American Gut Project; 10317.000051110
human gut metagenome
ENA first public
2018-02-15
ENA last update
2018-02-14
External Id
SAMEA104591788
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2018-02-15T17:08:32Z
INSDC last update
2018-02-14T18:27:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000051110
acid_reflux
Diagnosed by a medical professional (doctor, physician assistant)
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Unspecified
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000051110
antibiotic_history
Year
appendix_removed
true
artificial_sweeteners
Occasionally (1-2 times/week)
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1950
bmi
29.45
bmi_cat
Overweight
bmi_corrected
29.45
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
05/07/2013
collection month
May
collection season
Spring
collection time
16:35
collection_timestamp
2013-05-07 16:35
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
United States
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Unspecified
diabetes
I do not have this condition
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Unspecified
economic_region
Great Lakes
elevation
196.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:OH
gluten
No
height cm
157
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
ebe2de387d1008ce9f0c27595842cbf25c47715b927965cc6bf385ed98cc1abb591784e8f1538bc466d790b1d81bee70682f00ee055fbd2bdc19c634386a536c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.7
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-81.3
lowgrain_diet_type
No
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
No
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
Yes
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
Yes
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
Yes
non_food_allergies_sun
No
non_food_allergies_unspecified
No
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
Yes
pets_other
No
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
No
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000051110
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
No
sex
other
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
Yes
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Unspecified
specialized_diet_exclude_nightshades
Unspecified
specialized_diet_exclude_refined_sugars
Unspecified
specialized_diet_fodmap
Unspecified
specialized_diet_halaal
Unspecified
specialized_diet_i_do_not_eat_a_specialized_diet
Unspecified
specialized_diet_kosher
Unspecified
specialized_diet_modified_paleo_diet
Unspecified
specialized_diet_other_restrictions_not_described_here
Unspecified
specialized_diet_paleodiet_or_primal_diet
Unspecified
specialized_diet_raw_food_diet
Unspecified
specialized_diet_unspecified
Unspecified
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Unspecified
state
OH
subset_age
True
subset_antibiotic_history
False
subset_bmi
True
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Daily
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
cdb4f210e1fcfdfb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Yes
types_of_plants
6 to 10
vegetable_frequency
Occasionally (1-2 times/week)
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Regularly (3-5 times/week)
weight kg
73
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)