American Gut Project; 10317.000020425
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632431
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020425
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20425
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1956.0
bmi
20.82
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2014-12-19
collection month
December
collection season
Winter
collection time
09:15
collection_timestamp
2014-12-19 09:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1619.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d0607eb4029d3f0416d3efbfd6ec35b469d878f8fbbd48b78f2775d9db10d176505184df7c6bc24911ec9004b1a8d87397e06e7ed316d313846e54162661b4ac
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
40.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020425
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
5060c60eb116d4d8
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.681561656
vioscreen_a_cal
85.08454623
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.844493124
vioscreen_addsugar
10.89386237
vioscreen_adsugtot
10.03641107
vioscreen_age
214.0
vioscreen_alanine
3.71808179
vioscreen_alcohol
10.65610954
vioscreen_alcohol_servings
0.68156
vioscreen_alphacar
141.4966717
vioscreen_alphtoce
20.8922477
vioscreen_alphtoco
19.81969713
vioscreen_arginine
4.944383428
vioscreen_ash
16.21238362
vioscreen_aspartam
0.0
vioscreen_aspartic
7.008602445
vioscreen_avcarb
44.373284999999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
11672.28767
vioscreen_betacryp
219.2184075
vioscreen_betaine
51.9145976
vioscreen_betatoco
0.44457531200000006
vioscreen_biochana
0.0018630139999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
118.8289598
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.012440000000000001
vioscreen_calcium_servings
1.3703
vioscreen_calories
1777.2571920000003
vioscreen_carbo
61.35552761
vioscreen_cholest
243.9777397
vioscreen_choline
318.22671230000003
vioscreen_clac9t11
0.172958917
vioscreen_clat10c12
0.047534253
vioscreen_copper
1.81646578
vioscreen_coumest
0.000630137
vioscreen_cystine
0.810082172
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.012438356000000001
vioscreen_d_tot_soym
0.012438356000000001
vioscreen_d_total
0.012438356000000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.000356164
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.000383602
vioscreen_discfat_oil
70.74718001
vioscreen_discfat_sol
36.01101509
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000109589
vioscreen_f_citmlb
0.054958908
vioscreen_f_nj_citmlb
0.04109589
vioscreen_f_nj_other
0.382602723
vioscreen_f_nj_total
0.42369861299999995
vioscreen_f_other
0.382602723
vioscreen_f_total
0.437561662
vioscreen_fat
137.1538313
vioscreen_fiber
16.98314962
vioscreen_fibh2o
2.999013404
vioscreen_fibinso
14.07432845
vioscreen_finished
10/13/14
vioscreen_fish_servings
4.75712
vioscreen_fol_deqv
394.1239726
vioscreen_fol_nat
394.1239726
vioscreen_fol_syn
0.0
vioscreen_formontn
0.002356164
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.9
vioscreen_fructose
7.095151969
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.053972605
vioscreen_g_total
0.053972605
vioscreen_g_whl
0.0
vioscreen_galactos
0.072109588
vioscreen_gammtoco
8.843562045
vioscreen_gender
false
vioscreen_genistn
0.005972603000000001
vioscreen_glac
3.74476703
vioscreen_gltc
4.63383555
vioscreen_glucose
7.027478863
vioscreen_glutamic
11.34780875
vioscreen_glycine
3.5724381960000002
vioscreen_glycitn
0.0
vioscreen_grams
3083.749315
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
19.4
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.5
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
54.4
vioscreen_hei_sodium
2.9
vioscreen_hei_sol_fat_alc_add_sug
16.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.962575416
vioscreen_inositol
0.08736986699999999
vioscreen_iron
9.022684343
vioscreen_isoleuc
2.9499725760000004
vioscreen_isomalt
0.0
vioscreen_joules
7436.047259999999
vioscreen_juice_servings
0.02775
vioscreen_lactitol
0.0
vioscreen_lactose
0.24512329100000002
vioscreen_legumes
