American Gut Project; 10317.000030066
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634107
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:19Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030066
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030066
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
27.12
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
true
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-18
collection month
August
collection season
Summer
collection time
10:15
collection_timestamp
2015-08-18 10:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
Netherlands
country of birth
Netherlands
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
33.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
Netherlands
gluten
No
has_physical_specimen
true
height cm
176.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
da597d6f8601df9a7109874e405c0d1ac19ecd64d135e000834174fc8aa5409dd173083daab6331bf28acbd0229ac9ebb5bb4bd8dab2b9c996b6a3f49f9caa94
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
52.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
5.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030066
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
GE
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f5441b2facedccbc
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.105452049
vioscreen_a_cal
12.75599984
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.937425086
vioscreen_addsugar
37.795454299999996
vioscreen_adsugtot
34.86682096
vioscreen_age
215.0
vioscreen_alanine
3.2016989510000005
vioscreen_alcohol
1.595616505
vioscreen_alcohol_servings
0.10545
vioscreen_alphacar
2230.1645550000003
vioscreen_alphtoce
10.70128893
vioscreen_alphtoco
10.26643836
vioscreen_arginine
3.3770139930000003
vioscreen_ash
17.53517899
vioscreen_aspartam
0.0
vioscreen_aspartic
6.254794521
vioscreen_avcarb
157.06431930000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
12566.22192
vioscreen_betacryp
456.84644689999993
vioscreen_betaine
43.46788849
vioscreen_betatoco
0.184986292
vioscreen_biochana
0.020328767
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
true
vioscreen_calcium_avg
35.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
1.09016
vioscreen_calcium_servings
2.53633
vioscreen_calories
1319.682534
vioscreen_carbo
175.6564319
vioscreen_cholest
154.09452050000002
vioscreen_choline
293.496083
vioscreen_clac9t11
0.01879452
vioscreen_clat10c12
0.0035068490000000003
vioscreen_copper
1.127588978
vioscreen_coumest
0.10994519800000001
vioscreen_cystine
0.84649307
vioscreen_d_cheese
0.078849317
vioscreen_d_milk
0.011671233999999999
vioscreen_d_tot_soym
1.090164394
vioscreen_d_total
1.090164394
vioscreen_d_yogurt
0.999589058
vioscreen_daidzein
0.136849307
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.9757534920000001
vioscreen_discfat_oil
27.4092332
vioscreen_discfat_sol
7.144958663
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00109589
vioscreen_f_citmlb
0.436821924
vioscreen_f_nj_citmlb
0.21216439
vioscreen_f_nj_other
0.452356166
vioscreen_f_nj_total
0.664547897
vioscreen_f_other
0.478794505
vioscreen_f_total
0.915643729
vioscreen_fat
43.41649454
vioscreen_fiber
18.59295805
vioscreen_fibh2o
5.310027156
vioscreen_fibinso
13.33068279
vioscreen_finished
8/18/15
vioscreen_fish_servings
5.475
vioscreen_fol_deqv
285.6405608
vioscreen_fol_nat
252.55684930000004
vioscreen_fol_syn
19.46030073
vioscreen_formontn
0.002575342
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.3
vioscreen_frtsumm
1.8
vioscreen_fructose
20.34019291
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.156575493
vioscreen_g_total
2.938027411
vioscreen_g_whl
1.781452001
vioscreen_galactos
1.3770410830000002
vioscreen_gammtoco
3.5187941460000003
vioscreen_gender
false
vioscreen_genistn
0.157232865
vioscreen_glac
65.83235231
vioscreen_gltc
71.47230843
vioscreen_glucose
20.86643568
vioscreen_glutamic
11.07191848
vioscreen_glycine
2.509890371
vioscreen_glycitn
0.035123287
vioscreen_grams
4032.64726
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.3
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
83.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
1.628027511
vioscreen_inositol
0.138164405
vioscreen_iron
7.779343696000001
vioscreen_isoleuc
2.8439446439999996
vioscreen_isomalt
0.0
vioscreen_joules
5521.545548
vioscreen_juice_servings
0.5021399999999999
