Foxley Wood1 (FW1) variants from RNA-seq reads alignment against v1 KW1 scaffolds
Hymenoscyphus fraxineus
Variant analysis of RNA-Seq data of a fungla infected sample isolated from Foxley Wood, Norfolk, England. RNA_seq reads from FW1 are aligned to Kenninghall wood (KW1) version 1 scaffolds (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_scaffolds.fa) using BWA mem v 0.7.4 and Samtools 0.1.19 was used to generate variants
ENA first public
2015-02-12
ENA last update
2015-02-11
External Id
SAMEA3250463
INSDC center alias
THE SAINSBURY LABORATORY
INSDC center name
THE SAINSBURY LABORATORY
INSDC first public
2015-02-12T17:06:49Z
INSDC last update
2015-02-11T18:37:35Z
INSDC status
public
Submitter Id
FW1_RNA-Seq Variants
collected by
Steve Collin
geographic location (country and/or sea)
United Kingdom: England
host
Fraxinus excelsior
isolation source
branch cross section, pith material
lat lon
52.761092 N 1.042749 E
sample name
FW1_RNA-Seq Variants