American Gut Project; 10317.000026474
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633448
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026474
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
32.0
age_corrected
32.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26474
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1983.0
bmi
23.75
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
05/01/2015
collection month
May
collection season
Spring
collection time
10:45
collection_timestamp
2015-05-01 10:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
99.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
187.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
5be10b823e50b658f8163c56e69e8372dd4602fa72bef2975eaed046fbe49a25fd9340373d20015b2ceb5ae4113d950dda25816553250d8dffe59d3b36462935
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
47.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.3
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000026474
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
71b6f8b035f53ea9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.11676711
vioscreen_a_cal
392.5518836
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.2538901970000005
vioscreen_addsugar
28.00104078
vioscreen_adsugtot
26.33627194
vioscreen_age
215.0
vioscreen_alanine
3.5887401010000004
vioscreen_alcohol
46.15936965
vioscreen_alcohol_servings
3.1167700000000003
vioscreen_alphacar
694.0230307999999
vioscreen_alphtoce
14.06126124
vioscreen_alphtoco
12.92884873
vioscreen_arginine
4.353479171
vioscreen_ash
19.32167166
vioscreen_aspartam
0.0
vioscreen_aspartic
6.883835215
vioscreen_avcarb
188.9210616
vioscreen_bcodeid
Not provided
vioscreen_betacar
4740.6455479999995
vioscreen_betacryp
149.22197130000004
vioscreen_betaine
106.8936537
vioscreen_betatoco
0.472109525
vioscreen_biochana
0.007972601999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
166.06630990000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.2423799999999998
vioscreen_calcium_servings
2.96195
vioscreen_calories
2324.407192
vioscreen_carbo
208.7543236
vioscreen_cholest
279.6337543
vioscreen_choline
384.5321062
vioscreen_clac9t11
0.162904107
vioscreen_clat10c12
0.040767126
vioscreen_copper
1.330548012
vioscreen_coumest
0.14405479999999998
vioscreen_cystine
0.93049308
vioscreen_d_cheese
0.45117806200000005
vioscreen_d_milk
0.041506848
vioscreen_d_tot_soym
1.242383649
vioscreen_d_total
1.242383649
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.11079452699999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.890575336
vioscreen_discfat_oil
38.15438517
vioscreen_discfat_sol
43.87189373
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001150685
vioscreen_f_citmlb
0.68898629
vioscreen_f_nj_citmlb
0.364246567
vioscreen_f_nj_other
1.2859452759999999
vioscreen_f_nj_total
1.650219058
vioscreen_f_other
1.2859452759999999
vioscreen_f_total
1.97493144
vioscreen_fat
102.5251177
vioscreen_fiber
19.833811800000003
vioscreen_fibh2o
6.518576092000001
vioscreen_fibinso
13.30794494
vioscreen_finished
4/24/15
vioscreen_fish_servings
1.11846
vioscreen_fol_deqv
392.5308647
vioscreen_fol_nat
254.13901969999998
vioscreen_fol_syn
81.3468536
vioscreen_formontn
0.001808219
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.4
vioscreen_frtsumm
3.9
vioscreen_fructose
20.4833971
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.2070683730000002
vioscreen_g_total
3.906931587
vioscreen_g_whl
0.699863005
vioscreen_galactos
1.024273932
vioscreen_gammtoco
9.254794521
vioscreen_gender
false
vioscreen_genistn
0.07871233799999999
vioscreen_glac
80.84903146
vioscreen_gltc
87.75733626
vioscreen_glucose
19.3329329
vioscreen_glutamic
13.941340700000001
vioscreen_glycine
3.292027972
vioscreen_glycitn
0.006356164
vioscreen_grams
3746.5828770000003
vioscreen_hei2010_dairy
4.1
vioscreen_hei2010_empty_calories
13.4
vioscreen_hei2010_fatty_acids
5.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
2.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.1
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
2.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.0
vioscreen_hei_score
62.4
vioscreen_hei_sodium
6.5
vioscreen_hei_sol_fat_alc_add_sug
7.7
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
2.043561878
vioscreen_inositol
0.293232852
vioscreen_iron
10.84514996
vioscreen_isoleuc
