American Gut Project; 10317.000027275
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633482
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:51Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027275
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27275
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
20.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/01/2015
collection month
June
collection season
Summer
collection time
09:35
collection_timestamp
2015-06-01 09:35
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Plains
elevation
277.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
361657df2f8455a2ba1788cfd827f030474a62cdccc071cec072919bc38fae7923019cebc4ea1cf45ea077628927dcefbc752aced1729fe03e8cc740cc816a7a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-93.3
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027275
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Not provided
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MN
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
6ce3e5e30dcd7629
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000438356
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.350520555
vioscreen_addsugar
6.942602873999999
vioscreen_adsugtot
6.470822185
vioscreen_age
215.0
vioscreen_alanine
1.310273973
vioscreen_alcohol
0.00309589
vioscreen_alcohol_servings
0.00044
vioscreen_alphacar
1031.7220029999999
vioscreen_alphtoce
10.56665574
vioscreen_alphtoco
9.979835322000001
vioscreen_arginine
1.898301216
vioscreen_ash
11.31380833
vioscreen_aspartam
0.0
vioscreen_aspartic
2.7092326960000004
vioscreen_avcarb
50.66810788
vioscreen_bcodeid
Not provided
vioscreen_betacar
19250.08219
vioscreen_betacryp
27.12841128
vioscreen_betaine
111.54023970000001
vioscreen_betatoco
0.214986305
vioscreen_biochana
0.005753424
vioscreen_bmi
Not provided
vioscreen_caffeine
106.8653896
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.0954
vioscreen_calcium_servings
1.6734200000000001
vioscreen_calories
605.4226884
vioscreen_carbo
69.67330908
vioscreen_cholest
131.7073844
vioscreen_choline
206.62322350000002
vioscreen_clac9t11
0.005123288
vioscreen_clat10c12
0.002082192
vioscreen_copper
1.053397066
vioscreen_coumest
0.000328767
vioscreen_cystine
0.358575314
vioscreen_d_cheese
0.051013696
vioscreen_d_milk
0.043945208
vioscreen_d_tot_soym
0.095397259
vioscreen_d_total
0.095397259
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.063972609
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.9032603640000001
vioscreen_discfat_oil
14.72857315
vioscreen_discfat_sol
4.826383575
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00169863
vioscreen_f_citmlb
0.420630134
vioscreen_f_nj_citmlb
0.41882186299999996
vioscreen_f_nj_other
0.273780823
vioscreen_f_nj_total
0.6926575540000001
vioscreen_f_other
0.273780823
vioscreen_f_total
0.6944932079999999
vioscreen_fat
29.226934399999998
vioscreen_fiber
19.00509284
vioscreen_fibh2o
3.1124662219999997
vioscreen_fibinso
15.94796929
vioscreen_finished
6/1/15
vioscreen_fish_servings
0.11596
vioscreen_fol_deqv
404.42196060000003
vioscreen_fol_nat
392.48026539999995
vioscreen_fol_syn
7.021123181
vioscreen_formontn
0.001232877
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.4
vioscreen_fructose
6.566000241
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.31205477800000003
vioscreen_g_total
1.00276715
vioscreen_g_whl
0.6907397129999999
vioscreen_galactos
0.095616453
vioscreen_gammtoco
4.914986221
vioscreen_gender
false
vioscreen_genistn
0.082958916
vioscreen_glac
18.28336901
vioscreen_gltc
21.479698199999998
vioscreen_glucose
6.633754281
vioscreen_glutamic
4.47391742
vioscreen_glycine
1.208986298
vioscreen_glycitn
0.017041096999999998
vioscreen_grams
2236.066096
vioscreen_hei2010_dairy
1.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.6
vioscreen_hei_score
76.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
0.588520625
vioscreen_inositol
0.07347944099999999
vioscreen_iron
8.19709573
vioscreen_isoleuc
1.096712379
vioscreen_isomalt
0.0
vioscreen_joules
2533.087329
vioscreen_juice_servings
0.00364
vioscreen_lactitol
0.0
vioscreen_lactose
0.603999935
vioscreen_legumes
0.08328767
vioscreen_leucine
1.778219145
vioscreen_line_gi
106.65098459999999
