American Gut Project; 10317.000022626
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632540
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022626
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
20s
age years
23.0
age_corrected
23.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22626
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1992.0
bmi
21.52
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-01-23
collection month
January
collection season
Winter
collection time
19:45
collection_timestamp
2015-01-23 19:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
82.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
478e553a7fce884d499fa82f8b222ebd9ef696f6d34e768f1e9b4c415a6c12417ff64ee92c1532f2f1c92261bbf96e78bd88cded2be70ab0d3e7f0d13052ae09
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.8
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022626
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
dca988197eac2203
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.386027799
vioscreen_addsugar
21.42120478
vioscreen_adsugtot
17.42652103
vioscreen_age
215.0
vioscreen_alanine
0.700986303
vioscreen_alcohol
0.000136986
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
6784.559589
vioscreen_alphtoce
4.92753438
vioscreen_alphtoco
4.786657882
vioscreen_arginine
0.8119177409999999
vioscreen_ash
9.520547945
vioscreen_aspartam
0.0
vioscreen_aspartic
1.8020818840000001
vioscreen_avcarb
138.7849422
vioscreen_bcodeid
Not provided
vioscreen_betacar
25960.621919999998
vioscreen_betacryp
53.43495826
vioscreen_betaine
77.76046661
vioscreen_betatoco
0.07093151
vioscreen_biochana
0.0035068490000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
89.06411066
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.044680000000000004
vioscreen_calcium_servings
0.87164
vioscreen_calories
707.3416096
vioscreen_carbo
165.9578446
vioscreen_cholest
2.19613706
vioscreen_choline
109.5957192
vioscreen_clac9t11
0.002191781
vioscreen_clat10c12
0.000273973
vioscreen_copper
0.9262466220000001
vioscreen_coumest
0.0
vioscreen_cystine
0.25194522399999997
vioscreen_d_cheese
0.0010136989999999999
vioscreen_d_milk
0.019013699
vioscreen_d_tot_soym
0.044684935
vioscreen_d_total
0.044684935
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.207890403
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.15736987
vioscreen_discfat_oil
0.508657544
vioscreen_discfat_sol
1.067671183
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002493151
vioscreen_f_citmlb
0.48824655200000006
vioscreen_f_nj_citmlb
0.48824655200000006
vioscreen_f_nj_other
2.880794494
vioscreen_f_nj_total
3.36909581
vioscreen_f_other
2.880794494
vioscreen_f_total
3.36909581
vioscreen_fat
4.648766923
vioscreen_fiber
27.17369167
vioscreen_fibh2o
6.817232983999999
vioscreen_fibinso
20.44630244
vioscreen_finished
1/22/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
228.2524401
vioscreen_fol_nat
226.5506207
vioscreen_fol_syn
1.0003561779999999
vioscreen_formontn
0.000246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.7
vioscreen_fructose
32.72163956
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.098986294
vioscreen_g_total
0.862821981
vioscreen_g_whl
0.763835583
vioscreen_galactos
0.171561651
vioscreen_gammtoco
1.122273902
vioscreen_gender
false
vioscreen_genistn
0.291424665
vioscreen_glac
67.13720034
vioscreen_gltc
78.57437928
vioscreen_glucose
27.67734643
vioscreen_glutamic
2.507506823
vioscreen_glycine
0.5411781210000001
vioscreen_glycitn
0.045835615
vioscreen_grams
2098.687671
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
3.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
0.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.5
vioscreen_hei2010_sea_foods_plant_protiens
1.3
vioscreen_hei2010_sodium
7.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.0
vioscreen_hei_meat_beans
0.9
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
0.6
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
63.4
vioscreen_hei_sodium
5.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.6
vioscreen_height
Not provided
vioscreen_histidin
0.40142462700000003
vioscreen_inositol
0.11868492
vioscreen_iron
5.628026675
vioscreen_isoleuc
0.560000025
vioscreen_isomalt
0.0
vioscreen_joules
2959.518151