3.181863027
vioscreen_isomalt
0.0
vioscreen_joules
9725.321233
vioscreen_juice_servings
0.64953
vioscreen_lactitol
0.0
vioscreen_lactose
11.73925915
vioscreen_legumes
0.070109584
vioscreen_leucine
5.712190978
vioscreen_line_gi
382.3163527
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
2031.4441780000002
vioscreen_lycopene
6336.863699
vioscreen_lysine
4.880658377
vioscreen_m_egg
0.614109572
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.215753425
vioscreen_m_meat
2.7934244230000003
vioscreen_m_mpf
3.758383388
vioscreen_m_nutsd
2.18673982
vioscreen_m_organ
0.0
vioscreen_m_poult
0.11191780400000001
vioscreen_m_soy
0.000767123
vioscreen_magnes
346.75854019999997
vioscreen_maltitol
0.0
vioscreen_maltose
2.495314841
vioscreen_mangan
3.966822292
vioscreen_mannitol
0.495753458
vioscreen_methhis3
15.30893087
vioscreen_methion
1.651013685
vioscreen_mfa141
0.12049316
vioscreen_mfa161
1.571753264
vioscreen_mfa181
41.63310413
vioscreen_mfa201
0.477397302
vioscreen_mfa221
0.069123292
vioscreen_mfatot
44.12413581
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.92884873
vioscreen_nccglbr
125.4304259
vioscreen_nccglgr
87.74151862
vioscreen_niacin
20.38504254
vioscreen_niacineq
32.55126284
vioscreen_nitrogen
12.16386451
vioscreen_non_fried_fish_servings
1.11846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.396986201
vioscreen_oxalic
245.29195209999997
vioscreen_oxalicm
238.861387
vioscreen_pantothe
5.151671862
vioscreen_pectins
3.511781625
vioscreen_pfa182
16.94800005
vioscreen_pfa183
1.185671203
vioscreen_pfa184
0.015863013999999998
vioscreen_pfa204
0.102712333
vioscreen_pfa205
0.053671239
vioscreen_pfa225
0.02391781
vioscreen_pfa226
0.117945214
vioscreen_pfatot
18.52975305
vioscreen_phenylal
3.2822743869999997
vioscreen_phosphor
1296.017123
vioscreen_phytic
674.8425513999999
vioscreen_pinitol
0.0020273970000000002
vioscreen_potass
3355.79589
vioscreen_procdate
10/28/15
vioscreen_proline
4.936356218
vioscreen_protanim
47.48859696
vioscreen_protein
74.2385167
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.73676959
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
462.0
vioscreen_retinol
251.7803082
vioscreen_rgrain
2.985506742
vioscreen_ribofla
1.768492983
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.83416
vioscreen_satoco
0.0
vioscreen_selenium
113.1769264
vioscreen_serine
3.5241639019999997
vioscreen_sfa100
0.634219319
vioscreen_sfa120
0.6975068809999999
vioscreen_sfa140
2.656082112
vioscreen_sfa160
17.90441058
vioscreen_sfa170
0.176082183
vioscreen_sfa180
7.587809691
vioscreen_sfa200
0.293315062
vioscreen_sfa220
0.378657553
vioscreen_sfa40
0.796410882
vioscreen_sfa60
0.44912322600000004
vioscreen_sfa80
0.283917822
vioscreen_sfatot
32.28375428
vioscreen_sodium
2945.341096
vioscreen_sorbitol
0.955506709
vioscreen_srvid
18591.0
vioscreen_starch
67.47758455
vioscreen_started
4/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.54548106
vioscreen_sweet_servings
0.047580000000000004
vioscreen_tagatose
5.588602981
vioscreen_tfa161t
0.04884931
vioscreen_tfa181t
1.988739766
vioscreen_tfa182t
0.31484931
vioscreen_tgrain
4.279479479
vioscreen_thiamin
1.298383823
vioscreen_threonin
2.7525755160000003
vioscreen_time
27.0
vioscreen_totaltfa
2.362848987
vioscreen_totcla
0.203643799
vioscreen_totfolat
335.48574489999993
vioscreen_totsugar
87.524497
vioscreen_tryptoph
0.73016441
vioscreen_tyrosine
2.542548025
vioscreen_user_id
18591.0
vioscreen_v_drkgr
0.11397259900000001
vioscreen_v_orange
0.23131506899999998
vioscreen_v_other
1.030191751
vioscreen_v_potato
0.27758904
vioscreen_v_starcy
0.006821918000000001
vioscreen_v_tomato
0.376712329
vioscreen_v_total
2.036739652
vioscreen_valine
3.829890839
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
9441.904795
vioscreen_vita_rae
681.9715325
vioscreen_vita_re
1112.158904
vioscreen_vitb12
4.063945446
vioscreen_vitb6
2.1606848309999998
vioscreen_vitc
146.6347603
vioscreen_vitd
4.022794373
vioscreen_vitd2
0.001534247
vioscreen_vitd3
4.021287725
vioscreen_vitd_iu
160.9117749
vioscreen_vite_iu
19.28282053
vioscreen_vitk
94.70840111
vioscreen_water
3314.483219
vioscreen_weight
Not provided
vioscreen_wgrain
1.293999993
vioscreen_whole_grain_servings
0.69986
vioscreen_xylitol
0.059287675
vioscreen_zinc
10.83402718
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
83.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)