American Gut Project; 10317.000026661
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633465
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026661
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26661
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
22.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/07/2015
collection month
June
collection season
Summer
collection time
18:30
collection_timestamp
2015-06-07 18:30
consume_animal_products_abx
No
contraceptive
Not provided
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
299.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
cc4d644ca0cc3a1fa44622e20c9a8b8aa1048bddfa8840b4d617679a071f81fce869e5645680e4b2bdaf2120fef9f56203980c6f2f977de3a9a1989f2703496a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.3
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-118.7
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Yes
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026661
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
d04fcaa57f2cfacb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.34090411
vioscreen_a_cal
42.54227312
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.978493218
vioscreen_addsugar
4.88030153
vioscreen_adsugtot
4.497068306
vioscreen_age
215.0
vioscreen_alanine
1.2569861009999999
vioscreen_alcohol
5.328794547
vioscreen_alcohol_servings
0.3409
vioscreen_alphacar
1551.468836
vioscreen_alphtoce
11.41087596
vioscreen_alphtoco
10.85876699
vioscreen_arginine
1.6987946809999999
vioscreen_ash
12.77501204
vioscreen_aspartam
23.190766800000002
vioscreen_aspartic
2.88364425
vioscreen_avcarb
81.03102526
vioscreen_bcodeid
Not provided
vioscreen_betacar
16670.4137
vioscreen_betacryp
219.4258776
vioscreen_betaine
55.44307577
vioscreen_betatoco
0.204273987
vioscreen_biochana
0.008246575
vioscreen_bmi
Not provided
vioscreen_caffeine
34.8718643
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.02636
vioscreen_calcium_servings
1.49214
vioscreen_calories
865.2044521
vioscreen_carbo
101.0307898
vioscreen_cholest
94.28726456
vioscreen_choline
187.71380569999997
vioscreen_clac9t11
0.0019178079999999998
vioscreen_clat10c12
0.001780822
vioscreen_copper
1.101643685
vioscreen_coumest
0.0031232879999999997
vioscreen_cystine
0.33589038600000004
vioscreen_d_cheese
0.000410959
vioscreen_d_milk
0.025945204
vioscreen_d_tot_soym
0.026356163999999998
vioscreen_d_total
0.026356163999999998
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.023068493
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.6717260490000001
vioscreen_discfat_oil
29.90619917
vioscreen_discfat_sol
3.7469589439999997
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002191781
vioscreen_f_citmlb
0.697479457
vioscreen_f_nj_citmlb
0.62816438
vioscreen_f_nj_other
1.026493104
vioscreen_f_nj_total
1.654684824
vioscreen_f_other
1.169369799
vioscreen_f_total
1.86690423
vioscreen_fat
41.94002033
vioscreen_fiber
20.00033043
vioscreen_fibh2o
4.746576011
vioscreen_fibinso
15.27123288
vioscreen_finished
4/9/15
vioscreen_fish_servings
1.1117299999999999
vioscreen_fol_deqv
328.73011560000003
vioscreen_fol_nat
319.61917810000006
vioscreen_fol_syn
5.358849262
vioscreen_formontn
0.004438356
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
2.3
vioscreen_frtsumm
3.7
vioscreen_fructose
17.91712329
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.19106848699999998
vioscreen_g_total
0.278876736
vioscreen_g_whl
0.087808217
vioscreen_galactos
0.080465761
vioscreen_gammtoco
4.6297527160000005
vioscreen_gender
false
vioscreen_genistn
0.033315073
vioscreen_glac
33.47961794
vioscreen_gltc
38.09651916
vioscreen_glucose
16.48638431
vioscreen_glutamic
4.2985756230000005
vioscreen_glycine
1.112027354
vioscreen_glycitn
0.003287671
vioscreen_grams
3637.2578770000005
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.8
vioscreen_hei_score
71.7
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
0.600630125
vioscreen_inositol
0.10164383099999999
vioscreen_iron
6.633807122
vioscreen_isoleuc
0.996027447
vioscreen_isomalt
0.0
vioscreen_joules
3620.0143840000005
vioscreen_juice_servings
0.42444
vioscreen_lactitol
0.0
vioscreen_lactose
0.307506823
vioscreen_legumes
0.052712327999999996
vioscreen_leucine
