human oral metagenome
American Gut Project Mouth Sample
ENA first public
2016-08-24
ENA last update
2017-08-05
External Id
SAMEA4393919
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-24T17:08:03Z
INSDC last update
2017-08-05T23:00:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000001454
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
29
age_corrected
29.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
Yes
alcohol_types_red_wine
false
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000001454
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1987
bmi
25.10
bmi_cat
Overweight
bmi_corrected
25.10
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
09/04/2014
collection month
September
collection season
Fall
collection time
20:45
collection_timestamp
2014-09-04 20:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
0.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:LA
gluten
No
has_physical_specimen
true
height cm
175
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
5b5d76f6957fa9eb91cd42fba6f81fbea70877bbbf52bebbf2c6f444dc12b6f4b7377a67d30ef1fa92ed4cb15da5b8609ad6bfba434ef74e48b0332010feb4f1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
30.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-90.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000001454
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Yes
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Yes
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
LA
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
0ecfebf9009ce02c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.672657588
vioscreen_a_cal
490.411601
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.78449139
vioscreen_addsugar
74.66077162
vioscreen_adsugtot
59.96159033
vioscreen_age
214
vioscreen_alanine
7.316877809
vioscreen_alcohol
51.54246575
vioscreen_alcohol_servings
3.67266
vioscreen_alphacar
220.3343536
vioscreen_alphtoce
14.66150471
vioscreen_alphtoco
12.84624759
vioscreen_arginine
8.705040668
vioscreen_ash
34.67499197
vioscreen_aspartam
242.9572132
vioscreen_aspartic
13.22643809
vioscreen_avcarb
310.8668236
vioscreen_bcodeid
Not provided
vioscreen_betacar
3083.532192
vioscreen_betacryp
34.32270976
vioscreen_betaine
368.7681079
vioscreen_betatoco
0.573917797
vioscreen_biochana
0.007726027
vioscreen_bmi
Not provided
vioscreen_caffeine
417.1168664
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.39649
vioscreen_calcium_servings
4.9397
vioscreen_calories
3328.49726
vioscreen_carbo
339.3035317
vioscreen_cholest
418.924786
vioscreen_choline
575.0312928
vioscreen_clac9t11
0.198438357
vioscreen_clat10c12
0.042794523
vioscreen_copper
2.347917614
vioscreen_coumest
0.294136988
vioscreen_cystine
1.840027692
vioscreen_d_cheese
1.721890384
vioscreen_d_milk
0.667479424
vioscreen_d_tot_soym
2.39649307
vioscreen_d_total
2.39649307
vioscreen_d_yogurt
0
vioscreen_daidzein
0.33764383
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.455315242
vioscreen_discfat_oil
25.95888003
vioscreen_discfat_sol
58.33808326
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
2.74E-05
vioscreen_f_citmlb
0.062602741
vioscreen_f_nj_citmlb
0.061260276
vioscreen_f_nj_other
0.13046575
vioscreen_f_nj_total
0.191917796
vioscreen_f_other
0.13046575
vioscreen_f_total
0.193260276
vioscreen_fat
116.4914384
vioscreen_fiber
28.3717225
vioscreen_fibh2o
10.63085001
vioscreen_fibinso
17.61507251
vioscreen_finished
11/22/14
vioscreen_fish_servings
2.68288
vioscreen_fol_deqv
1128.659675
vioscreen_fol_nat
282.3831122
vioscreen_fol_syn
497.690625
vioscreen_formontn
0.001780822
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.54611
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.4
vioscreen_fructose
19.26444109
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
6.651889582
vioscreen_g_total
9.71147996
vioscreen_g_whl
3.0596168
vioscreen_galactos
0.722027337
vioscreen_gammtoco
15.09208182
vioscreen_gender
F
vioscreen_genistn
0.244082182
vioscreen_glac
170.9265732
vioscreen_gltc
183.3346533
vioscreen_glucose
23.7282454
vioscreen_glutamic
29.49720141
vioscreen_glycine
6.988439105
vioscreen_glycitn
0.016657534
vioscreen_grams
6245.541096
vioscreen_hei2010_dairy
5.5
vioscreen_hei2010_empty_calories
14
vioscreen_hei2010_fatty_acids
3
vioscreen_hei2010_fruit
0.4
vioscreen_hei2010_greens_beans
2
vioscreen_hei2010_protien_foods
5
vioscreen_hei2010_refined_grains
9.2
vioscreen_hei2010_score
55.4
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
1.4
vioscreen_hei2010_veg
3.1
vioscreen_hei2010_whole_fruit
0.7
vioscreen_hei2010_whole_grains
6.1
vioscreen_hei_drk_g_org_veg_leg
1.3
vioscreen_hei_fruit
0.4
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10
