American Gut Project; 10317.000029524
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633738
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029524
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29524
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
21.48
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
07/06/2015
collection month
July
collection season
Summer
collection time
09:15
collection_timestamp
2015-07-06 09:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
51.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
7130633d1b3280947f28d74a2285605ab66b282a01533fa0a84dda702fc5c2f68534a09859dfeda2e5f1c0582cda2151d4e3e2fd023e1c5d6da0758ef6766975
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
55.9
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-3.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029524
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
1fba0857ac83d08a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.34071233
vioscreen_a_cal
42.4997271
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.101095957
vioscreen_addsugar
11.14868499
vioscreen_adsugtot
9.212137468
vioscreen_age
215.0
vioscreen_alanine
2.195863154
vioscreen_alcohol
5.324027451
vioscreen_alcohol_servings
0.34071
vioscreen_alphacar
7842.646575
vioscreen_alphtoce
14.50112238
vioscreen_alphtoco
13.44840807
vioscreen_arginine
2.7022191710000003
vioscreen_ash
21.939647100000002
vioscreen_aspartam
0.0
vioscreen_aspartic
4.866383508
vioscreen_avcarb
211.53356159999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
33335.28493
vioscreen_betacryp
290.90595030000003
vioscreen_betaine
189.5359375
vioscreen_betatoco
0.37600005700000005
vioscreen_biochana
0.031424656
vioscreen_bmi
Not provided
vioscreen_caffeine
295.8377997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.14468
vioscreen_calcium_servings
2.19611
vioscreen_calories
1561.587842
vioscreen_carbo
256.7547303
vioscreen_cholest
100.68057579999999
vioscreen_choline
270.221661
vioscreen_clac9t11
0.019972603000000002
vioscreen_clat10c12
0.003589041
vioscreen_copper
1.8835343869999999
vioscreen_coumest
0.13550685699999998
vioscreen_cystine
0.7612602340000001
vioscreen_d_cheese
0.132986304
vioscreen_d_milk
0.01169863
vioscreen_d_tot_soym
0.144684935
vioscreen_d_total
0.144684935
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.109013806
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.972574647
vioscreen_discfat_oil
21.12200075
vioscreen_discfat_sol
12.46649454
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002575343
vioscreen_f_citmlb
0.359260287
vioscreen_f_nj_citmlb
0.356164384
vioscreen_f_nj_other
3.537890625
vioscreen_f_nj_total
3.8940550089999997
vioscreen_f_other
3.537890625
vioscreen_f_total
3.897178336
vioscreen_fat
44.18259578
vioscreen_fiber
45.22243686
vioscreen_fibh2o
13.36964362
vioscreen_fibinso
31.95021672
vioscreen_finished
6/30/15
vioscreen_fish_servings
1.9255799999999998
vioscreen_fol_deqv
443.1884418000001
vioscreen_fol_nat
417.5517979
vioscreen_fol_syn
15.06249331
vioscreen_formontn
0.004383562
vioscreen_fried_fish_servings
1.38962
vioscreen_fried_food_servings
0.24931999999999999
vioscreen_frt5_day
6.0
vioscreen_frtsumm
7.8
vioscreen_fructose
41.59273866
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
1.007315105
vioscreen_g_total
4.355644331000001
vioscreen_g_whl
3.348329142
vioscreen_galactos
0.07602740200000001
vioscreen_gammtoco
8.742984802999999
vioscreen_gender
false
vioscreen_genistn
7.615562794
vioscreen_glac
95.59952911
vioscreen_gltc
111.1036173
vioscreen_glucose
44.39515197
vioscreen_glutamic
8.847509097
vioscreen_glycine
1.874903849
vioscreen_glycitn
1.049589058
vioscreen_grams
3450.596575
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.6
vioscreen_hei_meat_beans
6.4
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.178109616
vioscreen_inositol
0.214602724
vioscreen_iron
12.6208757
vioscreen_isoleuc
1.886356051
vioscreen_isomalt
0.0
vioscreen_joules
6533.678082
vioscreen_juice_servings
0.00625
vioscreen_lactitol
0.0
vioscreen_lactose
0.221616437
vioscreen_legumes
0.14767123699999998
vioscreen_leucine
3.126164183
