American Gut Project; 10317.000089216
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104592121
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:37Z
INSDC last update
2018-02-14T18:28:18Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000089216
acid_reflux
Unspecified
acne medication
Unspecified
acne_medication_otc
Unspecified
add_adhd
Unspecified
age cat
Unspecified
age years
Unspecified
age_corrected
Unspecified
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Unspecified
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
Unspecified
anonymized name
000089216
antibiotic_history
Unspecified
appendix_removed
Unspecified
artificial_sweeteners
Never
asd
Unspecified
assigned_from_geo
Yes
autoimmune
Unspecified
birth year
Unspecified
bmi
Unspecified
bmi_cat
Unspecified
bmi_corrected
Unspecified
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
Unspecified
cancer
Unspecified
cancer treatment
Unspecified
cardiovascular_disease
Unspecified
cat
Unspecified
cdiff
Unspecified
census_region
Unspecified
chickenpox
No
clinical condition
Unspecified
collection date
2017-12-29
collection month
December
collection season
Winter
collection time
14:35
collection_timestamp
2017-12-29 14:35
consume_animal_products_abx
Yes
contraceptive
Unspecified
cosmetics_frequency
Unspecified
country
USA
country of birth
United States
country_residence
United States
csection
Unspecified
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Unspecified
diabetes
Unspecified
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
true
dog
Unspecified
dominant hand
Unspecified
drinking_water_source
Bottled
drinks_per_session
Unspecified
economic_region
Unspecified
elevation
Unspecified
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Unspecified
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Unspecified
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
Unspecified
geo loc name
USA:Unspecified
gluten
Unspecified
height cm
172
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
f34b3ed9415e83499b5da44254c6992af993ae742006f9d687c8536c9906d6df5fdd243705ce8aefc05a43e407679725da335233409834a41a150b20cd605f2c
host taxid
9606
ibd
Unspecified
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
Unspecified
kidney_disease
Unspecified
lactose
Unspecified
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
Unspecified
level_of_education
Unspecified
liver_disease
Unspecified
livingwith
Unspecified
longitude
Unspecified
lowgrain_diet_type
Unspecified
lung disease
Unspecified
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Unspecified
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
Unspecified
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
No
nail_biter
Unspecified
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Unspecified
pets_other
Unspecified
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
Unspecified
pool_frequency
Unspecified
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Unspecified
prepared_meals_frequency
Unspecified
probiotic_frequency
Occasionally (1-2 times/week)
public
Yes
race
African American
ready_to_eat_meals_frequency
Unspecified
red_meat_frequency
Unspecified
roommates_in_study
Unspecified
salted_snacks_frequency
Unspecified
sample name
qiita_sid_10317:10317.000089216
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Unspecified
sex
female
sibo
Unspecified
skin_condition
Unspecified
sleep_duration
Unspecified
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
Yes
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
Unspecified
subset_age
False
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
False
subset_healthy
False
subset_ibd
False
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
130932ecca735c82
teethbrushing_frequency
Daily
thyroid
Unspecified
tonsils_removed
Unspecified
types_of_plants
Less than 5
vegetable_frequency
Unspecified
vitamin_b_supplement_frequency
Unspecified
vitamin_d_supplement_frequency
Unspecified
vivid_dreams
Unspecified
weight kg
Unspecified
weight_change
Unspecified
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Unspecified