American Gut Project; 10317.000030112
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634123
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030112
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030112
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
39.57
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/05/2015
collection month
August
collection season
Summer
collection time
07:30
collection_timestamp
2015-08-05 07:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
Not sure
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Not sure
drinks_per_session
Not provided
economic_region
Not provided
elevation
128.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
154.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7dad12a44b287aa20d0c481a574bf0fc0f8adbb72b972334649a4e7fccfe34473227671c94cf7aac91c8fa12ce1dd46b674776678aace06a6f5e611ae92fa629
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
52.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030112
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
d15d6acf1e80d02e
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.520438249
vioscreen_addsugar
25.13062928
vioscreen_adsugtot
23.82158872
vioscreen_age
215.0
vioscreen_alanine
3.425945125
vioscreen_alcohol
0.001041096
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1933.1875
vioscreen_alphtoce
9.570136585
vioscreen_alphtoco
8.720465673
vioscreen_arginine
4.358493084
vioscreen_ash
17.62545484
vioscreen_aspartam
0.0
vioscreen_aspartic
7.376712329
vioscreen_avcarb
158.35332830000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
6811.565753
vioscreen_betacryp
70.72208369
vioscreen_betaine
47.10126284
vioscreen_betatoco
0.286958919
vioscreen_biochana
0.0018630139999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
268.397667
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.77258
vioscreen_calcium_servings
4.01074
vioscreen_calories
1702.257877
vioscreen_carbo
178.4344927
vioscreen_cholest
386.6416524
vioscreen_choline
401.1271832
vioscreen_clac9t11
0.135013695
vioscreen_clat10c12
0.021972604
vioscreen_copper
1.5928769459999998
vioscreen_coumest
0.0007945210000000001
vioscreen_cystine
0.907863168
vioscreen_d_cheese
1.4178904909999999
vioscreen_d_milk
0.854876709
vioscreen_d_tot_soym
2.7725754830000002
vioscreen_d_total
2.7725754830000002
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.020684933
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.2742741000000002
vioscreen_discfat_oil
18.43863041
vioscreen_discfat_sol
48.04200021
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0027123290000000003
vioscreen_f_citmlb
0.298027415
vioscreen_f_nj_citmlb
0.296164379
vioscreen_f_nj_other
1.732712335
vioscreen_f_nj_total
2.0288766519999997
vioscreen_f_other
1.732712335
vioscreen_f_total
2.030739646
vioscreen_fat
81.26736408
vioscreen_fiber
20.08142391
vioscreen_fibh2o
5.104082834
vioscreen_fibinso
15.06978141
vioscreen_finished
7/31/15
vioscreen_fish_servings
2.13442
vioscreen_fol_deqv
335.521768
vioscreen_fol_nat
305.4898545
vioscreen_fol_syn
17.63969927
vioscreen_formontn
0.001890411
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.1
vioscreen_fructose
19.72926209
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.698082158
vioscreen_g_total
2.310958904
vioscreen_g_whl
1.612849322
vioscreen_galactos
0.7861095690000001
vioscreen_gammtoco
7.2356712860000005
vioscreen_gender
false
vioscreen_genistn
0.016630137
vioscreen_glac
69.24081764
vioscreen_gltc
77.83498502
vioscreen_glucose
20.01961553
vioscreen_glutamic
14.80860311
vioscreen_glycine
2.8118906519999998
vioscreen_glycitn
0.001616438
vioscreen_grams
3065.4506850000002
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.4
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.1
vioscreen_hei2010_veg
4.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.3
vioscreen_hei_drk_g_org_veg_leg
4.7
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
70.2
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
12.8
vioscreen_hei_veg
4.9
vioscreen_hei_whl_grains
3.2
vioscreen_height
Not provided
vioscreen_histidin
2.185698376
vioscreen_inositol
0.062027400999999996
vioscreen_iron
8.16613803
vioscreen_isoleuc
3.6661370260000004
vioscreen_isomalt
0.0
vioscreen_joules
7122.244521
vioscreen_juice_servings
0.00373
vioscreen_lactitol
0.0
vioscreen_lactose
