marine metagenome
mgs21554 Taxonomy ID:408172
BROKER_OBJECT_ID
mgm4441025.3
ENA first public
2018-10-11
ENA last update
2017-11-07
External Id
SAMEA104371131
INSDC center alias
División de Microbiología, Universidad Miguel Hernández
INSDC center name
División de Microbiología, Universidad Miguel Hernández
INSDC first public
2018-10-11T17:03:09Z
INSDC last update
2017-11-07T18:25:11Z
INSDC status
public
Submitter Id
mgs21554
broker name
Metagenomics RAST Server
collection date
2004-11-17
collection_timezone
UTC
environment (biome)
marine habitat
environment (feature)
marine habitat
environment (material)
marine habitat
environmental package
water
geodetic_system
wgs_84
geographic location (country and/or sea)
Italy
geographic location (depth)
3101
geographic location (latitude)
36.51
geographic location (longitude)
15.68
geographic location (region and locality)
Ionian Km3 station
investigation type
mimarks-survey
isol_growth_condt
17878949
metagenome_taxonomy
marine
project name
Mediterranean Bathypelagic Habitat
salinity
3.875
samp_collect_device
250 l of seawater were collected by using Niskin bottles mounted on a General Oceanics rosette from a depth of 3,010 m (sea-bottom at 3,243 m depth) at the Ionian Km3 station November 17th 2004 during a cruise of the R/V Urania. Seawater was sequentially filtered through a 5 m pore size polycarbonate filter and the filtrate passed through 0.22 m pore size Sterivex filters (Durapore, Millipore) using a peristaltic pumping system. Sterivex filters were filled with lysis buffer (40 mM EDTA, 50 mM Tris/ HCl, 0.75M sucrose) and stored at −20C, until DNA extraction.
samp_size
250 Litres
samp_store_temp
-20
sample name
mgs21554
sequencing method
other
temp
13.93
temperature
13.93
water environmental package
water