vioscreen_hei_milk
5.5
vioscreen_hei_non_juice_frt
0.7
vioscreen_hei_oils
6.5
vioscreen_hei_sat_fat
6.5
vioscreen_hei_score
51.5
vioscreen_hei_sodium
1.1
vioscreen_hei_sol_fat_alc_add_sug
8.4
vioscreen_hei_veg
3.1
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
4.139588907
vioscreen_inositol
0.062000003
vioscreen_iron
29.36553671
vioscreen_isoleuc
6.712467225
vioscreen_isomalt
0
vioscreen_joules
13926.43014
vioscreen_juice_servings
0.00268
vioscreen_lactitol
0
vioscreen_lactose
10.56252074
vioscreen_legumes
0.116767131
vioscreen_leucine
11.41498823
vioscreen_line_gi
796.288613
vioscreen_low_fat_dairy_serving
0.37997
vioscreen_lutzeax
1949.049829
vioscreen_lycopene
16609.20959
vioscreen_lysine
10.06205453
vioscreen_m_egg
0.085479454
vioscreen_m_fish_hi
0
vioscreen_m_fish_lo
1.528958924
vioscreen_m_frank
2.395534233
vioscreen_m_meat
2.948137174
vioscreen_m_mpf
11.12701332
vioscreen_m_nutsd
2.197123321
vioscreen_m_organ
0
vioscreen_m_poult
4.254383495
vioscreen_m_soy
0.006328767
vioscreen_magnes
544.7835188
vioscreen_maltitol
0
vioscreen_maltose
6.850958503
vioscreen_mangan
6.07010983
vioscreen_mannitol
0.343808213
vioscreen_methhis3
38.18522849
vioscreen_methion
3.388548467
vioscreen_mfa141
0.207150666
vioscreen_mfa161
2.108136572
vioscreen_mfa181
40.55139394
vioscreen_mfa201
0.467315047
vioscreen_mfa221
0.012000002
vioscreen_mfatot
43.78696757
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.80230228
vioscreen_nccglbr
250.5809932
vioscreen_nccglgr
175.2978275
vioscreen_niacin
50.16468322
vioscreen_niacineq
78.52531036
vioscreen_nitrogen
25.21882491
vioscreen_non_fried_fish_servings
1.88885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.784383863
vioscreen_oxalic
242.6348245
vioscreen_oxalicm
277.0940283
vioscreen_pantothe
8.793754013
vioscreen_pectins
2.529999866
vioscreen_pfa182
18.64295939
vioscreen_pfa183
1.515506441
vioscreen_pfa184
0.004958905
vioscreen_pfa204
0.252191789
vioscreen_pfa205
0.090191776
vioscreen_pfa225
0.051452062
vioscreen_pfa226
0.124493147
vioscreen_pfatot
20.85035718
vioscreen_phenylal
6.4579737
vioscreen_phosphor
2262.475342
vioscreen_phytic
1125.146575
vioscreen_pinitol
0.044821919
vioscreen_potass
3974.835274
vioscreen_procdate
10/28/15
vioscreen_proline
9.691342707
vioscreen_protanim
105.762286
vioscreen_protein
155.0625107
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
49.30143408
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
725
vioscreen_retinol
660.7964469
vioscreen_rgrain
7.194684423
vioscreen_ribofla
3.661452202
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
0.42441
vioscreen_satoco
0.097643834
vioscreen_selenium
230.8446704
vioscreen_serine
6.438355496
vioscreen_sfa100
0.830164327
vioscreen_sfa120
1.244821961
vioscreen_sfa140
3.936028133
vioscreen_sfa160
21.73123395
vioscreen_sfa170
0.20268492
vioscreen_sfa180
9.132055999
vioscreen_sfa200
0.270027411
vioscreen_sfa220
0.376273963
vioscreen_sfa40
0.984438293
vioscreen_sfa60
0.509506894
vioscreen_sfa80
0.401589004
vioscreen_sfatot
40.5185975
vioscreen_sodium
6226.634932
vioscreen_sorbitol
0.175753429
vioscreen_srvid
14663
vioscreen_starch
154.0668343
vioscreen_started
11/22/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0
vioscreen_sucrose
32.6351509
vioscreen_sweet_servings
0.41456
vioscreen_tagatose
0.794219051
vioscreen_tfa161t
0.103506846
vioscreen_tfa181t
3.528383856
vioscreen_tfa182t
0.546328777
vioscreen_tgrain
10.75018996
vioscreen_thiamin
2.858054968
vioscreen_threonin
5.653973138
vioscreen_time
20
vioscreen_totaltfa
4.34473994
vioscreen_totcla
0.242000026
vioscreen_totfolat
780.0741438
vioscreen_totsugar
93.8526006
vioscreen_tryptoph
1.701890418
vioscreen_tyrosine
5.060574633
vioscreen_user_id
14663
vioscreen_v_drkgr
0.153260281
vioscreen_v_orange
0.084958905
vioscreen_v_other
0.610520538
vioscreen_v_potato
0.503041098
vioscreen_v_starcy
0.024767123
vioscreen_v_tomato
0.745041103
vioscreen_v_total
2.121835536
vioscreen_valine
7.334932176
vioscreen_veg5_day
1.4
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.2
vioscreen_visit
1
vioscreen_vita_iu
7553.606849
vioscreen_vita_rae
928.3696062
vioscreen_vita_re
1195.940753
vioscreen_vitb12
8.990822988
vioscreen_vitb6
3.625424738
vioscreen_vitc
68.42758455
vioscreen_vitd
6.396603435
vioscreen_vitd2
0.001616438
vioscreen_vitd3
6.395041604
vioscreen_vitd_iu
255.8641374
vioscreen_vite_iu
19.14739673
vioscreen_vitk
116.2824914
vioscreen_water
5588.179452
vioscreen_weight
Not provided
vioscreen_wgrain
3.555479118
vioscreen_whole_grain_servings
3.05962
vioscreen_xylitol
0.01068493
vioscreen_zinc
25.66405982
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
77
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily