MIMARKS Survey sample for Glomeromycota environmental sample from dry seasonal tropical forests, Mexico: TO2013B
soil metagenome
Arbuscular mycorrhizal fungal (AMF) ribosomal small subunit (SSU) sequence fragments generated using Illumina-adapted primers NS31 and AML2. Sequences have been quality filtered, clustered into OTUs, and all OTUs with fewer than 10 constituent sequences or without a blast hit of e < 10e-50 or better against the MaarjAM database of AMF SSU sequences excluded. Second of three samples from site Tercer Ojo in the dry season, 2013.
collection_date
2013-02
env_biome
tropical seasonally dry broadleaf forest biome
env_feature
forest soil
env_material
soil
geo_loc_name
Mexico:Quintana Roo
host
not collected
lat_lon
20.3174 N 87.3715 W
altitude
0
depth
0 - 10cm
rel_to_oxygen
aerobe
samp_mat_process
Dried at approx. 35 degrees C for 72 hours prior to return to USA; Genomic DNA extraction (MO BIO PowerSoil Kit)
samp_size
10 g
samp_vol_we_dna_ext
0.25 g
season_environment
dry
source_material_id
TO2013C
biotic_relationship
symbiont
trophic_level
obligate
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.plant-associated