MDW_2016-10-23Z_ST175-ST185-ST202_CTD_water-sampler-(niskin)-deployed-with-CTD-Rosette_water-layer-(44m)-below-sea-surface_size-fractionated-(0.2-2µm)_eDNAB0002538
marine metagenome
sample description
This sample (eDNAB0002538) was collected at station ST175-ST185-ST202 during campaign MedWaves, using a water-sampler-(niskin)-deployed-with-CTD-Rosette. The sampling event occurred at position latitudeN=36.374615 and longitudeE=-2.92431, on date/time=2016-10-23Z, at a depth of 44 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a layer of saline water (ENVO:00002010), not-available-not-available cm below the seabed surface. The sample material was size-fractionated (0.2-2 µm), packaged in a ziploc bag labelled MDW_CTD_ST175_44_0.2 + MDW_CTD_ST202_47_0.2 + MDW_CTD_ST185_50_0.2, with no addition of chemical, stored freezer (-80degC), and sent to Ifremer, Sète, France. This sample may be used for metabarcoding analysis.
sampling campaign, label
MedWaves
sampling campaign, plateform
RV Sarmiento de Gamboa
sampling campaign, report
OREJAS, Covadonga et al. (2017. April 21) Cruise Summary Report - MEDWAVES survey (MEDiterranean out flow WAter and Vulnerable EcosystemS). Zenodo. http://doi.org/10.5281/zenodo.556516
sampling station, label
MDW_ST175-ST185-ST202
sampling event, label
MDW_2016-10-23Z_ST175-ST185-ST202_CTD_water-sampler-(niskin)-deployed-with-CTD-Rosette
sampling event, date-time, start
2016-10-23Z
sampling event, date/time, end
not-provided
sampling event, latitude, start
36.374615
sampling event, latitude, end
not-provided
sampling event, longitude, start
-2.92431
sampling event, longitude, end
not-provided
sampling event, elevation, depth below sea surface
44
sampling event, device label
water-sampler-(niskin)-deployed-with-CTD-Rosette
sampling event, device collection area
not-available
environmental system, biome (ENVO:00000428)
marine pelagic biome (ENVO:01000023)
environmental system, marine region
[MS] Mediterranean Sea (MRGID 1905), Alboran Sea (MRGID 3324), Strait of Gibraltar (MRGID 3346), Olivos Bank (MRGID 4163)
environmental system, feature (ENVO:00002297)
strait (ENVO:00000394)
environmental condition, temperature
not-provided
environmental condition, salinity
not-provided
environmental condition, oxygen
not-provided
environmental condition, pH
not-provided
environmental material (ENVO:00010483)
saline water (ENVO:00002010)
environmental material, depth below sediment surface, top
not-available
environmental material, depth below sediment surface, bottom
not-available
environmental material, depth above sediment surface, top
not-available
environmental material, depth above sediment surface, bottom
not-available
environmental material, quantity, volume
5
environmental material, quantity, weight
not-provided
environmental material label
not-provided
sample protocol, label
SEQ-METAB_WCOL_0.2-2
sample protocol, description
not-provided
sample protocol, target analysis
metabarcoding analysis
sample protocol, size fraction lower threshold
0.2
sample protocol, size fraction lower threshold, device
filtration unit with 49-centimetre-square polyetherlsulfone membrane with 0.22-micrometre-pore-size (ref:Dutscher 199950B)
sample protocol, size fraction upper threshold
2
sample protocol, size fraction upper threshold, device
not-provided
sample protocol, chemical treatment
no addition of chemical
sample protocol, temperature treatment
freezer (-80degC)
sample storage, container label
MDW_CTD_ST175_44_0.2 + MDW_CTD_ST202_47_0.2 + MDW_CTD_ST185_50_0.2
sample storage, container type
ziploc bag
sample storage, location
Ifremer, Sète, France
collected_by
Ifremer, Sophie ARNAUD-HAOND (Sophie.Arnaud@ifremer.fr)
comment
This sample is a pool of samples eDNAB0000531, eDNAB0000591, and eDNAB0000646.
project name
eDNABYSS
funding acknowledgements
eDNABYSS has received funding from France Genomique (ANR-10-INBS-09) and Genoscope-CEA
funding acknowledgements
eDNABYSS has received funding from Ifremer through project Pourquoi pas les Abysses, as well as ship time and transit time from the French Fleet Commission.
funding acknowledgements
The curation of eDNABYSS provenance metadata was funded by the European Union's Horizon 2020 research and innovation programme under grant agreement No 678760 (ATLAS). This output reflects only the author's view and the European Union cannot be held responsible for any use that may be made of the information contained therein.
access and benefit sharing, sampled in Exclusive Economic Zone (EEZ)
not-provided
access and benefit sharing, relevant Nagoya protocol
not-provided
access and benefit sharing, agreements and permits
not-provided
broker name
Stephane PESANT
last update date
2019-07-01Z
checklist_accession
ERC000011
ENA-FIRST-PUBLIC
2019-08-05
ENA-LAST-UPDATE
2019-08-04