American Gut Project; 10317.000031473
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634321
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031473
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031473
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1951.0
bmi
25.96
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/12/2015
collection month
August
collection season
Summer
collection time
15:30
collection_timestamp
2015-08-12 15:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
77.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Not provided
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
f1f5249b772249407ac77dd6555b5ecc715a77c3869827f9817dfa01f292de089c7b9907feb2da49c56555289f12765337aee77efd6e0ffb318787967253f21c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
39.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031473
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
ae0705a7646d9ba3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.551698617
vioscreen_a_cal
67.42095997
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.531479425
vioscreen_addsugar
21.79101161
vioscreen_adsugtot
19.55101402
vioscreen_age
215.0
vioscreen_alanine
3.5714241760000003
vioscreen_alcohol
8.26430129
vioscreen_alcohol_servings
0.5517
vioscreen_alphacar
130.2864084
vioscreen_alphtoce
10.31937005
vioscreen_alphtoco
8.883561644
vioscreen_arginine
4.176000308
vioscreen_ash
15.54230121
vioscreen_aspartam
242.95721319999998
vioscreen_aspartic
6.4521644910000004
vioscreen_avcarb
125.6901541
vioscreen_bcodeid
Not provided
vioscreen_betacar
3359.1547950000004
vioscreen_betacryp
29.29328446
vioscreen_betaine
160.4479773
vioscreen_betatoco
0.407534247
vioscreen_biochana
0.003315068
vioscreen_bmi
Not provided
vioscreen_caffeine
81.3770655
vioscreen_calcium
true
vioscreen_calcium_avg
357.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
5
vioscreen_calcium_from_dairy_servings
0.46248999999999996
vioscreen_calcium_servings
1.58622
vioscreen_calories
1412.4951199999998
vioscreen_carbo
141.1431507
vioscreen_cholest
171.3462543
vioscreen_choline
256.6791738
vioscreen_clac9t11
0.048027399000000005
vioscreen_clat10c12
0.011260273999999999
vioscreen_copper
1.061205637
vioscreen_coumest
0.000767123
vioscreen_cystine
0.912191731
vioscreen_d_cheese
0.32421918899999996
vioscreen_d_milk
0.080712326
vioscreen_d_tot_soym
0.462493186
vioscreen_d_total
0.462493186
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.509452005
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.617589329
vioscreen_discfat_oil
25.44136879
vioscreen_discfat_sol
19.53915079
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0009315069999999999
vioscreen_f_citmlb
0.294876705
vioscreen_f_nj_citmlb
0.287095893
vioscreen_f_nj_other
0.274630131
vioscreen_f_nj_total
0.561753406
vioscreen_f_other
0.274630131
vioscreen_f_total
0.5695342179999999
vioscreen_fat
58.15989405
vioscreen_fiber
15.36821757
vioscreen_fibh2o
3.811452202
vioscreen_fibinso
11.57879388
vioscreen_finished
8/12/15
vioscreen_fish_servings
3.21942
vioscreen_fol_deqv
321.01804369999996
vioscreen_fol_nat
187.0781892
vioscreen_fol_syn
78.75647474
vioscreen_formontn
0.001068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.1
vioscreen_fructose
9.814274533999999
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.56369863
vioscreen_g_total
5.316602231
vioscreen_g_whl
1.75290427
vioscreen_galactos
0.179671217
vioscreen_gammtoco
11.47161548
vioscreen_gender
false
vioscreen_genistn
0.70506851
vioscreen_glac
62.72442744
vioscreen_gltc
69.05229024
vioscreen_glucose
10.29378278
vioscreen_glutamic
13.56246656
vioscreen_glycine
3.286081978
vioscreen_glycitn
0.146657541
vioscreen_grams
1943.779452
vioscreen_hei2010_dairy
2.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
75.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.3
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
2.5
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.5
vioscreen_hei_score
75.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.1
vioscreen_height
Not provided
vioscreen_histidin
1.9556165719999998
vioscreen_inositol
0.077561653
vioscreen_iron
10.65504067
vioscreen_isoleuc
3.118602512
vioscreen_isomalt
0.0
vioscreen_joules
5909.876027
vioscreen_juice_servings
0.01551
vioscreen_lactitol
0.0
vioscreen_lactose
2.7848766589999996
