American Gut Project; 10317.000029340
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633696
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029340
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
74.0
age_corrected
74.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29340
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1941.0
bmi
0.23
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-25
collection month
June
collection season
Summer
collection time
14:15
collection_timestamp
2015-06-25 14:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
1800.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
093dd00c793890629ee665b3c475a9e0b56aac6a34bd0640c705cbc5db824062b7fdcd288b509f80026f3d05e0de97e416e52da988d304b340ffef5c8f2c50f9
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
Not provided
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029340
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5537ea6b51bf0470
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.17038355800000002
vioscreen_a_cal
21.27112318
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
17.67347897
vioscreen_addsugar
89.11334546
vioscreen_adsugtot
74.52219071
vioscreen_age
215.0
vioscreen_alanine
3.393342319
vioscreen_alcohol
2.735506742
vioscreen_alcohol_servings
0.17038
vioscreen_alphacar
1865.8375
vioscreen_alphtoce
17.28413822
vioscreen_alphtoco
15.57262816
vioscreen_arginine
4.963314025
vioscreen_ash
25.78872003
vioscreen_aspartam
0.0
vioscreen_aspartic
7.3103843379999995
vioscreen_avcarb
280.717637
vioscreen_bcodeid
Not provided
vioscreen_betacar
7994.311643999999
vioscreen_betacryp
299.38792810000007
vioscreen_betaine
331.54238010000006
vioscreen_betatoco
0.679424714
vioscreen_biochana
0.013013698999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
426.88771399999996
vioscreen_calcium
true
vioscreen_calcium_avg
214.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
3
vioscreen_calcium_from_dairy_servings
0.80173
vioscreen_calcium_servings
2.70811
vioscreen_calories
2394.65274
vioscreen_carbo
320.6417166
vioscreen_cholest
198.78099319999998
vioscreen_choline
345.8954195
vioscreen_clac9t11
0.129945206
vioscreen_clat10c12
0.028191782999999998
vioscreen_copper
2.164246107
vioscreen_coumest
0.302547946
vioscreen_cystine
0.995068527
vioscreen_d_cheese
0.35495889700000005
vioscreen_d_milk
0.23180820000000002
vioscreen_d_tot_soym
0.8017261240000001
vioscreen_d_total
0.8017261240000001
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.327013679
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.0266300569999998
vioscreen_discfat_oil
31.90589148
vioscreen_discfat_sol
43.36066192
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003150685
vioscreen_f_citmlb
1.588739766
vioscreen_f_nj_citmlb
0.8345753290000001
vioscreen_f_nj_other
2.906575075
vioscreen_f_nj_total
3.7412601000000003
vioscreen_f_other
2.906575075
vioscreen_f_total
4.495424537
vioscreen_fat
96.69990368
vioscreen_fiber
39.88580372
vioscreen_fibh2o
12.38756154
vioscreen_fibinso
27.60057791
vioscreen_finished
6/24/15
vioscreen_fish_servings
2.715
vioscreen_fol_deqv
547.2874572000001
vioscreen_fol_nat
456.53146399999997
vioscreen_fol_syn
53.33207941
vioscreen_formontn
0.005123288
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
6.0
vioscreen_frtsumm
9.0
vioscreen_fructose
51.72608626
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
2.109589041
vioscreen_g_total
6.4130417920000005
vioscreen_g_whl
4.303424992
vioscreen_galactos
0.790000017
vioscreen_gammtoco
14.11975332
vioscreen_gender
false
vioscreen_genistn
0.176520549
vioscreen_glac
131.3085081
vioscreen_gltc
145.3412136
vioscreen_glucose
49.29438142
vioscreen_glutamic
15.08038313
vioscreen_glycine
3.332521203
vioscreen_glycitn
0.01569863
vioscreen_grams
4389.841096
vioscreen_hei2010_dairy
2.6
vioscreen_hei2010_empty_calories
13.7
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.2
vioscreen_hei2010_veg
4.6
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.7
vioscreen_hei_score
74.7
vioscreen_hei_sodium
4.9
vioscreen_hei_sol_fat_alc_add_sug
13.6
vioscreen_hei_veg
4.6
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.98090419
vioscreen_inositol
0.44167125100000004
vioscreen_iron
12.14518006
vioscreen_isoleuc
3.0893424260000004
vioscreen_isomalt
0.0
vioscreen_joules
10019.23082
vioscreen_juice_servings
1.50833
vioscreen_lactitol
