American Gut Project; 10317.000031464
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634316
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031464
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000031464
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
46.0
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Not provided
collection date
08/04/2015
collection month
August
collection season
Summer
collection time
21:00
collection_timestamp
2015-08-04 21:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
203.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2d8bdf941b6f72efaa9c1c4c9fa10b4aee7ff39d69b3997ff896469c757ce58ceac59313c90882bbfba024b890f37d54627e44b61fea3ace7c55279c86eeb7d2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-89.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031464
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
058226d9b26970b6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.104821913
vioscreen_a_cal
12.75599984
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.41473874
vioscreen_addsugar
47.09717466
vioscreen_adsugtot
37.63156036
vioscreen_age
215.0
vioscreen_alanine
4.130219927
vioscreen_alcohol
1.639890571
vioscreen_alcohol_servings
0.10482000000000001
vioscreen_alphacar
2203.594692
vioscreen_alphtoce
13.63260381
vioscreen_alphtoco
11.69465834
vioscreen_arginine
4.834162966
vioscreen_ash
21.673618100000002
vioscreen_aspartam
26.67868418
vioscreen_aspartic
8.09539611
vioscreen_avcarb
167.4658176
vioscreen_bcodeid
Not provided
vioscreen_betacar
9496.191095999999
vioscreen_betacryp
260.5593108
vioscreen_betaine
135.68822769999997
vioscreen_betatoco
0.5282739089999999
vioscreen_biochana
0.00939726
vioscreen_bmi
Not provided
vioscreen_caffeine
538.459161
vioscreen_calcium
true
vioscreen_calcium_avg
1028.0
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
1.1693200000000001
vioscreen_calcium_servings
2.6903799999999998
vioscreen_calories
1812.1011989999997
vioscreen_carbo
193.13298369999998
vioscreen_cholest
240.02577050000002
vioscreen_choline
330.94327910000004
vioscreen_clac9t11
0.107232875
vioscreen_clat10c12
0.023095894
vioscreen_copper
1.434794554
vioscreen_coumest
0.318027402
vioscreen_cystine
1.028903993
vioscreen_d_cheese
0.973698697
vioscreen_d_milk
0.192684916
vioscreen_d_tot_soym
1.169315202
vioscreen_d_total
1.169315202
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.35556164
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.483671005
vioscreen_discfat_oil
26.98161655
vioscreen_discfat_sol
41.42876445
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0013698629999999998
vioscreen_f_citmlb
0.554465767
vioscreen_f_nj_citmlb
0.550602743
vioscreen_f_nj_other
0.8250137959999999
vioscreen_f_nj_total
1.375671136
vioscreen_f_other
0.8250137959999999
vioscreen_f_total
1.3795066519999999
vioscreen_fat
83.2971372
vioscreen_fiber
25.55944991
vioscreen_fibh2o
9.036300701
vioscreen_fibinso
16.51353141
vioscreen_finished
8/4/15
vioscreen_fish_servings
1.5417299999999998
vioscreen_fol_deqv
469.4285103
vioscreen_fol_nat
336.7744863
vioscreen_fol_syn
77.97405822
vioscreen_formontn
0.001972603
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.8
vioscreen_fructose
20.4611783
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.7721096089999997
vioscreen_g_total
4.038602312
vioscreen_g_whl
1.266493037
vioscreen_galactos
0.418191821
vioscreen_gammtoco
15.94693119
vioscreen_gender
false
vioscreen_genistn
0.24553423300000002
vioscreen_glac
69.76950985
vioscreen_gltc
76.83314426
vioscreen_glucose
22.07221613
vioscreen_glutamic
16.79890438
vioscreen_glycine
3.57372679
vioscreen_glycitn
0.022136989
vioscreen_grams
5672.192123
vioscreen_hei2010_dairy
5.0
vioscreen_hei2010_empty_calories
12.8
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
4.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.8
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.3
vioscreen_hei_score
68.0
vioscreen_hei_sodium
1.2
vioscreen_hei_sol_fat_alc_add_sug
12.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.416849048
vioscreen_inositol
0.10049315199999999
vioscreen_iron
11.52246763
vioscreen_isoleuc
3.950410691
vioscreen_isomalt
0.0
vioscreen_joules
7581.827397
vioscreen_juice_servings
0.0077
vioscreen_lactitol
0.0
vioscreen_lactose
5.739506635
vioscreen_legumes
0.022246575
vioscreen_leucine
6.71895869
vioscreen_line_gi
376.6231592
vioscreen_low_fat_dairy_serving
0.44273999999999997
vioscreen_lutzeax
4295.501711999999
vioscreen_lycopene
8817.319862999999
vioscreen_lysine
6.113918691
vioscreen_m_egg
0.308794497
vioscreen_m_fish_hi
0.199972597
vioscreen_m_fish_lo
0.678657553
vioscreen_m_frank
0.6491506920000001
vioscreen_m_meat
1.434548072
vioscreen_m_mpf
5.133944911
vioscreen_m_nutsd
1.104849201
vioscreen_m_organ
0.0
vioscreen_m_poult
2.171671159
vioscreen_m_soy
0.000876712
vioscreen_magnes
334.2411387
vioscreen_maltitol
0.0
vioscreen_maltose
2.9879728969999997
vioscreen_mangan
5.48994542
vioscreen_mannitol
0.438356164
vioscreen_methhis3
19.29750776
vioscreen_methion
1.988191955
vioscreen_mfa141
0.11484931
vioscreen_mfa161
1.113725971
vioscreen_mfa181
29.31987104
vioscreen_mfa201
0.278301375
vioscreen_mfa221
0.012328767
vioscreen_mfatot
31.072629499999998
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
11.61307122
vioscreen_nccglbr
143.5865903
vioscreen_nccglgr
100.4484161
vioscreen_niacin
22.60589148
vioscreen_niacineq
39.01997539
vioscreen_nitrogen
14.01808246
vioscreen_non_fried_fish_servings
1.5417299999999998
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.874986455
vioscreen_oxalic
287.4067637
vioscreen_oxalicm
299.6483733
vioscreen_pantothe
6.646548587000001
vioscreen_pectins
3.9219178080000003
vioscreen_pfa182
16.7799992
vioscreen_pfa183
1.7347947209999999
vioscreen_pfa184
0.0035068490000000003
vioscreen_pfa204
0.155369861
vioscreen_pfa205
0.028219179
vioscreen_pfa225
0.02791781
vioscreen_pfa226
0.081397258
vioscreen_pfatot
18.89191727
vioscreen_phenylal
3.760794694
vioscreen_phosphor
1252.739983
vioscreen_phytic
680.4860017000001
vioscreen_pinitol
0.002849315
vioscreen_potass
3405.2726030000003
vioscreen_procdate
10/28/15
vioscreen_proline
5.457944938
vioscreen_protanim
62.26860017
vioscreen_protein
86.64773116
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.38304259
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
234.0
vioscreen_retinol
248.85997430000003
vioscreen_rgrain
2.51800002
vioscreen_ribofla
2.1973427130000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.87784
vioscreen_satoco
0.181315069
vioscreen_selenium
120.188217
vioscreen_serine
3.881068734
vioscreen_sfa100
0.5024383960000001
vioscreen_sfa120
1.119150742
vioscreen_sfa140
2.31813714
vioscreen_sfa160
13.69323363
vioscreen_sfa170
0.114821928
vioscreen_sfa180
6.328574486
vioscreen_sfa200
0.173917828
vioscreen_sfa220
0.216410932
vioscreen_sfa40
0.575561607
vioscreen_sfa60
0.266904125
vioscreen_sfa80
0.264794504
vioscreen_sfatot
26.00881582
vioscreen_sodium
3384.209247
vioscreen_sorbitol
0.9523011090000001
vioscreen_srvid
20313.0
vioscreen_starch
62.70784996
vioscreen_started
8/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.24849369
vioscreen_sweet_servings
0.95342
vioscreen_tagatose
0.786657548
vioscreen_tfa161t
0.054027411
vioscreen_tfa181t
2.717917915
vioscreen_tfa182t
0.594821919
vioscreen_tgrain
4.14739706
vioscreen_thiamin
1.326219282
vioscreen_threonin
3.444685092
vioscreen_time
43.0
vioscreen_totaltfa
3.410630485
vioscreen_totcla
0.131589027
vioscreen_totfolat
414.7481592
vioscreen_totsugar
83.50138057
vioscreen_tryptoph
0.984438376
vioscreen_tyrosine
3.11432771
vioscreen_user_id
20313.0
vioscreen_v_drkgr
0.597917781
vioscreen_v_orange
0.414547939
vioscreen_v_other
1.64539728
vioscreen_v_potato
0.250931497
vioscreen_v_starcy
0.110136988
vioscreen_v_tomato
0.7333424190000001
vioscreen_v_total
3.752273852
vioscreen_valine
4.422630833
vioscreen_veg5_day
6.3
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.5
vioscreen_visit
1.0
vioscreen_vita_iu
18710.42877
vioscreen_vita_rae
1142.882705
vioscreen_vita_re
2036.906678
vioscreen_vitb12
3.496849248
vioscreen_vitb6
1.8975072569999998
vioscreen_vitc
161.211387
vioscreen_vitd
3.5537256530000003
vioscreen_vitd2
0.002520548
vioscreen_vitd3
3.551287257
vioscreen_vitd_iu
142.1490261
vioscreen_vite_iu
17.46789116
vioscreen_vitk
224.972988
vioscreen_water
5325.0568490000005
vioscreen_weight
Not provided
vioscreen_wgrain
1.629424798
vioscreen_whole_grain_servings
1.26649
vioscreen_xylitol
0.033917811
vioscreen_zinc
10.83583249
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
121.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)