
vioscreen_discfat_oil
Unspecified
vioscreen_discfat_sol
Unspecified
vioscreen_dob
Unspecified
vioscreen_eer
Unspecified
vioscreen_email
Unspecified
vioscreen_erythr
Unspecified
vioscreen_f_citmlb
Unspecified
vioscreen_f_nj_citmlb
Unspecified
vioscreen_f_nj_other
Unspecified
vioscreen_f_nj_total
Unspecified
vioscreen_f_other
Unspecified
vioscreen_f_total
Unspecified
vioscreen_fat
Unspecified
vioscreen_fiber
Unspecified
vioscreen_fibh2o
Unspecified
vioscreen_fibinso
Unspecified
vioscreen_finished
Unspecified
vioscreen_fish_servings
Unspecified
vioscreen_fol_deqv
Unspecified
vioscreen_fol_nat
Unspecified
vioscreen_fol_syn
Unspecified
vioscreen_formontn
Unspecified
vioscreen_fried_fish_servings
Unspecified
vioscreen_fried_food_servings
Unspecified
vioscreen_frt5_day
Unspecified
vioscreen_frtsumm
Unspecified
vioscreen_fructose
Unspecified
vioscreen_fruit_servings
Unspecified
vioscreen_g_nwhl
Unspecified
vioscreen_g_total
Unspecified
vioscreen_g_whl
Unspecified
vioscreen_galactos
Unspecified
vioscreen_gammtoco
Unspecified
vioscreen_gender
Unspecified
vioscreen_genistn
Unspecified
vioscreen_glac
Unspecified
vioscreen_gltc
Unspecified
vioscreen_glucose
Unspecified
vioscreen_glutamic
Unspecified
vioscreen_glycine
Unspecified
vioscreen_glycitn
Unspecified
vioscreen_grams
Unspecified
vioscreen_hei2010_dairy
Unspecified
vioscreen_hei2010_empty_calories
Unspecified
vioscreen_hei2010_fatty_acids
Unspecified
vioscreen_hei2010_fruit
Unspecified
vioscreen_hei2010_greens_beans
Unspecified
vioscreen_hei2010_protien_foods
Unspecified
vioscreen_hei2010_refined_grains
Unspecified
vioscreen_hei2010_score
Unspecified
vioscreen_hei2010_sea_foods_plant_protiens
Unspecified
vioscreen_hei2010_sodium
Unspecified
vioscreen_hei2010_veg
Unspecified
vioscreen_hei2010_whole_fruit
Unspecified
vioscreen_hei2010_whole_grains
Unspecified
vioscreen_hei_drk_g_org_veg_leg
Unspecified
vioscreen_hei_fruit
Unspecified
vioscreen_hei_grains
Unspecified
vioscreen_hei_meat_beans
Unspecified
vioscreen_hei_milk
Unspecified
vioscreen_hei_non_juice_frt
Unspecified
vioscreen_hei_oils
Unspecified
vioscreen_hei_sat_fat
Unspecified
vioscreen_hei_score
Unspecified
vioscreen_hei_sodium
Unspecified
vioscreen_hei_sol_fat_alc_add_sug
Unspecified
vioscreen_hei_veg
Unspecified
vioscreen_hei_whl_grains
Unspecified
vioscreen_height
Unspecified
vioscreen_histidin
Unspecified
vioscreen_inositol
Unspecified
vioscreen_iron
Unspecified
vioscreen_isoleuc
Unspecified
vioscreen_isomalt
Unspecified
vioscreen_joules
Unspecified
vioscreen_juice_servings
Unspecified
vioscreen_lactitol
Unspecified
vioscreen_lactose
Unspecified
vioscreen_legumes
Unspecified
vioscreen_leucine
Unspecified
vioscreen_line_gi
Unspecified
vioscreen_low_fat_dairy_serving
Unspecified
vioscreen_lutzeax
Unspecified
vioscreen_lycopene
Unspecified
vioscreen_lysine
Unspecified
vioscreen_m_egg
Unspecified
vioscreen_m_fish_hi
Unspecified
vioscreen_m_fish_lo
Unspecified
vioscreen_m_frank
Unspecified
vioscreen_m_meat
Unspecified
vioscreen_m_mpf
Unspecified
vioscreen_m_nutsd
Unspecified
vioscreen_m_organ
Unspecified
vioscreen_m_poult
Unspecified
vioscreen_m_soy
Unspecified
vioscreen_magnes
Unspecified
vioscreen_maltitol
Unspecified
vioscreen_maltose
Unspecified
vioscreen_mangan
Unspecified
vioscreen_mannitol
Unspecified
vioscreen_methhis3
Unspecified
vioscreen_methion
Unspecified
vioscreen_mfa141
Unspecified
vioscreen_mfa161
Unspecified
vioscreen_mfa181
Unspecified
vioscreen_mfa201
Unspecified
vioscreen_mfa221
Unspecified
vioscreen_mfatot
Unspecified
vioscreen_multi_calcium_avg
Unspecified
vioscreen_multi_calcium_dose
Unspecified
