American Gut Project; 10317.000027209
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633469
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027209
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27209
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
28.59
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-04-28
collection month
April
collection season
Spring
collection time
23:05
collection_timestamp
2015-04-28 23:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
189.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
41301b37476bd2651e128e9b58113ff58549a2bfe1c1e2d94c0c61588229261a5eb399988a12c641066e3f8afef023dabbfdb6ee3fe41aedf42eb316f99d2a58
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
41.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-87.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027209
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
e351b918ed7b0412
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
1.244630077
vioscreen_a_cal
139.29130990000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.971945399
vioscreen_addsugar
8.495341931
vioscreen_adsugtot
8.044628906
vioscreen_age
215.0
vioscreen_alanine
2.230766735
vioscreen_alcohol
17.59090459
vioscreen_alcohol_servings
1.24463
vioscreen_alphacar
86.39772046
vioscreen_alphtoce
9.404191861000001
vioscreen_alphtoco
8.259425166
vioscreen_arginine
3.011945165
vioscreen_ash
10.46813664
vioscreen_aspartam
0.0
vioscreen_aspartic
4.317425286000001
vioscreen_avcarb
105.0194563
vioscreen_bcodeid
Not provided
vioscreen_betacar
1035.554024
vioscreen_betacryp
155.9191032
vioscreen_betaine
104.3370184
vioscreen_betatoco
0.32816435899999996
vioscreen_biochana
0.007726028
vioscreen_bmi
Not provided
vioscreen_caffeine
167.43775680000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.01962
vioscreen_calcium_servings
1.3897
vioscreen_calories
1132.603339
vioscreen_carbo
115.2022902
vioscreen_cholest
98.75476241
vioscreen_choline
183.8390197
vioscreen_clac9t11
0.019013699
vioscreen_clat10c12
0.007780822
vioscreen_copper
1.052137067
vioscreen_coumest
0.143780831
vioscreen_cystine
0.5900821629999999
vioscreen_d_cheese
0.000246575
vioscreen_d_milk
0.019369861999999998
vioscreen_d_tot_soym
0.032849312
vioscreen_d_total
0.019616438
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.24534245300000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.008520591
vioscreen_discfat_oil
25.24457673
vioscreen_discfat_sol
8.963015036
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000575342
vioscreen_f_citmlb
0.99339725
vioscreen_f_nj_citmlb
0.239452059
vioscreen_f_nj_other
0.19961644
vioscreen_f_nj_total
0.439068478
vioscreen_f_other
0.19961644
vioscreen_f_total
1.193013648
vioscreen_fat
43.70085081
vioscreen_fiber
10.10347884
vioscreen_fibh2o
3.757589095
vioscreen_fibinso
6.319014207
vioscreen_finished
4/28/15
vioscreen_fish_servings
3.24942
vioscreen_fol_deqv
311.241845
vioscreen_fol_nat
184.43572350000002
vioscreen_fol_syn
74.62310039
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
1.58808
vioscreen_fried_food_servings
0.36164
vioscreen_frt5_day
1.8
vioscreen_frtsumm
2.4
vioscreen_fructose
13.894356
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.618629936
vioscreen_g_total
3.6822462939999996
vioscreen_g_whl
0.063616436
vioscreen_galactos
0.030493151
vioscreen_gammtoco
9.044000829
vioscreen_gender
false
vioscreen_genistn
0.299808262
vioscreen_glac
56.58731807
vioscreen_gltc
60.45917166
vioscreen_glucose
14.59295939
vioscreen_glutamic
8.716301236
vioscreen_glycine
2.176575209
vioscreen_glycitn
0.031616436
vioscreen_grams
2398.1934929999998
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.3
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
4.4
vioscreen_hei2010_score
66.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.4
vioscreen_hei2010_veg
3.6
vioscreen_hei2010_whole_fruit
4.8
vioscreen_hei2010_whole_grains
0.4
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
4.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
72.5
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
18.4
vioscreen_hei_veg
3.6
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.164082232
vioscreen_inositol
0.317808219
vioscreen_iron
8.185014447999999
vioscreen_isoleuc
1.832082252
vioscreen_isomalt
0.0
vioscreen_joules
4738.812671
vioscreen_juice_servings
1.5079200000000001
vioscreen_lactitol
0.0
vioscreen_lactose
