10317.000028715; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633976
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:11Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028715
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28715
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1972.0
bmi
22.6
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-16
collection month
July
collection season
Summer
collection time
11:00
collection_timestamp
2015-07-16 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southeast
elevation
10.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6165fb7526ffdedd8bc0396ea089b149ecd6430b58b3d56bce00ddf6ba046139f48b06138bd88d39968461739426f3925b7269dc06d869d2d2b8a16f238585ce
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
28.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-82.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000028715
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
fdb8a76af9c4a59a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.02180744
vioscreen_addsugar
47.40158926
vioscreen_adsugtot
39.97745345
vioscreen_age
215.0
vioscreen_alanine
3.749479278
vioscreen_alcohol
0.025972601
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
983.5130992999999
vioscreen_alphtoce
13.03879361
vioscreen_alphtoco
10.57027504
vioscreen_arginine
4.177260809
vioscreen_ash
22.28013431
vioscreen_aspartam
0.0
vioscreen_aspartic
7.307453312000001
vioscreen_avcarb
242.32583480000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
4180.345547999999
vioscreen_betacryp
75.13312286
vioscreen_betaine
197.140839
vioscreen_betatoco
0.6779725790000001
vioscreen_biochana
0.015397261
vioscreen_bmi
Not provided
vioscreen_caffeine
194.99452050000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.22712
vioscreen_calcium_servings
3.67734
vioscreen_calories
2149.7931510000003
vioscreen_carbo
269.63901969999995
vioscreen_cholest
191.46735869999998
vioscreen_choline
292.9985017
vioscreen_clac9t11
0.12221918
vioscreen_clat10c12
0.022054795
vioscreen_copper
1.600383769
vioscreen_coumest
0.027534244
vioscreen_cystine
1.05736987
vioscreen_d_cheese
0.900712356
vioscreen_d_milk
1.31476708
vioscreen_d_tot_soym
2.227123355
vioscreen_d_total
2.227123355
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.854739589
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.352246094
vioscreen_discfat_oil
20.43964309
vioscreen_discfat_sol
53.72498929999999
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00030137
vioscreen_f_citmlb
0.068273968
vioscreen_f_nj_citmlb
0.065835613
vioscreen_f_nj_other
0.19463013899999998
vioscreen_f_nj_total
0.260465773
vioscreen_f_other
0.40950685299999995
vioscreen_f_total
0.477753438
vioscreen_fat
87.73562179
vioscreen_fiber
27.31018836
vioscreen_fibh2o
6.398739833
vioscreen_fibinso
20.875535100000004
vioscreen_finished
6/8/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
610.8418236
vioscreen_fol_nat
266.9753639
vioscreen_fol_syn
202.21564640000003
vioscreen_formontn
0.001150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.09589
vioscreen_frt5_day
0.4
vioscreen_frtsumm
1.0
vioscreen_fructose
14.33852205
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
4.997397394
vioscreen_g_total
8.348054233
vioscreen_g_whl
3.3506026589999998
vioscreen_galactos
0.232301393
vioscreen_gammtoco
21.52964469
vioscreen_gender
false
vioscreen_genistn
0.908328623
vioscreen_glac
128.3254816
vioscreen_gltc
141.9271404
vioscreen_glucose
15.78923373
vioscreen_glutamic
18.47268568
vioscreen_glycine
3.174986288
vioscreen_glycitn
0.46016436
vioscreen_grams
3601.081507
vioscreen_hei2010_dairy
8.0
vioscreen_hei2010_empty_calories
12.7
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
1.4
vioscreen_hei2010_greens_beans
3.0
vioscreen_hei2010_protien_foods
4.5
vioscreen_hei2010_refined_grains
7.9
vioscreen_hei2010_score
61.9
vioscreen_hei2010_sea_foods_plant_protiens
4.3
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.5
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
2.4
vioscreen_hei_fruit
1.4
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.0
vioscreen_hei_milk
8.0
vioscreen_hei_non_juice_frt
1.5
vioscreen_hei_oils
7.9
vioscreen_hei_sat_fat
3.9
vioscreen_hei_score
62.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
13.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.334465633
vioscreen_inositol
0.085863009
vioscreen_iron
