10317.000022551; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632519
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:01Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022551
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
22551
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
34.41
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-01-01
collection month
January
collection season
Winter
collection time
08:50
collection_timestamp
2015-01-01 08:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by an alternative medicine practitioner
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
2.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d623596b4fff248ea18a9363f0fd212ceca81315e59971d5362be529dae31fcd01ac9a9093d7f748f61787cc4972ed329d0ac477819d48707d2b844b5e318a23
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
26.4
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Yes
longitude
-81.7
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not sure
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022551
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
0a8fa9f2514013a7
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Not provided
vioscreen_a_bev
0.002191781
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.408054634
vioscreen_addsugar
17.90652023
vioscreen_adsugtot
10.91062982
vioscreen_age
214.0
vioscreen_alanine
4.640684865
vioscreen_alcohol
0.010794521000000001
vioscreen_alcohol_servings
0.0021899999999999997
vioscreen_alphacar
326.8653896
vioscreen_alphtoce
17.65728542
vioscreen_alphtoco
16.32032989
vioscreen_arginine
6.258904778
vioscreen_ash
19.46254816
vioscreen_aspartam
0.0
vioscreen_aspartic
8.790383535
vioscreen_avcarb
54.01542166
vioscreen_bcodeid
Not provided
vioscreen_betacar
12601.23425
vioscreen_betacryp
104.7555437
vioscreen_betaine
72.23921233
vioscreen_betatoco
0.47884927
vioscreen_biochana
0.002575342
vioscreen_bmi
Not provided
vioscreen_caffeine
355.0053724
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.057010000000000005
vioscreen_calcium_servings
1.52721
vioscreen_calories
1410.718065
vioscreen_carbo
75.91241438
vioscreen_cholest
318.71078769999997
vioscreen_choline
414.4726884
vioscreen_clac9t11
0.063972599
vioscreen_clat10c12
0.020712328999999998
vioscreen_copper
1.339260321
vioscreen_coumest
0.267589036
vioscreen_cystine
1.130822085
vioscreen_d_cheese
0.024246574
vioscreen_d_milk
0.03271233
vioscreen_d_tot_soym
0.057013702
vioscreen_d_total
0.057013702
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.43536987299999996
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.002383548
vioscreen_discfat_oil
41.14389179999999
vioscreen_discfat_sol
23.42257599
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000109589
vioscreen_f_citmlb
0.18273969699999998
vioscreen_f_nj_citmlb
0.17904109199999999
vioscreen_f_nj_other
0.18246574899999998
vioscreen_f_nj_total
0.361506841
vioscreen_f_other
0.18246574899999998
vioscreen_f_total
0.365205446
vioscreen_fat
90.75265411
vioscreen_fiber
21.89747967
vioscreen_fibh2o
6.6232328229999995
vioscreen_fibinso
15.33586259
vioscreen_finished
12/18/14
vioscreen_fish_servings
1.58712
vioscreen_fol_deqv
413.65355310000007
vioscreen_fol_nat
409.9935788
vioscreen_fol_syn
2.1516711930000003
vioscreen_formontn
0.0030136990000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.7
vioscreen_fructose
9.606766374
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.11734247099999999
vioscreen_g_total
0.150219173
vioscreen_g_whl
0.032876712
vioscreen_galactos
0.08846575599999999
vioscreen_gammtoco
11.25526006
vioscreen_gender
false
vioscreen_genistn
0.258712351
vioscreen_glac
7.885259926
vioscreen_gltc
9.236685306
vioscreen_glucose
11.6264916
vioscreen_glutamic
14.58303992
vioscreen_glycine
4.575753492
vioscreen_glycitn
0.046000003
vioscreen_grams
3648.388014
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.2
vioscreen_hei2010_whole_grains
0.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.6
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
3.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.4
vioscreen_hei_score
57.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
2.4442740659999997
vioscreen_inositol
0.04712329
vioscreen_iron
10.08808326
vioscreen_isoleuc
3.926465847
vioscreen_isomalt
0.0
vioscreen_joules
5902.444521
vioscreen_juice_servings
0.00742