0.0
vioscreen_lactose
7.224575931
vioscreen_legumes
0.015178081999999999
vioscreen_leucine
5.448055236
vioscreen_line_gi
649.2981164
vioscreen_low_fat_dairy_serving
0.23778000000000002
vioscreen_lutzeax
6590.776712
vioscreen_lycopene
3779.013699
vioscreen_lysine
4.421342238
vioscreen_m_egg
0.181589059
vioscreen_m_fish_hi
0.584547947
vioscreen_m_fish_lo
0.96523287
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
0.25041094199999997
vioscreen_m_mpf
3.090301263
vioscreen_m_nutsd
4.355616572
vioscreen_m_organ
0.0
vioscreen_m_poult
1.280958871
vioscreen_m_soy
0.004986302
vioscreen_magnes
500.35740580000004
vioscreen_maltitol
0.0
vioscreen_maltose
6.93624786
vioscreen_mangan
6.872192048
vioscreen_mannitol
0.801561497
vioscreen_methhis3
10.21764301
vioscreen_methion
1.505808373
vioscreen_mfa141
0.050712329
vioscreen_mfa161
0.870602877
vioscreen_mfa181
33.86545109
vioscreen_mfa201
0.550575319
vioscreen_mfa221
0.077945202
vioscreen_mfatot
35.54183166
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
15.57262816
vioscreen_nccglbr
231.5515625
vioscreen_nccglgr
161.9577483
vioscreen_niacin
27.63786119
vioscreen_niacineq
41.66931186
vioscreen_nitrogen
13.941532
vioscreen_non_fried_fish_servings
2.715
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.818629936
vioscreen_oxalic
345.7670591
vioscreen_oxalicm
418.72628419999995
vioscreen_pantothe
7.51706844
vioscreen_pectins
6.659179687999999
vioscreen_pfa182
19.99504227
vioscreen_pfa183
1.507342278
vioscreen_pfa184
0.018958904
vioscreen_pfa204
0.09380822400000001
vioscreen_pfa205
0.082986304
vioscreen_pfa225
0.034821918
vioscreen_pfa226
0.175232864
vioscreen_pfatot
21.98824781
vioscreen_phenylal
3.3374799339999996
vioscreen_phosphor
1398.7605310000001
vioscreen_phytic
1223.925599
vioscreen_pinitol
0.032876712
vioscreen_potass
4244.405822
vioscreen_procdate
10/28/15
vioscreen_proline
4.713204998
vioscreen_protanim
34.864980200000005
vioscreen_protein
83.31823095
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
48.4499786
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
370.0
vioscreen_retinol
285.9939854
vioscreen_rgrain
2.555013411
vioscreen_ribofla
2.2572054930000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.86008
vioscreen_satoco
0.0
vioscreen_selenium
153.9424015
vioscreen_serine
3.5808767660000003
vioscreen_sfa100
0.872931493
vioscreen_sfa120
2.098136839
vioscreen_sfa140
3.13890431
vioscreen_sfa160
15.51695741
vioscreen_sfa170
0.163835614
vioscreen_sfa180
6.689206978
vioscreen_sfa200
0.397232892
vioscreen_sfa220
0.715123341
vioscreen_sfa40
0.9066300070000001
vioscreen_sfa60
0.544356171
vioscreen_sfa80
0.503726029
vioscreen_sfatot
32.05230629
vioscreen_sodium
3460.400685
vioscreen_sorbitol
1.489753451
vioscreen_srvid
19961.0
vioscreen_starch
76.06610659
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
60.43648866
vioscreen_sweet_servings
1.16624
vioscreen_tagatose
1.9242741
vioscreen_tfa161t
0.028054791000000003
vioscreen_tfa181t
2.216794534
vioscreen_tfa182t
0.40528769299999995
vioscreen_tgrain
6.008192423
vioscreen_thiamin
1.715506943
vioscreen_threonin
2.6819723890000002
vioscreen_time
36.0
vioscreen_totaltfa
2.92958884
vioscreen_totcla
0.158493147
vioscreen_totfolat
509.86318489999996
vioscreen_totsugar
177.7725492
vioscreen_tryptoph
0.841890351
vioscreen_tyrosine
2.47717837
vioscreen_user_id
19961.0
vioscreen_v_drkgr
0.571041076
vioscreen_v_orange
0.335945192
vioscreen_v_other
0.8156712359999999
vioscreen_v_potato
0.200876711
vioscreen_v_starcy
0.171013704
vioscreen_v_tomato
0.337917819
vioscreen_v_total
2.4325477909999997
vioscreen_valine
3.6134802410000004
vioscreen_veg5_day
6.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
4.9
vioscreen_visit
1.0
vioscreen_vita_iu
16080.328769999998
vioscreen_vita_rae
1042.40625
vioscreen_vita_re
1798.81661
vioscreen_vitb12
2.5591504240000003
vioscreen_vitb6
2.379945185
vioscreen_vitc
218.7159247
vioscreen_vitd
5.1569309180000005
vioscreen_vitd2
0.001123288
vioscreen_vitd3
5.155807871
vioscreen_vitd_iu
206.27723669999997
vioscreen_vite_iu
23.18830265
vioscreen_vitk
329.8163741
vioscreen_water
3892.444521
vioscreen_weight
Not provided
vioscreen_wgrain
3.453150752
vioscreen_whole_grain_servings
4.30342
vioscreen_xylitol
0.067671251
vioscreen_zinc
10.36679487
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
75.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)