American Gut Project; 10317.000029472
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633726
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029472
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
75.0
age_corrected
75.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29472
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1940.0
bmi
23.05
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
09:25
collection_timestamp
2015-07-07 09:25
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
Ireland
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Not provided
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
163.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
14cbf9a8831a182ad8f4de4f7258e1087d8d92a0ba0b9d6b223ed25780ea41fcb44cef135b5ff1709fddc534ca38a76c01b039d665278e744c334e02a26d59ba
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
53.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029472
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
fab95ce67433a3ad
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.725397314
vioscreen_addsugar
20.83865716
vioscreen_adsugtot
13.77627355
vioscreen_age
215.0
vioscreen_alanine
1.430712222
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
2386.153253
vioscreen_alphtoce
10.56895936
vioscreen_alphtoco
9.866248395
vioscreen_arginine
2.19030143
vioscreen_ash
10.11388993
vioscreen_aspartam
0.0
vioscreen_aspartic
3.4673152560000005
vioscreen_avcarb
103.49472390000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
7705.681506999999
vioscreen_betacryp
123.69399609999999
vioscreen_betaine
15.71934263
vioscreen_betatoco
0.298191771
vioscreen_biochana
0.006575342
vioscreen_bmi
Not provided
vioscreen_caffeine
4.6711231810000005
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.34126
vioscreen_calcium_servings
1.54003
vioscreen_calories
1030.1651539999998
vioscreen_carbo
127.1084225
vioscreen_cholest
125.8193493
vioscreen_choline
210.2129923
vioscreen_clac9t11
0.014657534
vioscreen_clat10c12
0.003945206
vioscreen_copper
1.0034520820000001
vioscreen_coumest
0.7714246779999999
vioscreen_cystine
0.38898629
vioscreen_d_cheese
0.29282193100000004
vioscreen_d_milk
0.048465755
vioscreen_d_tot_soym
1.1181095490000001
vioscreen_d_total
0.341260267
vioscreen_d_yogurt
0.0
vioscreen_daidzein
6.2339181560000005
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.103863024
vioscreen_discfat_oil
25.35748074
vioscreen_discfat_sol
8.568164062000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001315068
vioscreen_f_citmlb
0.19002739899999999
vioscreen_f_nj_citmlb
0.18682192399999997
vioscreen_f_nj_other
2.318931433
vioscreen_f_nj_total
2.505753358
vioscreen_f_other
2.384876659
vioscreen_f_total
2.574904016
vioscreen_fat
50.66337222
vioscreen_fiber
23.61405447
vioscreen_fibh2o
5.297013458
vioscreen_fibinso
18.46528922
vioscreen_finished
7/4/15
vioscreen_fish_servings
0.053270000000000005
vioscreen_fol_deqv
501.64957189999996
vioscreen_fol_nat
236.1424872
vioscreen_fol_syn
156.17183219999998
vioscreen_formontn
0.0023287670000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.1
vioscreen_frtsumm
5.1
vioscreen_fructose
21.26953259
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.052356165999999996
vioscreen_g_total
1.196876756
vioscreen_g_whl
1.144520548
vioscreen_galactos
0.15208217699999999
vioscreen_gammtoco
5.718739967
vioscreen_gender
false
vioscreen_genistn
7.79561684
vioscreen_glac
43.97523277
vioscreen_gltc
51.30909675
vioscreen_glucose
17.68841101
vioscreen_glutamic
5.887233786
vioscreen_glycine
1.291369796
vioscreen_glycitn
0.7756986440000001
vioscreen_grams
1920.4804789999998
vioscreen_hei2010_dairy
8.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
92.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
87.7
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
0.743479522
vioscreen_inositol
0.12528767
vioscreen_iron
11.70501258
vioscreen_isoleuc
1.259123418
vioscreen_isomalt
0.0
vioscreen_joules
4310.208904
vioscreen_juice_servings
0.13833
vioscreen_lactitol
0.0
vioscreen_lactose
0.8531232440000001
vioscreen_legumes
0.0
vioscreen_leucine
2.2560546880000003
vioscreen_line_gi
