American Gut Project; 10317.000017318
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632905
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000017318
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
17318
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
23.74
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
11/12/2014
collection month
November
collection season
Fall
collection time
07:30
collection_timestamp
2014-11-12 07:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
211.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Month
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
193.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f3a9f0e5a80bc0ad2c178f16085f57ef623eb121480e96b7040479f68108981a11a1d97c7052c07f8011b16eeed5fe106e776950e8eee635d66196fb3750de39
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-83.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000017318
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
GA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
d51e31e02f53f1c4
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.875452162
vioscreen_a_cal
609.7260274
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.885917434
vioscreen_addsugar
29.18742509
vioscreen_adsugtot
27.48832941
vioscreen_age
214.0
vioscreen_alanine
5.187917715
vioscreen_alcohol
72.89852312
vioscreen_alcohol_servings
4.87545
vioscreen_alphacar
362.6557791
vioscreen_alphtoce
19.17353248
vioscreen_alphtoco
17.13021993
vioscreen_arginine
7.081261371
vioscreen_ash
26.56706978
vioscreen_aspartam
0.0
vioscreen_aspartic
10.66024521
vioscreen_avcarb
191.2052654
vioscreen_bcodeid
Not provided
vioscreen_betacar
7614.3630140000005
vioscreen_betacryp
78.54509311
vioscreen_betaine
131.0409996
vioscreen_betatoco
0.687123296
vioscreen_biochana
0.006767123000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
431.79118150000005
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.2277
vioscreen_calcium_servings
3.66945
vioscreen_calories
3102.0431510000003
vioscreen_carbo
219.2899401
vioscreen_cholest
567.7844606000001
vioscreen_choline
668.2680651000001
vioscreen_clac9t11
0.236630145
vioscreen_clat10c12
0.060301376
vioscreen_copper
2.148712576
vioscreen_coumest
0.380109604
vioscreen_cystine
1.3730957030000002
vioscreen_d_cheese
0.747863017
vioscreen_d_milk
0.47816438
vioscreen_d_tot_soym
1.22769859
vioscreen_d_total
1.22769859
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.497123279
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.304218951
vioscreen_discfat_oil
42.63191888
vioscreen_discfat_sol
69.10287885
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
0.673068488
vioscreen_f_nj_citmlb
0.16364383400000002
vioscreen_f_nj_other
0.519671213
vioscreen_f_nj_total
0.6833150370000001
vioscreen_f_other
0.519671213
vioscreen_f_total
1.192739743
vioscreen_fat
150.35941780000002
vioscreen_fiber
28.01369596
vioscreen_fibh2o
10.15575369
vioscreen_fibinso
17.95306881
vioscreen_finished
11/13/14
vioscreen_fish_servings
1.60808
vioscreen_fol_deqv
543.9853596
vioscreen_fol_nat
367.4978596
vioscreen_fol_syn
103.7815497
vioscreen_formontn
0.004493151
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.7
vioscreen_frtsumm
2.4
vioscreen_fructose
12.56388993
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.8561918080000002
vioscreen_g_total
3.415671153
vioscreen_g_whl
1.559479345
vioscreen_galactos
0.103972605
vioscreen_gammtoco
17.195836899999996
vioscreen_gender
false
vioscreen_genistn
0.402630114
vioscreen_glac
94.54660745
vioscreen_gltc
103.2072881
vioscreen_glucose
15.25191834
vioscreen_glutamic
20.23849262
vioscreen_glycine
4.864821343
vioscreen_glycitn
0.042164385
vioscreen_grams
3796.6568490000004
vioscreen_hei2010_dairy
3.0
vioscreen_hei2010_empty_calories
10.5
vioscreen_hei2010_fatty_acids
3.1
vioscreen_hei2010_fruit
2.4
vioscreen_hei2010_greens_beans
4.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.2
vioscreen_hei2010_veg
3.4
vioscreen_hei2010_whole_fruit
2.8
vioscreen_hei2010_whole_grains
3.4
vioscreen_hei_drk_g_org_veg_leg
3.5
vioscreen_hei_fruit
2.4
vioscreen_hei_grains
1.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.0
vioscreen_hei_non_juice_frt
2.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
49.9
vioscreen_hei_sodium
6.6
vioscreen_hei_sol_fat_alc_add_sug
4.7
vioscreen_hei_veg
3.4
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
3.047945205
vioscreen_inositol
0.424849335
vioscreen_iron
17.15559049
