American Gut Project; 10317.000022898
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632569
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022898
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22898
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
24.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/10/2015
collection month
January
collection season
Winter
collection time
12:30
collection_timestamp
2015-01-10 12:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Far West
elevation
8.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
61602383ec37d574061da9baa26d403d4229a60d14fde0b43969bffbb30ca8f74e0df5940b097959347bfedb4e446a0759d76b0844064f7f6a5378cbb8e8b805
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022898
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
bf3de5e672b8be34
teethbrushing_frequency
Rarely (a few times/month)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.321095882
vioscreen_addsugar
1.974520581
vioscreen_adsugtot
1.792684978
vioscreen_age
215.0
vioscreen_alanine
6.425999973
vioscreen_alcohol
0.000027399999999999995
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
62.88451948
vioscreen_alphtoce
80.78420377
vioscreen_alphtoco
42.89416471
vioscreen_arginine
8.681151006
vioscreen_ash
17.37610766
vioscreen_aspartam
0.0
vioscreen_aspartic
13.13019183
vioscreen_avcarb
13.72890357
vioscreen_bcodeid
Not provided
vioscreen_betacar
8744.556164
vioscreen_betacryp
10.31939681
vioscreen_betaine
87.84196276
vioscreen_betatoco
0.068109585
vioscreen_biochana
0.000520548
vioscreen_bmi
Not provided
vioscreen_caffeine
236.7055865
vioscreen_calcium
true
vioscreen_calcium_avg
1071.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
5
vioscreen_calcium_from_dairy_servings
0.11785999999999999
vioscreen_calcium_servings
2.92784
vioscreen_calories
1224.705137
vioscreen_carbo
27.0043049
vioscreen_cholest
481.58013700000004
vioscreen_choline
530.2460616000001
vioscreen_clac9t11
0.024657534
vioscreen_clat10c12
0.0046575340000000005
vioscreen_copper
1.7162192980000002
vioscreen_coumest
0.17739726
vioscreen_cystine
1.612191647
vioscreen_d_cheese
0.067123288
vioscreen_d_milk
0.050739722
vioscreen_d_tot_soym
0.117863015
vioscreen_d_total
0.117863015
vioscreen_d_yogurt
0.0
vioscreen_daidzein
18.47649294
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.938684918
vioscreen_discfat_oil
45.62729024
vioscreen_discfat_sol
11.37561671
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.004136986
vioscreen_f_nj_citmlb
0.000684932
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.000684932
vioscreen_f_other
0.0
vioscreen_f_total
0.004136986
vioscreen_fat
72.17509632
vioscreen_fiber
13.27783471
vioscreen_fibh2o
4.9574793989999995
vioscreen_fibinso
8.371068333
vioscreen_finished
1/10/15
vioscreen_fish_servings
2.16462
vioscreen_fol_deqv
366.191524
vioscreen_fol_nat
360.456036
vioscreen_fol_syn
3.373534153
vioscreen_formontn
0.00005479999999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
2.8262190310000004
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.069643836
vioscreen_g_total
0.069643836
vioscreen_g_whl
0.0
vioscreen_galactos
0.025479453
vioscreen_gammtoco
4.522521137
vioscreen_gender
false
vioscreen_genistn
32.50051905
vioscreen_glac
0.6781369979999999
vioscreen_gltc
1.395917835
vioscreen_glucose
3.852574847
vioscreen_glutamic
21.74046848
vioscreen_glycine
5.743862372000001
vioscreen_glycitn
5.153534354
vioscreen_grams
2728.678082
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.2
vioscreen_hei_score
58.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.521150605
vioscreen_inositol
0.009917808
vioscreen_iron
16.94851777
vioscreen_isoleuc
6.317590165
vioscreen_isomalt
0.0
vioscreen_joules
5124.167122999999
vioscreen_juice_servings
0.0069299999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
0.563068505
vioscreen_legumes
0.0
vioscreen_leucine
9.744931908
vioscreen_line_gi
61.068247
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15415.60959
vioscreen_lycopene
