American Gut Project; 10317.000022603
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632530
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022603
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
73.0
age_corrected
73.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22603
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1942.0
bmi
25.23
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-15
collection month
January
collection season
Winter
collection time
13:35
collection_timestamp
2015-01-15 13:35
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1692.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
7903469fb68001b987d8ac0d762e78777829661f7bb380ee87598fe94e18cb4f57d8029bf74c2f1db263f07017cfe1291af68c5ba65cfcdfc3998fff8bf67e81
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
39.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022603
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
3723f94dca707879
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.4965753419999999
vioscreen_a_cal
193.48514550000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.51665775
vioscreen_addsugar
50.65789277
vioscreen_adsugtot
48.41781357
vioscreen_age
215.0
vioscreen_alanine
5.341753398
vioscreen_alcohol
22.91060306
vioscreen_alcohol_servings
1.49658
vioscreen_alphacar
1161.354366
vioscreen_alphtoce
20.44200021
vioscreen_alphtoco
19.12512174
vioscreen_arginine
6.513233091
vioscreen_ash
37.02542541
vioscreen_aspartam
0.0
vioscreen_aspartic
11.57808085
vioscreen_avcarb
234.60747
vioscreen_bcodeid
Not provided
vioscreen_betacar
18428.53425
vioscreen_betacryp
225.23722169999996
vioscreen_betaine
115.62717250000001
vioscreen_betatoco
0.46063015
vioscreen_biochana
0.033260275
vioscreen_bmi
Not provided
vioscreen_caffeine
656.6172945000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.1974799999999999
vioscreen_calcium_servings
3.4792300000000003
vioscreen_calories
2321.8256850000002
vioscreen_carbo
284.23792810000003
vioscreen_cholest
332.4542808
vioscreen_choline
591.6755992999999
vioscreen_clac9t11
0.066657534
vioscreen_clat10c12
0.015835618
vioscreen_copper
2.481287123
vioscreen_coumest
0.486575317
vioscreen_cystine
1.229780725
vioscreen_d_cheese
0.415397289
vioscreen_d_milk
0.193917805
vioscreen_d_tot_soym
1.1974794990000002
vioscreen_d_total
1.1974794990000002
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.6130958870000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.623013766
vioscreen_discfat_oil
33.15383669
vioscreen_discfat_sol
21.29657401
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001534247
vioscreen_f_citmlb
1.052356041
vioscreen_f_nj_citmlb
1.038465693
vioscreen_f_nj_other
2.206054855
vioscreen_f_nj_total
3.244547972
vioscreen_f_other
2.25890411
vioscreen_f_total
3.311287658
vioscreen_fat
78.28365796
vioscreen_fiber
49.632823200000004
vioscreen_fibh2o
17.07090513
vioscreen_fibinso
32.8104131
vioscreen_finished
1/15/15
vioscreen_fish_servings
6.73615
vioscreen_fol_deqv
650.1694348999999
vioscreen_fol_nat
596.966524
vioscreen_fol_syn
31.28964309
vioscreen_formontn
0.005753424
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.6
vioscreen_fructose
39.52051852
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.702054795
vioscreen_g_total
1.8647671630000002
vioscreen_g_whl
0.162712327
vioscreen_galactos
1.027150695
vioscreen_gammtoco
11.17597389
vioscreen_gender
false
vioscreen_genistn
0.338575347
vioscreen_glac
96.97870291
vioscreen_gltc
111.490518
vioscreen_glucose
37.65542327
vioscreen_glutamic
20.34033069
vioscreen_glycine
4.713288608
vioscreen_glycitn
0.034493148
vioscreen_grams
6827.818493000001
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
72.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
2.814493258
vioscreen_inositol
0.360136978
vioscreen_iron
16.24490448
vioscreen_isoleuc
4.63265732
vioscreen_isomalt
0.0
vioscreen_joules
9714.518493000001
vioscreen_juice_servings
0.13342
vioscreen_lactitol
0.0
vioscreen_lactose
11.49594526
vioscreen_legumes
0.17446575399999997
vioscreen_leucine
7.934410451000001
vioscreen_line_gi
646.9810788
vioscreen_low_fat_dairy_serving
0.61159
