American Gut Project; 10317.000027284
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633484
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:51Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027284
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27284
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
22.35
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-30
collection month
April
collection season
Spring
collection time
07:50
collection_timestamp
2015-04-30 07:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
141.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e46fdd81e12a8b43b7497565d181879471c95319d2a0b45e92bf6c9d6e8f1964ab021caab11ecfa314f44ca7a9799e8938bc678d0568f18c0d08b47e05a567f7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.6
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.7
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000027284
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
4ed80887723b5ad8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.078630139
vioscreen_a_cal
9.817452376
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.1453698559999999
vioscreen_addsugar
5.628629333999999
vioscreen_adsugtot
5.454219285
vioscreen_age
215.0
vioscreen_alanine
3.250300995
vioscreen_alcohol
1.229561667
vioscreen_alcohol_servings
0.07862999999999999
vioscreen_alphacar
1054.965325
vioscreen_alphtoce
9.68427333
vioscreen_alphtoco
9.075205346
vioscreen_arginine
3.7049042169999997
vioscreen_ash
21.49934049
vioscreen_aspartam
0.0
vioscreen_aspartic
5.815150765
vioscreen_avcarb
66.12799122
vioscreen_bcodeid
Not provided
vioscreen_betacar
8961.132192000001
vioscreen_betacryp
48.04103703
vioscreen_betaine
62.56096426
vioscreen_betatoco
0.153753422
vioscreen_biochana
0.004054795
vioscreen_bmi
Not provided
vioscreen_caffeine
769.213613
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.03482
vioscreen_calcium_servings
1.24359
vioscreen_calories
1190.98887
vioscreen_carbo
94.77026969
vioscreen_cholest
417.44897260000005
vioscreen_choline
469.88304789999995
vioscreen_clac9t11
0.120657526
vioscreen_clat10c12
0.032630139
vioscreen_copper
2.314630545
vioscreen_coumest
0.443534245
vioscreen_cystine
0.796712295
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.034821918
vioscreen_d_tot_soym
0.034821918
vioscreen_d_total
0.034821918
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.45769862299999997
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8603286529999999
vioscreen_discfat_oil
8.944465031
vioscreen_discfat_sol
27.60992348
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.37498628799999995
vioscreen_f_nj_citmlb
0.359315094
vioscreen_f_nj_other
0.984657601
vioscreen_f_nj_total
1.343972653
vioscreen_f_other
1.489917828
vioscreen_f_total
1.864904116
vioscreen_fat
70.24509846
vioscreen_fiber
28.64273866
vioscreen_fibh2o
12.31109536
vioscreen_fibinso
16.45252167
vioscreen_finished
4/25/15
vioscreen_fish_servings
2.87115
vioscreen_fol_deqv
516.5901113
vioscreen_fol_nat
511.0478596
vioscreen_fol_syn
3.253232689
vioscreen_formontn
0.000109589
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.7
vioscreen_frtsumm
3.7
vioscreen_fructose
17.6429032
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.334465758
vioscreen_g_total
0.334465758
vioscreen_g_whl
0.0
vioscreen_galactos
0.285178051
vioscreen_gammtoco
5.40975392
vioscreen_gender
false
vioscreen_genistn
0.155232876
vioscreen_glac
14.418247000000001
vioscreen_gltc
16.26082245
vioscreen_glucose
16.73197373
vioscreen_glutamic
8.995697774
vioscreen_glycine
2.8236986969999998
vioscreen_glycitn
0.0
vioscreen_grams
4420.848973
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
17.8
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
54.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.645424872
vioscreen_inositol
0.10104109900000001
vioscreen_iron
9.39736997
vioscreen_isoleuc
2.629397374
vioscreen_isomalt
0.0
vioscreen_joules
4983.100342
vioscreen_juice_servings
1.04189
vioscreen_lactitol
0.0
vioscreen_lactose
0.32632876899999996
vioscreen_legumes
0.0
vioscreen_leucine
4.39739706
vioscreen_line_gi
100.0830908
