American Gut Project; 10317.000071434
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104591909
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:34Z
INSDC last update
2018-02-14T18:27:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000071434
acid_reflux
Unspecified
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Unspecified
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000071434
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Unspecified
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1973
bmi
17.64
bmi_cat
Underweight
bmi_corrected
17.64
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool) - Type 5, 6 and 7
breastmilk_formula_ensure
false
cancer
Unspecified
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2017-11-29
collection month
November
collection season
Fall
collection time
20:55
collection_timestamp
2017-11-29 20:55
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
Iran, Islamic Republic of
country_residence
Unspecified
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Unspecified
economic_region
Far West
elevation
40.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA:CA
gluten
No
height cm
165
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
313057beee40cea4b7378e6fd2be8c715c3b5034f008acf8d3408be0c88e90073c0939f0bc75afae45bbfd899c0cbd1ad8a60b91fc29d0143fcec6632985c47f
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
Yes
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.5
lowgrain_diet_type
Yes
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Unspecified
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
Unspecified
mental_illness_type_bipolar_disorder
Unspecified
mental_illness_type_bulimia_nervosa
Unspecified
mental_illness_type_depression
Unspecified
mental_illness_type_ptsd_posttraumatic_stress_disorder
Unspecified
mental_illness_type_schizophrenia
Unspecified
mental_illness_type_substance_abuse
Unspecified
mental_illness_type_unspecified
Unspecified
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
No
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
Yes
pets_other
Unspecified
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
No
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
Yes
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000071434
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
No
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by an alternative medicine practitioner
sleep_duration
8 or more hours
smoking_frequency
Regularly (3-5 times/week)
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Unspecified
specialized_diet_exclude_nightshades
Unspecified
specialized_diet_exclude_refined_sugars
Unspecified
specialized_diet_fodmap
Unspecified
specialized_diet_halaal
Unspecified
specialized_diet_i_do_not_eat_a_specialized_diet
Unspecified
specialized_diet_kosher
Unspecified
specialized_diet_modified_paleo_diet
Unspecified
specialized_diet_other_restrictions_not_described_here
Unspecified
specialized_diet_paleodiet_or_primal_diet
Unspecified
specialized_diet_raw_food_diet
Unspecified
specialized_diet_unspecified
Unspecified
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Unspecified
state
CA
subset_age
True
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
True
subset_healthy
False
subset_ibd
False
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
9d9eaea8f994387a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
Unspecified
vegetable_frequency
Regularly (3-5 times/week)
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Unspecified
weight kg
48
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)