American Gut Project; 10317.000028076
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633553
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:29:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028076
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
80.0
age_corrected
80.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28076
antibiotic_history
Not provided
appendix_removed
true
artificial_sweeteners
Not provided
asd
Self-diagnosed
autoimmune
I do not have this condition
birth year
1935.0
bmi
22.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/08/2015
collection month
June
collection season
Summer
collection time
07:00
collection_timestamp
2015-06-08 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
74.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
388838cab1a7651db4b85bfd9f3493bedb00d46869139f1aa9c0dfc61ecf06e7973858f170289dc063bb4008c921993eefea7b929870e94b05c36932d4c2544f
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
54.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028076
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
0a0c00a48383d667
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.373205399
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.902110311
vioscreen_addsugar
43.79183701
vioscreen_adsugtot
38.44224369
vioscreen_age
215.0
vioscreen_alanine
4.2085208419999995
vioscreen_alcohol
0.807150728
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
1648.647089
vioscreen_alphtoce
11.3789611
vioscreen_alphtoco
9.797315791
vioscreen_arginine
4.708685052
vioscreen_ash
23.6934771
vioscreen_aspartam
23.190766800000002
vioscreen_aspartic
8.643451011
vioscreen_avcarb
239.01622430000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
7889.2835620000005
vioscreen_betacryp
160.91483300000002
vioscreen_betaine
201.1655822
vioscreen_betatoco
0.27298629999999996
vioscreen_biochana
0.00939726
vioscreen_bmi
Not provided
vioscreen_caffeine
218.439512
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.06186
vioscreen_calcium_servings
2.8491
vioscreen_calories
1966.9417809999998
vioscreen_carbo
262.7118151
vioscreen_cholest
398.1475171
vioscreen_choline
498.4544949
vioscreen_clac9t11
0.06772603099999999
vioscreen_clat10c12
0.010630137
vioscreen_copper
2.355780782
vioscreen_coumest
0.06753424599999999
vioscreen_cystine
1.1722190540000001
vioscreen_d_cheese
0.662383532
vioscreen_d_milk
0.399479445
vioscreen_d_tot_soym
1.061862893
vioscreen_d_total
1.061862893
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.036191778
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.5516437689999996
vioscreen_discfat_oil
21.3541631
vioscreen_discfat_sol
29.29369917
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002438356
vioscreen_f_citmlb
0.597369845
vioscreen_f_nj_citmlb
0.586219181
vioscreen_f_nj_other
0.569397223
vioscreen_f_nj_total
1.155643829
vioscreen_f_other
0.569397223
vioscreen_f_total
1.166794534
vioscreen_fat
65.0611997
vioscreen_fiber
23.68966717
vioscreen_fibh2o
7.522876311
vioscreen_fibinso
16.25731753
vioscreen_finished
6/6/15
vioscreen_fish_servings
5.7725
vioscreen_fol_deqv
590.0402825
vioscreen_fol_nat
417.36095889999996
vioscreen_fol_syn
101.530137
vioscreen_formontn
0.004164384
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.3
vioscreen_fructose
29.73235499
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
5.6848766589999995
vioscreen_g_total
7.1163841770000005
vioscreen_g_whl
1.431506849
vioscreen_galactos
0.202794511
vioscreen_gammtoco
14.37838051
vioscreen_gender
false
vioscreen_genistn
0.025013699
vioscreen_glac
128.6960081
vioscreen_gltc
140.349101
vioscreen_glucose
32.53367134
vioscreen_glutamic
17.49619141
vioscreen_glycine
3.5267942660000005
vioscreen_glycitn
0.002356164
vioscreen_grams
3575.896918
vioscreen_hei2010_dairy
4.2
vioscreen_hei2010_empty_calories
18.2
vioscreen_hei2010_fatty_acids
4.7
vioscreen_hei2010_fruit
3.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
5.6
vioscreen_hei2010_score
66.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.7
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.0
vioscreen_hei_sat_fat
8.3
vioscreen_hei_score
76.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.4
vioscreen_height
Not provided
vioscreen_histidin
2.307287765
vioscreen_inositol
0.069726035
vioscreen_iron
14.45906865
vioscreen_isoleuc
3.9006852660000004
vioscreen_isomalt
