seq.run3
human metagenome
Collection of functionally non-susceptible inserts (labelled with barcodes) received from nasal swabs from infants with CF.Samples are labelled as followed: Barcode number (BC##) - Infant ID-sample ID- Antibiotic used for functional screening - (optional: gene identified in insert). BC7-2001-8-SMX-dhfr-1/thymidylase.synthase; BC8-2002-10-SMX-dhfr-1; BC9-2005-5-MX-dhfr-1.(dfrB)/thymidylase.synthase(thyE); BC10-2011-11-Amp-blaZ; BC11-2021-12-SMX-dhfr-1/thymidylase.synthase(Acinetobact); BC12-2025-12-Cef-BRO-type; BC19-2001-11-Amp-EBR-1.B1.metallo-betalactamase; BC20-2002-10-Cm-type.B.cat; BC21-2021-4-SMX-dhfr-1/thymidylase.synthase(Acinetobact); BC22-2011-11-SMX-dhfr-1/thymidylase.synthase; BC23-2021-12-Cm-MdfA.(multidrug.transporter); BC24-2027-3-Amp-CARB-type; BC31-2001-11-SMX-dhfr-1; BC32-2003-2-Cm-dhfr-1/thymidylase.synthase.(Acinetobact); BC33-2021-15-SMX-; BC34-2011-11-Tet-; BC35-2021-12-Cef-; BC36-2027-4-Amp-CARB-type; BC43-2001-12-SMX-dhfr; BC44-2003-7-SMX-dhfr-1/thymidylase.synthase; BC45-2021-15-Amp-class.A; BC46-2011-14-SMX-dhfr-1/thymidylase.synthase; BC47-2025-9-Amp-class.D; BC48-2027-10-Amp-; BC55-2001-14-Cm-type.B.cat; BC56-2003-8-SMX-thymidilate.synthase; BC57-2021-15-Cm-MdfA.(multidrug.transporter); BC58-2011-14-Amp-; BC59-2025-9-SMX-dhfr-1/thymidylase.synthase(Ochrobact); BC60-2027-10-SMX-dhfr-1/thymidylase.synthase(Moraxella); BC61-2008-12-Amp-; BC67-2001-14-Tet-tetM; BC68-2003-16-SMX-; BC69-2021-15-Tet-MFS.efflux.pump; BC70-2011-14-Tet-; BC71-2025-9-Cef-class.C.AmpC; BC72-2028-13-Amp-bla_TEM-1-like; BC73-2001-8-Cm-multidrug.transporter.mdfA(MFS); BC79-2001-14-Amp-; BC80-2004-13-SMX-dhfr-1/thymidylase.synthase; BC81-2025-2-Amp-OXA213-like; BC82-2010-12-SMX-ABC.transporter/dhfr-1; BC83-2025-12-Amp-; BC85-neg.control-; BC91-2001-14-SMX-dhfr/thymidylase.synthase; BC92-2005-5-Amp-BRO-type/metallo-dependent.hydrolase/SMR.transporter; BC93-2025-7-Amp-; BC94-2021-12-Amc-class.A; BC95-2025-9-Tet-; BC96-2008-12-SMX-;
ENA first public
2018-04-20
ENA last update
2018-01-18
External Id
SAMEA104483597
INSDC center alias
IFIK
INSDC center name
Institute for Infectious Diseases of the University of Bern, Switzerland
INSDC first public
2018-04-20T17:03:21Z
INSDC last update
2018-01-18T12:33:34Z
INSDC status
public
Submitter Id
seq.run3
sample name
seq.run3