0.0
vioscreen_leucine
5.070904123
vioscreen_line_gi
44.87616385
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19035.26712
vioscreen_lycopene
2026.3195210000001
vioscreen_lysine
5.009781009
vioscreen_m_egg
0.005863014000000001
vioscreen_m_fish_hi
2.2850137790000002
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.11873972599999999
vioscreen_m_meat
2.197725981
vioscreen_m_mpf
6.195534567999999
vioscreen_m_nutsd
3.427342412
vioscreen_m_organ
0.29328768
vioscreen_m_poult
0.874876676
vioscreen_m_soy
0.000136986
vioscreen_magnes
310.4611943
vioscreen_maltitol
0.0
vioscreen_maltose
0.152356166
vioscreen_mangan
3.739643755
vioscreen_mannitol
0.26408219
vioscreen_methhis3
21.45101402
vioscreen_methion
1.574849168
vioscreen_mfa141
0.086849317
vioscreen_mfa161
1.96443841
vioscreen_mfa181
58.91896404
vioscreen_mfa201
1.088657578
vioscreen_mfa221
0.440356194
vioscreen_mfatot
62.63885381
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
19.81969713
vioscreen_nccglbr
29.81921019
vioscreen_nccglgr
20.85914758
vioscreen_niacin
22.26399963
vioscreen_niacineq
34.89274401
vioscreen_nitrogen
11.51361703
vioscreen_non_fried_fish_servings
4.75712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.131287792
vioscreen_oxalic
475.01027400000004
vioscreen_oxalicm
529.4980308
vioscreen_pantothe
4.177753438
vioscreen_pectins
4.42158872
vioscreen_pfa182
25.31041042
vioscreen_pfa183
3.01123281
vioscreen_pfa184
0.095068495
vioscreen_pfa204
0.145808212
vioscreen_pfa205
0.297150682
vioscreen_pfa225
0.11638356
vioscreen_pfa226
0.611945207
vioscreen_pfatot
29.77347763
vioscreen_phenylal
2.849753518
vioscreen_phosphor
974.3767979
vioscreen_phytic
433.0987586
vioscreen_pinitol
0.0
vioscreen_potass
2793.721575
vioscreen_procdate
10/28/15
vioscreen_proline
3.00350693
vioscreen_protanim
47.20117723
vioscreen_protein
69.70013913
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.50271297
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
786.0
vioscreen_retinol
774.2138699
vioscreen_rgrain
0.0
vioscreen_ribofla
1.1512329940000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.71318
vioscreen_satoco
0.0
vioscreen_selenium
91.2250214
vioscreen_serine
2.9940550089999998
vioscreen_sfa100
0.682986367
vioscreen_sfa120
0.779287678
vioscreen_sfa140
2.673589001
vioscreen_sfa160
20.53394424
vioscreen_sfa170
0.18994521
vioscreen_sfa180
8.153752407999999
vioscreen_sfa200
0.506137001
vioscreen_sfa220
0.650684932
vioscreen_sfa40
0.8231780590000001
vioscreen_sfa60
0.509589041
vioscreen_sfa80
0.308876686
vioscreen_sfatot
36.13312018
vioscreen_sodium
2972.343493
vioscreen_sorbitol
0.146575342
vioscreen_srvid
14164.0
vioscreen_starch
5.33367134
vioscreen_started
10/13/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.72898785
vioscreen_sweet_servings
0.07671
vioscreen_tagatose
0.33978081299999996
vioscreen_tfa161t
0.041671232999999995
vioscreen_tfa181t
1.4797535519999998
vioscreen_tfa182t
0.37923287200000005
vioscreen_tgrain
0.0
vioscreen_thiamin
0.790794477
vioscreen_threonin
2.689945085
vioscreen_time
12.0
vioscreen_totaltfa
1.9056712530000002
vioscreen_totcla
0.219780804
vioscreen_totfolat
394.1239726
vioscreen_totsugar
27.09717733
vioscreen_tryptoph
0.758246602
vioscreen_tyrosine
2.298849362
vioscreen_user_id
14164.0
vioscreen_v_drkgr
1.640219158
vioscreen_v_orange
0.0
vioscreen_v_other
1.68550691
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.379041113
vioscreen_v_total
3.7047667619999998
vioscreen_valine
3.271232877
vioscreen_veg5_day
7.5
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.4
vioscreen_visit
1.0
vioscreen_vita_iu
22334.5274
vioscreen_vita_rae
1761.9368149999998
vioscreen_vita_re
2749.6558219999997
vioscreen_vitb12
7.859918798
vioscreen_vitb6
1.92520568
vioscreen_vitc
156.8042273
vioscreen_vitd
11.25252167
vioscreen_vitd2
0.0
vioscreen_vitd3
11.25252167
vioscreen_vitd_iu
450.10086689999997
vioscreen_vite_iu
29.57791631
vioscreen_vitk
943.9673801000001
vioscreen_water
2793.036986
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.036986301
vioscreen_zinc
8.203615957
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never