vioscreen_lutzeax
6098.373973
vioscreen_lycopene
43076.87397
vioscreen_lysine
7.603726991
vioscreen_m_egg
0.589808216
vioscreen_m_fish_hi
1.6141917609999998
vioscreen_m_fish_lo
2.224684958
vioscreen_m_frank
0.103780814
vioscreen_m_meat
1.26646578
vioscreen_m_mpf
6.494822212000001
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
1.285835663
vioscreen_m_soy
0.0027123290000000003
vioscreen_magnes
556.7045805
vioscreen_maltitol
0.0
vioscreen_maltose
4.0723285
vioscreen_mangan
5.137808687
vioscreen_mannitol
1.308246686
vioscreen_methhis3
21.23895949
vioscreen_methion
2.405452028
vioscreen_mfa141
0.069424658
vioscreen_mfa161
1.162712453
vioscreen_mfa181
28.51627515
vioscreen_mfa201
0.619698595
vioscreen_mfa221
0.24731508
vioscreen_mfatot
30.828518300000002
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
19.12512174
vioscreen_nccglbr
173.3617509
vioscreen_nccglgr
121.26743359999999
vioscreen_niacin
34.90921179
vioscreen_niacineq
53.20342466
vioscreen_nitrogen
17.61331737
vioscreen_non_fried_fish_servings
6.73615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.914657133
vioscreen_oxalic
339.2511772
vioscreen_oxalicm
355.5966182
vioscreen_pantothe
11.99772715
vioscreen_pectins
10.04263097
vioscreen_pfa182
17.08394826
vioscreen_pfa183
2.041369462
vioscreen_pfa184
0.059726025
vioscreen_pfa204
0.18457532899999998
vioscreen_pfa205
0.24323283199999998
vioscreen_pfa225
0.08846575599999999
vioscreen_pfa226
0.48334241899999997
vioscreen_pfatot
20.31296153
vioscreen_phenylal
4.556164384
vioscreen_phosphor
1789.805137
vioscreen_phytic
752.9926370000001
vioscreen_pinitol
0.0029315070000000003
vioscreen_potass
6950.792466
vioscreen_procdate
10/28/15
vioscreen_proline
5.612767551
vioscreen_protanim
67.36523973
vioscreen_protein
108.92304150000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
41.54966824
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
616.0
vioscreen_retinol
235.16115150000002
vioscreen_rgrain
1.5327946080000001
vioscreen_ribofla
3.173561243
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.51997
vioscreen_satoco
0.0
vioscreen_selenium
138.1088934
vioscreen_serine
4.814137414
vioscreen_sfa100
0.28583562100000004
vioscreen_sfa120
0.396356159
vioscreen_sfa140
1.509835523
vioscreen_sfa160
11.68915213
vioscreen_sfa170
0.11504109
vioscreen_sfa180
4.339013672
vioscreen_sfa200
0.26216439
vioscreen_sfa220
0.403424658
vioscreen_sfa40
0.34884932
vioscreen_sfa60
0.194876705
vioscreen_sfa80
0.145780819
vioscreen_sfatot
20.10063008
vioscreen_sodium
5237.960615999999
vioscreen_sorbitol
1.220164427
vioscreen_srvid
16900.0
vioscreen_starch
58.40372432
vioscreen_started
1/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
47.79540347
vioscreen_sweet_servings
0.0
vioscreen_tagatose
4.25290427
vioscreen_tfa161t
0.046301374000000006
vioscreen_tfa181t
0.820986228
vioscreen_tfa182t
0.23819178800000002
vioscreen_tgrain
1.698191854
vioscreen_thiamin
1.864602452
vioscreen_threonin
4.110822118
vioscreen_time
28.0
vioscreen_totaltfa
1.121780855
vioscreen_totcla
0.08306849200000001
vioscreen_totfolat
628.2561644
vioscreen_totsugar
145.5954623
vioscreen_tryptoph
1.0988492779999999
vioscreen_tyrosine
3.55101402
vioscreen_user_id
16900.0
vioscreen_v_drkgr
0.900136953
vioscreen_v_orange
0.63706849
vioscreen_v_other
2.124821744
vioscreen_v_potato
0.505643787
vioscreen_v_starcy
0.467863025
vioscreen_v_tomato
3.596301102
vioscreen_v_total
8.231204516
vioscreen_valine
5.363918022
vioscreen_veg5_day
12.9
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
16.3
vioscreen_visit
1.0
vioscreen_vita_iu
32657.77808
vioscreen_vita_rae
1828.649486
vioscreen_vita_re
3422.134247
vioscreen_vitb12
5.941451734
vioscreen_vitb6
3.529260087
vioscreen_vitc
306.6718536
vioscreen_vitd
9.969424229
vioscreen_vitd2
0.001534247
vioscreen_vitd3
9.967862398
vioscreen_vitd_iu
398.7769692
vioscreen_vite_iu
28.468105199999997
vioscreen_vitk
317.49064639999995
vioscreen_water
6310.104795
vioscreen_weight
Not provided
vioscreen_wgrain
0.165369865
vioscreen_whole_grain_servings
0.16271
vioscreen_xylitol
0.096767122
vioscreen_zinc
14.22117937
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)