American Gut Project; 10317.000029245
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633291
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029245
acid_reflux
Not provided
acne medication
true
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29245
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
33.89
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-24
collection month
June
collection season
Summer
collection time
09:45
collection_timestamp
2015-06-24 09:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Singapore
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
99.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
ba21f69912abcf17dafe5989702b2b202097d0bd4f38564241789ef0d99be5f661dbe8adf5f6674d1d28cf9bac0a3ae35ee2238810c2e51d4e947dbbba8a1e40
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
37.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029245
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b95de0a32b8fb702
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.10695890699999999
vioscreen_a_cal
12.91161708
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.100547811
vioscreen_addsugar
20.05306881
vioscreen_adsugtot
17.82410905
vioscreen_age
215.0
vioscreen_alanine
7.143040989
vioscreen_alcohol
1.661917741
vioscreen_alcohol_servings
0.10695999999999999
vioscreen_alphacar
391.73197769999996
vioscreen_alphtoce
17.81364378
vioscreen_alphtoco
15.70378184
vioscreen_arginine
8.764410317000001
vioscreen_ash
27.8395869
vioscreen_aspartam
0.0
vioscreen_aspartic
12.8890411
vioscreen_avcarb
170.3912992
vioscreen_bcodeid
Not provided
vioscreen_betacar
3755.105822
vioscreen_betacryp
427.3949058
vioscreen_betaine
111.2959011
vioscreen_betatoco
0.523287755
vioscreen_biochana
0.015178083
vioscreen_bmi
Not provided
vioscreen_caffeine
621.6713613
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.48321000000000003
vioscreen_calcium_servings
2.2397
vioscreen_calories
2406.19863
vioscreen_carbo
192.5980736
vioscreen_cholest
578.8776113
vioscreen_choline
654.0064212
vioscreen_clac9t11
0.09358903
vioscreen_clat10c12
0.029890411000000002
vioscreen_copper
1.8943563380000001
vioscreen_coumest
0.50909591
vioscreen_cystine
1.8915345069999998
vioscreen_d_cheese
0.283506859
vioscreen_d_milk
0.12301371300000001
vioscreen_d_tot_soym
0.48320550799999995
vioscreen_d_total
0.48320550799999995
vioscreen_d_yogurt
0.076684931
vioscreen_daidzein
4.413973205
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.83917855
vioscreen_discfat_oil
45.961997
vioscreen_discfat_sol
40.15365208
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
1.675178089
vioscreen_f_nj_citmlb
0.17095890800000002
vioscreen_f_nj_other
0.299561655
vioscreen_f_nj_total
0.47052056299999995
vioscreen_f_other
0.299561655
vioscreen_f_total
1.9747398059999999
vioscreen_fat
124.58573419999999
vioscreen_fiber
22.20780715
vioscreen_fibh2o
9.431753665
vioscreen_fibinso
12.84153601
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.8659600000000001
vioscreen_fol_deqv
644.3119007
vioscreen_fol_nat
480.7348887
vioscreen_fol_syn
96.15474101
vioscreen_formontn
0.003863014
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.28584
vioscreen_frt5_day
2.5
vioscreen_frtsumm
3.9
vioscreen_fructose
23.45879441
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
3.90452028
vioscreen_g_total
4.44197279
vioscreen_g_whl
0.537479432
vioscreen_galactos
0.274191765
vioscreen_gammtoco
18.72769558
vioscreen_gender
false
vioscreen_genistn
5.251726041
vioscreen_glac
77.771067
vioscreen_gltc
83.59351991
vioscreen_glucose
28.68043932
vioscreen_glutamic
23.17906411
vioscreen_glycine
6.848903039
vioscreen_glycitn
0.7311506720000001
vioscreen_grams
6269.55
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
4.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.2
vioscreen_hei2010_veg
3.7
vioscreen_hei2010_whole_fruit
2.4
vioscreen_hei2010_whole_grains
1.5
vioscreen_hei_drk_g_org_veg_leg
3.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
2.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.6
vioscreen_hei_score
65.2
vioscreen_hei_sodium
0.2
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
3.7
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
3.811616412
vioscreen_inositol
0.584575371
vioscreen_iron
14.99405501
vioscreen_isoleuc
6.314547437000001
vioscreen_isomalt
0.0
vioscreen_joules
10067.53562
vioscreen_juice_servings
3.0084400000000002
vioscreen_lactitol
0.0
vioscreen_lactose
2.742246696
vioscreen_legumes
0.034383562
vioscreen_leucine
10.18706857
vioscreen_line_gi
349.1428724
vioscreen_low_fat_dairy_serving
0.07668
vioscreen_lutzeax
3363.045205
vioscreen_lycopene
6140.689726
vioscreen_lysine
9.557587757
vioscreen_m_egg
2.415835697
vioscreen_m_fish_hi
0.49345205600000003
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
1.0655890479999999
vioscreen_m_meat
2.1979179490000003
vioscreen_m_mpf
10.50109562
vioscreen_m_nutsd
3.4106849980000002
vioscreen_m_organ
0.0
vioscreen_m_poult
6.7441091879999995
vioscreen_m_soy
0.408739733
vioscreen_magnes
453.2380565
vioscreen_maltitol
0.0
vioscreen_maltose
2.000685099
vioscreen_mangan
6.110795029
vioscreen_mannitol
0.196575322
vioscreen_methhis3
39.59134471
vioscreen_methion
3.274876592
vioscreen_mfa141
0.10975342800000001
vioscreen_mfa161
2.246575342
vioscreen_mfa181
50.74707299
vioscreen_mfa201
0.889972509
vioscreen_mfa221
0.10572602800000001
vioscreen_mfatot
54.47856378
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
15.70378184
vioscreen_nccglbr
122.0514983
vioscreen_nccglgr
85.37604345
vioscreen_niacin
36.33772742
vioscreen_niacineq
60.38616759
vioscreen_nitrogen
22.34531518
vioscreen_non_fried_fish_servings
0.8659600000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.4210141530000002
vioscreen_oxalic
345.47925939999993
vioscreen_oxalicm
385.2284247
vioscreen_pantothe
9.048135836
vioscreen_pectins
3.728931667
vioscreen_pfa182
25.51402772
vioscreen_pfa183
2.976000308
vioscreen_pfa184
0.02241096
vioscreen_pfa204
0.416739811
vioscreen_pfa205
0.09706848400000001
vioscreen_pfa225
0.08082191799999999
vioscreen_pfa226
0.24569863100000003
vioscreen_pfatot
29.54457941
vioscreen_phenylal
5.859672651
vioscreen_phosphor
1539.0364730000001
vioscreen_phytic
951.4601027000001
vioscreen_pinitol
0.027123289
vioscreen_potass
4217.279452000001
vioscreen_procdate
10/28/15
vioscreen_proline
7.120465672999999
vioscreen_protanim
101.1334332
vioscreen_protein
136.87072990000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.73706657
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
372.0
vioscreen_retinol
262.6140839
vioscreen_rgrain
3.5157260010000004
vioscreen_ribofla
2.7723560910000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.3118100000000001
vioscreen_satoco
0.0
vioscreen_selenium
178.57369430000003
vioscreen_serine
6.101370532000001
vioscreen_sfa100
0.16808219800000002
vioscreen_sfa120
0.456657514
vioscreen_sfa140
1.441342539
vioscreen_sfa160
18.7263003
vioscreen_sfa170
0.131315059
vioscreen_sfa180
7.761837141
vioscreen_sfa200
0.421643819
vioscreen_sfa220
0.619095894
vioscreen_sfa40
0.173808205
vioscreen_sfa60
0.080438363
vioscreen_sfa80
0.085506852
vioscreen_sfatot
30.79640946
vioscreen_sodium
4761.732534000001
vioscreen_sorbitol
0.22424652899999997
vioscreen_srvid
19959.0
vioscreen_starch
76.37789491
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.78726188
vioscreen_sweet_servings
0.28493
vioscreen_tagatose
0.587123296
vioscreen_tfa161t
0.050712329
vioscreen_tfa181t
2.7584111460000003
vioscreen_tfa182t
0.40298625
vioscreen_tgrain
4.784766963
vioscreen_thiamin
1.730876766
vioscreen_threonin
5.28046574
vioscreen_time
17.0
vioscreen_totaltfa
3.27172584
vioscreen_totcla
0.125260277
vioscreen_totfolat
576.8894692000001
vioscreen_totsugar
80.46572667
vioscreen_tryptoph
1.4427394919999998
vioscreen_tyrosine
4.521644237
vioscreen_user_id
19959.0
vioscreen_v_drkgr
0.43701368399999996
vioscreen_v_orange
0.10871233
vioscreen_v_other
0.721314982
vioscreen_v_potato
0.28876710699999997
vioscreen_v_starcy
0.068876711
vioscreen_v_tomato
0.31364382399999996
vioscreen_v_total
1.938410678
vioscreen_valine
6.747232181
vioscreen_veg5_day
2.7
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.9
vioscreen_visit
1.0
vioscreen_vita_iu
7814.839040999999
vioscreen_vita_rae
609.6697346
vioscreen_vita_re
956.726113
vioscreen_vitb12
4.456164384
vioscreen_vitb6
2.435863254
vioscreen_vitc
225.0341182
vioscreen_vitd
5.472329168
vioscreen_vitd2
0.002575342
vioscreen_vitd3
5.4697536520000005
vioscreen_vitd_iu
218.8931667
vioscreen_vite_iu
23.38758562
vioscreen_vitk
181.3522474
vioscreen_water
5837.578082
vioscreen_weight
Not provided
vioscreen_wgrain
1.269041129
vioscreen_whole_grain_servings
0.5374800000000001
vioscreen_xylitol
0.014273973999999998
vioscreen_zinc
14.88657294
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
95.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)