vioscreen_legumes
0.038328766
vioscreen_leucine
5.317178136
vioscreen_line_gi
305.0486301
vioscreen_low_fat_dairy_serving
0.057510000000000006
vioscreen_lutzeax
4318.47637
vioscreen_lycopene
6405.309589
vioscreen_lysine
4.85438316
vioscreen_m_egg
0.142794518
vioscreen_m_fish_hi
1.3215890540000002
vioscreen_m_fish_lo
0.5132328820000001
vioscreen_m_frank
2.359917795
vioscreen_m_meat
0.794849302
vioscreen_m_mpf
6.051096292
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
0.0
vioscreen_m_poult
1.061589071
vioscreen_m_soy
0.16315068300000002
vioscreen_magnes
246.3147688
vioscreen_maltitol
0.0
vioscreen_maltose
2.487095997
vioscreen_mangan
3.796192075
vioscreen_mannitol
0.20616438399999998
vioscreen_methhis3
18.92172651
vioscreen_methion
1.6402467490000001
vioscreen_mfa141
0.040876715
vioscreen_mfa161
0.7883561640000001
vioscreen_mfa181
20.1620251
vioscreen_mfa201
0.43526026100000004
vioscreen_mfa221
0.24567124899999998
vioscreen_mfatot
21.83342118
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
8.801972522
vioscreen_nccglbr
102.0807791
vioscreen_nccglgr
71.41092145
vioscreen_niacin
22.09495933
vioscreen_niacineq
35.33325664
vioscreen_nitrogen
11.82550567
vioscreen_non_fried_fish_servings
3.21942
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.311835135
vioscreen_oxalic
224.55496580000002
vioscreen_oxalicm
218.73146400000002
vioscreen_pantothe
3.406383107
vioscreen_pectins
1.995835396
vioscreen_pfa182
14.79049524
vioscreen_pfa183
1.617560901
vioscreen_pfa184
0.054821918
vioscreen_pfa204
0.124794529
vioscreen_pfa205
0.18142464
vioscreen_pfa225
0.079424652
vioscreen_pfa226
0.37997256799999996
vioscreen_pfatot
17.31909916
vioscreen_phenylal
3.01561597
vioscreen_phosphor
998.1401541000001
vioscreen_phytic
573.5410531
vioscreen_pinitol
0.011287671
vioscreen_potass
2078.44863
vioscreen_procdate
10/28/15
vioscreen_proline
4.100794628
vioscreen_protanim
47.55942851
vioscreen_protein
72.38235766
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.82287832
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
211.0
vioscreen_retinol
132.9369435
vioscreen_rgrain
3.401123381
vioscreen_ribofla
1.134493224
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.17236
vioscreen_satoco
0.181315069
vioscreen_selenium
112.8983091
vioscreen_serine
3.0535340189999998
vioscreen_sfa100
0.155589044
vioscreen_sfa120
0.35556168200000005
vioscreen_sfa140
0.9861370770000001
vioscreen_sfa160
8.298712409
vioscreen_sfa170
0.062136992
vioscreen_sfa180
3.561178631
vioscreen_sfa200
0.17210959899999997
vioscreen_sfa220
0.22958907
vioscreen_sfa40
0.17660273699999998
vioscreen_sfa60
0.078767123
vioscreen_sfa80
0.083589047
vioscreen_sfatot
14.4310975
vioscreen_sodium
3336.292466
vioscreen_sorbitol
0.218739737
vioscreen_srvid
20381.0
vioscreen_starch
72.61970783
vioscreen_started
8/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.69432791
vioscreen_sweet_servings
0.3726
vioscreen_tagatose
0.536082229
vioscreen_tfa161t
0.024410961000000002
vioscreen_tfa181t
1.400602325
vioscreen_tfa182t
0.296794505
vioscreen_tgrain
5.459479345
vioscreen_thiamin
1.317451874
vioscreen_threonin
2.715424671
vioscreen_time
52.0
vioscreen_totaltfa
1.780438316
vioscreen_totcla
0.060000004
vioscreen_totfolat
265.8346747
vioscreen_totsugar
41.73824647
vioscreen_tryptoph
0.7946575840000001
vioscreen_tyrosine
2.342301544
vioscreen_user_id
20381.0
vioscreen_v_drkgr
0.413178076
vioscreen_v_orange
0.027232876
vioscreen_v_other
0.531260242
vioscreen_v_potato
0.339808216
vioscreen_v_starcy
0.0023287670000000003
vioscreen_v_tomato
0.46739727700000006
vioscreen_v_total
1.781205185
vioscreen_valine
3.416411601
vioscreen_veg5_day
2.4
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.6
vioscreen_visit
1.0
vioscreen_vita_iu
6174.79726
vioscreen_vita_rae
419.5155822
vioscreen_vita_re
706.0945634
vioscreen_vitb12
3.501534407
vioscreen_vitb6
1.5467402209999999
vioscreen_vitc
64.34628104
vioscreen_vitd
6.69635595
vioscreen_vitd2
0.0014246570000000002
vioscreen_vitd3
6.694986087
vioscreen_vitd_iu
267.854238
vioscreen_vite_iu
13.31813731
vioscreen_vitk
214.16132280000002
vioscreen_water
1661.436815
vioscreen_weight
Not provided
vioscreen_wgrain
2.058356298
vioscreen_whole_grain_servings
1.7529
vioscreen_xylitol
0.017890415
vioscreen_zinc
8.127506287000001
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Regularly (3-5 times/week)