Pool of vaginal swabs from the same subject on 8 consecutive days , with a Chlamydia DNA spike-in
vaginal metagenome
Pool of vaginal swabs from the same subject on 8 consecutive days , with a Chlamydia DNA spike-in
ENA-FIRST-PUBLIC
2020-10-22T17:06:06Z
ENA-LAST-UPDATE
2020-03-22T18:56:36Z
External Id
SAMEA6634147
INSDC center name
Centre for Translational Microbiome Research (CTMR)
INSDC first public
2020-10-22T17:06:06Z
INSDC last update
2020-03-22T18:56:36Z
INSDC status
public
Submitter Id
Pool1_V1-V3_2_spike-0
collection date
2017
environment (biome)
vagina
environment (feature)
lumen of vagina
environment (material)
mucus
experimental factor
0 ng Chlamydia spike-in
geographic location (country and/or sea)
Denmark
geographic location (latitude)
55.7
geographic location (longitude)
-12.6
geographic location (region and locality)
Copenhagen
host body product
vaginal fluid
host sex
female
host subject id
1
human vaginal environmental package
human-vaginal
investigation type
mimarks-survey
pcr primers
4xTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGAGTTTGATYMTGGCTCAG,1xTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGGGTTCGATTCTGGCTCAG,1xTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGAATTTGATCTTGGTTCAG/GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGATTACCGCGGCTGCTGG
project name
OptiVag
sample collection device or method
swab
sample name
Pool1_V1-V3_2_spike-0
scientific_name
vaginal metagenome
sequencing method
Illumina MiSeq
target gene
16S
target subfragment
V1-V3