seq.run4
human metagenome
Collection of functionally non-susceptible inserts (labelled with barcodes) received from nasal swabs from infants with CF.Samples are labelled as followed: Barcode number (BC##) - Infant ID-sample ID- Antibiotic used for functional screening - (optional: gene identified in insert). BC1-2001-7-Cef-class.C/aromatic.amino.acid.transporter; BC2-2001-11-Cef-; BC3-2001-14-Cef-B1.metallo-beta-lactamase; BC4-2001-14-Amc-; BC5-2003-8-Cef-; BC6-2004-13-Cef-; BC7-2005-9-Amc-ACT-type/OXA-286-like; BC8-2005-9-Cef-; BC9-2007-4-Cef-class.C; BC10-2007-24-Cef-BRO-type; BC11-2008-12-Amc-; BC12-2008-12-Cef-; BC13-2009-20-Cef-; BC14-2011-11-Cef-; BC15-2011-12-Cef-; BC16-2011-14-Cef-CIA-type; BC17-2011-14-Amc-OXA-type.class.D; BC18-2013-8-Cef-; BC19-2014-2-Cef-; BC20-2014-10-Cef-; BC21-2016-7-Amc-; BC22-2017-6-Cef-; BC23-2021-4-Cef-class.C; BC24-2021-12-Cef-class.C; BC25-2021-12-Amc-OXA-type; BC26-2021-15-Cef-non-described.protein; BC27-2021-15-Amc-OXA-286-like; BC28-2024-5-Cef-; BC29-2025-2-Amc-; BC30-2025-3-Cef-; BC31-2025-7-Cef-; BC32-2025-7-Amc-MFS.transporter; BC33-2025-7-Cef-IND.B1.metallo-beta-lactamase; BC34-2025-9-Amc-; BC35-2025-13-Cef-BRO-type; BC36-2026-5-Cef-; BC37-2027-4-Amc-; BC38-2027-10-Cef-BRO-type; BC39-2028-13-Amc-bla_TEM-type; BC48-2031-3-Amp-; BC49-2031-3-Amc-; BC50-2031-7-Amp-; BC51-2031-7-Amc-; BC52-2002-5-Amp-non-described.protein; BC53-2005-11-Amp-BRO-type; BC54-2005-11-Amp-; BC55-2008-15-Amp-; BC56-2019-15-Amp-; BC57-2008-10-SMX-; BC58-2006-18-Cef-; BC59-2008-4-Cef-MDR.efflux.pump.AcrAB.transcriptional.activator.RobA; BC60-2027-10-amp-Bcr/CflA.-.MSF.transporter.(Orchobactrum); BC61-2025-9-Tet-; BC62-2008-12-SMX-; BC63-negative.control-; BC64-CMY-2.positive.control-Amc-;
ENA first public
2018-04-20
ENA last update
2018-01-18
External Id
SAMEA104483598
INSDC center alias
IFIK
INSDC center name
Institute for Infectious Diseases of the University of Bern, Switzerland
INSDC first public
2018-04-20T17:03:21Z
INSDC last update
2018-01-18T12:33:34Z
INSDC status
public
Submitter Id
seq.run4
sample name
seq.run4