vioscreen_multivitamin
Unspecified
vioscreen_multivitamin_freq
Unspecified
vioscreen_natoco
Unspecified
vioscreen_nccglbr
Unspecified
vioscreen_nccglgr
Unspecified
vioscreen_niacin
Unspecified
vioscreen_niacineq
Unspecified
vioscreen_nitrogen
Unspecified
vioscreen_non_fried_fish_servings
Unspecified
vioscreen_nutrient_recommendation
Unspecified
vioscreen_omega3
Unspecified
vioscreen_oxalic
Unspecified
vioscreen_oxalicm
Unspecified
vioscreen_pantothe
Unspecified
vioscreen_pectins
Unspecified
vioscreen_pfa182
Unspecified
vioscreen_pfa183
Unspecified
vioscreen_pfa184
Unspecified
vioscreen_pfa204
Unspecified
vioscreen_pfa205
Unspecified
vioscreen_pfa225
Unspecified
vioscreen_pfa226
Unspecified
vioscreen_pfatot
Unspecified
vioscreen_phenylal
Unspecified
vioscreen_phosphor
Unspecified
vioscreen_phytic
Unspecified
vioscreen_pinitol
Unspecified
vioscreen_potass
Unspecified
vioscreen_procdate
Unspecified
vioscreen_proline
Unspecified
vioscreen_protanim
Unspecified
vioscreen_protein
Unspecified
vioscreen_protocol
Unspecified
vioscreen_protveg
Unspecified
vioscreen_questionnaire
Unspecified
vioscreen_recno
Unspecified
vioscreen_retinol
Unspecified
vioscreen_rgrain
Unspecified
vioscreen_ribofla
Unspecified
vioscreen_sacchar
Unspecified
vioscreen_salad_vegetable_servings
Unspecified
vioscreen_satoco
Unspecified
vioscreen_scf
Unspecified
vioscreen_scfv
Unspecified
vioscreen_selenium
Unspecified
vioscreen_serine
Unspecified
vioscreen_sfa100
Unspecified
vioscreen_sfa120
Unspecified
vioscreen_sfa140
Unspecified
vioscreen_sfa160
Unspecified
vioscreen_sfa170
Unspecified
vioscreen_sfa180
Unspecified
vioscreen_sfa200
Unspecified
vioscreen_sfa220
Unspecified
vioscreen_sfa40
Unspecified
vioscreen_sfa60
Unspecified
vioscreen_sfa80
Unspecified
vioscreen_sfatot
Unspecified
vioscreen_sodium
Unspecified
vioscreen_sorbitol
Unspecified
vioscreen_srvid
Unspecified
vioscreen_starch
Unspecified
vioscreen_started
Unspecified
vioscreen_subject_id
Unspecified
vioscreen_sucpoly
Unspecified
vioscreen_sucrlose
Unspecified
vioscreen_sucrose
Unspecified
vioscreen_sweet_servings
Unspecified
vioscreen_tagatose
Unspecified
vioscreen_tfa161t
Unspecified
vioscreen_tfa181t
Unspecified
vioscreen_tfa182t
Unspecified
vioscreen_tgrain
Unspecified
vioscreen_thiamin
Unspecified
vioscreen_threonin
Unspecified
vioscreen_time
Unspecified
vioscreen_totaltfa
Unspecified
vioscreen_totcla
Unspecified
vioscreen_totfolat
Unspecified
vioscreen_totsugar
Unspecified
vioscreen_tryptoph
Unspecified
vioscreen_tyrosine
Unspecified
vioscreen_user_id
Unspecified
vioscreen_v_drkgr
Unspecified
vioscreen_v_orange
Unspecified
vioscreen_v_other
Unspecified
vioscreen_v_potato
Unspecified
vioscreen_v_starcy
Unspecified
vioscreen_v_tomato
Unspecified
vioscreen_v_total
Unspecified
vioscreen_valine
Unspecified
vioscreen_veg5_day
Unspecified
vioscreen_vegetable_servings
Unspecified
vioscreen_vegsumm
Unspecified
vioscreen_visit
Unspecified
vioscreen_vita_iu
Unspecified
vioscreen_vita_rae
Unspecified
vioscreen_vita_re
Unspecified
vioscreen_vitb12
Unspecified
vioscreen_vitb6
Unspecified
vioscreen_vitc
Unspecified
vioscreen_vitd
Unspecified
vioscreen_vitd2
Unspecified
vioscreen_vitd3
Unspecified
vioscreen_vitd_iu
Unspecified
vioscreen_vite_iu
Unspecified
vioscreen_vitk
Unspecified
vioscreen_water
Unspecified
vioscreen_weight
Unspecified
vioscreen_wgrain
Unspecified
vioscreen_whole_grain_servings
Unspecified
vioscreen_xylitol
Unspecified
vioscreen_zinc
Unspecified
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Occasionally (1-2 times/week)
weight kg
70
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)