human nasopharyngeal metagenome
American Gut Project Nasal Mucus Sample
ENA first public
2016-08-24
ENA last update
2017-08-05
External Id
SAMEA4394119
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-08-24T17:08:05Z
INSDC last update
2017-08-05T23:00:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000049746
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64
age_corrected
64.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000049746
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952
bmi
24.89
bmi_cat
Normal
bmi_corrected
24.89
body habitat
UBERON:nose
body product
UBERON:mucus
body site
UBERON:nostril
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
05/04/2016
collection month
May
collection season
Spring
collection time
16:26
collection_timestamp
2016-05-04 16:26
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
Not provided
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
16.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-associated
env_material
mucus
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:ME
gluten
No
has_physical_specimen
true
height cm
162
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
b03b7d707e125ba38f6ae4345eb6389f63c2caed719f3d69552e392dbe3d40c17b9f8b97c1e801df3731171dea8ebdb990b7f88d87da78c626beccba0003cf7f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
Diagnosed by a medical professional (doctor, physician assistant)
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.7
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-70.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000049746
sample type
nasal mucus
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Yes
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
No
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ME
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
d76fd115ee0f67dc
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0
vioscreen_a_cal
0
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.617808219
vioscreen_addsugar
34.27087703
vioscreen_adsugtot
27.86142444
vioscreen_age
215
vioscreen_alanine
3.81471265
vioscreen_alcohol
0.013315069
vioscreen_alcohol_servings
0
vioscreen_alphacar
379.8831764
vioscreen_alphtoce
10.05556106
vioscreen_alphtoco
8.945945928
vioscreen_arginine
4.322493378
vioscreen_ash
27.06720623
vioscreen_aspartam
103.8392337
vioscreen_aspartic
8.679177815
vioscreen_avcarb
183.3238656
vioscreen_bcodeid
Not provided
vioscreen_betacar
3612.306507
vioscreen_betacryp
25.12246896
vioscreen_betaine
133.4150364
vioscreen_betatoco
0.353671223
vioscreen_biochana
0.015616439
vioscreen_bmi
Not provided
vioscreen_caffeine
285.3870719
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
6.64666
vioscreen_calcium_servings
7.86504
vioscreen_calories
2194.612842
vioscreen_carbo
197.7477526
vioscreen_cholest
339.7524187
vioscreen_choline
415.8353596
vioscreen_clac9t11
0.343506863
vioscreen_clat10c12
0.051123287
vioscreen_copper
1.636986301
vioscreen_coumest
0.127561648
vioscreen_cystine
0.840767053
vioscreen_d_cheese
1.29923288
vioscreen_d_milk
5.347424484
vioscreen_d_tot_soym
6.646657615
vioscreen_d_total
6.646657615
vioscreen_d_yogurt
0
vioscreen_daidzein
0.041479448
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.075534601
vioscreen_discfat_oil
20.17646484
vioscreen_discfat_sol
81.22232449
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000657534
vioscreen_f_citmlb
0.10794521
vioscreen_f_nj_citmlb
0.100986303
vioscreen_f_nj_other
0.332684932
vioscreen_f_nj_total
0.433726021
vioscreen_f_other
0.355260269
vioscreen_f_total
0.463260306
vioscreen_fat
116.1402825
vioscreen_fiber
14.42367295
vioscreen_fibh2o
3.898438503
vioscreen_fibinso
10.51621963
vioscreen_finished
9/17/15
vioscreen_fish_servings
3.57942
vioscreen_fol_deqv
413.4444777
vioscreen_fol_nat
342.0328981
vioscreen_fol_syn
41.96879281
vioscreen_formontn
0.001369863
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.28493
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.9
vioscreen_fructose
12.40884926
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
2.106904163
vioscreen_g_total
3.08194463
vioscreen_g_whl
0.975068476
vioscreen_galactos
0.349589037
vioscreen_gammtoco
9.478026006
vioscreen_gender
F
vioscreen_genistn
0.058082194
vioscreen_glac
70.25994756
vioscreen_gltc
74.75134311
vioscreen_glucose
13.58956282
vioscreen_glutamic
21.49728703
vioscreen_glycine
2.822493044
vioscreen_glycitn
0.005753425
vioscreen_grams
6210.826027
vioscreen_hei2010_dairy
10
vioscreen_hei2010_empty_calories
8
vioscreen_hei2010_fatty_acids
0
vioscreen_hei2010_fruit
1.3
vioscreen_hei2010_greens_beans
2.6
vioscreen_hei2010_protien_foods
3.3
vioscreen_hei2010_refined_grains
10
vioscreen_hei2010_score
52.4
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
1.7
vioscreen_hei2010_veg
5
vioscreen_hei2010_whole_fruit
2.5
vioscreen_hei2010_whole_grains
