American Gut Project; 10317.000029304
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634013
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029304
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29304
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Not provided
birth year
1966.0
bmi
22.65
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-20
collection month
July
collection season
Summer
collection time
13:00
collection_timestamp
2015-07-20 13:00
consume_animal_products_abx
Yes
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Not provided
drinks_per_session
Not provided
economic_region
Not provided
elevation
156.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
Not provided
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
40d3c28c9ed013365c9861b0b02249b8591524f4243eb4a716788d2c1dfca83bb0de8e0973f2881b43dd38f0a7c2086ad864d78e33b0e2ca2308eb64436b3fbd
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
53.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-2.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000029304
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
8505f9a507466a88
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.907835576
vioscreen_a_cal
111.9008134
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.89838399
vioscreen_addsugar
81.25723459
vioscreen_adsugtot
61.69693386
vioscreen_age
215.0
vioscreen_alanine
3.645808808
vioscreen_alcohol
14.05917835
vioscreen_alcohol_servings
0.90784
vioscreen_alphacar
3657.391438
vioscreen_alphtoce
20.76367188
vioscreen_alphtoco
18.31750856
vioscreen_arginine
4.9263006339999995
vioscreen_ash
20.19720543
vioscreen_aspartam
0.0
vioscreen_aspartic
7.718164731
vioscreen_avcarb
285.0096961
vioscreen_bcodeid
Not provided
vioscreen_betacar
9611.35137
vioscreen_betacryp
289.6268836
vioscreen_betaine
75.74299015
vioscreen_betatoco
0.8124931440000001
vioscreen_biochana
0.014520548000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
498.65766270000006
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.16904
vioscreen_calcium_servings
1.61156
vioscreen_calories
2632.359247
vioscreen_carbo
316.39186639999997
vioscreen_cholest
327.4743151
vioscreen_choline
461.8833904
vioscreen_clac9t11
0.117287675
vioscreen_clat10c12
0.029808219
vioscreen_copper
2.120082406
vioscreen_coumest
1.296794567
vioscreen_cystine
0.96476708
vioscreen_d_cheese
0.041397259
vioscreen_d_milk
0.12758904
vioscreen_d_tot_soym
1.464356138
vioscreen_d_total
0.169041108
vioscreen_d_yogurt
0.0
vioscreen_daidzein
10.49331523
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.0054520280000006
vioscreen_discfat_oil
57.09682149
vioscreen_discfat_sol
38.46910049
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002986301
vioscreen_f_citmlb
0.287808228
vioscreen_f_nj_citmlb
0.179534243
vioscreen_f_nj_other
2.180520755
vioscreen_f_nj_total
2.360082339
vioscreen_f_other
2.180520755
vioscreen_f_total
2.468356365
vioscreen_fat
117.0106057
vioscreen_fiber
31.34044039
vioscreen_fibh2o
8.186603034
vioscreen_fibinso
23.18726188
vioscreen_finished
7/22/15
vioscreen_fish_servings
1.33
vioscreen_fol_deqv
609.425
vioscreen_fol_nat
437.4067209
vioscreen_fol_syn
101.1841824
vioscreen_formontn
0.00260274
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.4274
vioscreen_frt5_day
3.1
vioscreen_frtsumm
4.9
vioscreen_fructose
33.54509311
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.817670765
vioscreen_g_total
3.9246575339999996
vioscreen_g_whl
0.10698631
vioscreen_galactos
0.257671262
vioscreen_gammtoco
20.72777986
vioscreen_gender
false
vioscreen_genistn
13.21260435
vioscreen_glac
136.15931080000001
vioscreen_gltc
148.8780287
vioscreen_glucose
36.1980549
vioscreen_glutamic
12.84317744
vioscreen_glycine
3.279945353
vioscreen_glycitn
1.317369853
vioscreen_grams
5017.607877
vioscreen_hei2010_dairy
4.3
vioscreen_hei2010_empty_calories
18.5
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
4.6
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.6
vioscreen_hei_score
74.2
vioscreen_hei_sodium
4.9
vioscreen_hei_sol_fat_alc_add_sug
16.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.9152056130000001
vioscreen_inositol
0.241671251
vioscreen_iron
14.88106807
vioscreen_isoleuc
3.081177761
vioscreen_isomalt
0.0
vioscreen_joules
11013.79178
vioscreen_juice_servings