0.285945192
vioscreen_legumes
0.054547945
vioscreen_leucine
3.2522190039999996
vioscreen_line_gi
258.1537029
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
711.7864298
vioscreen_lycopene
2770.216781
vioscreen_lysine
2.850382933
vioscreen_m_egg
0.064383567
vioscreen_m_fish_hi
0.572465745
vioscreen_m_fish_lo
1.279287678
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.791178079
vioscreen_m_mpf
3.330548012
vioscreen_m_nutsd
1.710520622
vioscreen_m_organ
0.0
vioscreen_m_poult
0.666301362
vioscreen_m_soy
0.015671234
vioscreen_magnes
196.5565497
vioscreen_maltitol
0.0
vioscreen_maltose
1.494575396
vioscreen_mangan
2.763040955
vioscreen_mannitol
0.077260287
vioscreen_methhis3
11.39235606
vioscreen_methion
0.976054821
vioscreen_mfa141
0.019095891
vioscreen_mfa161
0.397369886
vioscreen_mfa181
19.20164678
vioscreen_mfa201
0.382931519
vioscreen_mfa221
0.09789041
vioscreen_mfatot
20.17035798
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.177836045
vioscreen_nccglbr
84.31327055
vioscreen_nccglgr
58.97246361
vioscreen_niacin
14.54347977
vioscreen_niacineq
22.47432845
vioscreen_nitrogen
7.449315068
vioscreen_non_fried_fish_servings
1.66135
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7017808890000001
vioscreen_oxalic
133.9570527
vioscreen_oxalicm
156.2464041
vioscreen_pantothe
2.526493104
vioscreen_pectins
1.6555343
vioscreen_pfa182
10.63471145
vioscreen_pfa183
1.317314838
vioscreen_pfa184
0.025835617
vioscreen_pfa204
0.066273969
vioscreen_pfa205
0.109342465
vioscreen_pfa225
0.037534246
vioscreen_pfa226
0.21323288199999998
vioscreen_pfatot
12.46849449
vioscreen_phenylal
1.897561604
vioscreen_phosphor
579.580351
vioscreen_phytic
389.8763271
vioscreen_pinitol
0.001890411
vioscreen_potass
1754.040411
vioscreen_procdate
10/28/15
vioscreen_proline
2.607616686
vioscreen_protanim
25.38021725
vioscreen_protein
45.19125642
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.81167059
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
455.0
vioscreen_retinol
131.5046982
vioscreen_rgrain
3.36967138
vioscreen_ribofla
0.81323284
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.63175
vioscreen_satoco
0.181315069
vioscreen_selenium
75.57090646
vioscreen_serine
1.973013431
vioscreen_sfa100
0.025808219
vioscreen_sfa120
0.07852055299999999
vioscreen_sfa140
0.278465752
vioscreen_sfa160
4.918685453
vioscreen_sfa170
0.025561643999999998
vioscreen_sfa180
2.166137361
vioscreen_sfa200
0.203342469
vioscreen_sfa220
0.303424658
vioscreen_sfa40
0.023041095
vioscreen_sfa60
0.012273973
vioscreen_sfa80
0.012219178
vioscreen_sfatot
8.229314935
vioscreen_sodium
1818.8071920000002
vioscreen_sorbitol
0.38624664700000005
vioscreen_srvid
18606.0
vioscreen_starch
50.38771939
vioscreen_started
4/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.283779699999998
vioscreen_sweet_servings
0.023790000000000002
vioscreen_tagatose
0.10539725300000001
vioscreen_tfa161t
0.013232876999999999
vioscreen_tfa181t
1.330054881
vioscreen_tfa182t
0.14986302599999998
vioscreen_tgrain
3.5678630669999998
vioscreen_thiamin
0.919205423
vioscreen_threonin
1.60241114
vioscreen_time
32.0
vioscreen_totaltfa
1.4990682519999998
vioscreen_totcla
0.026794522
vioscreen_totfolat
259.05875430000003
vioscreen_totsugar
40.91687714
vioscreen_tryptoph
0.47545207799999994
vioscreen_tyrosine
1.393561627
vioscreen_user_id
18606.0
vioscreen_v_drkgr
0.09671232699999999
vioscreen_v_orange
0.00920548
vioscreen_v_other
0.39928768600000003
vioscreen_v_potato
0.17720548
vioscreen_v_starcy
0.0035342459999999996
vioscreen_v_tomato
0.160520548
vioscreen_v_total
0.846410882
vioscreen_valine
2.043040989
vioscreen_veg5_day
1.2
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.7
vioscreen_visit
1.0
vioscreen_vita_iu
2365.733562
vioscreen_vita_rae
227.89753849999997
vioscreen_vita_re
324.29060360000005
vioscreen_vitb12
2.784986355
vioscreen_vitb6
1.005698593
vioscreen_vitc
116.5054366
vioscreen_vitd
3.113370545
vioscreen_vitd2
0.035178083
vioscreen_vitd3
3.0782196460000004
vioscreen_vitd_iu
124.53482179999999
vioscreen_vite_iu
12.38016776
vioscreen_vitk
56.84084974
vioscreen_water
2183.7035960000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.198219174
vioscreen_whole_grain_servings
0.06362000000000001
vioscreen_xylitol
0.015369865
vioscreen_zinc
7.298494355
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
92.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)