10317.000023015; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632608
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023015
acid_reflux
Not provided
acne medication
Not provided
acne_medication_otc
Not provided
add_adhd
I do not have this condition
age cat
70+
age years
77.0
age_corrected
77.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23015
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
Not provided
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1938.0
bmi
24.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Not provided
clinical condition
I do not have this condition
collection date
01/12/2015
collection month
January
collection season
Winter
collection time
07:20
collection_timestamp
2015-01-12 07:20
consume_animal_products_abx
Yes
contraceptive
Not provided
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not provided
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
4.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
6bb4361626d59a85257ddd6d66a1d2b17c2e443b753a28c2e26122eb83d2390bb02a66d3ed0a0cf1022660e877c98dc027245eb889e4a67b50bccd0a81908187
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
26.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023015
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
1b12c2bb4a898c34
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.796520578
vioscreen_a_cal
99.43846319
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.187013725
vioscreen_addsugar
18.52660263
vioscreen_adsugtot
17.22523411
vioscreen_age
215.0
vioscreen_alanine
2.64199988
vioscreen_alcohol
12.468739300000001
vioscreen_alcohol_servings
0.79652
vioscreen_alphacar
3797.046233
vioscreen_alphtoce
9.699587971
vioscreen_alphtoco
8.772083021
vioscreen_arginine
3.4389598269999997
vioscreen_ash
14.77884873
vioscreen_aspartam
34.61306721
vioscreen_aspartic
5.469890437999999
vioscreen_avcarb
124.442241
vioscreen_bcodeid
Not provided
vioscreen_betacar
12848.82603
vioscreen_betacryp
347.1878639
vioscreen_betaine
72.24487907
vioscreen_betatoco
0.326794517
vioscreen_biochana
0.008273972
vioscreen_bmi
Not provided
vioscreen_caffeine
243.4662671
vioscreen_calcium
true
vioscreen_calcium_avg
800.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.7628199999999999
vioscreen_calcium_servings
2.04668
vioscreen_calories
1243.783476
vioscreen_carbo
144.7654431
vioscreen_cholest
265.15023540000004
vioscreen_choline
369.19541949999996
vioscreen_clac9t11
0.0410411
vioscreen_clat10c12
0.010712328
vioscreen_copper
0.968849245
vioscreen_coumest
0.181013698
vioscreen_cystine
0.759753502
vioscreen_d_cheese
0.05378082
vioscreen_d_milk
0.63783561
vioscreen_d_tot_soym
0.762822065
vioscreen_d_total
0.762822065
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.214931498
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.13216444
vioscreen_discfat_oil
16.74726027
vioscreen_discfat_sol
13.81386184
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000136986
vioscreen_f_citmlb
1.5605478780000002
vioscreen_f_nj_citmlb
0.560465732
vioscreen_f_nj_other
0.14627396
vioscreen_f_nj_total
0.706739786
vioscreen_f_other
0.14627396
vioscreen_f_total
1.706821891
vioscreen_fat
45.62046768
vioscreen_fiber
20.318165399999998
vioscreen_fibh2o
7.672246896
vioscreen_fibinso
12.71802627
vioscreen_finished
1/10/15
vioscreen_fish_servings
1.58231
vioscreen_fol_deqv
555.1625
vioscreen_fol_nat
331.0151541
vioscreen_fol_syn
131.8638699
vioscreen_formontn
0.005726027
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.3
vioscreen_frtsumm
3.4
vioscreen_fructose
20.5855335
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.457424551
vioscreen_g_total
2.041369796
vioscreen_g_whl
0.583917822
vioscreen_galactos
0.174410979
vioscreen_gammtoco
7.868876417999999
vioscreen_gender
false
vioscreen_genistn
0.09926027300000001
vioscreen_glac
57.60005351
vioscreen_gltc
64.21323309
vioscreen_glucose
22.2615328
vioscreen_glutamic
9.931506849
vioscreen_glycine
2.377013658
vioscreen_glycitn
0.0
vioscreen_grams
1958.029452
vioscreen_hei2010_dairy
4.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.3
vioscreen_hei_score
79.5
vioscreen_hei_sodium
4.6
vioscreen_hei_sol_fat_alc_add_sug
17.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.407095797
vioscreen_inositol
0.464630169
vioscreen_iron
11.93531544
vioscreen_isoleuc
2.308383555
vioscreen_isomalt
0.0
vioscreen_joules
5203.990753
vioscreen_juice_servings