vioscreen_lactitol
0.0
vioscreen_lactose
0.397013709
vioscreen_legumes
0.006520548
vioscreen_leucine
6.358630538
vioscreen_line_gi
70.07133990000001
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
18305.2
vioscreen_lycopene
1744.333562
vioscreen_lysine
6.195808808
vioscreen_m_egg
0.890301346
vioscreen_m_fish_hi
0.597452075
vioscreen_m_fish_lo
0.307013692
vioscreen_m_frank
0.49095889600000003
vioscreen_m_meat
1.549287644
vioscreen_m_mpf
6.946602766
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.0
vioscreen_m_poult
4.0019176739999995
vioscreen_m_soy
0.009205479
vioscreen_magnes
360.7153682
vioscreen_maltitol
0.0
vioscreen_maltose
1.5305205880000001
vioscreen_mangan
2.955040668
vioscreen_mannitol
0.27909585600000003
vioscreen_methhis3
26.43857288
vioscreen_methion
2.016246555
vioscreen_mfa141
0.03950685
vioscreen_mfa161
1.153178176
vioscreen_mfa181
38.01424979
vioscreen_mfa201
0.6574794820000001
vioscreen_mfa221
0.11753425099999999
vioscreen_mfatot
40.09572453
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.32032989
vioscreen_nccglbr
44.21153682
vioscreen_nccglgr
30.92276595
vioscreen_niacin
26.53662778
vioscreen_niacineq
42.56125856
vioscreen_nitrogen
14.63334225
vioscreen_non_fried_fish_servings
1.58712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.085150732
vioscreen_oxalic
671.7765839
vioscreen_oxalicm
729.2081336
vioscreen_pantothe
6.167178136
vioscreen_pectins
4.423150551
vioscreen_pfa182
20.64986221
vioscreen_pfa183
1.6938356159999999
vioscreen_pfa184
0.023671231
vioscreen_pfa204
0.24715068199999998
vioscreen_pfa205
0.089123284
vioscreen_pfa225
0.06016438599999999
vioscreen_pfa226
0.219506857
vioscreen_pfatot
23.09827429
vioscreen_phenylal
3.74123301
vioscreen_phosphor
1011.24649
vioscreen_phytic
535.9250428
vioscreen_pinitol
0.004547945
vioscreen_potass
3033.930479
vioscreen_procdate
10/28/15
vioscreen_proline
3.951452469
vioscreen_protanim
61.49693386
vioscreen_protein
88.95333369
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.45808273
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
681.0
vioscreen_retinol
144.7330479
vioscreen_rgrain
0.09205479
vioscreen_ribofla
1.788383588
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.94148
vioscreen_satoco
0.0
vioscreen_selenium
111.9161601
vioscreen_serine
3.880218924
vioscreen_sfa100
0.178054768
vioscreen_sfa120
0.30600002800000004
vioscreen_sfa140
0.9629861909999999
vioscreen_sfa160
12.66284916
vioscreen_sfa170
0.075397267
vioscreen_sfa180
5.033315162
vioscreen_sfa200
0.39484934299999996
vioscreen_sfa220
0.71569866
vioscreen_sfa40
0.21112328100000002
vioscreen_sfa60
0.128383563
vioscreen_sfa80
0.08334246099999999
vioscreen_sfatot
21.17931427
vioscreen_sodium
2903.635616
vioscreen_sorbitol
0.16194519699999999
vioscreen_srvid
16360.0
vioscreen_starch
7.261725439
vioscreen_started
12/18/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.963917353
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0014246570000000002
vioscreen_tfa161t
0.022739724
vioscreen_tfa181t
1.912547992
vioscreen_tfa182t
0.427972621
vioscreen_tgrain
0.143972601
vioscreen_thiamin
0.972054761
vioscreen_threonin
3.4083833880000003
vioscreen_time
20.0
vioscreen_totaltfa
2.38383555
vioscreen_totcla
0.08517808800000001
vioscreen_totfolat
412.1452483
vioscreen_totsugar
33.43964576
vioscreen_tryptoph
0.960958737
vioscreen_tyrosine
2.948027478
vioscreen_user_id
16360.0
vioscreen_v_drkgr
1.8445205480000002
vioscreen_v_orange
0.042876714
vioscreen_v_other
2.6812602
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.34575343700000005
vioscreen_v_total
4.914410986
vioscreen_valine
4.171287725
vioscreen_veg5_day
9.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
9.8
vioscreen_visit
1.0
vioscreen_vita_iu
21843.76438
vioscreen_vita_rae
1212.820805
vioscreen_vita_re
2280.9080480000002
vioscreen_vitb12
2.648794848
vioscreen_vitb6
1.961314915
vioscreen_vitc
155.2957406
vioscreen_vitd
4.159808099
vioscreen_vitd2
0.000630137
vioscreen_vitd3
4.159178015
vioscreen_vitd_iu
166.392324
vioscreen_vite_iu
24.31251873
vioscreen_vitk
795.8606164
vioscreen_water
3386.131507
vioscreen_weight
Not provided
vioscreen_wgrain
0.05191781
vioscreen_whole_grain_servings
0.03288
vioscreen_xylitol
0.035835619
vioscreen_zinc
9.647315122
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
105.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)