American Gut Project; 10317.000023010
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633050
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023010
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23010
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1980.0
bmi
28.63
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/10/2015
collection month
January
collection season
Winter
collection time
12:20
collection_timestamp
2015-01-10 12:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
160.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
3ac1bf64719fa525a060b7887f7dcb9fee4d06e046d6300019681664f0907ee1a449d37114859607a8a73b1228bbff50568f06341b406a91f4576edfbf75385d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
32.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-96.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000023010
sample type
Mouth
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
fb4754c4d6381954
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.9719999970000001
vioscreen_a_cal
107.8270976
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.69706898
vioscreen_addsugar
54.74499144
vioscreen_adsugtot
49.63317637
vioscreen_age
215.0
vioscreen_alanine
6.63380846
vioscreen_alcohol
14.20230094
vioscreen_alcohol_servings
0.972
vioscreen_alphacar
88.07484482
vioscreen_alphtoce
27.93074165
vioscreen_alphtoco
25.10873823
vioscreen_arginine
9.41545176
vioscreen_ash
29.93216235
vioscreen_aspartam
0.0
vioscreen_aspartic
13.740384200000001
vioscreen_avcarb
203.1559503
vioscreen_bcodeid
Not provided
vioscreen_betacar
4501.928425
vioscreen_betacryp
30.87027237
vioscreen_betaine
147.7535638
vioscreen_betatoco
1.1116438359999998
vioscreen_biochana
0.011945206000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
130.1466824
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.6593400000000003
vioscreen_calcium_servings
4.490469999999999
vioscreen_calories
2832.3207190000003
vioscreen_carbo
229.80744860000001
vioscreen_cholest
532.2086473
vioscreen_choline
662.7589897
vioscreen_clac9t11
0.11682192699999999
vioscreen_clat10c12
0.02884932
vioscreen_copper
2.432109676
vioscreen_coumest
0.12282191199999999
vioscreen_cystine
1.7287395319999999
vioscreen_d_cheese
1.2601644440000002
vioscreen_d_milk
1.1845479890000001
vioscreen_d_tot_soym
2.6593423919999997
vioscreen_d_total
2.6593423919999997
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
2.038082259
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.3781925569999998
vioscreen_discfat_oil
61.051814
vioscreen_discfat_sol
45.24115475
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.031780823
vioscreen_f_nj_citmlb
0.026575342000000002
vioscreen_f_nj_other
0.22972600199999998
vioscreen_f_nj_total
0.256301336
vioscreen_f_other
0.28257532
vioscreen_f_total
0.31435615899999997
vioscreen_fat
146.9729773
vioscreen_fiber
26.40131635
vioscreen_fibh2o
7.028520307000001
vioscreen_fibinso
19.43857556
vioscreen_finished
1/10/15
vioscreen_fish_servings
3.95019
vioscreen_fol_deqv
594.9942209
vioscreen_fol_nat
405.8280822
vioscreen_fol_syn
111.18937290000001
vioscreen_formontn
0.006684931999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.6
vioscreen_fructose
14.31761692
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
4.554109923
vioscreen_g_total
5.8734803079999995
vioscreen_g_whl
1.3193425429999999
vioscreen_galactos
0.469150616
vioscreen_gammtoco
20.45063008
vioscreen_gender
false
vioscreen_genistn
2.43043865
vioscreen_glac
86.8192423
vioscreen_gltc
94.43682577
vioscreen_glucose
16.95945259
vioscreen_glutamic
27.76945366
vioscreen_glycine
6.373124465
vioscreen_glycitn
0.36008213
vioscreen_grams
3025.2595890000002
vioscreen_hei2010_dairy
7.2
vioscreen_hei2010_empty_calories
18.9
vioscreen_hei2010_fatty_acids
8.7
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
3.6
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
4.7
vioscreen_hei2010_whole_fruit
1.1
vioscreen_hei2010_whole_grains
3.1
vioscreen_hei_drk_g_org_veg_leg
1.9
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.2
vioscreen_hei_non_juice_frt
1.1
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.2
vioscreen_hei_score
61.4
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
17.0
vioscreen_hei_veg
4.7
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
3.7766855739999996
vioscreen_inositol
0.070164385
vioscreen_iron
17.35484937
vioscreen_isoleuc
6.142109241
vioscreen_isomalt
0.0
vioscreen_joules
11850.42877
vioscreen_juice_servings