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
30197.24932
vioscreen_lycopene
959.0222603
vioscreen_lysine
1.4705205209999999
vioscreen_m_egg
0.584246575
vioscreen_m_fish_hi
0.016931506000000002
vioscreen_m_fish_lo
0.049150686
vioscreen_m_frank
0.0
vioscreen_m_meat
0.13695890900000002
vioscreen_m_mpf
0.33109590699999997
vioscreen_m_nutsd
1.095534233
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.002493151
vioscreen_magnes
271.0077483
vioscreen_maltitol
0.0
vioscreen_maltose
0.274493157
vioscreen_mangan
4.023041524
vioscreen_mannitol
0.12602739699999999
vioscreen_methhis3
1.049041079
vioscreen_methion
0.456191766
vioscreen_mfa141
0.015232876999999999
vioscreen_mfa161
0.344383595
vioscreen_mfa181
12.30503933
vioscreen_mfa201
0.153369862
vioscreen_mfa221
0.02734247
vioscreen_mfatot
12.88906785
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4
vioscreen_natoco
9.979835322000001
vioscreen_nccglbr
36.42848887
vioscreen_nccglgr
25.48150685
vioscreen_niacin
6.779534327
vioscreen_niacineq
12.40123207
vioscreen_nitrogen
4.395862987
vioscreen_non_fried_fish_servings
0.11596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.999479445
vioscreen_oxalic
944.7563356
vioscreen_oxalicm
991.5744007000001
vioscreen_pantothe
2.297150745
vioscreen_pectins
4.274219419
vioscreen_pfa182
6.489150123
vioscreen_pfa183
0.977643826
vioscreen_pfa184
0.00060274
vioscreen_pfa204
0.057671230999999996
vioscreen_pfa205
0.003863014
vioscreen_pfa225
0.0019178079999999998
vioscreen_pfa226
0.015671235
vioscreen_pfatot
7.57550701
vioscreen_phenylal
1.2200822390000001
vioscreen_phosphor
468.1029966
vioscreen_phytic
353.31309930000003
vioscreen_pinitol
0.002273973
vioscreen_potass
2131.1962329999997
vioscreen_procdate
10/28/15
vioscreen_proline
1.295643678
vioscreen_protanim
7.313889929
vioscreen_protein
26.76430062
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.45082138
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
416.0
vioscreen_retinol
194.8663955
vioscreen_rgrain
0.315671236
vioscreen_ribofla
0.913972703
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.58658
vioscreen_satoco
0.0
vioscreen_selenium
39.99000161
vioscreen_serine
1.3305479279999999
vioscreen_sfa100
0.033232877
vioscreen_sfa120
0.064301368
vioscreen_sfa140
0.197232871
vioscreen_sfa160
4.046027531
vioscreen_sfa170
0.023068496
vioscreen_sfa180
1.295452045
vioscreen_sfa200
0.11295891300000001
vioscreen_sfa220
0.189123305
vioscreen_sfa40
0.035095889
vioscreen_sfa60
0.020383563
vioscreen_sfa80
0.014493148999999999
vioscreen_sfatot
6.143068413
vioscreen_sodium
1979.734075
vioscreen_sorbitol
0.07515069099999999
vioscreen_srvid
18800.0
vioscreen_starch
21.29966824
vioscreen_started
6/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.950931079
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
0.239780813
vioscreen_tfa161t
0.006712328
vioscreen_tfa181t
0.264328776
vioscreen_tfa182t
0.066027398
vioscreen_tgrain
0.9975890279999999
vioscreen_thiamin
0.529698704
vioscreen_threonin
1.03153419
vioscreen_time
20.0
vioscreen_totaltfa
0.338876719
vioscreen_totcla
0.007342465
vioscreen_totfolat
399.50136989999993
vioscreen_totsugar
23.35252033
vioscreen_tryptoph
0.33838356700000005
vioscreen_tyrosine
0.92539723
vioscreen_user_id
18800.0
vioscreen_v_drkgr
2.2867945
vioscreen_v_orange
0.18764383
vioscreen_v_other
1.00109579
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.051068497000000004
vioscreen_v_tomato
0.068958899
vioscreen_v_total
3.5955890810000004
vioscreen_valine
1.2808218340000002
vioscreen_veg5_day
6.9
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.2
vioscreen_visit
1.0
vioscreen_vita_iu
33614.575339999996
vioscreen_vita_rae
1843.158904
vioscreen_vita_re
3491.4506850000002
vioscreen_vitb12
1.42586302
vioscreen_vitb6
0.9232053159999999
vioscreen_vitc
102.4670912
vioscreen_vitd
1.052383548
vioscreen_vitd2
0.0
vioscreen_vitd3
1.052383548
vioscreen_vitd_iu
42.09534193
vioscreen_vite_iu
14.88737024
vioscreen_vitk
1269.86875
vioscreen_water
2104.7183219999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.681917833
vioscreen_whole_grain_servings
0.6907399999999999
vioscreen_xylitol
0.027917812
vioscreen_zinc
4.139698938
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)