American Gut Project; 11710.10317.000071613
human gut metagenome
ENA-FIRST-PUBLIC
2018-04-13T17:03:22Z
ENA-LAST-UPDATE
2018-04-13T04:30:23Z
External Id
SAMEA3469252
INSDC center name
UCSDMI
INSDC first public
2018-04-13T17:03:22Z
INSDC last update
2018-04-13T04:30:23Z
INSDC status
public
Submitter Id
qiita_sid_11710:11710.10317.000071613
acid_reflux
I do not have this condition
acne medication
No
acne_medication_otc
No
add_adhd
I do not have this condition
age cat
30s
age units
years
age_corrected
38.0
alcohol consumption
No
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic to i have no food allergies that i know of
Yes
allergic_to
Unspecified
allergic_to_other
No
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
altitude
NaN
alzheimers
I do not have this condition
anonymized name
000071613
antibiotic_history
Year
antibiotic_pastyear
1
antipsychotic_medication
yes
anxiety_score
0.00
appendix_removed
No
artificial_sweeteners
Never
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1979
bmi
33.45
bmi_cat
Obese
bmi_corrected
33.45
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
No
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
No
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
I do not have this condition
cognitive_failures_score
0.00
collection date
2017-09-27
collection month
September
collection season
Fall
collection time
15:20
collection_timestamp
09/27/2017 15:20
comments_renamed
NaN
condition_renamed
NaN
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
United States
csection
No
current_smoker
yes
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Unspecified
depression_calgary_score
0
depression_cesd10_score
1
depression_diagnosis_phq9
0
depth
NaN
diabetes
I do not have this condition
diabetes type
Unspecified
diagnosis
SZ
diet type
Omnivore
dna_extracted
TRUE
dog
No
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
I don't drink
economic_region
Far West
elevation
62.3
empo_1
Host-asssociated
empo_2
Animal
empo_3
Animal distal gut
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:CA
gluten
No
happiness_cesd_score
8.0
height cm
165
height unit
centimeters
height_corrected
NaN
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host age
38.0
host body habitat
UBERON:feces
host body mass index
33.45
host body product
UBERON:feces
host body site
UBERON:feces
host common name
human
host height
165
host scientific name
Homo sapiens
host subject id
b2ed5198864223ff4deb396048ad046c814d2ea0b6b1200f16c66430b5d8576b532a3a930847fc8a313a0cf62d4ffc9378a0a93c7a50441a342d22fafbaf7da0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
ipq_category
3.000000
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
level_of_education
Did not complete high school
liver_disease
I do not have this condition
livingwith
Yes
longitude
-117.1
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
matched_case
1
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Yes
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
Yes
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
No
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
No
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Never
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
No
packs_cigarettes_day
0.2
pets_other
No
phq9_score
0
physical_specimen_location
UCSDMI
physical_specimen_remaining
TRUE
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
No
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
TRUE
race
African American
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
resilience_score
26.00
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_11710:11710.10317.000071613
sample type
Stool
schizophrenia_case
4
scientific_name
human gut metagenome
seafood_frequency
Never
seasonal_allergies
No
sex
female
sf36_mental_component_scale
53.05
sf36_physical_component_scale
58.62
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Daily
softener
Yes
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
Yes
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
No
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
CA
stein_project
Schizo & Aging
subset_age
True
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
80899f81cfe34017
sz_diagnosis
SZ
sz_diagnosis_corr
SZ
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
Less than 5
vegetable_frequency
Regularly (3-5 times/week)
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Never
weight kg
91
weight_change
Remained stable
weight_corrected
NaN
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)
years_smoker
15.0