0.11619000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
19.17994703
vioscreen_legumes
0.101397245
vioscreen_leucine
10.89545096
vioscreen_line_gi
455.6401969
vioscreen_low_fat_dairy_serving
1.85405
vioscreen_lutzeax
4093.658904
vioscreen_lycopene
30539.150680000002
vioscreen_lysine
8.90997164
vioscreen_m_egg
1.534493224
vioscreen_m_fish_hi
0.736383558
vioscreen_m_fish_lo
1.5185479990000001
vioscreen_m_frank
1.3443287469999998
vioscreen_m_meat
1.6377807619999998
vioscreen_m_mpf
6.893260381
vioscreen_m_nutsd
8.81397287
vioscreen_m_organ
0.0
vioscreen_m_poult
1.656164384
vioscreen_m_soy
0.51800002
vioscreen_magnes
589.3404966
vioscreen_maltitol
0.0
vioscreen_maltose
3.803150752
vioscreen_mangan
5.065645066
vioscreen_mannitol
0.454082165
vioscreen_methhis3
23.24071062
vioscreen_methion
3.1107398460000004
vioscreen_mfa141
0.11643835599999999
vioscreen_mfa161
1.599589141
vioscreen_mfa181
57.71452269
vioscreen_mfa201
0.950849308
vioscreen_mfa221
0.112054788
vioscreen_mfatot
60.95343001
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
24.86394478
vioscreen_nccglbr
152.7401648
vioscreen_nccglgr
106.865625
vioscreen_niacin
39.40049765
vioscreen_niacineq
66.63318172
vioscreen_nitrogen
23.87665882
vioscreen_non_fried_fish_servings
3.95019
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.897725813
vioscreen_oxalic
463.2464041
vioscreen_oxalicm
575.2028253
vioscreen_pantothe
8.41761692
vioscreen_pectins
4.125041136
vioscreen_pfa182
32.01005993
vioscreen_pfa183
1.4085475969999999
vioscreen_pfa184
0.027506852000000002
vioscreen_pfa204
0.264136975
vioscreen_pfa205
0.134904093
vioscreen_pfa225
0.05473973
vioscreen_pfa226
0.273205483
vioscreen_pfatot
34.314434399999996
vioscreen_phenylal
6.466192209
vioscreen_phosphor
2326.0933219999997
vioscreen_phytic
1424.245034
vioscreen_pinitol
0.014109591000000001
vioscreen_potass
4301.703425
vioscreen_procdate
10/28/15
vioscreen_proline
8.77717653
vioscreen_protanim
86.47290240000001
vioscreen_protein
143.7331657
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
57.25684932
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
636.0
vioscreen_retinol
516.8890839
vioscreen_rgrain
3.7379180489999997
vioscreen_ribofla
2.691096225
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.49636
vioscreen_satoco
0.543945187
vioscreen_selenium
231.4457406
vioscreen_serine
7.0496983360000005
vioscreen_sfa100
0.50709588
vioscreen_sfa120
1.030136903
vioscreen_sfa140
2.7550411689999996
vioscreen_sfa160
22.55572828
vioscreen_sfa170
0.142027408
vioscreen_sfa180
9.760302734
vioscreen_sfa200
0.6901917759999999
vioscreen_sfa220
1.358767157
vioscreen_sfa40
0.591123273
vioscreen_sfa60
0.266904105
vioscreen_sfa80
0.26389041
vioscreen_sfatot
40.94436002
vioscreen_sodium
5500.913699000001
vioscreen_sorbitol
0.073808221
vioscreen_srvid
16832.0
vioscreen_starch
88.81244649
vioscreen_started
1/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.238904101
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.50265946
vioscreen_sweet_servings
1.25501
vioscreen_tagatose
3.8762742130000003
vioscreen_tfa161t
0.055041102
vioscreen_tfa181t
2.019041129
vioscreen_tfa182t
0.487451966
vioscreen_tgrain
6.253916952000001
vioscreen_thiamin
1.981972389
vioscreen_threonin
5.247287698
vioscreen_time
32.0
vioscreen_totaltfa
2.626109837
vioscreen_totcla
0.14663014900000002
vioscreen_totfolat
517.0173801
vioscreen_totsugar
99.22460402
vioscreen_tryptoph
1.633314995
vioscreen_tyrosine
5.110904391
vioscreen_user_id
16832.0
vioscreen_v_drkgr
0.305643829
vioscreen_v_orange
0.01460274
vioscreen_v_other
0.6480273520000001
vioscreen_v_potato
0.42893149999999997
vioscreen_v_starcy
0.005534247
vioscreen_v_tomato
1.3943287469999999
vioscreen_v_total
2.7961643169999997
vioscreen_valine
7.01495679
vioscreen_veg5_day
4.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
9324.195205
vioscreen_vita_rae
897.0066780999999
vioscreen_vita_re
1277.123116
vioscreen_vitb12
7.01356151
vioscreen_vitb6
2.956712529
vioscreen_vitc
104.8211473
vioscreen_vitd
10.14027384
vioscreen_vitd2
0.002136986
vioscreen_vitd3
10.13821904
vioscreen_vitd_iu
405.6109536
vioscreen_vite_iu
37.62531839
vioscreen_vitk
167.0028896
vioscreen_water
2489.667637
vioscreen_weight
Not provided
vioscreen_wgrain
2.5160545869999997
vioscreen_whole_grain_servings
1.31934
vioscreen_xylitol
0.014904108000000001
vioscreen_zinc
18.75690416
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
98.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)