American Gut Project; 10317.000023203
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632644
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023203
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23203
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
19.67
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-16
collection month
March
collection season
Spring
collection time
05:00
collection_timestamp
2015-03-16 05:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1614.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
6ea4e386b6d0ef3cfd5a6813a5674aab2a20f4b379f3f6ea749ce8050318715d69e8254785a34fd7e5f35d540bd53862c501bc1b25ede62f40241482786dfa70
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000023203
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
49bc3863049d6281
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.62295875
vioscreen_a_cal
217.56671659999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.344356338
vioscreen_addsugar
19.39273732
vioscreen_adsugtot
16.75660183
vioscreen_age
215.0
vioscreen_alanine
2.770466008
vioscreen_alcohol
24.06610927
vioscreen_alcohol_servings
1.62296
vioscreen_alphacar
3153.7126710000002
vioscreen_alphtoce
15.5637294
vioscreen_alphtoco
13.276300299999999
vioscreen_arginine
3.25569851
vioscreen_ash
21.15156384
vioscreen_aspartam
0.0
vioscreen_aspartic
5.855533631
vioscreen_avcarb
247.91314210000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
14621.81644
vioscreen_betacryp
220.25483730000002
vioscreen_betaine
170.03868789999999
vioscreen_betatoco
0.487342437
vioscreen_biochana
0.010273973
vioscreen_bmi
Not provided
vioscreen_caffeine
426.9926798
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.13123
vioscreen_calcium_servings
2.93759
vioscreen_calories
2293.99863
vioscreen_carbo
276.420762
vioscreen_cholest
203.4736729
vioscreen_choline
304.3711687
vioscreen_clac9t11
0.18136983399999998
vioscreen_clat10c12
0.034301371000000004
vioscreen_copper
1.593315396
vioscreen_coumest
0.026164387
vioscreen_cystine
0.840328938
vioscreen_d_cheese
0.599205498
vioscreen_d_milk
0.49027400600000004
vioscreen_d_tot_soym
1.13123286
vioscreen_d_total
1.13123286
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
1.693178611
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.337836111
vioscreen_discfat_oil
35.00235445
vioscreen_discfat_sol
52.57892765
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.838383505
vioscreen_f_nj_citmlb
0.082767126
vioscreen_f_nj_other
0.074000001
vioscreen_f_nj_total
0.156794519
vioscreen_f_other
0.18142466100000001
vioscreen_f_total
1.01983559
vioscreen_fat
92.23872003
vioscreen_fiber
28.16402504
vioscreen_fibh2o
7.397480335
vioscreen_fibinso
20.81545377
vioscreen_finished
3/14/15
vioscreen_fish_servings
1.11846
vioscreen_fol_deqv
773.0189212
vioscreen_fol_nat
435.2490581999999
vioscreen_fol_syn
198.68482450000002
vioscreen_formontn
0.001452055
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
1.4
vioscreen_frtsumm
2.0
vioscreen_fructose
17.50180731
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
6.373370612
vioscreen_g_total
7.698877622
vioscreen_g_whl
1.325588947
vioscreen_galactos
0.223808184
vioscreen_gammtoco
11.96947908
vioscreen_gender
false
vioscreen_genistn
2.070165012
vioscreen_glac
128.3122753
vioscreen_gltc
141.60749140000001
vioscreen_glucose
19.16397153
vioscreen_glutamic
12.61383776
vioscreen_glycine
2.339671681
vioscreen_glycitn
0.48073977100000004
vioscreen_grams
4320.727054999999
vioscreen_hei2010_dairy
3.8
vioscreen_hei2010_empty_calories
16.6
vioscreen_hei2010_fatty_acids
3.2
vioscreen_hei2010_fruit
2.8
vioscreen_hei2010_greens_beans
3.5
vioscreen_hei2010_protien_foods
3.1
vioscreen_hei2010_refined_grains
6.1
vioscreen_hei2010_score
55.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.9
vioscreen_hei2010_whole_grains
3.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
6.3
vioscreen_hei_milk
3.8
vioscreen_hei_non_juice_frt
0.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.4
vioscreen_hei_score
56.2
vioscreen_hei_sodium
1.0
vioscreen_hei_sol_fat_alc_add_sug
11.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.9
vioscreen_height
Not provided
vioscreen_histidin
1.529123301
vioscreen_inositol
0.396356201
vioscreen_iron
16.56616813
vioscreen_isoleuc
2.550137622
vioscreen_isomalt
0.0
vioscreen_joules
9598.089041
vioscreen_juice_servings
1.7261900000000001
