human gut metagenome
American Gut Project Stool Sample
ENA first public
2016-08-24
ENA last update
2017-08-05
External Id
SAMEA4394072
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-24T17:08:05Z
INSDC last update
2017-08-05T23:00:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000047810
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
No
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000047810
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1957
bmi
26.76
bmi_cat
Overweight
bmi_corrected
26.76
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool) - Type 1 and 2
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2016-06-21
collection month
June
collection season
Summer
collection time
11:35
collection_timestamp
2016-06-21 11:35
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
7.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA:CA
gluten
No
has_physical_specimen
true
height cm
172
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
8ff9332e65c6ce3e69c12caef9ed5cc9046ab794546a167d3f0f013c628175bf61e99ad227a86debbf105f5ecc74da73526036c122c1c782abfe69a98bd4986f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
34.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000047810
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
No
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
No
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
bf93e6454f402c70
teethbrushing_frequency
Not provided
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.104904112
vioscreen_a_cal
12.91161708
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.486712061
vioscreen_addsugar
39.24449379
vioscreen_adsugtot
36.72063089
vioscreen_age
215
vioscreen_alanine
7.808767658
vioscreen_alcohol
1.615479519
vioscreen_alcohol_servings
0.1049
vioscreen_alphacar
1214.039384
vioscreen_alphtoce
21.56635542
vioscreen_alphtoco
19.731753
vioscreen_arginine
9.205314908
vioscreen_ash
28.49906357
vioscreen_aspartam
0
vioscreen_aspartic
14.94060092
vioscreen_avcarb
162.251402
vioscreen_bcodeid
Not provided
vioscreen_betacar
6825.882192
vioscreen_betacryp
251.3439426
vioscreen_betaine
67.06651862
vioscreen_betatoco
0.543616433
vioscreen_biochana
0.018273974
vioscreen_bmi
Not provided
vioscreen_caffeine
300.5380137
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.23416
vioscreen_calcium_servings
4.83734
vioscreen_calories
2773.866952
vioscreen_carbo
186.4172089
vioscreen_cholest
1415.746062
vioscreen_choline
1355.092979
vioscreen_clac9t11
0.231260284
vioscreen_clat10c12
0.060547946
vioscreen_copper
2.073150886
vioscreen_coumest
0.042931507
vioscreen_cystine
2.069396805
vioscreen_d_cheese
0.234520544
vioscreen_d_milk
2.245451961
vioscreen_d_tot_soym
3.234164303
vioscreen_d_total
3.234164303
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.144794527
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.188520708
vioscreen_discfat_oil
42.81534407
vioscreen_discfat_sol
69.21345248
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001013699
vioscreen_f_citmlb
0.883068513
vioscreen_f_nj_citmlb
0.878821971
vioscreen_f_nj_other
1.248246535
vioscreen_f_nj_total
2.127095763
vioscreen_f_other
1.248246535
vioscreen_f_total
2.131315048
vioscreen_fat
163.6369863
vioscreen_fiber
24.16643568
vioscreen_fibh2o
4.921205453
vioscreen_fibinso
19.34257545
vioscreen_finished
9/17/15
vioscreen_fish_servings
1.72231
vioscreen_fol_deqv
572.0179366
vioscreen_fol_nat
557.4634846
vioscreen_fol_syn
8.567562072
vioscreen_formontn
0.008547945
vioscreen_fried_fish_servings
0
vioscreen_fried_food_servings
0
vioscreen_frt5_day
3
vioscreen_frtsumm
4.3
vioscreen_fructose
19.72994435
vioscreen_fruit_servings
3
vioscreen_g_nwhl
0.383945204
vioscreen_g_total
0.490493147
vioscreen_g_whl
0.106547944
vioscreen_galactos
1.078849228
vioscreen_gammtoco
15.83800032
vioscreen_gender
F
vioscreen_genistn
0.069945207
vioscreen_glac
55.79599743
vioscreen_gltc
61.79084974
vioscreen_glucose
22.74967091
vioscreen_glutamic
25.17490368
vioscreen_glycine
6.508931534
vioscreen_glycitn
0.003863014
vioscreen_grams
3841.948973
vioscreen_hei2010_dairy
9
vioscreen_hei2010_empty_calories
14.5
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
4.8
vioscreen_hei2010_greens_beans
5
vioscreen_hei2010_protien_foods
5
vioscreen_hei2010_refined_grains
10
vioscreen_hei2010_score
71.2
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
3
vioscreen_hei2010_veg
5
vioscreen_hei2010_whole_fruit
5
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
5
vioscreen_hei_fruit
4.8
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10
vioscreen_hei_milk
9
vioscreen_hei_non_juice_frt
5