18.74232796
vioscreen_isoleuc
3.857643608
vioscreen_isomalt
0.0
vioscreen_joules
8994.732192
vioscreen_juice_servings
0.43458
vioscreen_lactitol
0.0
vioscreen_lactose
17.92038474
vioscreen_legumes
0.345342453
vioscreen_leucine
6.608274695
vioscreen_line_gi
703.7166096
vioscreen_low_fat_dairy_serving
0.29477
vioscreen_lutzeax
2473.652568
vioscreen_lycopene
12931.968490000001
vioscreen_lysine
5.563342118
vioscreen_m_egg
0.029808217
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.022904109
vioscreen_m_frank
0.109616434
vioscreen_m_meat
0.728356181
vioscreen_m_mpf
3.3599452189999996
vioscreen_m_nutsd
0.030958905
vioscreen_m_organ
0.0
vioscreen_m_poult
2.49906842
vioscreen_m_soy
0.034465756
vioscreen_magnes
381.1255137
vioscreen_maltitol
0.0
vioscreen_maltose
3.309287711
vioscreen_mangan
6.272109107
vioscreen_mannitol
0.43315066
vioscreen_methhis3
14.1075891
vioscreen_methion
1.835644197
vioscreen_mfa141
0.11758904699999999
vioscreen_mfa161
1.0096986540000001
vioscreen_mfa181
25.73567262
vioscreen_mfa201
0.227041083
vioscreen_mfa221
0.006246575
vioscreen_mfatot
27.29424497
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.57027504
vioscreen_nccglbr
194.089405
vioscreen_nccglgr
135.7842573
vioscreen_niacin
26.13737693
vioscreen_niacineq
42.64633722
vioscreen_nitrogen
13.618548
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.218246502
vioscreen_oxalic
253.58249139999998
vioscreen_oxalicm
220.8356164
vioscreen_pantothe
5.002958448999999
vioscreen_pectins
2.850547811
vioscreen_pfa182
20.35222068
vioscreen_pfa183
2.122437861
vioscreen_pfa184
0.0016712329999999998
vioscreen_pfa204
0.132246597
vioscreen_pfa205
0.023397257999999997
vioscreen_pfa225
0.027424657999999998
vioscreen_pfa226
0.044328772999999995
vioscreen_pfatot
22.78646458
vioscreen_phenylal
3.8183566989999997
vioscreen_phosphor
1478.105993
vioscreen_phytic
1035.65274
vioscreen_pinitol
0.0074520540000000005
vioscreen_potass
3314.44589
vioscreen_procdate
10/28/15
vioscreen_proline
6.063835081000001
vioscreen_protanim
51.03473352
vioscreen_protein
84.28137843
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.24967091
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
401.0
vioscreen_retinol
546.0586045
vioscreen_rgrain
4.507671032
vioscreen_ribofla
2.100657842
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.6000799999999997
vioscreen_satoco
0.0
vioscreen_selenium
139.678521
vioscreen_serine
3.96383575
vioscreen_sfa100
0.756657514
vioscreen_sfa120
1.246986201
vioscreen_sfa140
3.087698657
vioscreen_sfa160
15.56438222
vioscreen_sfa170
0.118767098
vioscreen_sfa180
6.817341342000001
vioscreen_sfa200
0.134438355
vioscreen_sfa220
0.07443836200000001
vioscreen_sfa40
0.8055068759999999
vioscreen_sfa60
0.511479417
vioscreen_sfa80
0.446767143
vioscreen_sfatot
29.96123716
vioscreen_sodium
4430.607534000001
vioscreen_sorbitol
0.226273963
vioscreen_srvid
18850.0
vioscreen_starch
137.4465539
vioscreen_started
6/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.4653414
vioscreen_sweet_servings
1.35342
vioscreen_tagatose
1.140986362
vioscreen_tfa161t
0.064630137
vioscreen_tfa181t
2.4867945
vioscreen_tfa182t
0.467397235
vioscreen_tgrain
9.427890224
vioscreen_thiamin
1.821753933
vioscreen_threonin
3.2318630269999997
vioscreen_time
19.0
vioscreen_totaltfa
3.094164705
vioscreen_totcla
0.144602736
vioscreen_totfolat
469.1906678
vioscreen_totsugar
89.06438356
vioscreen_tryptoph
0.991972539
vioscreen_tyrosine
2.965643729
vioscreen_user_id
18850.0
vioscreen_v_drkgr
0.258493147
vioscreen_v_orange
0.149342461
vioscreen_v_other
0.7723288340000001
vioscreen_v_potato
0.555945159
vioscreen_v_starcy
0.24167123
vioscreen_v_tomato
1.21399996
vioscreen_v_total
3.191753398
vioscreen_valine
4.352493913
vioscreen_veg5_day
3.8
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
6.3
vioscreen_visit
1.0
vioscreen_vita_iu
9671.541095999999
vioscreen_vita_rae
938.5315068
vioscreen_vita_re
1331.00351
vioscreen_vitb12
4.429315269
vioscreen_vitb6
2.043040989
vioscreen_vitc
84.25116117
vioscreen_vitd
6.940685199
vioscreen_vitd2
0.000191781
vioscreen_vitd3
6.940520655
vioscreen_vitd_iu
277.627408
vioscreen_vite_iu
15.7606044
vioscreen_vitk
140.1733733
vioscreen_water
3165.34589
vioscreen_weight
Not provided
vioscreen_wgrain
4.919725894
vioscreen_whole_grain_servings
3.3506
vioscreen_xylitol
0.013260277
vioscreen_zinc
12.76704035
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)