American Gut Project; 11710.10317.000085082
human gut metagenome
ENA-FIRST-PUBLIC
2018-04-13T17:03:22Z
ENA-LAST-UPDATE
2018-04-13T04:30:25Z
External Id
SAMEA3469511
INSDC center name
UCSDMI
INSDC first public
2018-04-13T17:03:22Z
INSDC last update
2018-04-13T04:30:25Z
INSDC status
public
Submitter Id
qiita_sid_11710:11710.10317.000085082
acid_reflux
I do not have this condition
acne medication
No
acne_medication_otc
No
add_adhd
I do not have this condition
age cat
60s
age units
years
age_corrected
63.0
alcohol consumption
No
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic to i have no food allergies that i know of
Yes
allergic_to
Unspecified
allergic_to_other
No
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
altitude
NaN
alzheimers
I do not have this condition
anonymized name
000085082
antibiotic_history
I have not taken antibiotics in the past year.
antibiotic_pastyear
0
antipsychotic_medication
no
anxiety_score
14.00
appendix_removed
No
artificial_sweeteners
Rarely (a few times/month)
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1954
bmi
24.39
bmi_cat
Normal
bmi_corrected
24.39
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
No
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
No
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
cognitive_failures_score
62.00
collection date
11/05/2017
collection month
November
collection season
Fall
collection time
14:15
collection_timestamp
11/05/2017 14:15
comments_renamed
NaN
condition_renamed
NaN
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
United States
csection
No
current_smoker
no
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Unspecified
depression_calgary_score
4
depression_cesd10_score
13
depression_diagnosis_phq9
0
depth
NaN
diabetes
I do not have this condition
diabetes type
Unspecified
diagnosis
SZ
diet type
Vegetarian
dna_extracted
TRUE
dog
No
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
I don't drink
economic_region
Far West
elevation
92.7
empo_1
Host-asssociated
empo_2
Animal
empo_3
Animal distal gut
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA:CA
gluten
No
happiness_cesd_score
8.0
height cm
187
height unit
centimeters
height_corrected
NaN
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host age
63.0
host body habitat
UBERON:feces
host body mass index
24.39
host body product
UBERON:feces
host body site
UBERON:feces
host common name
human
host height
187
host scientific name
Homo sapiens
host subject id
a04f3fe129c61e62c37deb5433fbcde3095b6c573ea73e1cd930d7a38c80c89bd4d38b392e4319ca15af7903304cba51ccbd5ba2420b5a9f830408c5e6577656
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
ipq_category
3.000000
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-117.1
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
matched_case
21
meat_eggs_frequency
Never
mental_illness
Yes
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
Yes
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
No
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
No
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Yes
packs_cigarettes_day
0.0
pets_other
Yes
phq9_score
12
physical_specimen_location
UCSDMI
physical_specimen_remaining
TRUE
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
No
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
TRUE
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
resilience_score
27.00
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_11710:11710.10317.000085082
sample type
Stool
schizophrenia_case
160
scientific_name
human gut metagenome
seafood_frequency
Never
seasonal_allergies
No
sex
male
sf36_mental_component_scale
22.23
sf36_physical_component_scale
33.95
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
Yes
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
No
specialized_diet_other_restrictions_not_described_here
No
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
Yes
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
CA
stein_project
Schizo & Aging
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a89146acaf05558a
sz_diagnosis
SZ
sz_diagnosis_corr
SZ
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
No
types_of_plants
6 to 10
vegetable_frequency
Daily
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Never
weight kg
86
weight_change
Remained stable
weight_corrected
NaN
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily
years_smoker
2.0