seq.run1
human metagenome
Collection of functionally non-susceptible inserts (labelled with barcodes) received from nasal swabs from infants with CF.Samples are labelled as followed: Barcode number (BC##) - Infant ID-sample ID- Antibiotic used for functional screening - (optional: gene identified in insert). BC1-2008-4-Cm-; BC2-2008-4-Tet-Bcr/CflA.-.MSF.transporter.(Orchobactrum); BC3-2008-4-SMX-folA.(type.3.DHFR-Hafnia); BC4-2008-5-Amp-SMR.transporter; BC5-2008-12-Amp-; BC6-2008-15-Amp-; BC7-2008-18-Amp-blaZ; BC8-2008-20-Cm-type.A.(7).cat; BC9-2009-3-SMX-; BC10-2009-14-Amp-CIA-type; BC11-2009-17-Amp-blaZ; BC12-2009-17-SMX-dhfr-1/thyA; BC13-2009-19-SMX-thymidylate.synthase; BC14-2009-21-Amp-blaZ; BC15-2009-21-SMX-dhfr-1/thyA; BC16-2019-7-Cm-CmlA/floR:.Cm.efflux.pump.(FS); BC17-2019-7-Amp-class.C; BC18-2019-7-SMX-dhfr-1/thyA; BC19-2019-11-Amp-class.C; BC20-2019-11-SMX-dhfr-1/thyA; BC21-2019-11-Cm-CmlA/floR:.Cm.efflux.pump.(FS); BC22-2019-15-Amp-; BC23-2019-15-Amp-; BC24-2022-3-SMX-dhfr-1/thyA; BC25-2022-4-Amp-bla_TEM-1-like; BC26-2022-6-SMX-dhfr-1.(Chryseobact); BC27-2022-11-Amp-Bcr/CflA.-.MSF.transporter; BC28-2022-11-SMX-dhfr-1.(Pseudomonas); BC29-2005-4-SMX-dhfr-1/thyA; BC30-2005-6-SMX-thymidylate.synthase.(multiple.sp); BC31-2005-8-Amp-B1.metallo-beta-lactamase(2x); BC32-2005-8-Cm-type.B.cat; BC33-2005-8-SMX-dhfr-1/thyA; BC34-2005-11-Amp-; BC35-2005-11-SMX-dhfr-1; BC36-2006-2-Amp-blaZ; BC37-2006-2-SMX-dhfr.(DfrG); BC38-2006-2-Tet-tetK.(MSF.transporter); BC39-2006-3-Amp-blaZ; BC40-2006-3-SMX-dhfr.(DfrG); BC41-2006-3-Tet-tetK.(MSF.transporter); BC42-2017-2-Amp-blaZ; BC43-2017-2-SMX-thymidylate.synthase; BC44-2017-2-Cm-CmlA/floR:.Cm.efflux.pump.(FS); BC45-2017-5-SMX-DHFR/thymidilate.synthase; BC46-2031-2-SMX-dhfr-1/thyA.(Paenibacillus); BC47-2031-2-Cm-type.A.(9)cat; BC48-2031-2-Tet-tetK.(MFS.transporter); BC49-2031-6-Tet-MFS.efflux.pump; BC50-2002-2-Cm-; BC51-2002-5-SMX-dhfr-1/thyA; BC52-cloning.positive.control-; BC53-negative.control;
ENA first public
2018-04-20
ENA last update
2018-01-18
External Id
SAMEA104483595
INSDC center alias
IFIK
INSDC center name
Institute for Infectious Diseases of the University of Bern, Switzerland
INSDC first public
2018-04-20T17:03:21Z
INSDC last update
2018-01-18T12:33:34Z
INSDC status
public
Submitter Id
seq.run1
sample name
seq.run1