American Gut Project; 10317.000029453
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633720
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029453
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
28.0
age_corrected
28.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29453
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1987.0
bmi
20.76
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-26
collection month
June
collection season
Summer
collection time
09:45
collection_timestamp
2015-06-26 09:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
24.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
1d6aabec2a045ac220a7d58d3d0ce6905f1dcec63e1977738c66d14a533f74ca9cb06faccc550115fe4bb85d865cc9487051a4e43faa4f04bed462ad873954f2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
50.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-2.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029453
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
a75af86949cf1284
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.067506555
vioscreen_addsugar
51.00569349
vioscreen_adsugtot
43.44060627
vioscreen_age
215.0
vioscreen_alanine
3.27682169
vioscreen_alcohol
0.004109589
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
3719.771233
vioscreen_alphtoce
18.11000107
vioscreen_alphtoco
16.36731459
vioscreen_arginine
5.155259057
vioscreen_ash
29.94682417
vioscreen_aspartam
0.0
vioscreen_aspartic
8.411643836
vioscreen_avcarb
294.6815711
vioscreen_bcodeid
Not provided
vioscreen_betacar
23083.47671
vioscreen_betacryp
572.5936216
vioscreen_betaine
250.1917594
vioscreen_betatoco
0.6344657579999999
vioscreen_biochana
0.05512329
vioscreen_bmi
Not provided
vioscreen_caffeine
4.479205239
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.15003
vioscreen_calcium_servings
4.12288
vioscreen_calories
2055.626199
vioscreen_carbo
357.0762414
vioscreen_cholest
16.00698577
vioscreen_choline
352.7193065
vioscreen_clac9t11
0.007917809
vioscreen_clat10c12
0.003150685
vioscreen_copper
3.2415898569999997
vioscreen_coumest
0.235863025
vioscreen_cystine
1.0760000570000001
vioscreen_d_cheese
0.057369859
vioscreen_d_milk
0.054328767
vioscreen_d_tot_soym
1.7132603480000002
vioscreen_d_total
0.150027403
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
18.25180463
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.230959038
vioscreen_discfat_oil
18.53991733
vioscreen_discfat_sol
8.917890491
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004438357
vioscreen_f_citmlb
0.9315889540000001
vioscreen_f_nj_citmlb
0.929643772
vioscreen_f_nj_other
2.050739612
vioscreen_f_nj_total
2.9803560439999996
vioscreen_f_other
2.102054627
vioscreen_f_total
3.033643581
vioscreen_fat
46.72427226
vioscreen_fiber
62.11764234
vioscreen_fibh2o
14.26498555
vioscreen_fibinso
47.85307149
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
710.6774401
vioscreen_fol_nat
650.1817637
vioscreen_fol_syn
35.59416203
vioscreen_formontn
0.006684931999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.1
vioscreen_frtsumm
6.1
vioscreen_fructose
41.92841128
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
1.855315075
vioscreen_g_total
6.614548106
vioscreen_g_whl
4.759233198
vioscreen_galactos
0.429178024
vioscreen_gammtoco
11.10561724
vioscreen_gender
false
vioscreen_genistn
22.55789009
vioscreen_glac
135.96086259999998
vioscreen_gltc
159.02508559999998
vioscreen_glucose
45.10284675
vioscreen_glutamic
14.65887602
vioscreen_glycine
3.2130959710000004
vioscreen_glycitn
3.3620819510000004
vioscreen_grams
4854.19863
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.5
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
83.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.763260013
vioscreen_inositol
0.28561639699999997
vioscreen_iron
23.36802761
vioscreen_isoleuc
2.957150645
vioscreen_isomalt
0.0
vioscreen_joules
8600.730822
vioscreen_juice_servings
0.10655
vioscreen_lactitol
0.0
vioscreen_lactose
1.544082098
vioscreen_legumes
1.070164343
vioscreen_leucine
5.120740248
vioscreen_line_gi
806.7076199
vioscreen_low_fat_dairy_serving
0.044360000000000004