1166.561473
vioscreen_lysine
9.478686189
vioscreen_m_egg
1.572191881
vioscreen_m_fish_hi
0.634794512
vioscreen_m_fish_lo
0.598712325
vioscreen_m_frank
0.304767138
vioscreen_m_meat
0.005726027
vioscreen_m_mpf
7.5270133239999995
vioscreen_m_nutsd
0.001205479
vioscreen_m_organ
0.0
vioscreen_m_poult
5.983013832
vioscreen_m_soy
0.000109589
vioscreen_magnes
422.3669092
vioscreen_maltitol
0.0
vioscreen_maltose
0.020849315
vioscreen_mangan
2.136630625
vioscreen_mannitol
0.079452055
vioscreen_methhis3
28.75950878
vioscreen_methion
2.759342225
vioscreen_mfa141
0.015808219
vioscreen_mfa161
1.338082259
vioscreen_mfa181
37.18444189
vioscreen_mfa201
0.376575334
vioscreen_mfa221
0.1100548
vioscreen_mfatot
39.14501819
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
12.29416471
vioscreen_nccglbr
9.532520199999999
vioscreen_nccglgr
6.668438972000001
vioscreen_niacin
29.63849262
vioscreen_niacineq
55.57158605
vioscreen_nitrogen
21.24334198
vioscreen_non_fried_fish_servings
2.16462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9413423719999998
vioscreen_oxalic
706.1318065
vioscreen_oxalicm
745.7912671
vioscreen_pantothe
10.47051985
vioscreen_pectins
2.287452175
vioscreen_pfa182
10.95394438
vioscreen_pfa183
1.4689588569999998
vioscreen_pfa184
0.023315069
vioscreen_pfa204
0.38915070799999996
vioscreen_pfa205
0.10213699300000001
vioscreen_pfa225
0.075260272
vioscreen_pfa226
0.273013703
vioscreen_pfatot
13.39219151
vioscreen_phenylal
5.820301797999999
vioscreen_phosphor
1382.021575
vioscreen_phytic
754.1095889999999
vioscreen_pinitol
0.006054795
vioscreen_potass
2950.358219
vioscreen_procdate
10/28/15
vioscreen_proline
6.031177761
vioscreen_protanim
71.97997646
vioscreen_protein
128.2025792
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
56.22358198
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
640.0
vioscreen_retinol
938.5909247000002
vioscreen_rgrain
0.053068495
vioscreen_ribofla
2.393890464
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.61192
vioscreen_satoco
68.0
vioscreen_selenium
103.3560895
vioscreen_serine
5.922850225
vioscreen_sfa100
0.038958902000000004
vioscreen_sfa120
0.07178082400000001
vioscreen_sfa140
0.33912328399999997
vioscreen_sfa160
10.1990134
vioscreen_sfa170
0.039808223999999996
vioscreen_sfa180
3.066822292
vioscreen_sfa200
0.200082188
vioscreen_sfa220
0.08841096
vioscreen_sfa40
0.042328767
vioscreen_sfa60
0.02279452
vioscreen_sfa80
0.017095891000000002
vioscreen_sfatot
14.26397287
vioscreen_sodium
2648.248801
vioscreen_sorbitol
0.002465754
vioscreen_srvid
16824.0
vioscreen_starch
2.022082352
vioscreen_started
1/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
2.177342412
vioscreen_sweet_servings
0.00549
vioscreen_tagatose
0.030657536000000003
vioscreen_tfa161t
0.021369862000000003
vioscreen_tfa181t
0.665452053
vioscreen_tfa182t
0.126876706
vioscreen_tgrain
0.053068495
vioscreen_thiamin
1.214301206
vioscreen_threonin
5.144766695
vioscreen_time
19.0
vioscreen_totaltfa
0.829315102
vioscreen_totcla
0.030109588
vioscreen_totfolat
363.8295805
vioscreen_totsugar
9.528110285
vioscreen_tryptoph
1.55663009
vioscreen_tyrosine
4.6110408419999995
vioscreen_user_id
16824.0
vioscreen_v_drkgr
1.309178015
vioscreen_v_orange
0.0
vioscreen_v_other
1.288356248
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.203479464
vioscreen_v_total
2.801013685
vioscreen_valine
6.324438142000001
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
17762.90274
vioscreen_vita_rae
1670.353938
vioscreen_vita_re
2402.118151
vioscreen_vitb12
2.6570957969999998
vioscreen_vitb6
2.523479472
vioscreen_vitc
94.52406892
vioscreen_vitd
8.321945901
vioscreen_vitd2
0.000273973
vioscreen_vitd3
8.321671661
vioscreen_vitd_iu
332.877836
vioscreen_vite_iu
86.32340004
vioscreen_vitk
596.5212329
vioscreen_water
2497.581507
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.019397261000000002
vioscreen_zinc
14.64808166
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
67.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never