American Gut Project; 11710.10317.000071971
human gut metagenome
ENA-FIRST-PUBLIC
2018-04-13T17:03:22Z
ENA-LAST-UPDATE
2018-04-13T04:30:23Z
External Id
SAMEA3469254
INSDC center name
UCSDMI
INSDC first public
2018-04-13T17:03:22Z
INSDC last update
2018-04-13T04:30:23Z
INSDC status
public
Submitter Id
qiita_sid_11710:11710.10317.000071971
acid_reflux
I do not have this condition
acne medication
No
acne_medication_otc
No
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
40s
age units
years
age_corrected
43.0
alcohol consumption
Yes
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Unspecified
alcohol_types_beercider
Yes
alcohol_types_red_wine
Yes
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
Yes
alcohol_types_unspecified
No
alcohol_types_white_wine
Yes
allergic to i have no food allergies that i know of
Yes
allergic_to
Unspecified
allergic_to_other
No
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
altitude
NaN
alzheimers
I do not have this condition
anonymized name
000071971
antibiotic_history
I have not taken antibiotics in the past year.
antibiotic_pastyear
0
appendix_removed
No
artificial_sweeteners
Never
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1973
bmi
26.31
bmi_cat
Overweight
bmi_corrected
26.31
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
No
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
No
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2017-08-14
collection month
August
collection season
Summer
collection time
13:00
collection_timestamp
08/14/2017 13:00
comments_renamed
NaN
condition_renamed
NaN
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Australia
country_residence
United States
csection
No
current_smoker
no
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Unspecified
depth
NaN
diabetes
I do not have this condition
diabetes type
Unspecified
diagnosis
HC
diet type
Omnivore
dna_extracted
TRUE
dog
No
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
2-3
economic_region
Mideast
elevation
24.9
empo_1
Host-asssociated
empo_2
Animal
empo_3
Animal distal gut
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:NY
gluten
No
height cm
187
height unit
centimeters
height_corrected
NaN
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Rarely (less than once/week)
host age
43.0
host body habitat
UBERON:feces
host body mass index
26.31
host body product
UBERON:feces
host body site
UBERON:feces
host common name
human
host height
187
host scientific name
Homo sapiens
host subject id
4335dd1146b56f39b6a3ebff5b5db25f2d99ee7c5df7e0b2464a948f3e7f40a09c7f55fee14556c4c0a78c5af4174d6000386ab168246b6d135256cdbd550739
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
ipq_category
not provided
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
Unspecified
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
matched_case
9
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
No
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
No
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
No
packs_cigarettes_day
not provided
pets_other
No
physical_specimen_location
UCSDMI
physical_specimen_remaining
TRUE
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
No
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
TRUE
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_11710:11710.10317.000071971
sample type
Stool
schizophrenia_case
233
scientific_name
human gut metagenome
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Yes
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
No
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
Yes
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
NY
stein_project
American Gut
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
c8d3dd908c83bfec
sz_diagnosis
not provided
sz_diagnosis_corr
HC
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
6 to 10
vegetable_frequency
Regularly (3-5 times/week)
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Never
weight kg
92
weight_change
Remained stable
weight_corrected
NaN
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)
years_smoker
not provided