0.21655
vioscreen_lactitol
0.0
vioscreen_lactose
1.890054614
vioscreen_legumes
0.154383557
vioscreen_leucine
5.388054835
vioscreen_line_gi
707.4856592
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3917.146918
vioscreen_lycopene
5036.546918
vioscreen_lysine
4.496191406
vioscreen_m_egg
1.037589044
vioscreen_m_fish_hi
0.305452049
vioscreen_m_fish_lo
0.452520543
vioscreen_m_frank
0.079150683
vioscreen_m_meat
1.596602766
vioscreen_m_mpf
3.1699452860000004
vioscreen_m_nutsd
2.24876709
vioscreen_m_organ
0.0
vioscreen_m_poult
0.736246605
vioscreen_m_soy
1.29769864
vioscreen_magnes
457.69606160000006
vioscreen_maltitol
0.0
vioscreen_maltose
12.75325878
vioscreen_mangan
8.871095087999999
vioscreen_mannitol
0.9227397759999999
vioscreen_methhis3
12.28131421
vioscreen_methion
1.468082125
vioscreen_mfa141
0.074191775
vioscreen_mfa161
1.171178029
vioscreen_mfa181
41.863811
vioscreen_mfa201
0.41493149799999995
vioscreen_mfa221
0.06279452599999999
vioscreen_mfatot
43.91383776
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
18.31750856
vioscreen_nccglbr
241.3909889
vioscreen_nccglgr
168.8571918
vioscreen_niacin
22.53668397
vioscreen_niacineq
35.70797571
vioscreen_nitrogen
12.21657481
vioscreen_non_fried_fish_servings
0.53596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.1474519080000003
vioscreen_oxalic
384.09238010000007
vioscreen_oxalicm
380.7989298
vioscreen_pantothe
5.497507758999999
vioscreen_pectins
6.168437634
vioscreen_pfa182
29.9643247
vioscreen_pfa183
1.912602506
vioscreen_pfa184
0.015232876999999999
vioscreen_pfa204
0.141698623
vioscreen_pfa205
0.059863015
vioscreen_pfa225
0.025150686000000002
vioscreen_pfa226
0.135232878
vioscreen_pfatot
32.78939694
vioscreen_phenylal
3.199206041
vioscreen_phosphor
1254.86036
vioscreen_phytic
1137.141267
vioscreen_pinitol
0.066246576
vioscreen_potass
4540.415753
vioscreen_procdate
10/28/15
vioscreen_proline
3.8098903710000003
vioscreen_protanim
33.97945206
vioscreen_protein
74.08095034
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
40.10232502
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
270.0
vioscreen_retinol
321.7915882
vioscreen_rgrain
2.421315149
vioscreen_ribofla
1.9058903109999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.47213999999999995
vioscreen_satoco
0.0
vioscreen_selenium
111.094146
vioscreen_serine
3.4447673639999996
vioscreen_sfa100
0.58986298
vioscreen_sfa120
1.486685139
vioscreen_sfa140
2.24068453
vioscreen_sfa160
17.23942503
vioscreen_sfa170
0.155041096
vioscreen_sfa180
7.850629415
vioscreen_sfa200
0.338410971
vioscreen_sfa220
0.408630162
vioscreen_sfa40
0.59175344
vioscreen_sfa60
0.35153424
vioscreen_sfa80
0.336054805
vioscreen_sfatot
31.85103542
vioscreen_sodium
3806.0171229999996
vioscreen_sorbitol
2.526438423
vioscreen_srvid
20207.0
vioscreen_starch
99.06256421
vioscreen_started
7/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
55.18771939
vioscreen_sweet_servings
2.42845
vioscreen_tagatose
1.628821804
vioscreen_tfa161t
0.033506848
vioscreen_tfa181t
2.16063015
vioscreen_tfa182t
0.47854798200000004
vioscreen_tgrain
3.917397528
vioscreen_thiamin
1.510273973
vioscreen_threonin
2.815369823
vioscreen_time
44.0
vioscreen_totaltfa
2.681616211
vioscreen_totcla
0.14761645199999998
vioscreen_totfolat
538.5906677999999
vioscreen_totsugar
139.8937072
vioscreen_tryptoph
0.7912603509999999
vioscreen_tyrosine
2.30495873
vioscreen_user_id
20207.0
vioscreen_v_drkgr
0.23035616899999997
vioscreen_v_orange
0.611726024
vioscreen_v_other
1.110356245
vioscreen_v_potato
1.155397264
vioscreen_v_starcy
0.541999963
vioscreen_v_tomato
0.450958921
vioscreen_v_total
4.100794628
vioscreen_valine
3.508766655
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
20379.546580000002
vioscreen_vita_rae
1287.1976029999998
vioscreen_vita_re
2252.603596
vioscreen_vitb12
3.11136993
vioscreen_vitb6
2.563944945
vioscreen_vitc
163.8290668
vioscreen_vitd
4.428329342
vioscreen_vitd2
1.143205533
vioscreen_vitd3
3.285123475
vioscreen_vitd_iu
177.1331737
vioscreen_vite_iu
27.32411173
vioscreen_vitk
147.3465967
vioscreen_water
4518.396918
vioscreen_weight
Not provided
vioscreen_wgrain
1.496082212
vioscreen_whole_grain_servings
0.10699000000000002
vioscreen_xylitol
0.062054799
vioscreen_zinc
11.20602726
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily