American Gut Project; 10317.000022910
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632573
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022910
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22910
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
30.41
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-23
collection month
January
collection season
Winter
collection time
06:40
collection_timestamp
2015-01-23 06:40
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
2.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
8e67380497fdcfe5d236b2024e63e021c70dc23ae7bdcb6a0a36cca5f187e1803ccae6cf659e5db155d4538636e010a8ba6b5ab23e0548cf8c2e9bc49867aa43
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
26.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Never
roommates
Three
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000022910
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
d822c036ce799b49
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.316218964
vioscreen_a_cal
416.90470889999995
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.195561323
vioscreen_addsugar
26.17191513
vioscreen_adsugtot
21.92051985
vioscreen_age
215.0
vioscreen_alanine
4.374848833
vioscreen_alcohol
48.91229666
vioscreen_alcohol_servings
3.3162199999999995
vioscreen_alphacar
2117.817637
vioscreen_alphtoce
13.26580694
vioscreen_alphtoco
11.23019183
vioscreen_arginine
5.406739953
vioscreen_ash
24.80767337
vioscreen_aspartam
15.97526086
vioscreen_aspartic
8.797892363999999
vioscreen_avcarb
215.8769264
vioscreen_bcodeid
Not provided
vioscreen_betacar
7029.699315000001
vioscreen_betacryp
122.56111940000001
vioscreen_betaine
201.5513699
vioscreen_betatoco
0.542246529
vioscreen_biochana
0.019534248
vioscreen_bmi
Not provided
vioscreen_caffeine
43.745564
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.12258
vioscreen_calcium_servings
2.82203
vioscreen_calories
2364.928082
vioscreen_carbo
244.6677226
vioscreen_cholest
285.8849957
vioscreen_choline
433.7230736000001
vioscreen_clac9t11
0.101315078
vioscreen_clat10c12
0.018493152
vioscreen_copper
1.8006856
vioscreen_coumest
0.082630142
vioscreen_cystine
1.247589195
vioscreen_d_cheese
0.844410852
vioscreen_d_milk
0.239972593
vioscreen_d_tot_soym
1.122575316
vioscreen_d_total
1.122575316
vioscreen_d_yogurt
0.032876712
vioscreen_daidzein
4.768740636
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.593644317
vioscreen_discfat_oil
31.06433273
vioscreen_discfat_sol
42.64070794
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001150685
vioscreen_f_citmlb
0.303671265
vioscreen_f_nj_citmlb
0.24816438899999999
vioscreen_f_nj_other
0.598602671
vioscreen_f_nj_total
0.8467944
vioscreen_f_other
0.598602671
vioscreen_f_total
0.90230136
vioscreen_fat
77.50646404
vioscreen_fiber
28.78507063
vioscreen_fibh2o
7.385889341
vioscreen_fibinso
21.48999893
vioscreen_finished
1/22/15
vioscreen_fish_servings
5.42481
vioscreen_fol_deqv
593.6246575
vioscreen_fol_nat
361.4400685
vioscreen_fol_syn
136.511387
vioscreen_formontn
0.002082192
vioscreen_fried_fish_servings
1.58808
vioscreen_fried_food_servings
0.38721
vioscreen_frt5_day
1.1
vioscreen_frtsumm
1.8
vioscreen_fructose
16.11619087
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
5.419068386
vioscreen_g_total
6.448986649
vioscreen_g_whl
1.029945185
vioscreen_galactos
0.316657539
vioscreen_gammtoco
17.83660237
vioscreen_gender
false
vioscreen_genistn
6.784468642999999
vioscreen_glac
98.85575771
vioscreen_gltc
110.2351241
vioscreen_glucose
17.55603061
vioscreen_glutamic
19.80444135
vioscreen_glycine
3.774136812
vioscreen_glycitn
1.503506595
vioscreen_grams
2799.841096
vioscreen_hei2010_dairy
3.7
vioscreen_hei2010_empty_calories
13.9
vioscreen_hei2010_fatty_acids
5.7
vioscreen_hei2010_fruit
2.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.0
vioscreen_hei2010_score
61.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.5
vioscreen_hei2010_whole_grains
2.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.4
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.7
vioscreen_hei_non_juice_frt
4.5
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.6
vioscreen_hei_score
63.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
8.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.5
vioscreen_height
Not provided
vioscreen_histidin
2.429616933
vioscreen_inositol
0.280794494
vioscreen_iron
16.48123127
vioscreen_isoleuc
4.164246107