298.5081336
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2835.480479
vioscreen_lycopene
154.59475600000002
vioscreen_lysine
1.59599994
vioscreen_m_egg
0.5701917670000001
vioscreen_m_fish_hi
0.0075890409999999995
vioscreen_m_fish_lo
0.02279452
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.030383562000000003
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.776849282
vioscreen_magnes
241.8646404
vioscreen_maltitol
0.0
vioscreen_maltose
6.435617107000001
vioscreen_mangan
2.903615957
vioscreen_mannitol
1.010602726
vioscreen_methhis3
0.0
vioscreen_methion
0.534383486
vioscreen_mfa141
0.032191781
vioscreen_mfa161
0.596219123
vioscreen_mfa181
24.14391588
vioscreen_mfa201
0.262246579
vioscreen_mfa221
0.002958904
vioscreen_mfatot
25.17852098
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.866248395
vioscreen_nccglbr
74.24866224
vioscreen_nccglgr
51.94485231
vioscreen_niacin
13.55383535
vioscreen_niacineq
19.41901354
vioscreen_nitrogen
5.315753425
vioscreen_non_fried_fish_servings
0.053270000000000005
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.595041103
vioscreen_oxalic
155.69364299999998
vioscreen_oxalicm
160.6526541
vioscreen_pantothe
3.0976438760000002
vioscreen_pectins
4.539945754
vioscreen_pfa182
9.582466021
vioscreen_pfa183
0.5702739139999999
vioscreen_pfa184
0.001150685
vioscreen_pfa204
0.048520545
vioscreen_pfa205
0.007917809
vioscreen_pfa225
0.002520548
vioscreen_pfa226
0.013178083
vioscreen_pfatot
10.53021926
vioscreen_phenylal
1.45649297
vioscreen_phosphor
682.776113
vioscreen_phytic
688.5805651000001
vioscreen_pinitol
0.036657535
vioscreen_potass
1889.689212
vioscreen_procdate
10/28/15
vioscreen_proline
1.8091233340000001
vioscreen_protanim
7.413726054
vioscreen_protein
31.6592332
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.24562018
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
321.0
vioscreen_retinol
274.940518
vioscreen_rgrain
0.33660274100000004
vioscreen_ribofla
1.049534293
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.5712599999999997
vioscreen_satoco
0.0
vioscreen_selenium
49.88148009
vioscreen_serine
1.683917822
vioscreen_sfa100
0.148164378
vioscreen_sfa120
0.19175344
vioscreen_sfa140
0.654547955
vioscreen_sfa160
6.974657533999999
vioscreen_sfa170
0.032356163
vioscreen_sfa180
1.9997535180000001
vioscreen_sfa200
0.212301385
vioscreen_sfa220
0.354136971
vioscreen_sfa40
0.157260268
vioscreen_sfa60
0.08838355699999999
vioscreen_sfa80
0.06257534299999999
vioscreen_sfatot
11.12714978
vioscreen_sodium
1412.54786
vioscreen_sorbitol
1.759369983
vioscreen_srvid
20065.0
vioscreen_starch
28.83879762
vioscreen_started
7/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.17992027
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.02739726
vioscreen_tfa161t
0.019260273
vioscreen_tfa181t
0.373287671
vioscreen_tfa182t
0.057972602000000005
vioscreen_tgrain
1.574986288
vioscreen_thiamin
0.835397464
vioscreen_threonin
1.19569861
vioscreen_time
20.0
vioscreen_totaltfa
0.44906846100000003
vioscreen_totcla
0.018657535
vioscreen_totfolat
392.3142551
vioscreen_totsugar
62.23145334
vioscreen_tryptoph
0.351123298
vioscreen_tyrosine
1.035698627
vioscreen_user_id
20065.0
vioscreen_v_drkgr
0.47539727200000004
vioscreen_v_orange
0.51446575
vioscreen_v_other
0.763452065
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.416739728
vioscreen_v_tomato
0.033260275
vioscreen_v_total
2.203342553
vioscreen_valine
1.5115889880000002
vioscreen_veg5_day
5.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.4
vioscreen_visit
1.0
vioscreen_vita_iu
15849.6726
vioscreen_vita_rae
1021.657449
vioscreen_vita_re
1768.3753420000003
vioscreen_vitb12
1.757178069
vioscreen_vitb6
1.425205513
vioscreen_vitc
104.4016695
vioscreen_vitd
2.920575369
vioscreen_vitd2
0.6856986270000001
vioscreen_vitd3
2.234849235
vioscreen_vitd_iu
116.82301480000001
vioscreen_vite_iu
14.71345115
vioscreen_vitk
136.2884739
vioscreen_water
1705.415582
vioscreen_weight
Not provided
vioscreen_wgrain
1.238383588
vioscreen_whole_grain_servings
1.14452
vioscreen_xylitol
0.033698631
vioscreen_zinc
6.878656757999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)