American Gut Project; 10317.000028232
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633944
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028232
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
68.0
age_corrected
68.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28232
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1947.0
bmi
24.99
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-23
collection month
August
collection season
Summer
collection time
10:30
collection_timestamp
2015-08-23 10:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
121.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f9535892b29b8cca6cfbaf47a056920b5287b75999ffc0eb38935d3ad69e66e0010299c5b96662eb51ca69ba4f3cad7b07910a760a724f23ba41b5befab15757
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past 3 months
last_travel
3 months
latitude
54.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028232
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
44f4ada22074d325
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.704520615
vioscreen_a_cal
210.5615582
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.60230228
vioscreen_addsugar
65.87534247
vioscreen_adsugtot
59.56386986
vioscreen_age
215.0
vioscreen_alanine
3.906548654
vioscreen_alcohol
26.38000054
vioscreen_alcohol_servings
1.70452
vioscreen_alphacar
2632.7710620000003
vioscreen_alphtoce
10.12934303
vioscreen_alphtoco
8.97909688
vioscreen_arginine
4.235041537
vioscreen_ash
27.828277500000002
vioscreen_aspartam
0.0
vioscreen_aspartic
8.138629736
vioscreen_avcarb
261.6270548
vioscreen_bcodeid
Not provided
vioscreen_betacar
7493.167808
vioscreen_betacryp
341.5100599
vioscreen_betaine
193.26997
vioscreen_betatoco
0.301890397
vioscreen_biochana
0.020246575
vioscreen_bmi
Not provided
vioscreen_caffeine
449.4644263999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.65674
vioscreen_calcium_servings
4.48616
vioscreen_calories
2396.041096
vioscreen_carbo
291.4626712
vioscreen_cholest
401.806464
vioscreen_choline
516.2200771
vioscreen_clac9t11
0.167780795
vioscreen_clat10c12
0.031643844
vioscreen_copper
1.59504127
vioscreen_coumest
0.346739719
vioscreen_cystine
1.058931617
vioscreen_d_cheese
0.630767112
vioscreen_d_milk
1.2706026259999998
vioscreen_d_tot_soym
2.656739786
vioscreen_d_total
2.656739786
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.427753396
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.465506609
vioscreen_discfat_oil
19.78999893
vioscreen_discfat_sol
50.81687714
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000383562
vioscreen_f_citmlb
1.3831506180000002
vioscreen_f_nj_citmlb
0.8764109990000001
vioscreen_f_nj_other
1.333424691
vioscreen_f_nj_total
2.20983569
vioscreen_f_other
1.333424691
vioscreen_f_total
2.716575643
vioscreen_fat
84.12013057
vioscreen_fiber
29.82466289
vioscreen_fibh2o
11.97230174
vioscreen_fibinso
17.87120746
vioscreen_finished
8/22/15
vioscreen_fish_servings
2.88327
vioscreen_fol_deqv
479.0482449
vioscreen_fol_nat
361.54456339999996
vioscreen_fol_syn
69.07032855
vioscreen_formontn
0.00430137
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
3.7
vioscreen_frtsumm
5.4
vioscreen_fructose
27.03096105
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.881095824
vioscreen_g_total
4.937726415
vioscreen_g_whl
2.056629923
vioscreen_galactos
1.242246529
vioscreen_gammtoco
10.06246455
vioscreen_gender
false
vioscreen_genistn
0.270328783
vioscreen_glac
125.20054579999999
vioscreen_gltc
137.5989191
vioscreen_glucose
30.23446597
vioscreen_glutamic
16.21830051
vioscreen_glycine
3.175287618
vioscreen_glycitn
0.033479453
vioscreen_grams
4289.122603
vioscreen_hei2010_dairy
8.5
vioscreen_hei2010_empty_calories
13.8
vioscreen_hei2010_fatty_acids
0.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
2.4
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.7
vioscreen_hei_drk_g_org_veg_leg
3.6
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.4
vioscreen_hei_meat_beans
8.8
vioscreen_hei_milk
8.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.9
vioscreen_hei_sat_fat
3.5
vioscreen_hei_score
64.1
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
8.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
2.293479773
vioscreen_inositol
0.388520541
vioscreen_iron
12.96043985
vioscreen_isoleuc
3.91879448
vioscreen_isomalt
0.0
vioscreen_joules
10025.03767
vioscreen_juice_servings
1.0135100000000001
vioscreen_lactitol
0.0
vioscreen_lactose
