Lolly Moor1 (LM1) RNA-seq reads alignment against v1 KW1 scaffolds using adjusted BWA parameters
Hymenoscyphus fraxineus
RNA-Seq of a strain of Hymenoscyphus fraxineus isolated from Lolly Moor, Norfolk, England. Sequences from LM1 are aligned to Kenninghall wood (KW1) version 1 scaffolds (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_scaffolds.fa) using BWA mem v 0.7.4 with following options -A 5 -B 3 -O 5 -E 2.
ENA first public
2015-02-11
ENA last update
2015-01-16
External Id
SAMEA3209423
INSDC center alias
THE SAINSBURY LABORATORY
INSDC center name
THE SAINSBURY LABORATORY
INSDC first public
2015-02-11T17:02:02Z
INSDC last update
2015-01-16T16:01:58Z
INSDC status
public
Submitter Id
LM1_RNA-Seq adjusted BWA mem
collected by
Steve Collin
geographic location (country and/or sea)
United Kingdom: England
host
Fraxinus excelsior
isolation source
branch cross section, pith material
lat lon
52.761092 N 1.042749 E
sample name
LM1_RNA-Seq adjusted BWA mem