seq.run2
human metagenome
Collection of functionally non-susceptible inserts (labelled with barcodes) received from nasal swabs from infants with CF.Samples are labelled as followed: Barcode number (BC##) - Infant ID-sample ID- Antibiotic used for functional screening - (optional: gene identified in insert). BC1-2013-17-SMX-dhfr-1; BC2-2005-11-Cef-ABC-type.heme.exporter; BC3-2008-20-Cef-ABC.transporter/non-described.protein; BC4-2019-11-Amc-ABC.transporter-MarcB; BC5-2007-22-Amp-blaZ; BC6-2008-10-SMX.-; BC7-2001-7-Cm-multidrug.transporter.mdfA; BC13-2013-21-Amp-BRO-type; BC14-2006-18-Cef-; BC15-2009-14-Cef-; BC16-2022-6-Cef-B1.metallo-type/non-described.protein; BC17-2007-22-Cm-type.A.(7).cat; BC18-2008-16-Amp-blaZ; BC19-neg.control; BC25-2013-21-Amc-bla_TEM-type; BC26-2006-18-Amc-bla_TEM1-like; BC27-2009-17-Amc-non-described; BC28-2022-11-Cef-QacE.SMR.efflux.transporter; BC29-CTX-1-Amp-; BC30-2009-18-Amp-blaZ; BC37-2016-7-Amp-bla_TEM-1-like/B1.metallo-beta-lactamase; BC38-2006-15-Amc-non-described.protein; BC39-2009-17-Cef-; BC40-2026-12-Cef-CIA-type; BC41-2007-4-Amp; BC42-2009-18-SMX-dhfr-1/thymidylase.synthase; BC49-2016-7-Amc; BC50-2008-4-Cef; BC51-2009-21-Cef-ABC.transporter; BC52-2031-6-Amc-; BC53-2007-4-SMX.-folA(type.3.DHFR)//thymidylase.synthase; BC54-2009-19-Amp-blaZ; BC61-2002-5-Amc-L1-betalactamase.(B3.metallo.beta-lactamase); BC62-2008-10-Cef-ABC.transporter; BC63-2019-2-Cef-ABC-type.heme.exporter.(CcmE); BC64-2031-11-Amc-; BC65-2007-19-Tet-tetM; BC66-2009-19-SMX-dfrh-1; BC73-2005-8-Amc; BC74-2008-12-Amc-bla_TEM-1-like; BC75-2019-7-Amc-MdfA-MFS.transporter; BC76-Spneumoniae100.58.positive.control-Tet-tetM; BC77-2007-24-Amp-AER-1.class.A; BC78-2009-20-Amp-blaZ; BC85-2005-8-Cef; BC86-2008-15-Amc-bla_TEM-1-like; BC87-2019-7-Cef-; BC88-2007-20-Tet-tetM; BC89-2007-24-SMX.-dhfr-1//thymidylase.synthase; BC90-2009-20-SMX-dfrh-1/thymidylase.synthase;
ENA first public
2018-04-20
ENA last update
2018-01-18
External Id
SAMEA104483596
INSDC center alias
IFIK
INSDC center name
Institute for Infectious Diseases of the University of Bern, Switzerland
INSDC first public
2018-04-20T17:03:21Z
INSDC last update
2018-01-18T12:33:34Z
INSDC status
public
Submitter Id
seq.run2
sample name
seq.run2