27.51383776
vioscreen_legumes
0.09452054800000001
vioscreen_leucine
6.777643407999999
vioscreen_line_gi
582.8270976
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
3860.3561640000003
vioscreen_lycopene
4934.607192
vioscreen_lysine
6.027698256
vioscreen_m_egg
1.092849355
vioscreen_m_fish_hi
0.775424654
vioscreen_m_fish_lo
0.879150725
vioscreen_m_frank
0.40583563
vioscreen_m_meat
1.13320555
vioscreen_m_mpf
3.62273986
vioscreen_m_nutsd
0.15720547199999998
vioscreen_m_organ
0.0
vioscreen_m_poult
0.429150683
vioscreen_m_soy
0.018082193
vioscreen_magnes
442.74507710000006
vioscreen_maltitol
0.0
vioscreen_maltose
3.8377528360000004
vioscreen_mangan
4.264684891
vioscreen_mannitol
0.310821909
vioscreen_methhis3
12.37474048
vioscreen_methion
2.012273919
vioscreen_mfa141
0.13668494
vioscreen_mfa161
1.3649591319999999
vioscreen_mfa181
26.80980843
vioscreen_mfa201
0.29947936199999997
vioscreen_mfa221
0.124164372
vioscreen_mfatot
29.01077162
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.97909688
vioscreen_nccglbr
204.4913741
vioscreen_nccglgr
143.0386023
vioscreen_niacin
22.85158658
vioscreen_niacineq
38.09769371
vioscreen_nitrogen
14.20079597
vioscreen_non_fried_fish_servings
2.4557700000000002
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.827780695
vioscreen_oxalic
233.8163313
vioscreen_oxalicm
223.28101459999996
vioscreen_pantothe
9.052054795
vioscreen_pectins
5.055314908
vioscreen_pfa182
11.41334413
vioscreen_pfa183
1.378958924
vioscreen_pfa184
0.030246578
vioscreen_pfa204
0.152246585
vioscreen_pfa205
0.120575338
vioscreen_pfa225
0.046164385
vioscreen_pfa226
0.252712344
vioscreen_pfatot
13.48260247
vioscreen_phenylal
3.8599719739999996
vioscreen_phosphor
1652.5357880000001
vioscreen_phytic
674.9903253
vioscreen_pinitol
0.012219178
vioscreen_potass
4696.584247
vioscreen_procdate
10/28/15
vioscreen_proline
5.845972682999999
vioscreen_protanim
59.6244649
vioscreen_protein
88.0528628
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.416269800000002
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
183.0
vioscreen_retinol
530.6619435
vioscreen_rgrain
3.0875073580000003
vioscreen_ribofla
3.046931855
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.79093
vioscreen_satoco
0.0
vioscreen_selenium
130.4740903
vioscreen_serine
4.184000094
vioscreen_sfa100
0.9588767690000001
vioscreen_sfa120
1.527671333
vioscreen_sfa140
3.6658353619999997
vioscreen_sfa160
17.14863014
vioscreen_sfa170
0.20536986100000001
vioscreen_sfa180
7.762657186
vioscreen_sfa200
0.142712329
vioscreen_sfa220
0.075506869
vioscreen_sfa40
1.135561674
vioscreen_sfa60
0.639041054
vioscreen_sfa80
0.47690408799999995
vioscreen_sfatot
34.16257491
vioscreen_sodium
3953.678082
vioscreen_sorbitol
0.645588956
vioscreen_srvid
20476.0
vioscreen_starch
87.88344927
vioscreen_started
8/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
59.3666845
vioscreen_sweet_servings
0.8727299999999999
vioscreen_tagatose
7.265068492999999
vioscreen_tfa161t
0.059068492
vioscreen_tfa181t
2.405863054
vioscreen_tfa182t
0.478931458
vioscreen_tgrain
4.873616759
vioscreen_thiamin
1.6945481390000001
vioscreen_threonin
3.3325476239999996
vioscreen_time
32.0
vioscreen_totaltfa
3.062082285
vioscreen_totcla
0.19983564399999998
vioscreen_totfolat
430.61472599999996
vioscreen_totsugar
151.1308647
vioscreen_tryptoph
0.9158904609999999
vioscreen_tyrosine
3.123342185
vioscreen_user_id
20476.0
vioscreen_v_drkgr
0.230602735
vioscreen_v_orange
0.46454798
vioscreen_v_other
0.716657414
vioscreen_v_potato
0.827945239
vioscreen_v_starcy
0.088191777
vioscreen_v_tomato
0.37386303200000004
vioscreen_v_total
2.7016989510000005
vioscreen_valine
4.717808219
vioscreen_veg5_day
3.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.4
vioscreen_visit
1.0
vioscreen_vita_iu
16735.573969999998
vioscreen_vita_rae
1279.023288
vioscreen_vita_re
2027.3811640000001
vioscreen_vitb12
6.287999652000001
vioscreen_vitb6
2.339972342
vioscreen_vitc
187.4435788
vioscreen_vitd
10.07753237
vioscreen_vitd2
0.001616438
vioscreen_vitd3
10.07594312
vioscreen_vitd_iu
403.10129489999997
vioscreen_vite_iu
13.33394291
vioscreen_vitk
148.0390518
vioscreen_water
3800.825342
vioscreen_weight
Not provided
vioscreen_wgrain
1.7860823119999998
vioscreen_whole_grain_servings
2.0566299999999997
vioscreen_xylitol
0.069178093
vioscreen_zinc
12.49964282
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
79.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily