American Gut Project; 10317.000028692
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633624
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028692
acid_reflux
Not provided
acne medication
true
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28692
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
22.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/07/2015
collection month
June
collection season
Summer
collection time
14:00
collection_timestamp
2015-06-07 14:00
consume_animal_products_abx
Yes
contraceptive
Yes, I use the NuvaRing
cosmetics_frequency
Never
country
USA
country of birth
Germany
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
17.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6937485b8ce293b3f04a35ef2888089dab3d4b87d4066eb13ceaea015094d2772a9a51b0a9cc021c63573f4e661ceef50e5d5eb541380aedd975ec85ff2b9e6b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
45.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.6
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028692
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
48ca609e83fa6097
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.462630139
vioscreen_a_cal
51.67169842
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.095835563
vioscreen_addsugar
42.33758829
vioscreen_adsugtot
38.03238442
vioscreen_age
215.0
vioscreen_alanine
4.2220826869999994
vioscreen_alcohol
6.662603007
vioscreen_alcohol_servings
0.46263000000000004
vioscreen_alphacar
1755.5621579999997
vioscreen_alphtoce
16.95227419
vioscreen_alphtoco
15.29682283
vioscreen_arginine
5.90317851
vioscreen_ash
24.32646618
vioscreen_aspartam
0.0
vioscreen_aspartic
9.27583476
vioscreen_avcarb
180.90051369999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
7352.382192
vioscreen_betacryp
261.639726
vioscreen_betaine
109.35347820000001
vioscreen_betatoco
0.564054808
vioscreen_biochana
0.057616435
vioscreen_bmi
Not provided
vioscreen_caffeine
109.8960295
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.868
vioscreen_calcium_servings
2.74244
vioscreen_calories
1929.794521
vioscreen_carbo
218.95580049999998
vioscreen_cholest
110.3423801
vioscreen_choline
332.04890839999996
vioscreen_clac9t11
0.027068493
vioscreen_clat10c12
0.007753424
vioscreen_copper
2.06495863
vioscreen_coumest
0.057780822
vioscreen_cystine
1.1365752759999999
vioscreen_d_cheese
0.160794517
vioscreen_d_milk
0.119589035
vioscreen_d_tot_soym
0.86800002
vioscreen_d_total
0.86800002
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
3.33104131
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.997479332
vioscreen_discfat_oil
46.51833262
vioscreen_discfat_sol
17.07205292
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.118082188
vioscreen_f_nj_citmlb
0.108958905
vioscreen_f_nj_other
0.448657519
vioscreen_f_nj_total
0.557616435
vioscreen_f_other
0.448657519
vioscreen_f_total
0.566712262
vioscreen_fat
79.21919414
vioscreen_fiber
37.76400096
vioscreen_fibh2o
8.647534514
vioscreen_fibinso
29.1640518
vioscreen_finished
6/6/15
vioscreen_fish_servings
2.45865
vioscreen_fol_deqv
548.4422517
vioscreen_fol_nat
437.95089900000005
vioscreen_fol_syn
64.93602847
vioscreen_formontn
0.006
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.1
vioscreen_fructose
17.23917487
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.285397548
vioscreen_g_total
3.5633424519999997
vioscreen_g_whl
1.277917982
vioscreen_galactos
0.8873972440000001
vioscreen_gammtoco
12.9507652
vioscreen_gender
false
vioscreen_genistn
4.272658257
vioscreen_glac
75.17035531
vioscreen_gltc
89.05540454
vioscreen_glucose
17.62766883
vioscreen_glutamic
17.03542514
vioscreen_glycine
3.947451908
vioscreen_glycitn
1.143588968
vioscreen_grams
2957.424658
vioscreen_hei2010_dairy
3.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.6
vioscreen_hei2010_whole_grains
4.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.8
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.5
vioscreen_hei_non_juice_frt
3.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
73.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.2
vioscreen_height
Not provided
vioscreen_histidin
2.400849476
vioscreen_inositol
0.087863013
vioscreen_iron
17.46462971
vioscreen_isoleuc
3.95115114
vioscreen_isomalt
0.0
vioscreen_joules
8074.254795000001
vioscreen_juice_servings
0.01819
vioscreen_lactitol
0.0
vioscreen_lactose
9.855753692
vioscreen_legumes
1.3429863080000002
vioscreen_leucine
6.903068145
vioscreen_line_gi
384.3247432
vioscreen_low_fat_dairy_serving
0.72729
vioscreen_lutzeax
4162.394863
vioscreen_lycopene
11926.51781
vioscreen_lysine
5.929068787
vioscreen_m_egg
0.23268493199999998
vioscreen_m_fish_hi
0.808520591
vioscreen_m_fish_lo
0.592767125
vioscreen_m_frank
0.875534183
vioscreen_m_meat
0.27663014
vioscreen_m_mpf
3.5372872969999998
vioscreen_m_nutsd
3.531452336
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9840547740000001
vioscreen_m_soy
0.478904118
vioscreen_magnes
446.922988
vioscreen_maltitol
0.0
vioscreen_maltose
3.146192075
vioscreen_mangan
5.143096171
vioscreen_mannitol
0.589780834
vioscreen_methhis3
10.07153387
vioscreen_methion
1.7574793990000002
vioscreen_mfa141
0.01049315
vioscreen_mfa161
0.8102739729999999
vioscreen_mfa181
36.32089844
vioscreen_mfa201
0.507616477
vioscreen_mfa221
0.132328765
vioscreen_mfatot
37.97016267
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.2012896
vioscreen_nccglbr
122.12904540000001
vioscreen_nccglgr
85.42489833
vioscreen_niacin
24.90435841
vioscreen_niacineq
41.68832406
vioscreen_nitrogen
15.16764368
vioscreen_non_fried_fish_servings
2.45865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.66084971
vioscreen_oxalic
401.8359161
vioscreen_oxalicm
336.13011560000007
vioscreen_pantothe
5.204575128
vioscreen_pectins
5.103150417
vioscreen_pfa182
17.49405501
vioscreen_pfa183
1.268959108
vioscreen_pfa184
0.029945204
vioscreen_pfa204
0.090301367
vioscreen_pfa205
0.09443837
vioscreen_pfa225
0.042027398
vioscreen_pfa226
0.226301366
vioscreen_pfatot
19.325917699999998
vioscreen_phenylal
4.2391233680000004
vioscreen_phosphor
1479.754966
vioscreen_phytic
1320.3773119999998
vioscreen_pinitol
0.0270137
vioscreen_potass
3697.3452049999996
vioscreen_procdate
10/28/15
vioscreen_proline
5.241781156
vioscreen_protanim
37.97241278
vioscreen_protein
92.08913741
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
54.10871147
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
405.0
vioscreen_retinol
88.35259525
vioscreen_rgrain
2.812082285
vioscreen_ribofla
1.492822266
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.25263
vioscreen_satoco
0.21082190899999997
vioscreen_selenium
127.80855090000001
vioscreen_serine
4.5126297619999995
vioscreen_sfa100
0.07682192
vioscreen_sfa120
0.154684929
vioscreen_sfa140
0.5758629789999999
vioscreen_sfa160
10.51350733
vioscreen_sfa170
0.031616443
vioscreen_sfa180
3.841479492
vioscreen_sfa200
0.358931492
vioscreen_sfa220
0.5813972789999999
vioscreen_sfa40
0.095835615
vioscreen_sfa60
0.031013698
vioscreen_sfa80
0.040493153
vioscreen_sfatot
16.64937125
vioscreen_sodium
4738.063699
vioscreen_sorbitol
0.369835631
vioscreen_srvid
18842.0
vioscreen_starch
81.50630886
vioscreen_started
6/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.32068172
vioscreen_sweet_servings
0.2318
vioscreen_tagatose
4.925150498
vioscreen_tfa161t
0.021506848999999998
vioscreen_tfa181t
0.7272054590000001
vioscreen_tfa182t
0.17512330399999998
vioscreen_tgrain
4.197067637
vioscreen_thiamin
1.6266028000000001
vioscreen_threonin
3.414794587
vioscreen_time
19.0
vioscreen_totaltfa
0.997232683
vioscreen_totcla
0.036109585
vioscreen_totfolat
502.88591610000003
vioscreen_totsugar
81.32479131
vioscreen_tryptoph
1.006986268
vioscreen_tyrosine
3.0240819639999996
vioscreen_user_id
18842.0
vioscreen_v_drkgr
0.42934248399999997
vioscreen_v_orange
0.376356151
vioscreen_v_other
1.7755615230000001
vioscreen_v_potato
0.072657536
vioscreen_v_starcy
0.107342467
vioscreen_v_tomato
0.683780827
vioscreen_v_total
3.4451509660000004
vioscreen_valine
4.601506649
vioscreen_veg5_day
5.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.6
vioscreen_visit
1.0
vioscreen_vita_iu
14229.009590000001
vioscreen_vita_rae
785.102226
vioscreen_vita_re
1481.8513699999999
vioscreen_vitb12
3.065232368
vioscreen_vitb6
2.243013732
vioscreen_vitc
171.0900043
vioscreen_vitd
4.294274401
vioscreen_vitd2
0.002383562
vioscreen_vitd3
4.2919179419999995
vioscreen_vitd_iu
171.770976
vioscreen_vite_iu
22.87764341
vioscreen_vitk
214.3319991
vioscreen_water
2539.6345890000002
vioscreen_weight
Not provided
vioscreen_wgrain
1.385013695
vioscreen_whole_grain_servings
1.2779200000000002
vioscreen_xylitol
0.025561643999999998
vioscreen_zinc
12.77153521
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)