American Gut Project; 11710.10317.000084678
human gut metagenome
ENA-FIRST-PUBLIC
2018-04-13T17:03:22Z
ENA-LAST-UPDATE
2018-04-13T04:30:25Z
External Id
SAMEA3469509
INSDC center name
UCSDMI
INSDC first public
2018-04-13T17:03:22Z
INSDC last update
2018-04-13T04:30:25Z
INSDC status
public
Submitter Id
qiita_sid_11710:11710.10317.000084678
acid_reflux
Diagnosed by a medical professional (doctor, physician assistant)
acne medication
No
acne_medication_otc
Yes
add_adhd
I do not have this condition
age cat
40s
age units
years
age_corrected
48.0
alcohol consumption
No
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic to i have no food allergies that i know of
No
allergic_to
Unspecified
allergic_to_other
Yes
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
altitude
NaN
alzheimers
I do not have this condition
anonymized name
000084678
antibiotic_history
Year
antibiotic_pastyear
1
antipsychotic_medication
yes
anxiety_score
12.00
appendix_removed
No
artificial_sweeteners
Daily
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1969
bmi
28.35
bmi_cat
Overweight
bmi_corrected
28.35
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool) - Type 1 and 2
breastmilk_formula_ensure
No
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
No
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Self-diagnosed
cognitive_failures_score
55.00
collection date
11/03/2017
collection month
November
collection season
Fall
collection time
04:25
collection_timestamp
11/03/2017 04:25
comments_renamed
NaN
condition_renamed
NaN
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
United States
csection
No
current_smoker
yes
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Unspecified
depression_calgary_score
2
depression_cesd10_score
11
depression_diagnosis_phq9
0
depth
NaN
diabetes
I do not have this condition
diabetes type
Unspecified
diagnosis
SZ
diet type
Omnivore
dna_extracted
TRUE
dog
No
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
I don't drink
economic_region
Far West
elevation
46.9
empo_1
Host-asssociated
empo_2
Animal
empo_3
Animal distal gut
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Month
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:CA
gluten
No
happiness_cesd_score
4.0
height cm
157
height unit
centimeters
height_corrected
NaN
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host age
48.0
host body habitat
UBERON:feces
host body mass index
28.35
host body product
UBERON:feces
host body site
UBERON:feces
host common name
human
host height
157
host scientific name
Homo sapiens
host subject id
1f703e16eeb04c69e3d3a91f9346c832c41d0ee80295f3546891fd3665e690bf373ecca969026e7bebdfc584fca6c2126b46b0947de3ce076d209f4bf9ad7906
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
ipq_category
3.000000
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.2
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
matched_case
92
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Yes
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
Yes
mental_illness_type_bipolar_disorder
Yes
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
Yes
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
No
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
Yes
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
Yes
non_food_allergies_sun
No
non_food_allergies_unspecified
No
olive_oil
Never
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
Yes
packs_cigarettes_day
0.5
pets_other
No
phq9_score
8
physical_specimen_location
UCSDMI
physical_specimen_remaining
TRUE
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
No
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
TRUE
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
resilience_score
30.00
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_11710:11710.10317.000084678
sample type
Stool
schizophrenia_case
158
scientific_name
human gut metagenome
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
No
sex
female
sf36_mental_component_scale
36.07
sf36_physical_component_scale
39.27
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Rarely (a few times/month)
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
No
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
Yes
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
CA
stein_project
Schizo & Aging
subset_age
True
subset_antibiotic_history
False
subset_bmi
True
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Daily
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
21a2b548c5a34a2a
sz_diagnosis
SZ
sz_diagnosis_corr
SZ
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
Less than 5
vegetable_frequency
Occasionally (1-2 times/week)
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Rarely (a few times/month)
weight kg
70
weight_change
Remained stable
weight_corrected
NaN
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)
years_smoker
30.0