American Gut Project; 10317.000028202
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633940
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028202
acid_reflux
Not provided
acne medication
false
acne_medication_otc
Not provided
add_adhd
I do not have this condition
age cat
70+
age years
76.0
age_corrected
76.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28202
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1939.0
bmi
19.92
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
07:50
collection_timestamp
2015-07-28 07:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
Spain
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
71.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Not provided
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1230ac0d8c61dda299307f2d4012c38936341bb454cfc274d70fee90c4ac73a7effb449fd4a60545e69a183f2bb9493b6e3e84131eaa1138458ab3b9a66161c1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
52.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Hispanic
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028202
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
2169122c672aab55
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.34043836200000005
vioscreen_a_cal
42.4997271
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.240027692
vioscreen_addsugar
16.30307015
vioscreen_adsugtot
14.36660156
vioscreen_age
215.0
vioscreen_alanine
3.056137628
vioscreen_alcohol
5.330274106
vioscreen_alcohol_servings
0.34044
vioscreen_alphacar
1360.76738
vioscreen_alphtoce
9.702739726
vioscreen_alphtoco
8.965014314
vioscreen_arginine
3.6315339389999997
vioscreen_ash
16.62454918
vioscreen_aspartam
0.0
vioscreen_aspartic
6.598383321
vioscreen_avcarb
141.9489833
vioscreen_bcodeid
Not provided
vioscreen_betacar
7133.280822
vioscreen_betacryp
237.4411601
vioscreen_betaine
88.7922089
vioscreen_betatoco
0.30326026
vioscreen_biochana
0.005452055
vioscreen_bmi
Not provided
vioscreen_caffeine
125.18263059999998
vioscreen_calcium
true
vioscreen_calcium_avg
35.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
3.00945
vioscreen_calcium_servings
4.00079
vioscreen_calories
1642.1433220000001
vioscreen_carbo
160.2827804
vioscreen_cholest
266.7418022
vioscreen_choline
326.9896618
vioscreen_clac9t11
0.155643839
vioscreen_clat10c12
0.026191777000000003
vioscreen_copper
1.2576712829999999
vioscreen_coumest
0.039917807
vioscreen_cystine
0.8635616770000001
vioscreen_d_cheese
0.789780875
vioscreen_d_milk
2.07726014
vioscreen_d_tot_soym
3.009452255
vioscreen_d_total
3.009452255
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.040547948
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.0326575709999999
vioscreen_discfat_oil
19.16246656
vioscreen_discfat_sol
43.12419467
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.124876717
vioscreen_f_nj_citmlb
0.119863014
vioscreen_f_nj_other
0.931753498
vioscreen_f_nj_total
1.051643852
vioscreen_f_other
0.933479539
vioscreen_f_total
1.058383555
vioscreen_fat
78.95591824
vioscreen_fiber
18.33303992
vioscreen_fibh2o
5.24024608
vioscreen_fibinso
13.10873957
vioscreen_finished
7/2/15
vioscreen_fish_servings
2.07712
vioscreen_fol_deqv
411.0521404
vioscreen_fol_nat
307.3388485
vioscreen_fol_syn
60.95896297
vioscreen_formontn
0.002054795
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
2.1
vioscreen_fructose
13.64967091
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
2.7399997660000004
vioscreen_g_total
4.504164772
vioscreen_g_whl
1.764219185
vioscreen_galactos
0.30268494100000004
vioscreen_gammtoco
6.067234321
vioscreen_gender
false
vioscreen_genistn
0.043369863
vioscreen_glac
57.70728810000001
vioscreen_gltc
63.50298052
vioscreen_glucose
11.796329199999999
vioscreen_glutamic
14.8640839
vioscreen_glycine
2.577781029
vioscreen_glycitn
0.003890411
vioscreen_grams
2564.9037670000002
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
14.9
vioscreen_hei2010_fatty_acids
1.7
vioscreen_hei2010_fruit
4.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.0
vioscreen_hei_grains
4.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.7
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
74.7
vioscreen_hei_sodium
4.2
vioscreen_hei_sol_fat_alc_add_sug
13.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.6
vioscreen_height
Not provided
vioscreen_histidin
1.948411247
vioscreen_inositol
0.055315075
vioscreen_iron
9.114795591
vioscreen_isoleuc