vioscreen_isoleuc
4.734574326000001
vioscreen_isomalt
0.0
vioscreen_joules
12978.95205
vioscreen_juice_servings
1.0189
vioscreen_lactitol
0.0
vioscreen_lactose
8.290766802
vioscreen_legumes
0.022849315
vioscreen_leucine
8.379150391
vioscreen_line_gi
507.4574058
vioscreen_low_fat_dairy_serving
0.15704
vioscreen_lutzeax
6305.365068
vioscreen_lycopene
2067.598459
vioscreen_lysine
7.138685252999999
vioscreen_m_egg
1.589287745
vioscreen_m_fish_hi
0.9163835920000001
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.277041103
vioscreen_m_meat
3.547067971
vioscreen_m_mpf
5.346958275
vioscreen_m_nutsd
5.30583563
vioscreen_m_organ
0.135369863
vioscreen_m_poult
0.471095882
vioscreen_m_soy
0.012054795
vioscreen_magnes
520.847988
vioscreen_maltitol
0.0
vioscreen_maltose
2.718355863
vioscreen_mangan
5.394410852
vioscreen_mannitol
0.130301363
vioscreen_methhis3
20.20306881
vioscreen_methion
2.378329008
vioscreen_mfa141
0.20372602899999998
vioscreen_mfa161
2.229945185
vioscreen_mfa181
53.43267337
vioscreen_mfa201
0.786958877
vioscreen_mfa221
0.193452056
vioscreen_mfatot
57.33766588
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
17.11547919
vioscreen_nccglbr
132.4521083
vioscreen_nccglgr
92.65500856
vioscreen_niacin
33.48797089
vioscreen_niacineq
53.38939962
vioscreen_nitrogen
18.29098619
vioscreen_non_fried_fish_servings
1.60808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.336849349
vioscreen_oxalic
411.84511989999993
vioscreen_oxalicm
486.155351
vioscreen_pantothe
9.427809288999999
vioscreen_pectins
4.3785480660000005
vioscreen_pfa182
24.91112479
vioscreen_pfa183
1.8318083459999999
vioscreen_pfa184
0.041835618
vioscreen_pfa204
0.23230135100000002
vioscreen_pfa205
0.129972599
vioscreen_pfa225
0.052821925
vioscreen_pfa226
0.280657541
vioscreen_pfatot
27.63819563
vioscreen_phenylal
4.8958358969999995
vioscreen_phosphor
1883.621747
vioscreen_phytic
1035.703767
vioscreen_pinitol
0.0000822
vioscreen_potass
4404.472603
vioscreen_procdate
10/28/15
vioscreen_proline
6.713260515
vioscreen_protanim
70.30577911
vioscreen_protein
110.7234482
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
40.41819349
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
758.0
vioscreen_retinol
818.1315068
vioscreen_rgrain
2.022191714
vioscreen_ribofla
3.0594248310000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.5806
vioscreen_satoco
0.032328768
vioscreen_selenium
176.4438356
vioscreen_serine
5.413369876
vioscreen_sfa100
1.10002734
vioscreen_sfa120
1.25860278
vioscreen_sfa140
4.7929312930000005
vioscreen_sfa160
28.04931774
vioscreen_sfa170
0.199013739
vioscreen_sfa180
12.87698657
vioscreen_sfa200
0.48063020100000003
vioscreen_sfa220
0.84093143
vioscreen_sfa40
1.3494520209999998
vioscreen_sfa60
0.7591232509999999
vioscreen_sfa80
0.507479482
vioscreen_sfatot
53.05813891
vioscreen_sodium
3907.296233
vioscreen_sorbitol
0.6632328820000001
vioscreen_srvid
14539.0
vioscreen_starch
75.33923373
vioscreen_started
11/13/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.18432684
vioscreen_sweet_servings
0.78356
vioscreen_tagatose
3.56616445
vioscreen_tfa161t
0.14424658
vioscreen_tfa181t
2.562904504
vioscreen_tfa182t
0.631753415
vioscreen_tgrain
4.032822199
vioscreen_thiamin
1.77769859
vioscreen_threonin
4.132493779
vioscreen_time
45.0
vioscreen_totaltfa
3.40819142
vioscreen_totcla
0.296000003
vioscreen_totfolat
471.27880989999994
vioscreen_totsugar
70.60008562
vioscreen_tryptoph
1.194191878
vioscreen_tyrosine
3.889177882
vioscreen_user_id
14539.0
vioscreen_v_drkgr
0.584027392
vioscreen_v_orange
0.25035615699999997
vioscreen_v_other
0.65660275
vioscreen_v_potato
0.6335890679999999
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.179863018
vioscreen_v_total
2.30460272
vioscreen_valine
5.486602700000001
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
15785.964380000001
vioscreen_vita_rae
1471.045377
vioscreen_vita_re
2123.95976
vioscreen_vitb12
7.4963552810000005
vioscreen_vitb6
2.884054607
vioscreen_vitc
117.13884850000001
vioscreen_vitd
9.265041069
vioscreen_vitd2
0.0
vioscreen_vitd3
9.265041069
vioscreen_vitd_iu
370.60164280000004
vioscreen_vite_iu
25.52430437
vioscreen_vitk
303.32654110000004
vioscreen_water
3234.763014
vioscreen_weight
Not provided
vioscreen_wgrain
2.01063015
vioscreen_whole_grain_servings
1.55948
vioscreen_xylitol
0.065506849
vioscreen_zinc
15.83235499
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
88.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)