1.646794567
vioscreen_line_gi
204.77095459999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19768.02603
vioscreen_lycopene
5070.579795000001
vioscreen_lysine
1.446191908
vioscreen_m_egg
0.510136978
vioscreen_m_fish_hi
0.16197260000000002
vioscreen_m_fish_lo
0.471506866
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.633452031
vioscreen_m_nutsd
1.095534233
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.000876712
vioscreen_magnes
250.88169950000002
vioscreen_maltitol
0.0
vioscreen_maltose
0.647452075
vioscreen_mangan
2.658657126
vioscreen_mannitol
0.287397244
vioscreen_methhis3
1.828219145
vioscreen_methion
0.45580816399999996
vioscreen_mfa141
0.003178082
vioscreen_mfa161
0.432164273
vioscreen_mfa181
21.11013752
vioscreen_mfa201
0.23279452399999997
vioscreen_mfa221
0.024520547
vioscreen_mfatot
21.84840941
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
10.85876699
vioscreen_nccglbr
59.99365368
vioscreen_nccglgr
41.9615609
vioscreen_niacin
7.732191781
vioscreen_niacineq
12.67695714
vioscreen_nitrogen
4.118383455
vioscreen_non_fried_fish_servings
1.1117299999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.2653972470000001
vioscreen_oxalic
498.46279969999995
vioscreen_oxalicm
529.432363
vioscreen_pantothe
2.617479465
vioscreen_pectins
5.328302587
vioscreen_pfa182
8.915341396
vioscreen_pfa183
1.200356094
vioscreen_pfa184
0.002054795
vioscreen_pfa204
0.038493149
vioscreen_pfa205
0.015232878
vioscreen_pfa225
0.004109589
vioscreen_pfa226
0.043780821
vioscreen_pfatot
10.24427306
vioscreen_phenylal
1.105452112
vioscreen_phosphor
448.55346749999995
vioscreen_phytic
273.85667810000007
vioscreen_pinitol
0.000328767
vioscreen_potass
2514.151027
vioscreen_procdate
10/28/15
vioscreen_proline
1.112602756
vioscreen_protanim
7.818246335
vioscreen_protein
25.11369863
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.2964108
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
489.0
vioscreen_retinol
46.65309825
vioscreen_rgrain
0.16158904
vioscreen_ribofla
0.745780882
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.0897799999999997
vioscreen_satoco
0.0
vioscreen_selenium
35.45934289
vioscreen_serine
1.217452041
vioscreen_sfa100
0.009917809
vioscreen_sfa120
0.03649315
vioscreen_sfa140
0.09095890599999999
vioscreen_sfa160
4.966219298
vioscreen_sfa170
0.015534245
vioscreen_sfa180
1.388274143
vioscreen_sfa200
0.178410966
vioscreen_sfa220
0.216821937
vioscreen_sfa40
0.008958904
vioscreen_sfa60
0.0032328770000000003
vioscreen_sfa80
0.0047945209999999995
vioscreen_sfatot
7.0037805010000005
vioscreen_sodium
1640.939041
vioscreen_sorbitol
0.480520546
vioscreen_srvid
18480.0
vioscreen_starch
19.78766722
vioscreen_started
4/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.88093295
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
0.210246569
vioscreen_tfa161t
0.003890411
vioscreen_tfa181t
0.218547957
vioscreen_tfa182t
0.09021917900000001
vioscreen_tgrain
0.24936985399999997
vioscreen_thiamin
0.577588978
vioscreen_threonin
0.971315065
vioscreen_time
23.0
vioscreen_totaltfa
0.310739742
vioscreen_totcla
0.0038356159999999996
vioscreen_totfolat
324.9780394
vioscreen_totsugar
49.98841503
vioscreen_tryptoph
0.297095897
vioscreen_tyrosine
0.788547882
vioscreen_user_id
18480.0
vioscreen_v_drkgr
1.440438383
vioscreen_v_orange
0.361150705
vioscreen_v_other
1.40627408
vioscreen_v_potato
0.19860273399999998
vioscreen_v_starcy
0.052958904
vioscreen_v_tomato
0.48920547299999995
vioscreen_v_total
3.948767592
vioscreen_valine
1.178876652
vioscreen_veg5_day
7.7
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.9
vioscreen_visit
1.0
vioscreen_vita_iu
29415.31233
vioscreen_vita_rae
1509.641781
vioscreen_vita_re
2972.629452
vioscreen_vitb12
0.677780862
vioscreen_vitb6
1.375479586
vioscreen_vitc
168.0563998
vioscreen_vitd
1.656904163
vioscreen_vitd2
0.000191781
vioscreen_vitd3
1.656739619
vioscreen_vitd_iu
66.27616652
vioscreen_vite_iu
16.19863014
vioscreen_vitk
864.5333903999999
vioscreen_water
3456.944178
vioscreen_weight
Not provided
vioscreen_wgrain
0.08778082400000001
vioscreen_whole_grain_servings
0.08781
vioscreen_xylitol
0.032931512999999996
vioscreen_zinc
3.5864662480000002
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)