3.245698777
vioscreen_isomalt
0.0
vioscreen_joules
6870.724658
vioscreen_juice_servings
0.01351
vioscreen_lactitol
0.0
vioscreen_lactose
28.35703928
vioscreen_legumes
0.000630137
vioscreen_leucine
5.703725652999999
vioscreen_line_gi
290.58623719999997
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
3010.1273969999997
vioscreen_lycopene
5158.706507
vioscreen_lysine
4.881945968
vioscreen_m_egg
0.522438321
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.33476713
vioscreen_m_meat
0.36331507
vioscreen_m_mpf
2.552164156
vioscreen_m_nutsd
1.723424624
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.602794532
vioscreen_m_soy
0.000328767
vioscreen_magnes
308.89304369999996
vioscreen_maltitol
0.0
vioscreen_maltose
2.557780728
vioscreen_mangan
4.4150959169999995
vioscreen_mannitol
0.512301301
vioscreen_methhis3
8.447260274
vioscreen_methion
1.6477535719999998
vioscreen_mfa141
0.083589042
vioscreen_mfa161
0.970849359
vioscreen_mfa181
26.27118204
vioscreen_mfa201
0.401287633
vioscreen_mfa221
0.12295890699999999
vioscreen_mfatot
28.06553403
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.965014314
vioscreen_nccglbr
102.2184075
vioscreen_nccglgr
71.4978917
vioscreen_niacin
15.91104318
vioscreen_niacineq
29.83232556
vioscreen_nitrogen
11.62441005
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.872794206
vioscreen_oxalic
239.9534889
vioscreen_oxalicm
235.0604452
vioscreen_pantothe
5.557204823999999
vioscreen_pectins
3.168575423
vioscreen_pfa182
11.89188784
vioscreen_pfa183
1.4881917880000002
vioscreen_pfa184
0.029671232999999998
vioscreen_pfa204
0.11098630699999999
vioscreen_pfa205
0.09884932
vioscreen_pfa225
0.043095889000000005
vioscreen_pfa226
0.21342464100000003
vioscreen_pfatot
13.98728596
vioscreen_phenylal
3.34706864
vioscreen_phosphor
1418.6805650000001
vioscreen_phytic
593.838613
vioscreen_pinitol
0.002821918
vioscreen_potass
3045.673288
vioscreen_procdate
10/28/15
vioscreen_proline
4.994713185
vioscreen_protanim
48.08608198
vioscreen_protein
71.49994649
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.412248499999997
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
337.0
vioscreen_retinol
560.1819349
vioscreen_rgrain
3.047397394
vioscreen_ribofla
1.96939714
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.06099
vioscreen_satoco
0.0
vioscreen_selenium
107.5298801
vioscreen_serine
3.6727950419999997
vioscreen_sfa100
0.795095867
vioscreen_sfa120
0.925945125
vioscreen_sfa140
3.418082125
vioscreen_sfa160
15.08931534
vioscreen_sfa170
0.08709589300000001
vioscreen_sfa180
6.344877728999999
vioscreen_sfa200
0.18517809300000002
vioscreen_sfa220
0.29819175
vioscreen_sfa40
0.8620273540000001
vioscreen_sfa60
0.635643821
vioscreen_sfa80
0.560958904
vioscreen_sfatot
29.64216075
vioscreen_sodium
2512.527568
vioscreen_sorbitol
0.569424606
vioscreen_srvid
20037.0
vioscreen_starch
59.63892337
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.54054741
vioscreen_sweet_servings
0.15997999999999998
vioscreen_tagatose
1.456520561
vioscreen_tfa161t
0.057506849000000006
vioscreen_tfa181t
1.4913427069999998
vioscreen_tfa182t
0.418794564
vioscreen_tgrain
4.697480001000001
vioscreen_thiamin
1.275232937
vioscreen_threonin
2.758219345
vioscreen_time
43.0
vioscreen_totaltfa
2.136356218
vioscreen_totcla
0.181972598
vioscreen_totfolat
368.297774
vioscreen_totsugar
72.40956764
vioscreen_tryptoph
0.8352054959999999
vioscreen_tyrosine
2.723863241
vioscreen_user_id
20037.0
vioscreen_v_drkgr
0.501890376
vioscreen_v_orange
0.281863027
vioscreen_v_other
1.272849305
vioscreen_v_potato
0.095726034
vioscreen_v_starcy
0.021534247000000003
vioscreen_v_tomato
0.7750959
vioscreen_v_total
2.948931801
vioscreen_valine
3.851533738
vioscreen_veg5_day
6.4
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
15089.94795
vioscreen_vita_rae
1221.2136130000001
vioscreen_vita_re
1882.248459
vioscreen_vitb12
5.523780635
vioscreen_vitb6
1.600329088
vioscreen_vitc
134.5212757
vioscreen_vitd
12.32301343
vioscreen_vitd2
0.001041096
vioscreen_vitd3
12.32194456
vioscreen_vitd_iu
492.92053719999996
vioscreen_vite_iu
13.35536842
vioscreen_vitk
159.7198951
vioscreen_water
2241.623459
vioscreen_weight
Not provided
vioscreen_wgrain
1.650109529
vioscreen_whole_grain_servings
1.7642200000000001
vioscreen_xylitol
0.026000002
vioscreen_zinc
8.953122324
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
51.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)