vioscreen_lutzeax
20986.82192
vioscreen_lycopene
10709.8137
vioscreen_lysine
3.837808687
vioscreen_m_egg
0.026547947000000002
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.155479452
vioscreen_m_mpf
0.155479452
vioscreen_m_nutsd
2.261260234
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
2.268493151
vioscreen_magnes
667.1879709
vioscreen_maltitol
0.0
vioscreen_maltose
8.71369863
vioscreen_mangan
8.801672865
vioscreen_mannitol
0.820054898
vioscreen_methhis3
1.1632055000000001
vioscreen_methion
1.0161371940000001
vioscreen_mfa141
0.00509589
vioscreen_mfa161
0.33756166200000004
vioscreen_mfa181
16.54460081
vioscreen_mfa201
0.239589054
vioscreen_mfa221
0.017068492
vioscreen_mfatot
17.38956416
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.08169815
vioscreen_nccglbr
228.89370719999997
vioscreen_nccglgr
160.09876930000001
vioscreen_niacin
22.73402718
vioscreen_niacineq
38.18285263
vioscreen_nitrogen
13.57216663
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.252849088
vioscreen_oxalic
873.0449486
vioscreen_oxalicm
872.1737158
vioscreen_pantothe
5.537206028
vioscreen_pectins
10.2719459
vioscreen_pfa182
12.49879602
vioscreen_pfa183
1.25002709
vioscreen_pfa184
0.000547945
vioscreen_pfa204
0.007972603
vioscreen_pfa205
0.001041096
vioscreen_pfa225
0.000410959
vioscreen_pfa226
0.000630137
vioscreen_pfatot
14.1705747
vioscreen_phenylal
3.4617531969999997
vioscreen_phosphor
1619.113185
vioscreen_phytic
1969.833048
vioscreen_pinitol
0.107506854
vioscreen_potass
5379.578767
vioscreen_procdate
10/28/15
vioscreen_proline
4.147452577
vioscreen_protanim
4.431616545
vioscreen_protein
81.68909996
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
77.25732021
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
366.0
vioscreen_retinol
268.71973460000004
vioscreen_rgrain
1.532465687
vioscreen_ribofla
1.9099724759999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.38786
vioscreen_satoco
0.634602753
vioscreen_selenium
99.52338399
vioscreen_serine
3.703698563
vioscreen_sfa100
0.058958905
vioscreen_sfa120
0.11350685
vioscreen_sfa140
0.360164318
vioscreen_sfa160
6.385836499
vioscreen_sfa170
0.017589041
vioscreen_sfa180
2.4258355959999998
vioscreen_sfa200
0.17904109199999999
vioscreen_sfa220
0.34964384299999995
vioscreen_sfa40
0.073013698
vioscreen_sfa60
0.026904109
vioscreen_sfa80
0.035808224
vioscreen_sfatot
10.24967158
vioscreen_sodium
4666.899315
vioscreen_sorbitol
3.3767397530000003
vioscreen_srvid
19967.0
vioscreen_starch
116.8451092
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.27873972
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.53893408
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.7727122690000001
vioscreen_tfa161t
0.011260273000000001
vioscreen_tfa181t
0.38243834600000004
vioscreen_tfa182t
0.167506848
vioscreen_tgrain
6.81734268
vioscreen_thiamin
1.9570136919999999
vioscreen_threonin
2.6864660810000003
vioscreen_time
23.0
vioscreen_totaltfa
0.692602748
vioscreen_totcla
0.011808218
vioscreen_totfolat
685.7759846
vioscreen_totsugar
143.3631207
vioscreen_tryptoph
0.927424768
vioscreen_tyrosine
2.237451674
vioscreen_user_id
19967.0
vioscreen_v_drkgr
1.64736997
vioscreen_v_orange
0.7683012659999999
vioscreen_v_other
2.53490425
vioscreen_v_potato
0.183178084
vioscreen_v_starcy
0.280904085
vioscreen_v_tomato
0.9441917940000001
vioscreen_v_total
6.358849262000001
vioscreen_valine
3.4653153089999997
vioscreen_veg5_day
10.5
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
12.4
vioscreen_visit
1.0
vioscreen_vita_iu
42942.86301
vioscreen_vita_rae
2371.1921230000003
vioscreen_vita_re
4473.665068
vioscreen_vitb12
2.227616318
vioscreen_vitb6
2.653288039
vioscreen_vitc
307.05222599999996
vioscreen_vitd
4.355041002
vioscreen_vitd2
4.030082138
vioscreen_vitd3
0.324958885
vioscreen_vitd_iu
174.2016401
vioscreen_vite_iu
24.61032748
vioscreen_vitk
906.0873287999999
vioscreen_water
4342.670204999999
vioscreen_weight
Not provided
vioscreen_wgrain
5.284958931
vioscreen_whole_grain_servings
4.7592300000000005
vioscreen_xylitol
0.097972609
vioscreen_zinc
14.82402745
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily