GENOSCOPE_in-the-lab_mock-community_MOCK-1
marine metagenome
sample description
Five different metazoan mock communities were prepared using standardized 10 ng/µL DNA extracts of ten deep-sea specimens belonging to five taxonomic groups (Polychaeta, Crustacea, Anthozoa, Bivalvia, Gastropoda). The mock communities differed in terms of relative proportions of total genomic DNA from each species, spanning from an equimolar community (Mock-1) to increasingly unbalanced communities, with increasing dominance of three species (Mock-2 to Mock-5). The composition of Mock-1 is Polychaeta; Eunicida; Eunice norvegica (10%), Crustacea; Malacostraca; Rimicaris sp. (formerly Chorocaris sp.) (10%), Crustacea; Malacostraca; Alvinocaris muricola (10%), Crustacea; Malacostraca; Munidopsis sp. (10%), Anthozoa; Alcyonacea; Acanella arbuscula (10%), Anthozoa; Scleractinia; Caryophylliidae; Desmophyllum dianthus (10%), Bivalvia; Veneroida; Vesicomyidae; Calyptogena pacifica (10%), Bivalvia; Veneroida; Vesicomyidae; Christineconcha regab (formerly Calyptogena sp.) (10%), Bivalvia; Veneroida; Vesicomyidae; Vesicomya gigas (10%), Gastropoda; Patellogastropoda; Paralepetopsis sp. (10%)
sampling campaign, label
not-available
sampling campaign, plateform
not-available
sampling campaign, report
not-available
sampling station, label
GENOSCOPE_in-the-lab
sampling event, label
GENOSCOPE_9999-99-99T99:99Z_in-the-lab_mock-community_no-sampling-device
sampling event, date-time, start
9999-99-99T99:99Z
sampling event, date/time, end
not-available
sampling event, latitude, start
not-available
sampling event, latitude, end
not-available
sampling event, longitude, start
not-available
sampling event, longitude, end
not-available
sampling event, elevation, depth below sea surface
not-available
sampling event, device label
no-sampling-device
sampling event, device collection area
not-available
environmental system, biome (ENVO:00000428)
not-available
environmental system, marine region
not-available
environmental system, feature (ENVO:00002297)
not-available
environmental condition, temperature
not-provided
environmental condition, salinity
not-provided
environmental condition, oxygen
not-provided
environmental condition, pH
not-provided
environmental material (ENVO:00010483)
not-available
environmental material, depth below sediment surface, top
not-available
environmental material, depth below sediment surface, bottom
not-available
environmental material, depth above sediment surface, top
not-available
environmental material, depth above sediment surface, bottom
not-available
environmental material, quantity, volume
not-available
environmental material, quantity, weight
not-available
environmental material label
not-provided
sample protocol, label
SEQ-METAB_MOCK-1
sample protocol, description
not-provided
sample protocol, target analysis
metabarcoding analysis
sample protocol, size fraction lower threshold
not-provided
sample protocol, size fraction lower threshold, device
not-provided
sample protocol, size fraction upper threshold
not-provided
sample protocol, size fraction upper threshold, device
not-provided
sample protocol, chemical treatment
not-available
sample protocol, temperature treatment
not-available
sample storage, container label
Control_Negatif_PCR_2
sample storage, container type
not-available
sample storage, location
not-available
collected_by
not-available
comment
Five different metazoan mock communities were prepared using standardized 10 ng/µL DNA extracts of ten deep-sea specimens belonging to five taxonomic groups (Polychaeta, Crustacea, Anthozoa, Bivalvia, Gastropoda). The mock communities differed in terms of relative proportions of total genomic DNA from each species, spanning from an equimolar community (Mock-1) to increasingly unbalanced communities, with increasing dominance of three species (Mock-2 to Mock-5). The composition of Mock-1 is Polychaeta; Eunicida; Eunice norvegica (10%), Crustacea; Malacostraca; Rimicaris sp. (formerly Chorocaris sp.) (10%), Crustacea; Malacostraca; Alvinocaris muricola (10%), Crustacea; Malacostraca; Munidopsis sp. (10%), Anthozoa; Alcyonacea; Acanella arbuscula (10%), Anthozoa; Scleractinia; Caryophylliidae; Desmophyllum dianthus (10%), Bivalvia; Veneroida; Vesicomyidae; Calyptogena pacifica (10%), Bivalvia; Veneroida; Vesicomyidae; Christineconcha regab (formerly Calyptogena sp.) (10%), Bivalvia; Veneroida; Vesicomyidae; Vesicomya gigas (10%), Gastropoda; Patellogastropoda; Paralepetopsis sp. (10%)
project name
eDNABYSS
funding acknowledgements
eDNABYSS has received funding from France Genomique (ANR-10-INBS-09) and Genoscope-CEA
funding acknowledgements
eDNABYSS has received funding from Ifremer through project Pourquoi pas les Abysses, as well as ship time and transit time from the French Fleet Commission.
funding acknowledgements
The curation of eDNABYSS provenance metadata was funded by the European Union's Horizon 2020 research and innovation programme under grant agreement No 678760 (ATLAS). This output reflects only the author's view and the European Union cannot be held responsible for any use that may be made of the information contained therein.
access and benefit sharing, sampled in Exclusive Economic Zone (EEZ)
not-available
access and benefit sharing, relevant Nagoya protocol
not-available
access and benefit sharing, agreements and permits
not-available
broker name
Stephane PESANT
last update date
2019-07-01Z
ENA-FIRST-PUBLIC
2019-08-05
ENA-LAST-UPDATE
2019-08-04