vioscreen_lactitol
0.0
vioscreen_lactose
7.137534782
vioscreen_legumes
0.323534257
vioscreen_leucine
4.634163968999999
vioscreen_line_gi
731.3127568
vioscreen_low_fat_dairy_serving
0.060520000000000004
vioscreen_lutzeax
4447.957534
vioscreen_lycopene
10801.29932
vioscreen_lysine
3.448630137
vioscreen_m_egg
0.310465753
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.037835615
vioscreen_m_meat
0.243205449
vioscreen_m_mpf
1.296274013
vioscreen_m_nutsd
0.600547937
vioscreen_m_organ
0.0
vioscreen_m_poult
0.377890391
vioscreen_m_soy
0.109616423
vioscreen_magnes
430.956464
vioscreen_maltitol
0.0
vioscreen_maltose
3.827617656
vioscreen_mangan
9.035425138999999
vioscreen_mannitol
0.381671184
vioscreen_methhis3
4.904575128
vioscreen_methion
1.214136996
vioscreen_mfa141
0.070465752
vioscreen_mfa161
0.932904136
vioscreen_mfa181
29.07134525
vioscreen_mfa201
0.38145212700000003
vioscreen_mfa221
0.071945211
vioscreen_mfatot
30.76311537
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.56150738
vioscreen_nccglbr
190.6635488
vioscreen_nccglgr
133.3894478
vioscreen_niacin
20.25244007
vioscreen_niacineq
31.45452697
vioscreen_nitrogen
9.901779885
vioscreen_non_fried_fish_servings
1.11846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.386575276
vioscreen_oxalic
470.70321060000003
vioscreen_oxalicm
397.4752568
vioscreen_pantothe
4.988958489
vioscreen_pectins
3.7011772260000004
vioscreen_pfa182
19.58684718
vioscreen_pfa183
2.172548059
vioscreen_pfa184
0.016
vioscreen_pfa204
0.06191780400000001
vioscreen_pfa205
0.055287677
vioscreen_pfa225
0.024958908
vioscreen_pfa226
0.11753425099999999
vioscreen_pfatot
22.10909808
vioscreen_phenylal
2.797342713
vioscreen_phosphor
1319.500514
vioscreen_phytic
1070.980394
vioscreen_pinitol
0.011424658
vioscreen_potass
4119.0503420000005
vioscreen_procdate
10/28/15
vioscreen_proline
4.246027531
vioscreen_protanim
23.74707031
vioscreen_protein
60.77475385
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.02882331
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
526.0
vioscreen_retinol
487.83394689999994
vioscreen_rgrain
4.7675343130000005
vioscreen_ribofla
1.8847126159999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.46753
vioscreen_satoco
1.5881371069999999
vioscreen_selenium
88.75470355
vioscreen_serine
2.914163835
vioscreen_sfa100
1.045616505
vioscreen_sfa120
1.241561513
vioscreen_sfa140
3.6449589980000003
vioscreen_sfa160
16.27912698
vioscreen_sfa170
0.246547918
vioscreen_sfa180
6.957289437000001
vioscreen_sfa200
0.22775341699999999
vioscreen_sfa220
0.167753403
vioscreen_sfa40
1.3250687270000001
vioscreen_sfa60
0.779123217
vioscreen_sfa80
0.49098627799999994
vioscreen_sfatot
32.77367562
vioscreen_sodium
4319.811643999999
vioscreen_sorbitol
0.298657519
vioscreen_srvid
18314.0
vioscreen_starch
139.6271618
vioscreen_started
3/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.27873972
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.76797143
vioscreen_sweet_servings
0.18993
vioscreen_tagatose
0.585616438
vioscreen_tfa161t
0.033506848
vioscreen_tfa181t
2.0312871230000002
vioscreen_tfa182t
0.394164412
vioscreen_tgrain
8.800189961000001
vioscreen_thiamin
1.7264932709999998
vioscreen_threonin
2.283123696
vioscreen_time
43.0
vioscreen_totaltfa
2.465424671
vioscreen_totcla
0.216630094
vioscreen_totfolat
633.9336473
vioscreen_totsugar
70.80082406
vioscreen_tryptoph
0.671972531
vioscreen_tyrosine
1.986767076
vioscreen_user_id
18314.0
vioscreen_v_drkgr
0.32241096
vioscreen_v_orange
0.886821924
vioscreen_v_other
0.8810684000000001
vioscreen_v_potato
0.7870410659999999
vioscreen_v_starcy
0.246876714
vioscreen_v_tomato
0.656575326
vioscreen_v_total
3.7811777610000004
vioscreen_valine
3.027013993
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.5
vioscreen_visit
1.0
vioscreen_vita_iu
28807.61096
vioscreen_vita_rae
1846.9018839999999
vioscreen_vita_re
3205.967466
vioscreen_vitb12
3.1004658739999997
vioscreen_vitb6
2.275232602
vioscreen_vitc
168.935991
vioscreen_vitd
5.708411146
vioscreen_vitd2
0.049726026
vioscreen_vitd3
5.65871281
vioscreen_vitd_iu
228.3364458
vioscreen_vite_iu
20.32540267
vioscreen_vitk
195.70862590000002
vioscreen_water
3862.4702049999996
vioscreen_weight
Not provided
vioscreen_wgrain
4.032876712
vioscreen_whole_grain_servings
1.32559
vioscreen_xylitol
0.030876716000000002
vioscreen_zinc
9.637065898
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily