American Gut Project; 10317.000030165
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634139
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030165
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030165
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
22.35
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-08-24
collection month
August
collection season
Summer
collection time
12:00
collection_timestamp
2015-08-24 12:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
46.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
195.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
233c3b276e74123812336c41524f161315f62f9d51aa81a9b50b3cda71d6df2d9cc0b970d5ef5081ebc1af8baa04ddb448d1c459399f839b89580cd6815e6f5f
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030165
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
285df2929a6ca84c
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.119123318
vioscreen_a_cal
147.1735017
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.5201646779999995
vioscreen_addsugar
40.8562714
vioscreen_adsugtot
35.03728863
vioscreen_age
215.0
vioscreen_alanine
5.6743284460000005
vioscreen_alcohol
16.57662939
vioscreen_alcohol_servings
1.1191200000000001
vioscreen_alphacar
1253.155565
vioscreen_alphtoce
13.88249278
vioscreen_alphtoco
12.37304019
vioscreen_arginine
6.842822266000001
vioscreen_ash
25.72569831
vioscreen_aspartam
0.0
vioscreen_aspartic
10.76440965
vioscreen_avcarb
285.3557363
vioscreen_bcodeid
Not provided
vioscreen_betacar
13328.91644
vioscreen_betacryp
275.798994
vioscreen_betaine
276.0898116
vioscreen_betatoco
0.439890404
vioscreen_biochana
0.011945205
vioscreen_bmi
Not provided
vioscreen_caffeine
343.8132705
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
2.1261900000000002
vioscreen_calcium_servings
4.67548
vioscreen_calories
2544.2837329999998
vioscreen_carbo
317.814619
vioscreen_cholest
484.2862158
vioscreen_choline
582.8378852999999
vioscreen_clac9t11
0.113808232
vioscreen_clat10c12
0.021808222000000002
vioscreen_copper
2.1122740859999998
vioscreen_coumest
0.080328766
vioscreen_cystine
1.541041377
vioscreen_d_cheese
0.552082135
vioscreen_d_milk
1.355534384
vioscreen_d_tot_soym
2.126191774
vioscreen_d_total
2.126191774
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
1.457616351
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.682822199
vioscreen_discfat_oil
24.40471158
vioscreen_discfat_sol
40.26416685
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00109589
vioscreen_f_citmlb
0.30794525100000003
vioscreen_f_nj_citmlb
0.30276712899999997
vioscreen_f_nj_other
1.255397347
vioscreen_f_nj_total
1.5581915869999998
vioscreen_f_other
1.255397347
vioscreen_f_total
1.563342285
vioscreen_fat
84.35685467
vioscreen_fiber
32.0652531
vioscreen_fibh2o
8.919616866
vioscreen_fibinso
23.21120505
vioscreen_finished
8/6/15
vioscreen_fish_servings
5.59923
vioscreen_fol_deqv
1105.1564210000001
vioscreen_fol_nat
408.3878425
vioscreen_fol_syn
409.80672089999996
vioscreen_formontn
0.001808219
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.24475
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
23.12821864
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
5.041423975
vioscreen_g_total
8.344246977000001
vioscreen_g_whl
3.3028490880000003
vioscreen_galactos
0.51961649
vioscreen_gammtoco
12.10457513
vioscreen_gender
false
vioscreen_genistn
2.067835643
vioscreen_glac
159.48534890000002
vioscreen_gltc
175.51703769999997
vioscreen_glucose
24.48638699
vioscreen_glutamic
22.01635542
vioscreen_glycine
4.9840556110000005
vioscreen_glycitn
0.55632876
vioscreen_grams
4051.9996579999997
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
19.9
vioscreen_hei2010_fatty_acids
4.2
vioscreen_hei2010_fruit
3.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.3
vioscreen_hei2010_score
79.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.0
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
78.9
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
16.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.3
vioscreen_height
Not provided
vioscreen_histidin
3.0641364110000002
vioscreen_inositol
0.135698627
vioscreen_iron
29.12361141
vioscreen_isoleuc
5.193780768
vioscreen_isomalt
0.0
vioscreen_joules
10645.28562
vioscreen_juice_servings
0.01036
vioscreen_lactitol
0.0
vioscreen_lactose
19.26580961
vioscreen_legumes
0.066958906
vioscreen_leucine
8.997206095
vioscreen_line_gi
685.4920377000001
vioscreen_low_fat_dairy_serving
0.21361999999999998
vioscreen_lutzeax
8792.132192000001
vioscreen_lycopene
4704.866438
vioscreen_lysine
7.868245666
vioscreen_m_egg
1.111534307
vioscreen_m_fish_hi
0.793150685
vioscreen_m_fish_lo
2.397643876
vioscreen_m_frank
0.06441096
vioscreen_m_meat
1.078849312
vioscreen_m_mpf
6.3475345139999995
vioscreen_m_nutsd
0.734630094
vioscreen_m_organ
0.0
vioscreen_m_poult
2.013534086
vioscreen_m_soy
0.06958904
vioscreen_magnes
529.722988
vioscreen_maltitol
0.0
vioscreen_maltose
4.811151207
vioscreen_mangan
10.38824513
vioscreen_mannitol
0.235726009
vioscreen_methhis3
20.3873689
vioscreen_methion
2.678082025
vioscreen_mfa141
0.124027409
vioscreen_mfa161
1.241890434
vioscreen_mfa181
28.05497913
vioscreen_mfa201
0.395287668
vioscreen_mfa221
0.134821884
vioscreen_mfatot
30.18809664
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
12.29194403
vioscreen_nccglbr
236.6823202
vioscreen_nccglgr
165.56166519999996
vioscreen_niacin
32.86809985
vioscreen_niacineq
55.29459011
vioscreen_nitrogen
18.88860365
vioscreen_non_fried_fish_servings
4.8051900000000005
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.284355937
vioscreen_oxalic
495.13882710000007
vioscreen_oxalicm
512.3791951999999
vioscreen_pantothe
7.848849529
vioscreen_pectins
4.482931895
vioscreen_pfa182
15.81975332
vioscreen_pfa183
1.6692327630000001
vioscreen_pfa184
0.032794521
vioscreen_pfa204
0.23616439600000003
vioscreen_pfa205
0.18854798600000003
vioscreen_pfa225
0.06326026900000001
vioscreen_pfa226
0.33208218899999997
vioscreen_pfatot
18.46589255
vioscreen_phenylal
5.208766655
vioscreen_phosphor
1944.463356
vioscreen_phytic
1114.227312
vioscreen_pinitol
0.007068493
vioscreen_potass
4527.865753
vioscreen_procdate
10/28/15
vioscreen_proline
6.9506856
vioscreen_protanim
73.72768622
vioscreen_protein
116.5536173
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
42.82324754
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
225.0
vioscreen_retinol
731.9539384
vioscreen_rgrain
5.866713265
vioscreen_ribofla
3.158685386
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.1924700000000001
vioscreen_satoco
0.177863009
vioscreen_selenium
187.00008559999998
vioscreen_serine
5.4432055329999995
vioscreen_sfa100
0.638136981
vioscreen_sfa120
0.750383685
vioscreen_sfa140
2.519095977
vioscreen_sfa160
15.314275199999997
vioscreen_sfa170
0.179534222
vioscreen_sfa180
6.053617295
vioscreen_sfa200
0.188931483
vioscreen_sfa220
0.192137
vioscreen_sfa40
0.803999977
vioscreen_sfa60
0.455561682
vioscreen_sfa80
0.279561646
vioscreen_sfatot
27.79394264
vioscreen_sodium
4620.683219
vioscreen_sorbitol
0.461780788
vioscreen_srvid
20334.0
vioscreen_starch
147.66045590000002
vioscreen_started
8/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
27.58781036
vioscreen_sweet_servings
0.33973000000000003
vioscreen_tagatose
1.947452075
vioscreen_tfa161t
0.044630139000000006
vioscreen_tfa181t
2.064246609
vioscreen_tfa182t
0.33619175700000004
vioscreen_tgrain
9.971780019
vioscreen_thiamin
2.372493545
vioscreen_threonin
4.499287644
vioscreen_time
30.0
vioscreen_totaltfa
2.517561236
vioscreen_totcla
0.136383579
vioscreen_totfolat
818.1931507
vioscreen_totsugar
100.01914599999999
vioscreen_tryptoph
1.346246505
vioscreen_tyrosine
4.076466182
vioscreen_user_id
20334.0
vioscreen_v_drkgr
0.580739813
vioscreen_v_orange
0.48706849
vioscreen_v_other
0.781671143
vioscreen_v_potato
0.293671219
vioscreen_v_starcy
0.324273953
vioscreen_v_tomato
0.465452053
vioscreen_v_total
2.9328492880000003
vioscreen_valine
5.961205051
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
25928.82466
vioscreen_vita_rae
1906.4046230000001
vioscreen_vita_re
3080.85411
vioscreen_vitb12
9.092328633
vioscreen_vitb6
3.522657253
vioscreen_vitc
195.3660959
vioscreen_vitd
11.63597362
vioscreen_vitd2
0.002356164
vioscreen_vitd3
11.63367134
vioscreen_vitd_iu
465.4389448
vioscreen_vite_iu
18.50177788
vioscreen_vitk
383.9363014
vioscreen_water
3522.7421229999995
vioscreen_weight
Not provided
vioscreen_wgrain
4.105040668
vioscreen_whole_grain_servings
3.30285
vioscreen_xylitol
0.038410965
vioscreen_zinc
21.08605389
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
85.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)