vioscreen_isomalt
0.0
vioscreen_joules
9894.85411
vioscreen_juice_servings
0.11101
vioscreen_lactitol
0.0
vioscreen_lactose
4.79723285
vioscreen_legumes
0.390657524
vioscreen_leucine
7.269974048
vioscreen_line_gi
522.2646831999999
vioscreen_low_fat_dairy_serving
0.18633
vioscreen_lutzeax
4418.799315
vioscreen_lycopene
14767.090409999999
vioscreen_lysine
5.900109027
vioscreen_m_egg
0.666602691
vioscreen_m_fish_hi
0.9576711990000001
vioscreen_m_fish_lo
2.151013685
vioscreen_m_frank
0.080027395
vioscreen_m_meat
0.316904105
vioscreen_m_mpf
3.672684677
vioscreen_m_nutsd
0.319369862
vioscreen_m_organ
0.0
vioscreen_m_poult
0.16715068
vioscreen_m_soy
2.474082132
vioscreen_magnes
376.2242295
vioscreen_maltitol
0.0
vioscreen_maltose
3.216684838
vioscreen_mangan
4.246577349
vioscreen_mannitol
0.485205496
vioscreen_methhis3
10.94298547
vioscreen_methion
1.9666848380000002
vioscreen_mfa141
0.05134247
vioscreen_mfa161
0.93706849
vioscreen_mfa181
25.721885699999998
vioscreen_mfa201
0.313534253
vioscreen_mfa221
0.128520537
vioscreen_mfatot
27.38153628
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.23019183
vioscreen_nccglbr
167.1574593
vioscreen_nccglgr
116.9304045
vioscreen_niacin
22.10410825
vioscreen_niacineq
40.63699165
vioscreen_nitrogen
15.78668664
vioscreen_non_fried_fish_servings
3.83673
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.342082486
vioscreen_oxalic
251.9059289
vioscreen_oxalicm
271.9119221
vioscreen_pantothe
4.800193306000001
vioscreen_pectins
4.11087797
vioscreen_pfa182
16.62375321
vioscreen_pfa183
1.780493499
vioscreen_pfa184
0.034027395
vioscreen_pfa204
0.10687671800000001
vioscreen_pfa205
0.15854791099999999
vioscreen_pfa225
0.048383561
vioscreen_pfa226
0.322273965
vioscreen_pfatot
19.18449406
vioscreen_phenylal
4.303260782
vioscreen_phosphor
1486.474829
vioscreen_phytic
1021.425771
vioscreen_pinitol
0.065999995
vioscreen_potass
3373.0328770000006
vioscreen_procdate
10/28/15
vioscreen_proline
6.209150257
vioscreen_protanim
43.65956764
vioscreen_protein
96.88872003
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
53.22966075
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
599.0
vioscreen_retinol
311.4227312
vioscreen_rgrain
5.501260836
vioscreen_ribofla
1.740109796
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.76425
vioscreen_satoco
0.0
vioscreen_selenium
145.52705480000003
vioscreen_serine
4.490630685
vioscreen_sfa100
0.519479454
vioscreen_sfa120
0.638082175
vioscreen_sfa140
2.282602974
vioscreen_sfa160
13.11824433
vioscreen_sfa170
0.12893149
vioscreen_sfa180
5.3143832269999995
vioscreen_sfa200
0.17353423699999998
vioscreen_sfa220
0.124493157
vioscreen_sfa40
0.678931458
vioscreen_sfa60
0.344109585
vioscreen_sfa80
0.267013717
vioscreen_sfatot
24.01783765
vioscreen_sodium
5015.533219
vioscreen_sorbitol
0.43989036200000003
vioscreen_srvid
16961.0
vioscreen_starch
115.37970890000001
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.56468322
vioscreen_sweet_servings
0.52603
vioscreen_tagatose
0.6779726209999999
vioscreen_tfa161t
0.029068497000000002
vioscreen_tfa181t
1.970547945
vioscreen_tfa182t
0.359424664
vioscreen_tgrain
7.000273571
vioscreen_thiamin
2.48616425
vioscreen_threonin
3.6070406139999998
vioscreen_time
26.0
vioscreen_totaltfa
2.4355346680000003
vioscreen_totcla
0.121095903
vioscreen_totfolat
497.9513699
vioscreen_totsugar
64.66081443
vioscreen_tryptoph
1.11246572
vioscreen_tyrosine
3.1492876439999997
vioscreen_user_id
16961.0
vioscreen_v_drkgr
0.34331508299999997
vioscreen_v_orange
0.37375342
vioscreen_v_other
0.9713972540000001
vioscreen_v_potato
0.505342457
vioscreen_v_starcy
0.48775338
vioscreen_v_tomato
0.631123248
vioscreen_v_total
3.312630431
vioscreen_valine
4.726548788000001
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.6
vioscreen_visit
1.0
vioscreen_vita_iu
14620.75753
vioscreen_vita_rae
990.5809932
vioscreen_vita_re
1669.738527
vioscreen_vitb12
5.567644344
vioscreen_vitb6
2.315698911
vioscreen_vitc
118.62844609999999
vioscreen_vitd
7.11687714
vioscreen_vitd2
0.002849315
vioscreen_vitd3
7.11410999
vioscreen_vitd_iu
284.6750856
vioscreen_vite_iu
16.74813651
vioscreen_vitk
196.7869221
vioscreen_water
2340.293493
vioscreen_weight
Not provided
vioscreen_wgrain
1.4990682519999998
vioscreen_whole_grain_servings
1.02995
vioscreen_xylitol
0.033890413
vioscreen_zinc
12.47145494
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
90.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never