19.25734161
vioscreen_legumes
0.0038356159999999996
vioscreen_leucine
6.317835643
vioscreen_line_gi
363.9895548
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
1833.803425
vioscreen_lycopene
1474.1291099999999
vioscreen_lysine
5.599945152
vioscreen_m_egg
1.017780879
vioscreen_m_fish_hi
0.311260276
vioscreen_m_fish_lo
0.90506851
vioscreen_m_frank
0.039589041
vioscreen_m_meat
0.06715068
vioscreen_m_mpf
2.553424658
vioscreen_m_nutsd
2.24876709
vioscreen_m_organ
0.135369863
vioscreen_m_poult
1.095068527
vioscreen_m_soy
0.000438356
vioscreen_magnes
353.96671660000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.784383695
vioscreen_mangan
6.097452242
vioscreen_mannitol
0.22306853
vioscreen_methhis3
8.760548213
vioscreen_methion
1.863095971
vioscreen_mfa141
0.14243836099999999
vioscreen_mfa161
1.08463001
vioscreen_mfa181
25.13205533
vioscreen_mfa201
0.33457535
vioscreen_mfa221
0.007698631
vioscreen_mfatot
27.056653999999998
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
8.720465673
vioscreen_nccglbr
109.9460081
vioscreen_nccglgr
76.89692316
vioscreen_niacin
14.7224382
vioscreen_niacineq
29.28079249
vioscreen_nitrogen
12.45945259
vioscreen_non_fried_fish_servings
2.13442
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.136027213
vioscreen_oxalic
238.5288527
vioscreen_oxalicm
254.57476459999998
vioscreen_pantothe
5.611972255
vioscreen_pectins
3.929041363
vioscreen_pfa182
11.24747833
vioscreen_pfa183
0.967725864
vioscreen_pfa184
0.006356165
vioscreen_pfa204
0.17536986899999998
vioscreen_pfa205
0.035698632
vioscreen_pfa225
0.024136987000000002
vioscreen_pfa226
0.10257534900000001
vioscreen_pfatot
12.69008321
vioscreen_phenylal
3.648438503
vioscreen_phosphor
1504.586301
vioscreen_phytic
582.5161387
vioscreen_pinitol
0.001315068
vioscreen_potass
3341.8318489999997
vioscreen_procdate
10/28/15
vioscreen_proline
5.258602445
vioscreen_protanim
54.66282106
vioscreen_protein
76.82090111
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.14953179
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
244.0
vioscreen_retinol
740.9265411
vioscreen_rgrain
0.739342342
vioscreen_ribofla
1.923150886
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.75022
vioscreen_satoco
0.0
vioscreen_selenium
110.812789
vioscreen_serine
4.0936717410000005
vioscreen_sfa100
0.968876585
vioscreen_sfa120
1.063205416
vioscreen_sfa140
4.036355549
vioscreen_sfa160
16.92588961
vioscreen_sfa170
0.16084932300000002
vioscreen_sfa180
7.24284969
vioscreen_sfa200
0.215917802
vioscreen_sfa220
0.360328779
vioscreen_sfa40
1.1589862979999999
vioscreen_sfa60
0.682684995
vioscreen_sfa80
0.48947946200000003
vioscreen_sfatot
34.06008134
vioscreen_sodium
2777.311473
vioscreen_sorbitol
0.7475889440000001
vioscreen_srvid
20282.0
vioscreen_starch
50.41705908
vioscreen_started
7/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.54059825
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
5.157150645
vioscreen_tfa161t
0.08747945300000001
vioscreen_tfa181t
1.510822118
vioscreen_tfa182t
0.421232877
vioscreen_tgrain
2.3838357169999997
vioscreen_thiamin
0.9322466290000001
vioscreen_threonin
3.01632866
vioscreen_time
26.0
vioscreen_totaltfa
2.070493097
vioscreen_totcla
0.157260278
vioscreen_totfolat
323.1295591
vioscreen_totsugar
92.31348459
vioscreen_tryptoph
0.87463011
vioscreen_tyrosine
3.022986342
vioscreen_user_id
20282.0
vioscreen_v_drkgr
0.200164377
vioscreen_v_orange
0.43317808399999996
vioscreen_v_other
0.497287656
vioscreen_v_potato
0.373780802
vioscreen_v_starcy
0.12643836
vioscreen_v_tomato
0.21254795
vioscreen_v_total
1.843396999
vioscreen_valine
4.368986114
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.7
vioscreen_visit
1.0
vioscreen_vita_iu
15492.123290000001
vioscreen_vita_rae
1392.052997
vioscreen_vita_re
2043.1808219999998
vioscreen_vitb12
5.588712342000001
vioscreen_vitb6
1.962466054
vioscreen_vitc
97.01005993
vioscreen_vitd
8.82846479
vioscreen_vitd2
0.000219178
vioscreen_vitd3
8.828246067
vioscreen_vitd_iu
353.13859160000004
vioscreen_vite_iu
13.00243739
vioscreen_vitk
94.8953232
vioscreen_water
2721.765068
vioscreen_weight
Not provided
vioscreen_wgrain
1.644438276
vioscreen_whole_grain_servings
1.61285
vioscreen_xylitol
0.039232881000000004
vioscreen_zinc
9.787342145
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
95.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily