ScRNAseq of mouse tracheal cells in a regeneration time course following polidocanol induced injury
Mus musculus
Associated fastq files are from 4 NextSeq 500 runs and contain reads from a pool of multiple single cell libraries from multiple mice. These files are the exact input for the custom indrops.py pipeline (github/indrops) used in the paper (Wingert et al.; see Methods). There is no pre-demultiplexing step using the indrops.py pipeline. Instead, read filtering for expected structure and demultiplexing is performed read-by-read.
strain
C57BL/6
age
6-8 weeks
sex
female
tissue
trachea
biomaterial_provider
Jackson Laboratory
genotype
WT
sample_type
polyA RNA
BioSampleModel
Model organism or animal