marine metagenome
ENA-FIRST-PUBLIC
2019-09-14T04:03:37Z
ENA-LAST-UPDATE
2019-09-13T16:48:11Z
External Id
SAMEA5954117
INSDC center name
PANGAEA Data Publisher for Earth and Environmental Science
INSDC first public
2019-09-14T04:03:37Z
INSDC last update
2019-09-13T16:48:11Z
INSDC status
public
Submitter Id
eDNAB0003213
access and benefit sharing, agreements and permits
not-available
access and benefit sharing, relevant Nagoya protocol
not-available
access and benefit sharing, sampled in Exclusive Economic Zone (EEZ)
not-available
acknowledgements, broker name
Stephane PESANT
acknowledgements, collected by
Ifremer, Florence PRADILLON (Florence.Pradillon@ifremer.fr)
acknowledgements, funding
eDNABYSS has received funding from Ifremer through project Pourquoi pas les Abysses, as well as ship time and transit time from the French Fleet Commission.
acknowledgements, funding
eDNABYSS has received funding from France Genomique (ANR-10-INBS-09) and Genoscope-CEA
acknowledgements, funding
The curation of eDNABYSS provenance metadata was funded by the European Union's Horizon 2020 research and innovation programme under grant agreement No 678760 (ATLAS). This output reflects only the author's view and the European Union cannot be held responsible for any use that may be made of the information contained therein.
acknowledgements, project name
eDNABYSS
checklist_accession
ERC000011
environmental condition, oxygen
not-provided
environmental condition, pH
not-provided
environmental condition, salinity
not-provided
environmental condition, temperature
not-provided
environmental material (ENVO:00010483)
seawater (ENVO:00002149) filtered on 0.2-micrometre-pore-size to rince samples
environmental material label
not-provided
environmental material, depth above sediment surface, bottom
not-available
environmental material, depth above sediment surface, top
not-available
environmental material, depth below sediment surface, bottom
not-available
environmental material, depth below sediment surface, top
not-available
environmental material, quantity, volume
not-available
environmental material, quantity, weight
not-available
environmental system, biome (ENVO:00000428)
marine benthic biome (ENVO:01000024)
environmental system, feature (ENVO:00002297)
marine hydrothermal vent biome (ENVO:01000030)
environmental system, marine region
[TPO] Tropical Pacific Ocean (MRGID:18071), Papua New guinea EEZ (MRGID 8324), North Fiji basin, Phoenix vent field
last update date
2019-09-13Z
sample comment
blank of samples PL724
sample description
This sample (eDNAB0003213) was collected at station PL724 during campaign CHUBACARC, using a no-sampling-device. The sampling event occurred at position latitudeN=-16.9497 and longitudeE=173.9185, on date/time=2019-04-10T22:18, at a depth of 1967 m. The sample material was collected in the marine biome (ENVO:00000447), targeting a layer of seawater (ENVO:00002149) filtered on 0.2-micrometre-pore-size to rince samples. The sample material was size-fractionated (>3 µm), packaged in a cryotube labelled CHU_PL05_SALSAs-4_Blank, with no addition of chemical, stored in a freezer (-80degC), and sent to Ifremer, Brest, France. This sample may be used for metabarcoding analysis.
sample name
eDNAB0003213
sample protocol, chemical treatment
no addition of chemical
sample protocol, description
not provided
sample protocol, label
SEQ-METAB_CTRL_3->
sample protocol, size fraction lower threshold
3
sample protocol, size fraction lower threshold, device
47-mm-diameter polycarbonate membrane with 3-micrometer-pore-size (Isopore TSTP)
sample protocol, size fraction upper threshold
>
sample protocol, size fraction upper threshold, device
not-available
sample protocol, target analysis
metabarcoding analysis
sample protocol, temperature treatment
in a freezer (-80degC)
sample storage, container label
CHU_PL05_SALSAs-4_Blank
sample storage, container type
cryotube
sample storage, location
Ifremer, Brest, France
sampling campaign, label
CHUBACARC
sampling campaign, plateform
RV L'Atalante (http://www.flotteoceanographique.fr/La-flotte/Navires/Navires-hauturiers/L-Atalante)
sampling campaign, report
not-available
sampling event, date-time, start
2019-04-10T22:18
sampling event, date/time, end
2019-04-11T02:57
sampling event, device label
no-sampling-device
sampling event, elevation, depth below sea surface
1967
sampling event, label
CHU_2019-04-10T22:18_PL724_Ss-4Bl_no-sampling-device
sampling event, latitude, end
-16.9497
sampling event, latitude, start
-16.9497
sampling event, longitude, end
173.9185
sampling event, longitude, start
173.9185
sampling station, label
CHU-PL724
scientific_name
marine metagenome