vioscreen_lactitol
0.0
vioscreen_lactose
14.76323175
vioscreen_legumes
0.011424658
vioscreen_leucine
4.927342747
vioscreen_line_gi
300.6744221
vioscreen_low_fat_dairy_serving
0.99959
vioscreen_lutzeax
3176.655137
vioscreen_lycopene
16298.63562
vioscreen_lysine
4.797480001
vioscreen_m_egg
0.342465753
vioscreen_m_fish_hi
2.161753532
vioscreen_m_fish_lo
0.958246602
vioscreen_m_frank
0.027342464
vioscreen_m_meat
0.366328786
vioscreen_m_mpf
3.9771782030000002
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.463561635
vioscreen_m_soy
0.00460274
vioscreen_magnes
281.24015410000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.5632055
vioscreen_mangan
3.046136558
vioscreen_mannitol
0.47095888700000005
vioscreen_methhis3
13.40136853
vioscreen_methion
1.556109536
vioscreen_mfa141
0.015479451000000002
vioscreen_mfa161
0.818301433
vioscreen_mfa181
21.42780929
vioscreen_mfa201
0.4
vioscreen_mfa221
0.35871235100000004
vioscreen_mfatot
23.14126445
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.26643836
vioscreen_nccglbr
115.4493258
vioscreen_nccglgr
80.74328981
vioscreen_niacin
14.56243713
vioscreen_niacineq
25.29733786
vioscreen_nitrogen
9.781561697
vioscreen_non_fried_fish_servings
5.475
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.727424684
vioscreen_oxalic
175.7437607
vioscreen_oxalicm
171.47270980000002
vioscreen_pantothe
4.796877007
vioscreen_pectins
3.6575616710000003
vioscreen_pfa182
6.169013538
vioscreen_pfa183
0.6987123670000001
vioscreen_pfa184
0.083205482
vioscreen_pfa204
0.10038356
vioscreen_pfa205
0.270383568
vioscreen_pfa225
0.10358903400000001
vioscreen_pfa226
0.572301326
vioscreen_pfatot
8.094630244
vioscreen_phenylal
2.7693697160000004
vioscreen_phosphor
1074.14024
vioscreen_phytic
479.07457189999997
vioscreen_pinitol
0.009506849
vioscreen_potass
3052.775685
vioscreen_procdate
10/28/15
vioscreen_proline
3.493452015
vioscreen_protanim
43.94019157
vioscreen_protein
60.83824379
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.88005137
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
189.0
vioscreen_retinol
101.94788100000001
vioscreen_rgrain
1.036602783
vioscreen_ribofla
1.239095944
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.5220800000000003
vioscreen_satoco
0.0
vioscreen_selenium
83.46087329
vioscreen_serine
2.949753518
vioscreen_sfa100
0.07227397
vioscreen_sfa120
0.08857533699999999
vioscreen_sfa140
0.531068483
vioscreen_sfa160
6.160465941
vioscreen_sfa170
0.026027397
vioscreen_sfa180
1.6385752219999998
vioscreen_sfa200
0.114493143
vioscreen_sfa220
0.048383572
vioscreen_sfa40
0.086739726
vioscreen_sfa60
0.042958905
vioscreen_sfa80
0.031452054
vioscreen_sfatot
9.01471265
vioscreen_sodium
2655.548459
vioscreen_sorbitol
0.619506794
vioscreen_srvid
20430.0
vioscreen_starch
48.62158605
vioscreen_started
8/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.96687714
vioscreen_sweet_servings
0.0
vioscreen_tagatose
7.1119455
vioscreen_tfa161t
0.019123288000000002
vioscreen_tfa181t
0.287972646
vioscreen_tfa182t
0.081780823
vioscreen_tgrain
2.82695881
vioscreen_thiamin
0.927123355
vioscreen_threonin
2.574437975
vioscreen_time
13.0
vioscreen_totaltfa
0.38906852
vioscreen_totcla
0.022630137999999998
vioscreen_totfolat
272.0170805
vioscreen_totsugar
93.6921982
vioscreen_tryptoph
0.643178025
vioscreen_tyrosine
2.180356378
vioscreen_user_id
20430.0
vioscreen_v_drkgr
0.362876704
vioscreen_v_orange
0.642438371
vioscreen_v_other
1.9294246309999998
vioscreen_v_potato
0.030547944
vioscreen_v_starcy
0.034410957
vioscreen_v_tomato
0.930548012
vioscreen_v_total
3.929835991
vioscreen_valine
3.496602766
vioscreen_veg5_day
8.8
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.9
vioscreen_visit
1.0
vioscreen_vita_iu
23521.32603
vioscreen_vita_rae
1261.091267
vioscreen_vita_re
2420.238699
vioscreen_vitb12
4.629972777
vioscreen_vitb6
1.9196165319999998
vioscreen_vitc
281.5113014
vioscreen_vitd
10.73660303
vioscreen_vitd2
0.002356164
vioscreen_vitd3
10.734274000000001
vioscreen_vitd_iu
429.46412139999995
vioscreen_vite_iu
15.32032989
vioscreen_vitk
184.35205480000002
vioscreen_water
3742.0527399999996
vioscreen_weight
Not provided
vioscreen_wgrain
1.790356111
vioscreen_whole_grain_servings
1.78145
vioscreen_xylitol
0.028219176000000002
vioscreen_zinc
6.980191833999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
84.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)