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.73736982
vioscreen_legumes
0.034657533
vioscreen_leucine
0.908082225
vioscreen_line_gi
396.8607877
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
5591.184932
vioscreen_lycopene
782.6992295
vioscreen_lysine
0.7699999670000001
vioscreen_m_egg
0.000684932
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.010136986
vioscreen_m_mpf
0.010136986
vioscreen_m_nutsd
0.01030137
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0009315069999999999
vioscreen_magnes
196.8300514
vioscreen_maltitol
0.0
vioscreen_maltose
3.759643889
vioscreen_mangan
3.639808299
vioscreen_mannitol
1.002410889
vioscreen_methhis3
0.06413698599999999
vioscreen_methion
0.196109573
vioscreen_mfa141
0.000465753
vioscreen_mfa161
0.057095886
vioscreen_mfa181
0.851342523
vioscreen_mfa201
0.006767123000000001
vioscreen_mfa221
0.0046575340000000005
vioscreen_mfatot
0.9395616509999999
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
4.786657882
vioscreen_nccglbr
112.5308754
vioscreen_nccglgr
78.70687607
vioscreen_niacin
6.385150899
vioscreen_niacineq
9.164300621
vioscreen_nitrogen
2.475561523
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.32723288300000003
vioscreen_oxalic
234.49370719999996
vioscreen_oxalicm
209.4275257
vioscreen_pantothe
2.7509588369999998
vioscreen_pectins
5.824000696000001
vioscreen_pfa182
0.9781642970000001
vioscreen_pfa183
0.327178077
vioscreen_pfa184
0.0
vioscreen_pfa204
0.000767123
vioscreen_pfa205
0.00005479999999999999
vioscreen_pfa225
0.0
vioscreen_pfa226
0.0
vioscreen_pfatot
1.3088766859999998
vioscreen_phenylal
0.6173151720000001
vioscreen_phosphor
352.9645548
vioscreen_phytic
297.1143836
vioscreen_pinitol
0.009561644000000001
vioscreen_potass
2602.440582
vioscreen_procdate
10/28/15
vioscreen_proline
0.655369881
vioscreen_protanim
0.670328762
vioscreen_protein
15.24334198
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.57257599
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
597.0
vioscreen_retinol
5.1664383560000005
vioscreen_rgrain
0.163397269
vioscreen_ribofla
0.690657524
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.25668
vioscreen_satoco
0.0
vioscreen_selenium
13.3867134
vioscreen_serine
0.624931565
vioscreen_sfa100
0.015972603000000002
vioscreen_sfa120
0.02109589
vioscreen_sfa140
0.071287672
vioscreen_sfa160
0.888904143
vioscreen_sfa170
0.001616438
vioscreen_sfa180
0.255205463
vioscreen_sfa200
0.004082191
vioscreen_sfa220
0.0030410959999999996
vioscreen_sfa40
0.017835616999999998
vioscreen_sfa60
0.008547945999999999
vioscreen_sfa80
0.008027397
vioscreen_sfatot
1.324356205
vioscreen_sodium
955.2392123
vioscreen_sorbitol
1.827506956
vioscreen_srvid
16963.0
vioscreen_starch
28.35893354
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.433124199999998
vioscreen_sweet_servings
0.08032
vioscreen_tagatose
0.40460272
vioscreen_tfa161t
0.0007123289999999999
vioscreen_tfa181t
0.089342467
vioscreen_tfa182t
0.030082192999999997
vioscreen_tgrain
0.8257808320000001
vioscreen_thiamin
0.510054748
vioscreen_threonin
0.685424721
vioscreen_time
10.0
vioscreen_totaltfa
0.153479464
vioscreen_totcla
0.002575342
vioscreen_totfolat
227.551006
vioscreen_totsugar
87.93640304
vioscreen_tryptoph
0.16695889
vioscreen_tyrosine
0.371753431
vioscreen_user_id
16963.0
vioscreen_v_drkgr
0.49419179399999996
vioscreen_v_orange
1.9075342469999998
vioscreen_v_other
0.5290684529999999
vioscreen_v_potato
0.005479451999999999
vioscreen_v_starcy
0.12547944
vioscreen_v_tomato
0.058739727
vioscreen_v_total
3.120520856
vioscreen_valine
0.699041079
vioscreen_veg5_day
6.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.2
vioscreen_visit
1.0
vioscreen_vita_iu
48983.490410000006
vioscreen_vita_rae
2453.468151
vioscreen_vita_re
4901.77089
vioscreen_vitb12
0.07131507
vioscreen_vitb6
1.477232549
vioscreen_vitc
140.47342680000003
vioscreen_vitd
0.021999999
vioscreen_vitd2
0.0
vioscreen_vitd3
0.021999999
vioscreen_vitd_iu
0.8799999709999999
vioscreen_vite_iu
7.131177092000001
vioscreen_vitk
244.22189640000002
vioscreen_water
1904.034589
vioscreen_weight
Not provided
vioscreen_wgrain
0.662383573
vioscreen_whole_grain_servings
0.76384
vioscreen_xylitol
0.067616444
vioscreen_zinc
2.6821371
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Occasionally (1-2 times/week)