0.0
vioscreen_joules
8229.683562
vioscreen_juice_servings
0.0223
vioscreen_lactitol
0.0
vioscreen_lactose
5.609589041
vioscreen_legumes
0.0
vioscreen_leucine
6.514602954
vioscreen_line_gi
723.6931507
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6997.368493000001
vioscreen_lycopene
25406.07671
vioscreen_lysine
6.0169038960000005
vioscreen_m_egg
1.082986241
vioscreen_m_fish_hi
2.437643809
vioscreen_m_fish_lo
0.8518629940000001
vioscreen_m_frank
0.057452052999999996
vioscreen_m_meat
0.369506836
vioscreen_m_mpf
5.251726041
vioscreen_m_nutsd
0.19112329399999997
vioscreen_m_organ
0.315835613
vioscreen_m_poult
1.219479412
vioscreen_m_soy
0.000273973
vioscreen_magnes
355.6722817
vioscreen_maltitol
0.0
vioscreen_maltose
5.140959105
vioscreen_mangan
5.785013779
vioscreen_mannitol
0.516438314
vioscreen_methhis3
17.41454677
vioscreen_methion
2.0381917880000002
vioscreen_mfa141
0.070054799
vioscreen_mfa161
1.102082135
vioscreen_mfa181
18.15838105
vioscreen_mfa201
0.505397305
vioscreen_mfa221
0.441890434
vioscreen_mfatot
20.47533979
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.797315791
vioscreen_nccglbr
209.3285103
vioscreen_nccglgr
146.4567851
vioscreen_niacin
28.52832031
vioscreen_niacineq
46.00986194
vioscreen_nitrogen
14.92312447
vioscreen_non_fried_fish_servings
5.7725
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.935479987
vioscreen_oxalic
366.1683647
vioscreen_oxalicm
362.09614730000004
vioscreen_pantothe
6.618903842000001
vioscreen_pectins
4.261013752
vioscreen_pfa182
13.79438276
vioscreen_pfa183
1.724411053
vioscreen_pfa184
0.09695889199999999
vioscreen_pfa204
0.23679450000000002
vioscreen_pfa205
0.317452062
vioscreen_pfa225
0.126136989
vioscreen_pfa226
0.6711232640000001
vioscreen_pfatot
17.17356057
vioscreen_phenylal
3.75380759
vioscreen_phosphor
1372.837671
vioscreen_phytic
539.0627139999999
vioscreen_pinitol
0.008767123
vioscreen_potass
4199.383904
vioscreen_procdate
10/28/15
vioscreen_proline
5.020137254
vioscreen_protanim
57.27928617
vioscreen_protein
91.78636558
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.50733893
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
406.0
vioscreen_retinol
922.0679795
vioscreen_rgrain
5.900520387
vioscreen_ribofla
2.247725646
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.6738400000000002
vioscreen_satoco
0.0
vioscreen_selenium
146.596158
vioscreen_serine
3.9241913260000003
vioscreen_sfa100
0.41158907100000003
vioscreen_sfa120
0.594356171
vioscreen_sfa140
1.901616345
vioscreen_sfa160
11.43731405
vioscreen_sfa170
0.091232864
vioscreen_sfa180
4.85071269
vioscreen_sfa200
0.113506829
vioscreen_sfa220
0.104602741
vioscreen_sfa40
0.439753368
vioscreen_sfa60
0.24205479
vioscreen_sfa80
0.207835639
vioscreen_sfatot
20.74613388
vioscreen_sodium
4633.115068
vioscreen_sorbitol
0.13265754
vioscreen_srvid
18837.0
vioscreen_starch
124.40710619999999
vioscreen_started
6/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.54323496
vioscreen_sweet_servings
0.31947
vioscreen_tagatose
0.815835613
vioscreen_tfa161t
0.045397259
vioscreen_tfa181t
1.195534233
vioscreen_tfa182t
0.310958904
vioscreen_tgrain
6.760520789
vioscreen_thiamin
1.8100550819999999
vioscreen_threonin
3.489424698
vioscreen_time
20.0
vioscreen_totaltfa
1.577890391
vioscreen_totcla
0.079123296
vioscreen_totfolat
518.8901541
vioscreen_totsugar
92.28022259999999
vioscreen_tryptoph
1.046657531
vioscreen_tyrosine
2.8958629869999997
vioscreen_user_id
18837.0
vioscreen_v_drkgr
0.592739743
vioscreen_v_orange
0.250712335
vioscreen_v_other
0.610164402
vioscreen_v_potato
1.644493124
vioscreen_v_starcy
0.067616439
vioscreen_v_tomato
1.4167122619999999
vioscreen_v_total
4.582437928
vioscreen_valine
4.446438557
vioscreen_veg5_day
4.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
17730.242469999997
vioscreen_vita_rae
1654.905137
vioscreen_vita_re
2387.746062
vioscreen_vitb12
8.946246254
vioscreen_vitb6
2.51063015
vioscreen_vitc
157.3885381
vioscreen_vitd
14.692247699999998
vioscreen_vitd2
0.002136986
vioscreen_vitd3
14.69016615
vioscreen_vitd_iu
587.6899080000001
vioscreen_vite_iu
14.62304152
vioscreen_vitk
326.1881207
vioscreen_water
3146.843493
vioscreen_weight
Not provided
vioscreen_wgrain
0.859999983
vioscreen_whole_grain_servings
1.43151
vioscreen_xylitol
0.021041097999999998
vioscreen_zinc
8.728272152999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)