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
10645.98151
vioscreen_lycopene
706.411387
vioscreen_lysine
4.4166029
vioscreen_m_egg
1.025342466
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.87843837
vioscreen_m_frank
0.039589041
vioscreen_m_meat
2.244739606
vioscreen_m_mpf
5.090246748999999
vioscreen_m_nutsd
0.168164376
vioscreen_m_organ
0.586547935
vioscreen_m_poult
0.5832602720000001
vioscreen_m_soy
0.000821918
vioscreen_magnes
292.4517979
vioscreen_maltitol
0.0
vioscreen_maltose
0.279150683
vioscreen_mangan
4.362629762
vioscreen_mannitol
0.22561643399999998
vioscreen_methhis3
16.10038527
vioscreen_methion
1.3998903880000002
vioscreen_mfa141
0.096876714
vioscreen_mfa161
1.8501914659999998
vioscreen_mfa181
27.93529003
vioscreen_mfa201
0.29742463
vioscreen_mfa221
0.125397251
vioscreen_mfatot
30.37690497
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.075205346
vioscreen_nccglbr
46.11498288
vioscreen_nccglgr
32.25780447
vioscreen_niacin
18.186795
vioscreen_niacineq
28.88353221
vioscreen_nitrogen
9.669616198
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7806301169999998
vioscreen_oxalic
413.00766269999997
vioscreen_oxalicm
418.2139127
vioscreen_pantothe
9.652273518
vioscreen_pectins
5.933205801000001
vioscreen_pfa182
8.757371709
vioscreen_pfa183
1.353369726
vioscreen_pfa184
0.02961644
vioscreen_pfa204
0.205452049
vioscreen_pfa205
0.11172602400000001
vioscreen_pfa225
0.040876712999999995
vioscreen_pfa226
0.245945196
vioscreen_pfatot
10.91306855
vioscreen_phenylal
2.433369843
vioscreen_phosphor
868.6451198999999
vioscreen_phytic
375.8309932
vioscreen_pinitol
0.0
vioscreen_potass
3802.8517119999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.4709315469999997
vioscreen_protanim
44.47627087
vioscreen_protein
59.84830372
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.37301343
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
461.0
vioscreen_retinol
1323.910188
vioscreen_rgrain
0.196767122
vioscreen_ribofla
2.737452175
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.9366
vioscreen_satoco
0.0
vioscreen_selenium
76.6580747
vioscreen_serine
2.55452028
vioscreen_sfa100
0.46002740700000005
vioscreen_sfa120
0.48052050399999996
vioscreen_sfa140
1.728630338
vioscreen_sfa160
12.70635568
vioscreen_sfa170
0.128191783
vioscreen_sfa180
4.721068333
vioscreen_sfa200
0.08438356
vioscreen_sfa220
0.061643835999999994
vioscreen_sfa40
0.548821896
vioscreen_sfa60
0.341205482
vioscreen_sfa80
0.20460272
vioscreen_sfatot
21.54490315
vioscreen_sodium
2905.914384
vioscreen_sorbitol
0.7970683890000001
vioscreen_srvid
18593.0
vioscreen_starch
6.943973405
vioscreen_started
4/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.413369542000001
vioscreen_sweet_servings
0.00549
vioscreen_tagatose
0.024328767
vioscreen_tfa161t
0.029452057
vioscreen_tfa181t
1.63920564
vioscreen_tfa182t
0.20712328300000002
vioscreen_tgrain
0.196767122
vioscreen_thiamin
0.9599724759999999
vioscreen_threonin
2.384520481
vioscreen_time
23.0
vioscreen_totaltfa
1.8851507319999998
vioscreen_totcla
0.15260274199999999
vioscreen_totfolat
514.301113
vioscreen_totsugar
43.22254923
vioscreen_tryptoph
0.644520506
vioscreen_tyrosine
1.940904257
vioscreen_user_id
18593.0
vioscreen_v_drkgr
1.198383488
vioscreen_v_orange
0.236958898
vioscreen_v_other
2.186931453
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.13408218800000002
vioscreen_v_total
3.7563837760000003
vioscreen_valine
2.927178203
vioscreen_veg5_day
9.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.5
vioscreen_visit
1.0
vioscreen_vita_iu
20267.956159999998
vioscreen_vita_rae
2116.63339
vioscreen_vita_re
2909.351027
vioscreen_vitb12
10.7629321
vioscreen_vitb6
1.873479305
vioscreen_vitc
140.8232449
vioscreen_vitd
5.7081101510000005
vioscreen_vitd2
0.0
vioscreen_vitd3
5.7081101510000005
vioscreen_vitd_iu
228.324406
vioscreen_vite_iu
13.46334145
vioscreen_vitk
455.46031680000004
vioscreen_water
4190.462329
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.04520547900000001
vioscreen_zinc
9.274987291
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
66.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never