3
vioscreen_hei_drk_g_org_veg_leg
1.7
vioscreen_hei_fruit
1.3
vioscreen_hei_grains
2.3
vioscreen_hei_meat_beans
6.6
vioscreen_hei_milk
10
vioscreen_hei_non_juice_frt
2.5
vioscreen_hei_oils
7.7
vioscreen_hei_sat_fat
0
vioscreen_hei_score
48.3
vioscreen_hei_sodium
1.4
vioscreen_hei_sol_fat_alc_add_sug
8.3
vioscreen_hei_veg
5
vioscreen_hei_whl_grains
1.5
vioscreen_height
Not provided
vioscreen_histidin
2.770191767
vioscreen_inositol
0.037726029
vioscreen_iron
7.726767177
vioscreen_isoleuc
4.766410598
vioscreen_isomalt
0
vioscreen_joules
9182.258904
vioscreen_juice_servings
0.05912
vioscreen_lactitol
0
vioscreen_lactose
70.74898331
vioscreen_legumes
0.038821918
vioscreen_leucine
8.540575503
vioscreen_line_gi
380.8714897
vioscreen_low_fat_dairy_serving
2.67907
vioscreen_lutzeax
2016.889041
vioscreen_lycopene
13528.49315
vioscreen_lysine
7.432191781
vioscreen_m_egg
0.147863017
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
1.282109592
vioscreen_m_frank
0.053342464
vioscreen_m_meat
0.059643837
vioscreen_m_mpf
2.25876699
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
0
vioscreen_m_poult
0.1059452
vioscreen_m_soy
0.000931507
vioscreen_magnes
398.9672945
vioscreen_maltitol
0
vioscreen_maltose
2.060109763
vioscreen_mangan
5.340301263
vioscreen_mannitol
0.341917817
vioscreen_methhis3
6.573205399
vioscreen_methion
2.38183577
vioscreen_mfa141
0.147643834
vioscreen_mfa161
1.501479392
vioscreen_mfa181
34.7996174
vioscreen_mfa201
0.363945237
vioscreen_mfa221
0.129287667
vioscreen_mfatot
37.18996682
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.945945928
vioscreen_nccglbr
131.2116973
vioscreen_nccglgr
91.77525685
vioscreen_niacin
12.87276862
vioscreen_niacineq
33.3987104
vioscreen_nitrogen
15.8989017
vioscreen_non_fried_fish_servings
2.78538
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.262684443
vioscreen_oxalic
240.0994221
vioscreen_oxalicm
221.8732449
vioscreen_pantothe
8.19723285
vioscreen_pectins
2.650410859
vioscreen_pfa182
12.67797383
vioscreen_pfa183
1.818712041
vioscreen_pfa184
0.031945208
vioscreen_pfa204
0.066575335
vioscreen_pfa205
0.128109605
vioscreen_pfa225
0.0429863
vioscreen_pfa226
0.241808246
vioscreen_pfatot
15.10460188
vioscreen_phenylal
4.735506073
vioscreen_phosphor
2193.157705
vioscreen_phytic
553.3174658
vioscreen_pinitol
0.014383562
vioscreen_potass
4238.551027
vioscreen_procdate
10/28/15
vioscreen_proline
8.263479238
vioscreen_protanim
80.2104131
vioscreen_protein
99.47567423
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.26695741
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
68
vioscreen_retinol
1127.353082
vioscreen_rgrain
2.143972402
vioscreen_ribofla
3.473917086
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
1.60559
vioscreen_satoco
0
vioscreen_selenium
134.8371147
vioscreen_serine
5.283506796
vioscreen_sfa100
1.928273825
vioscreen_sfa120
2.023917922
vioscreen_sfa140
7.226328393
vioscreen_sfa160
25.51090539
vioscreen_sfa170
0.286410982
vioscreen_sfa180
10.64849302
vioscreen_sfa200
0.207315063
vioscreen_sfa220
0.214767122
vioscreen_sfa40
2.278383522
vioscreen_sfa60
1.519369883
vioscreen_sfa80
1.142054811
vioscreen_sfatot
53.59278682
vioscreen_sodium
4047.964726
vioscreen_sorbitol
0.189698624
vioscreen_srvid
20782
vioscreen_starch
49.62909354
vioscreen_started
9/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0
vioscreen_sucrlose
0
vioscreen_sucrose
19.11550728
vioscreen_sweet_servings
0.50411
vioscreen_tagatose
0.365479435
vioscreen_tfa161t
0.067561643
vioscreen_tfa181t
2.587643642
vioscreen_tfa182t
0.578794547
vioscreen_tgrain
2.983260314
vioscreen_thiamin
1.249835623
vioscreen_threonin
3.931314881
vioscreen_time
21
vioscreen_totaltfa
3.454849703
vioscreen_totcla
0.395506851
vioscreen_totfolat
384.0011986
vioscreen_totsugar
119.1631742
vioscreen_tryptoph
1.233808209
vioscreen_tyrosine
4.278630338
vioscreen_user_id
20782
vioscreen_v_drkgr
0.226027397
vioscreen_v_orange
0.0739452
vioscreen_v_other
1.268493234
vioscreen_v_potato
0.21389041
vioscreen_v_starcy
0.099589047
vioscreen_v_tomato
0.6132055
vioscreen_v_total
2.494794454
vioscreen_valine
5.741013618
vioscreen_veg5_day
3.8
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
5
vioscreen_visit
1
vioscreen_vita_iu
10115.99384
vioscreen_vita_rae
1445.257705
vioscreen_vita_re
1763.155993
vioscreen_vitb12
9.380411226
vioscreen_vitb6
1.732000147
vioscreen_vitc
72.66681293
vioscreen_vitd
22.27199941
vioscreen_vitd2
0.003369863
vioscreen_vitd3
22.26868445
vioscreen_vitd_iu
890.8799765
vioscreen_vite_iu
13.28728863
vioscreen_vitk
112.5973138
vioscreen_water
5789.240411
vioscreen_weight
Not provided
vioscreen_wgrain
0.839260321
vioscreen_whole_grain_servings
0.97507
vioscreen_xylitol
0.01471233
vioscreen_zinc
13.19720409
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
65
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)