vioscreen_hei_oils
10
vioscreen_hei_sat_fat
0
vioscreen_hei_score
66.2
vioscreen_hei_sodium
2.4
vioscreen_hei_sol_fat_alc_add_sug
14.6
vioscreen_hei_veg
5
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
4.264657802
vioscreen_inositol
0.107068498
vioscreen_iron
15.36435681
vioscreen_isoleuc
7.12287698
vioscreen_isomalt
0
vioscreen_joules
11605.86301
vioscreen_juice_servings
0.00849
vioscreen_lactitol
0
vioscreen_lactose
38.11394478
vioscreen_legumes
0.128191773
vioscreen_leucine
12.30989137
vioscreen_line_gi
360.0713613
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
7575.017808
vioscreen_lycopene
3737.25137
vioscreen_lysine
11.12301343
vioscreen_m_egg
6.018328607
vioscreen_m_fish_hi
0.68994521
vioscreen_m_fish_lo
0.291452047
vioscreen_m_frank
0.042630138
vioscreen_m_meat
5.761506716
vioscreen_m_mpf
7.52671166
vioscreen_m_nutsd
4.370904123
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.583260272
vioscreen_m_soy
0.000986301
vioscreen_magnes
525.7243151
vioscreen_maltitol
0
vioscreen_maltose
1.216054838
vioscreen_mangan
5.093753344
vioscreen_mannitol
0.292986308
vioscreen_methhis3
28.34704088
vioscreen_methion
3.820027223
vioscreen_mfa141
0.289287661
vioscreen_mfa161
2.712986776
vioscreen_mfa181
62.38104131
vioscreen_mfa201
0.723753378
vioscreen_mfa221
0.131589038
vioscreen_mfatot
66.49497003
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
19.731753
vioscreen_nccglbr
103.0089683
vioscreen_nccglgr
72.05139662
vioscreen_niacin
30.08235231
vioscreen_niacineq
56.34622218
vioscreen_nitrogen
24.66142444
vioscreen_non_fried_fish_servings
1.72231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.611780956
vioscreen_oxalic
417.2112586
vioscreen_oxalicm
467.0114298
vioscreen_pantothe
11.49597201
vioscreen_pectins
5.367945005
vioscreen_pfa182
24.89734054
vioscreen_pfa183
2.123287671
vioscreen_pfa184
0.028849312
vioscreen_pfa204
0.5672329
vioscreen_pfa205
0.110082193
vioscreen_pfa225
0.045561642
vioscreen_pfa226
0.304794521
vioscreen_pfatot
28.16616813
vioscreen_phenylal
7.062136799
vioscreen_phosphor
2360.07363
vioscreen_phytic
659.8742723
vioscreen_pinitol
0.000328767
vioscreen_potass
4995.514726
vioscreen_procdate
10/28/15
vioscreen_proline
8.531122913
vioscreen_protanim
121.9431828
vioscreen_protein
151.6425835
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.68679366
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
69
vioscreen_retinol
1152.466695
vioscreen_rgrain
0.200246565
vioscreen_ribofla
4.147753237
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
2.1717
vioscreen_satoco
0
vioscreen_selenium
235.2608519
vioscreen_serine
8.291616947
vioscreen_sfa100
0.809835606
vioscreen_sfa120
1.201671276
vioscreen_sfa140
3.917068774
vioscreen_sfa160
30.21126391
vioscreen_sfa170
0.218821946
vioscreen_sfa180
12.64178216
vioscreen_sfa200
0.422520593
vioscreen_sfa220
0.735287685
vioscreen_sfa40
0.784493224
vioscreen_sfa60
0.60706854
vioscreen_sfa80
0.577232883
vioscreen_sfatot
52.69515197
vioscreen_sodium
4807.24726
vioscreen_sorbitol
0.584821936
vioscreen_srvid
20770
vioscreen_starch
23.76137093
vioscreen_started
9/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0
vioscreen_sucrlose
0
vioscreen_sucrose
41.44827697
vioscreen_sweet_servings
0.08327
vioscreen_tagatose
6.039562152
vioscreen_tfa161t
0.078438359
vioscreen_tfa181t
3.533726188
vioscreen_tfa182t
0.554767097
vioscreen_tgrain
0.469232847
vioscreen_thiamin
1.564575363
vioscreen_threonin
6.257451975
vioscreen_time
24
vioscreen_totaltfa
4.306931587
vioscreen_totcla
0.291589063
vioscreen_totfolat
566.0309932
vioscreen_totsugar
125.9850706
vioscreen_tryptoph
1.575972716
vioscreen_tyrosine
5.695068359
vioscreen_user_id
20770
vioscreen_v_drkgr
0.764630127
vioscreen_v_orange
0.217780795
vioscreen_v_other
1.696986535
vioscreen_v_potato
0.079616442
vioscreen_v_starcy
0.25947945
vioscreen_v_tomato
0.297616431
vioscreen_v_total
3.31619154
vioscreen_valine
8.32501204
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
4
vioscreen_vegsumm
6.6
vioscreen_visit
1
vioscreen_vita_iu
16439.67671
vioscreen_vita_rae
1782.34726
vioscreen_vita_re
2412.230479
vioscreen_vitb12
13.03890465
vioscreen_vitb6
2.889917996
vioscreen_vitc
174.9053082
vioscreen_vitd
17.8640839
vioscreen_vitd2
0
vioscreen_vitd3
17.8640839
vioscreen_vitd_iu
714.5633562
vioscreen_vite_iu
29.42545484
vioscreen_vitk
284.7461473
vioscreen_water
3347.435959
vioscreen_weight
Not provided
vioscreen_wgrain
0.268986323
vioscreen_whole_grain_servings
0.10655
vioscreen_xylitol
0.052931511
vioscreen_zinc
21.44260087
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
79
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)