2.00022
vioscreen_lactitol
0.0
vioscreen_lactose
9.336603034
vioscreen_legumes
0.0
vioscreen_leucine
4.034192396
vioscreen_line_gi
348.6142765
vioscreen_low_fat_dairy_serving
0.07121
vioscreen_lutzeax
5072.748973
vioscreen_lycopene
3006.350342
vioscreen_lysine
3.481506515
vioscreen_m_egg
1.017862984
vioscreen_m_fish_hi
0.475726026
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.0
vioscreen_m_meat
1.175232853
vioscreen_m_mpf
2.35539718
vioscreen_m_nutsd
2.186712396
vioscreen_m_organ
0.0
vioscreen_m_poult
0.27852055800000003
vioscreen_m_soy
0.000136986
vioscreen_magnes
285.078125
vioscreen_maltitol
0.0
vioscreen_maltose
1.5460001069999998
vioscreen_mangan
2.656438624
vioscreen_mannitol
0.267534251
vioscreen_methhis3
9.439425032
vioscreen_methion
1.19504127
vioscreen_mfa141
0.060027397
vioscreen_mfa161
0.5343836120000001
vioscreen_mfa181
16.47791497
vioscreen_mfa201
0.27747942800000003
vioscreen_mfa221
0.067972607
vioscreen_mfatot
17.48821838
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.772083021
vioscreen_nccglbr
96.00508348
vioscreen_nccglgr
67.15766267
vioscreen_niacin
17.14060226
vioscreen_niacineq
26.68810199
vioscreen_nitrogen
8.952273518
vioscreen_non_fried_fish_servings
1.58231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.97583568
vioscreen_oxalic
262.4165882
vioscreen_oxalicm
292.1458904
vioscreen_pantothe
5.600931413
vioscreen_pectins
4.0152601269999995
vioscreen_pfa182
10.00693159
vioscreen_pfa183
0.727287648
vioscreen_pfa184
0.016410958
vioscreen_pfa204
0.111726045
vioscreen_pfa205
0.064356169
vioscreen_pfa225
0.025863012999999997
vioscreen_pfa226
0.142383575
vioscreen_pfatot
11.13967252
vioscreen_phenylal
2.409972476
vioscreen_phosphor
922.1809074999999
vioscreen_phytic
437.5113013999999
vioscreen_pinitol
0.0
vioscreen_potass
3090.3078769999997
vioscreen_procdate
10/28/15
vioscreen_proline
3.0374795989999996
vioscreen_protanim
31.871754600000003
vioscreen_protein
54.62190711
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.75139662
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
638.0
vioscreen_retinol
289.9648116
vioscreen_rgrain
1.6293151019999998
vioscreen_ribofla
1.90537009
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.70838
vioscreen_satoco
0.0
vioscreen_selenium
81.17778253
vioscreen_serine
2.678712275
vioscreen_sfa100
0.20049315199999998
vioscreen_sfa120
0.38032878700000006
vioscreen_sfa140
0.915287718
vioscreen_sfa160
7.371863629
vioscreen_sfa170
0.04789041
vioscreen_sfa180
2.979342693
vioscreen_sfa200
0.173835629
vioscreen_sfa220
0.347315059
vioscreen_sfa40
0.237972625
vioscreen_sfa60
0.129424652
vioscreen_sfa80
0.09605479800000001
vioscreen_sfatot
13.11350733
vioscreen_sodium
1850.254623
vioscreen_sorbitol
0.197424651
vioscreen_srvid
16827.0
vioscreen_starch
35.25147956
vioscreen_started
1/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.73427333
vioscreen_sweet_servings
0.37073
vioscreen_tagatose
0.836164417
vioscreen_tfa161t
0.013753425
vioscreen_tfa181t
0.694630119
vioscreen_tfa182t
0.106410959
vioscreen_tgrain
2.230739813
vioscreen_thiamin
1.311506799
vioscreen_threonin
2.145671353
vioscreen_time
18.0
vioscreen_totaltfa
0.82416432
vioscreen_totcla
0.052219187
vioscreen_totfolat
462.87906680000003
vioscreen_totsugar
79.55150364
vioscreen_tryptoph
0.5722739020000001
vioscreen_tyrosine
1.851863161
vioscreen_user_id
16827.0
vioscreen_v_drkgr
0.320602751
vioscreen_v_orange
0.860493198
vioscreen_v_other
0.761013752
vioscreen_v_potato
0.18673973600000002
vioscreen_v_starcy
0.136164386
vioscreen_v_tomato
0.381890409
vioscreen_v_total
2.6469313530000003
vioscreen_valine
2.685753224
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.3
vioscreen_visit
1.0
vioscreen_vita_iu
25836.13425
vioscreen_vita_rae
1533.376199
vioscreen_vita_re
2776.7895550000003
vioscreen_vitb12
3.639862813
vioscreen_vitb6
1.580109395
vioscreen_vitc
180.6634632
vioscreen_vitd
6.072959252
vioscreen_vitd2
0.0
vioscreen_vitd3
6.072959252
vioscreen_vitd_iu
242.91837009999998
vioscreen_vite_iu
13.05339523
vioscreen_vitk
146.09673590000003
vioscreen_water
1698.0212329999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.601424669
vioscreen_whole_grain_servings
0.58392
vioscreen_xylitol
0.034821915
vioscreen_zinc
8.554848031
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
77.0
weight_change
Not provided
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily