marine metagenome
ENA-FIRST-PUBLIC
2019-09-14T04:03:37Z
ENA-LAST-UPDATE
2019-09-13T16:50:38Z
External Id
SAMEA5954132
INSDC center name
PANGAEA Data Publisher for Earth and Environmental Science
INSDC first public
2019-09-14T04:03:37Z
INSDC last update
2019-09-13T16:50:38Z
INSDC status
public
Submitter Id
eDNAB0003228
access and benefit sharing, agreements and permits
not-available
access and benefit sharing, relevant Nagoya protocol
not-available
access and benefit sharing, sampled in Exclusive Economic Zone (EEZ)
not-available
acknowledgements, broker name
Stephane PESANT
acknowledgements, collected by
Ifremer, Jozée SARRAZIN (jozee.sarrazin@ifremer.fr)
acknowledgements, funding
eDNABYSS has received funding from Ifremer through project Pourquoi pas les Abysses, as well as ship time and transit time from the French Fleet Commission.
acknowledgements, funding
eDNABYSS has received funding from France Genomique (ANR-10-INBS-09) and Genoscope-CEA
acknowledgements, funding
The curation of eDNABYSS provenance metadata was funded by the European Union's Horizon 2020 research and innovation programme under grant agreement No 678760 (ATLAS). This output reflects only the author's view and the European Union cannot be held responsible for any use that may be made of the information contained therein.
acknowledgements, project name
eDNABYSS/MERCES
checklist_accession
ERC000011
environmental condition, oxygen
not-provided
environmental condition, pH
not-provided
environmental condition, salinity
not-provided
environmental condition, temperature
not-provided
environmental material (ENVO:00010483)
seawater (ENVO:00002149)
environmental material label
not-provided
environmental material, depth above sediment surface, bottom
not-available
environmental material, depth above sediment surface, top
not-available
environmental material, depth below sediment surface, bottom
not-available
environmental material, depth below sediment surface, top
not-available
environmental material, quantity, volume
not-available
environmental material, quantity, weight
not-available
environmental system, biome (ENVO:00000428)
marine benthic biome (ENVO:01000024)
environmental system, feature (ENVO:00002297)
marine hydrothermal vent biome (ENVO:01000030)
environmental system, marine region
[IHO] North Atlantic Ocean (MRGID: 1912) Lucky Strike (MRGID: 29631)
last update date
2019-09-13Z
sample comment
half of filter, unextracted
sample description
This sample (eDNAB0003228) was collected at station I2 during campaign MOMARSAT2019, using a water-sampler-(PEPITO)-deployed-with-HOV. The sampling event occurred at position latitudeN=37.29 and longitudeE=-32.28, on date/time=2019-07-01T14:30, at a depth of 1651 m. The sample material was collected in the marine biome (ENVO:00000447), targeting a layer of seawater (ENVO:00002149) below the sea surface. The sample material was size-fractionated (>0.45 µm), packaged in a cryotube (2 mL) labelled I2_19w, with no addition of chemical, stored in a freezer (-80degC), and sent to Ifremer, Brest, France. This sample may be used for metabarcoding analysis.
sample name
eDNAB0003228
sample protocol, chemical treatment
no addition of chemical
sample protocol, label
SEQ-METAB_WCOL_0.45->
sample protocol, size fraction lower threshold
0.45
sample protocol, size fraction lower threshold, device
47-mm-diameter mixed cellulose esters transfer membrane with 0.45-micrometer-pore-size (Millipore ref:HATF04700)
sample protocol, size fraction upper threshold
>
sample protocol, size fraction upper threshold, device
not-applicable
sample protocol, target analysis
metabarcoding analysis
sample protocol, temperature treatment
in a freezer (-80degC)
sample storage, container label
I2_19w
sample storage, container type
cryotube (2 mL)
sample storage, location
Ifremer, Brest, France
sampling campaign, label
MOMARSAT2019
sampling campaign, plateform
RV Pourquoi pas ? (http://www.flotteoceanographique.fr/La-flotte/Navires/Navires-hauturiers/Pourquoi-pas)
sampling campaign, report
not-available
sampling event, date-time, start
2019-07-01T14:30
sampling event, date/time, end
not provided
sampling event, device collection area
not provided
sampling event, device label
water-sampler-(PEPITO)-deployed-with-HOV
sampling event, elevation, depth below sea surface
1651
sampling event, label
MoMa2019_2019-07-01T14:30_I2_1956_water-sampler-(PEPITO)-deployed-with-HOV
sampling event, latitude, end
37.29
sampling event, latitude, start
37.29
sampling event, longitude, end
-32.28
sampling event, longitude, start
-32.28
sampling station, label
MoMa2019-I2
scientific_name
marine metagenome