vioscreen_line_gi
581.6011557999999
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19277.5411
vioscreen_lycopene
8525.415068
vioscreen_lysine
2.55183557
vioscreen_m_egg
0.319095894
vioscreen_m_fish_hi
0.305452049
vioscreen_m_fish_lo
0.791890434
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.097342462
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.473506854
vioscreen_magnes
401.72110449999997
vioscreen_maltitol
0.0
vioscreen_maltose
3.6427951760000004
vioscreen_mangan
7.281095489
vioscreen_mannitol
1.074109472
vioscreen_methhis3
3.077780528
vioscreen_methion
0.758493084
vioscreen_mfa141
0.01389041
vioscreen_mfa161
0.56841092
vioscreen_mfa181
19.86079837
vioscreen_mfa201
0.16175341699999998
vioscreen_mfa221
0.09120548199999999
vioscreen_mfatot
20.79465834
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.44840807
vioscreen_nccglbr
163.46674869999998
vioscreen_nccglgr
114.3305116
vioscreen_niacin
15.39611248
vioscreen_niacineq
24.38577965
vioscreen_nitrogen
8.129973111
vioscreen_non_fried_fish_servings
0.53596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.241890602
vioscreen_oxalic
368.15042810000006
vioscreen_oxalicm
381.1822346
vioscreen_pantothe
5.632575048
vioscreen_pectins
9.600932417000001
vioscreen_pfa182
8.28619368
vioscreen_pfa183
1.011534307
vioscreen_pfa184
0.016109589
vioscreen_pfa204
0.043780821
vioscreen_pfa205
0.065150692
vioscreen_pfa225
0.019260273
vioscreen_pfa226
0.130876714
vioscreen_pfatot
9.616299898
vioscreen_phenylal
2.005945159
vioscreen_phosphor
908.5404966
vioscreen_phytic
836.8964897000001
vioscreen_pinitol
0.038301371
vioscreen_potass
4556.97637
vioscreen_procdate
10/28/15
vioscreen_proline
2.594301657
vioscreen_protanim
11.05838372
vioscreen_protein
49.46947774
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.41120238
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
343.0
vioscreen_retinol
81.62026969
vioscreen_rgrain
1.145835563
vioscreen_ribofla
1.627479365
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8749
vioscreen_satoco
0.0
vioscreen_selenium
68.75342466
vioscreen_serine
2.090164477
vioscreen_sfa100
0.121780814
vioscreen_sfa120
0.136739736
vioscreen_sfa140
0.500054764
vioscreen_sfa160
6.4109595729999995
vioscreen_sfa170
0.042465752999999995
vioscreen_sfa180
1.824849168
vioscreen_sfa200
0.108739733
vioscreen_sfa220
0.066739728
vioscreen_sfa40
0.147287677
vioscreen_sfa60
0.086328763
vioscreen_sfa80
0.061726024000000004
vioscreen_sfatot
9.61605442
vioscreen_sodium
3124.005479
vioscreen_sorbitol
2.3186846169999997
vioscreen_srvid
20019.0
vioscreen_starch
68.93994542
vioscreen_started
6/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.51440764
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.012301369
vioscreen_tfa161t
0.013972604
vioscreen_tfa181t
0.949671246
vioscreen_tfa182t
0.147698619
vioscreen_tgrain
4.229698536
vioscreen_thiamin
1.217150795
vioscreen_threonin
1.869561684
vioscreen_time
34.0
vioscreen_totaltfa
1.240575419
vioscreen_totcla
0.023890412000000003
vioscreen_totfolat
432.6142551
vioscreen_totsugar
113.9143193
vioscreen_tryptoph
0.540493106
vioscreen_tyrosine
1.351863077
vioscreen_user_id
20019.0
vioscreen_v_drkgr
1.497479499
vioscreen_v_orange
1.704054741
vioscreen_v_other
0.923863074
vioscreen_v_potato
0.056027399000000006
vioscreen_v_starcy
0.09221917800000001
vioscreen_v_tomato
0.907561671
vioscreen_v_total
5.181178096
vioscreen_valine
2.176602633
vioscreen_veg5_day
10.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
10.4
vioscreen_visit
1.0
vioscreen_vita_iu
62607.61644
vioscreen_vita_rae
3198.460274
vioscreen_vita_re
6315.3
vioscreen_vitb12
1.7904928969999998
vioscreen_vitb6
2.535315109
vioscreen_vitc
246.56515409999997
vioscreen_vitd
2.083561644
vioscreen_vitd2
0.0
vioscreen_vitd3
2.083561644
vioscreen_vitd_iu
83.34246575
vioscreen_vite_iu
20.03407936
vioscreen_vitk
939.2046232999999
vioscreen_water
3087.866438
vioscreen_weight
Not provided
vioscreen_wgrain
3.0838629739999996
vioscreen_whole_grain_servings
3.3483300000000003
vioscreen_xylitol
0.070246574
vioscreen_zinc
8.673835483
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily