MIMS Environmental/Metagenome sample from Metagenome
soil metagenome
Mine tailings, seeded with quail-bush and amended with compost 
env_package
MIGS/MIMS/MIMARKS.miscellaneous
investigation_type
metagenome
biome
Greenhouse-Mesocosm
collection_date
3/1/11
feature
Metalliferous mine tailings
geo_loc_name
Tucson, AZ
lat_lon
32.280555 N 110.941605 W
material
mine tailings amended with 15% w/w compost
project_name
Microbial communtiy structure in mine tailings undergoing phytostabilization: a mesocosm study
samp_collect_device
Core sampler
ph
6
submitted_to_insdc
SRA
investigation type
metagenome
env_package
miscellaneous natural or artificial environment
nucl_acid_ext
http://images.www.mpbio.com/docs/fastprep/FastDNASpinKitforsoil.pdf
nucl_acid_amp
http://www.earthmicrobiome.org/emp-standard-protocols/16s/
mid
CATGTAAGGCTC
adapter-forward
AATGATACGGCGACCACCGAGATCTACAC
adapter-reverse
CAAGCAGAAGACGGCATACGAGAT
seq_meth
Illumina HiSeq iTags
assembly
none
sop
http://www.earthmicrobiome.org/emp-standard-protocols/16s-taxonomic-assignments/
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.miscellaneous