American Gut Project; 10317.000001542
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104591744
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:31Z
INSDC last update
2018-02-14T18:26:51Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000001542
acid_reflux
Unspecified
acne medication
false
acne_medication_otc
false
add_adhd
Unspecified
age cat
40s
age years
43
age_corrected
43.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Unspecified
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
Unspecified
anonymized name
000001542
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Unspecified
asd
Unspecified
assigned_from_geo
Yes
autoimmune
Unspecified
birth year
1970
bmi
23.14
bmi_cat
Normal
bmi_corrected
23.14
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Unspecified
bowel_movement_quality
Unspecified
breastmilk_formula_ensure
Unspecified
cancer
Unspecified
cancer treatment
Unspecified
cardiovascular_disease
Unspecified
cat
false
cdiff
Unspecified
census_region
West
chickenpox
Unspecified
clinical condition
Unspecified
collection date
05/07/2013
collection month
May
collection season
Spring
collection time
16:35
collection_timestamp
2013-05-07 16:35
consume_animal_products_abx
Unspecified
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Unspecified
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Unspecified
diabetes
I do not have this condition
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
Unspecified
drinking_water_source
City
drinks_per_session
Unspecified
economic_region
Rocky Mountain
elevation
1619.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Unspecified
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Unspecified
fermented_plant_frequency
Unspecified
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Unspecified
fruit_frequency
Unspecified
fungal_overgrowth
Unspecified
geo loc name
USA:CO
gluten
No
height cm
165
height_units
centimeters
high_fat_red_meat_frequency
Unspecified
homecooked_meals_frequency
Unspecified
host common name
human
host subject id
87e16cddbb0a93efea155a71eb3b61e1a0a832658a6156bfab49b20e507e6a23d3d21f5e6d55dd916b8c657b1bce8b2ae4a0762145d12e31b1a88e00b6163b3e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
Unspecified
kidney_disease
Unspecified
lactose
No
last_move
Unspecified
last_travel
1 year
latitude
40.0
level_of_education
Unspecified
liver_disease
Unspecified
livingwith
No
longitude
-105.2
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
meat_eggs_frequency
Unspecified
mental_illness
Unspecified
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
Unspecified
mental_illness_type_bipolar_disorder
Unspecified
mental_illness_type_bulimia_nervosa
Unspecified
mental_illness_type_depression
Unspecified
mental_illness_type_ptsd_posttraumatic_stress_disorder
Unspecified
mental_illness_type_schizophrenia
Unspecified
mental_illness_type_substance_abuse
Unspecified
mental_illness_type_unspecified
Unspecified
migraine
I do not have this condition
milk_cheese_frequency
Unspecified
milk_substitute_frequency
Unspecified
multivitamin
No
nail_biter
Yes
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Unspecified
one_liter_of_water_a_day_frequency
Unspecified
other_supplement_frequency
No
pets_other
Unspecified
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Unspecified
pregnant
No
prepared_meals_frequency
Unspecified
probiotic_frequency
Unspecified
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Unspecified
red_meat_frequency
Unspecified
roommates
One
roommates_in_study
Unspecified
salted_snacks_frequency
Unspecified
sample name
qiita_sid_10317:10317.000001542
sample type
Stool
seafood_frequency
Unspecified
seasonal_allergies
Unspecified
sex
female
sibo
Unspecified
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Unspecified
specialized_diet_exclude_nightshades
Unspecified
specialized_diet_exclude_refined_sugars
Unspecified
specialized_diet_fodmap
Unspecified
specialized_diet_halaal
Unspecified
specialized_diet_i_do_not_eat_a_specialized_diet
Unspecified
specialized_diet_kosher
Unspecified
specialized_diet_modified_paleo_diet
Unspecified
specialized_diet_other_restrictions_not_described_here
Unspecified
specialized_diet_paleodiet_or_primal_diet
Unspecified
specialized_diet_raw_food_diet
Unspecified
specialized_diet_unspecified
Unspecified
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Unspecified
state
CO
subset_age
True
subset_antibiotic_history
False
subset_bmi
True
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Unspecified
sugary_sweets_frequency
Unspecified
survey_id
7efeb86b2bd40df6
teethbrushing_frequency
Daily
thyroid
Unspecified
tonsils_removed
No
types_of_plants
6 to 10
vegetable_frequency
Unspecified
vitamin_b_supplement_frequency
Unspecified
vitamin_d_supplement_frequency
Unspecified
vivid_dreams
Unspecified
weight kg
63
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Unspecified
whole_grain_frequency
Unspecified