American Gut Project; 10317.000022675
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633040
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022675
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22675
antibiotic_history
Not provided
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
30.91
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-19
collection month
May
collection season
Spring
collection time
10:10
collection_timestamp
2015-05-19 10:10
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
168.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
8f495727b991997614d40bf714f5df7224717c1a5998b1899101dd8f9e59c3aa238a51ecb983426fb8efaa05191ae3db5f7339fafeac59d4c208fd8391e130ab
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-89.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022675
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
2f1328c12b690a2f
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.476383575
vioscreen_a_cal
181.0683861
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.79863014
vioscreen_addsugar
52.69654324
vioscreen_adsugtot
45.61142444
vioscreen_age
215.0
vioscreen_alanine
2.63934276
vioscreen_alcohol
22.62871361
vioscreen_alcohol_servings
1.47638
vioscreen_alphacar
6479.715753
vioscreen_alphtoce
11.81849716
vioscreen_alphtoco
10.9119455
vioscreen_arginine
2.820931213
vioscreen_ash
27.16435681
vioscreen_aspartam
15.97526086
vioscreen_aspartic
5.776108332000001
vioscreen_avcarb
236.2285103
vioscreen_bcodeid
Not provided
vioscreen_betacar
22975.40685
vioscreen_betacryp
379.430351
vioscreen_betaine
370.2447774
vioscreen_betatoco
0.399862964
vioscreen_biochana
0.01769863
vioscreen_bmi
Not provided
vioscreen_caffeine
559.2194777000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.13099
vioscreen_calcium_servings
4.17066
vioscreen_calories
1775.3928079999998
vioscreen_carbo
274.00310360000003
vioscreen_cholest
65.68216503
vioscreen_choline
300.0456764
vioscreen_clac9t11
0.043589043
vioscreen_clat10c12
0.0051780820000000005
vioscreen_copper
1.793589469
vioscreen_coumest
0.194986296
vioscreen_cystine
0.856411032
vioscreen_d_cheese
0.40460272
vioscreen_d_milk
1.227013742
vioscreen_d_tot_soym
2.130986295
vioscreen_d_total
2.130986295
vioscreen_d_yogurt
0.49843833600000004
vioscreen_daidzein
1.043698664
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.189369682
vioscreen_discfat_oil
15.296301099999999
vioscreen_discfat_sol
14.69608439
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001342466
vioscreen_f_citmlb
1.291972623
vioscreen_f_nj_citmlb
1.290685032
vioscreen_f_nj_other
0.7701096629999999
vioscreen_f_nj_total
2.060849375
vioscreen_f_other
0.772411022
vioscreen_f_total
2.0644385769999998
vioscreen_fat
36.239455799999995
vioscreen_fiber
37.77430437
vioscreen_fibh2o
10.684385699999998
vioscreen_fibinso
27.11274347
vioscreen_finished
5/19/15
vioscreen_fish_servings
0.54115
vioscreen_fol_deqv
593.1007277000001
vioscreen_fol_nat
506.67029110000004
vioscreen_fol_syn
50.82163956
vioscreen_formontn
0.0037534240000000004
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.1
vioscreen_fructose
34.08356164
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.8113973540000001
vioscreen_g_total
5.979670777999999
vioscreen_g_whl
4.168274093
vioscreen_galactos
1.095972599
vioscreen_gammtoco
7.37753438
vioscreen_gender
false
vioscreen_genistn
1.10249291
vioscreen_glac
93.7828339
vioscreen_gltc
106.5040561
vioscreen_glucose
32.03640839
vioscreen_glutamic
13.80800112
vioscreen_glycine
2.121095422
vioscreen_glycitn
0.41183563700000003
vioscreen_grams
5553.038014
vioscreen_hei2010_dairy
9.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.7
vioscreen_hei2010_sea_foods_plant_protiens
3.1
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
4.1
vioscreen_hei_milk
9.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
75.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
14.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.578410946
vioscreen_inositol
0.26060274699999997
vioscreen_iron
12.84059958
vioscreen_isoleuc
2.746054788
vioscreen_isomalt
0.0
vioscreen_joules
7428.24589
vioscreen_juice_servings
0.007209999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
22.88298641
vioscreen_legumes
0.057123289
vioscreen_leucine
4.6807941589999995
vioscreen_line_gi
541.813613
vioscreen_low_fat_dairy_serving
1.01121
vioscreen_lutzeax
13653.142469999999
vioscreen_lycopene
15302.08493
vioscreen_lysine
3.812301343
vioscreen_m_egg
0.165342472
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.235506847
vioscreen_m_frank
0.006164384
vioscreen_m_meat
0.23778082399999997
vioscreen_m_mpf
1.106027514
vioscreen_m_nutsd
0.170821914
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5475616870000001
vioscreen_m_soy
0.165972608
vioscreen_magnes
484.4778682
vioscreen_maltitol
0.0
vioscreen_maltose
5.616439025
vioscreen_mangan
9.524933112000001
vioscreen_mannitol
0.7992329640000001
vioscreen_methhis3
4.363918022
vioscreen_methion
1.244274066
vioscreen_mfa141
0.047835614000000005
vioscreen_mfa161
0.42128768299999997
vioscreen_mfa181
12.916712599999999
vioscreen_mfa201
0.10347946400000001
vioscreen_mfa221
0.01271233
vioscreen_mfatot
13.61268595
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.9119455
vioscreen_nccglbr
185.5401327
vioscreen_nccglgr
129.7730094
vioscreen_niacin
19.176491600000002
vioscreen_niacineq
31.33635221
vioscreen_nitrogen
11.28071356
vioscreen_non_fried_fish_servings
0.54115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.252246345
vioscreen_oxalic
537.1332620000001
vioscreen_oxalicm
538.6090753
vioscreen_pantothe
7.131780421
vioscreen_pectins
6.549699674
vioscreen_pfa182
7.4515364139999996
vioscreen_pfa183
1.205588897
vioscreen_pfa184
0.0009315069999999999
vioscreen_pfa204
0.02452055
vioscreen_pfa205
0.012630137
vioscreen_pfa225
0.007150685
vioscreen_pfa226
0.026876712999999997
vioscreen_pfatot
8.768768729
vioscreen_phenylal
2.823698363
vioscreen_phosphor
1389.108219
vioscreen_phytic
855.1095034
vioscreen_pinitol
0.026219177000000003
vioscreen_potass
5348.594178
vioscreen_procdate
10/28/15
vioscreen_proline
4.672492709
vioscreen_protanim
30.81871254
vioscreen_protein
69.15566674
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.3320259
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
436.0
vioscreen_retinol
224.037286
vioscreen_rgrain
2.363041123
vioscreen_ribofla
2.6215342059999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.42836
vioscreen_satoco
0.0
vioscreen_selenium
110.67445420000001
vioscreen_serine
2.9305202539999997
vioscreen_sfa100
0.20230136
vioscreen_sfa120
0.248794535
vioscreen_sfa140
0.8762739629999999
vioscreen_sfa160
6.059944884
vioscreen_sfa170
0.042410962999999996
vioscreen_sfa180
2.03243843
vioscreen_sfa200
0.076273963
vioscreen_sfa220
0.060794527
vioscreen_sfa40
0.307424676
vioscreen_sfa60
0.137616448
vioscreen_sfa80
0.102136983
vioscreen_sfatot
10.38841235
vioscreen_sodium
4154.478425
vioscreen_sorbitol
0.455561682
vioscreen_srvid
18724.0
vioscreen_starch
73.96396083
vioscreen_started
5/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
35.64333797
vioscreen_sweet_servings
0.01095
vioscreen_tagatose
3.650876565
vioscreen_tfa161t
0.006164384
vioscreen_tfa181t
1.0206849820000001
vioscreen_tfa182t
0.165972587
vioscreen_tgrain
5.745315176
vioscreen_thiamin
1.687424751
vioscreen_threonin
2.498055069
vioscreen_time
151.0
vioscreen_totaltfa
1.4616436680000002
vioscreen_totcla
0.048328771
vioscreen_totfolat
557.4919521
vioscreen_totsugar
133.6285959
vioscreen_tryptoph
0.729972609
vioscreen_tyrosine
2.197178002
vioscreen_user_id
18724.0
vioscreen_v_drkgr
0.966575393
vioscreen_v_orange
1.202821914
vioscreen_v_other
2.332767183
vioscreen_v_potato
0.39613697600000003
vioscreen_v_starcy
0.08041096
vioscreen_v_tomato
1.0482738759999999
vioscreen_v_total
6.02712302
vioscreen_valine
3.2981923560000004
vioscreen_veg5_day
10.5
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
12.0
vioscreen_visit
1.0
vioscreen_vita_iu
44755.77534
vioscreen_vita_rae
2424.453253
vioscreen_vita_re
4624.868493
vioscreen_vitb12
3.0317262410000003
vioscreen_vitb6
2.265479686
vioscreen_vitc
263.2105094
vioscreen_vitd
4.443397167
vioscreen_vitd2
0.000383562
vioscreen_vitd3
4.443013898999999
vioscreen_vitd_iu
177.73588669999998
vioscreen_vite_iu
16.23337168
vioscreen_vitk
540.9238442000001
vioscreen_water
5125.752055
vioscreen_weight
Not provided
vioscreen_wgrain
3.382274053
vioscreen_whole_grain_servings
4.16827
vioscreen_xylitol
0.077260276
vioscreen_zinc
9.952464817000001
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily