American Gut Project; 10317.000030129
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634131
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030129
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030129
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
31.21
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-08-30
collection month
August
collection season
Summer
collection time
12:45
collection_timestamp
2015-08-30 12:45
consume_animal_products_abx
Yes
contraceptive
Not provided
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
182.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
179.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b43fac10b23d685c970801ae04d56c53f781ecf7b1c50b1dcd5267412efaf1e3b0bf0a1c07bb0eeeebc50742d1fc565eb61844657991a09e50493e56e4358daf
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
6 months
latitude
53.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
Not provided
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030129
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
Self-diagnosed
skin_condition
Self-diagnosed
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f363686d2e6fa546
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
6.851999946
vioscreen_a_cal
877.242637
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.324164404
vioscreen_addsugar
7.582136932999999
vioscreen_adsugtot
6.980657374
vioscreen_age
215.0
vioscreen_alanine
4.201698617
vioscreen_alcohol
104.0757277
vioscreen_alcohol_servings
6.852
vioscreen_alphacar
124.22997649999999
vioscreen_alphtoce
9.933944911000001
vioscreen_alphtoco
8.93348071
vioscreen_arginine
4.4209315469999995
vioscreen_ash
18.14794387
vioscreen_aspartam
0.0
vioscreen_aspartic
7.445342599999999
vioscreen_avcarb
84.53622646
vioscreen_bcodeid
Not provided
vioscreen_betacar
3635.182877
vioscreen_betacryp
219.8589469
vioscreen_betaine
102.4790026
vioscreen_betatoco
0.145534244
vioscreen_biochana
0.010767123
vioscreen_bmi
Not provided
vioscreen_caffeine
178.4197774
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9673700000000001
vioscreen_calcium_servings
2.28268
vioscreen_calories
2250.343836
vioscreen_carbo
94.44183433
vioscreen_cholest
510.032363
vioscreen_choline
563.7339469
vioscreen_clac9t11
0.10517808099999999
vioscreen_clat10c12
0.025643837000000003
vioscreen_copper
0.926164434
vioscreen_coumest
0.051424659000000005
vioscreen_cystine
0.962712285
vioscreen_d_cheese
0.7924109890000001
vioscreen_d_milk
0.17142465699999998
vioscreen_d_tot_soym
0.967369853
vioscreen_d_total
0.967369853
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.039369863
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.999342493
vioscreen_discfat_oil
30.15553296
vioscreen_discfat_sol
39.663920700000006
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.01460274
vioscreen_f_nj_citmlb
0.000876712
vioscreen_f_nj_other
0.230109583
vioscreen_f_nj_total
0.230986295
vioscreen_f_other
0.230109583
vioscreen_f_total
0.244712328
vioscreen_fat
92.63251284
vioscreen_fiber
9.90660183
vioscreen_fibh2o
2.65772588
vioscreen_fibinso
7.191506582000001
vioscreen_finished
8/30/15
vioscreen_fish_servings
4.5944199999999995
vioscreen_fol_deqv
353.30299660000003
vioscreen_fol_nat
278.027226
vioscreen_fol_syn
44.25224743
vioscreen_formontn
0.000739726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.5
vioscreen_fructose
3.7206027930000003
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.9684931509999999
vioscreen_g_total
0.99646573
vioscreen_g_whl
0.027972603
vioscreen_galactos
0.14873971800000002
vioscreen_gammtoco
9.235315443
vioscreen_gender
false
vioscreen_genistn
0.08523287800000001
vioscreen_glac
25.28386398
vioscreen_gltc
26.5714817
vioscreen_glucose
4.677205627
vioscreen_glutamic
13.55668745
vioscreen_glycine
3.535205747
vioscreen_glycitn
0.001945205
vioscreen_grams
4296.736986
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
2.1
vioscreen_hei2010_fatty_acids
5.3
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
48.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
1.3
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
2.6
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
0.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
1.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.5
vioscreen_hei_score
43.8
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.2857258
vioscreen_inositol
0.373808226
vioscreen_iron
10.75643996
vioscreen_isoleuc
3.71706844
vioscreen_isomalt
0.0
vioscreen_joules
9415.437671
vioscreen_juice_servings
0.02745
vioscreen_lactitol
0.0
vioscreen_lactose
3.008109482
vioscreen_legumes
0.04890411099999999
vioscreen_leucine
6.223150551
vioscreen_line_gi
143.9936965
vioscreen_low_fat_dairy_serving
0.07805
vioscreen_lutzeax
4564.039384000001
vioscreen_lycopene
3584.9739729999997
vioscreen_lysine
6.184767632000001
vioscreen_m_egg
1.611424611
vioscreen_m_fish_hi
2.032739759
vioscreen_m_fish_lo
0.585506868
vioscreen_m_frank
0.43534244899999996
vioscreen_m_meat
1.886876605
vioscreen_m_mpf
6.044794788
vioscreen_m_nutsd
0.030958905
vioscreen_m_organ
0.0
vioscreen_m_poult
1.104383578
vioscreen_m_soy
0.002493151
vioscreen_magnes
318.9262414
vioscreen_maltitol
0.0
vioscreen_maltose
0.8630410390000001
vioscreen_mangan
4.031780755
vioscreen_mannitol
0.13610959
vioscreen_methhis3
22.45509685
vioscreen_methion
2.0276711659999997
vioscreen_mfa141
0.145205479
vioscreen_mfa161
1.8952056469999998
vioscreen_mfa181
32.47739726
vioscreen_mfa201
0.648767173
vioscreen_mfa221
0.361917783
vioscreen_mfatot
35.78205265
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
8.93348071
vioscreen_nccglbr
46.98276434
vioscreen_nccglgr
32.87427494
vioscreen_niacin
21.25635836
vioscreen_niacineq
35.62281946
vioscreen_nitrogen
12.87832834
vioscreen_non_fried_fish_servings
4.5944199999999995
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.203780835
vioscreen_oxalic
300.76489730000003
vioscreen_oxalicm
285.61091610000005
vioscreen_pantothe
4.866519625
vioscreen_pectins
2.023534153
vioscreen_pfa182
15.43131555
vioscreen_pfa183
2.170082239
vioscreen_pfa184
0.083123288
vioscreen_pfa204
0.279178065
vioscreen_pfa205
0.26405480800000003
vioscreen_pfa225
0.10986303
vioscreen_pfa226
0.577205459
vioscreen_pfatot
19.11156357
vioscreen_phenylal
3.390219325
vioscreen_phosphor
1321.746062
vioscreen_phytic
252.2327911
vioscreen_pinitol
0.000657534
vioscreen_potass
3220.69589
vioscreen_procdate
10/28/15
vioscreen_proline
4.2944657
vioscreen_protanim
68.49709974
vioscreen_protein
80.35956229
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.86501365
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
156.0
vioscreen_retinol
384.7495719
vioscreen_rgrain
1.217671266
vioscreen_ribofla
1.722191714
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.66784
vioscreen_satoco
0.0
vioscreen_selenium
111.8968108
vioscreen_serine
3.707753639
vioscreen_sfa100
0.49342463200000003
vioscreen_sfa120
0.525178047
vioscreen_sfa140
2.486986469
vioscreen_sfa160
16.63756288
vioscreen_sfa170
0.17030136899999998
vioscreen_sfa180
6.897451573
vioscreen_sfa200
0.174273985
vioscreen_sfa220
0.10471234300000001
vioscreen_sfa40
0.58400001
vioscreen_sfa60
0.325041073
vioscreen_sfa80
0.21131506100000003
vioscreen_sfatot
28.97274187
vioscreen_sodium
3091.745205
vioscreen_sorbitol
0.12156165099999999
vioscreen_srvid
20542.0
vioscreen_starch
21.28035638
vioscreen_started
8/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.2254795860000005
vioscreen_sweet_servings
0.14247
vioscreen_tagatose
0.79443836
vioscreen_tfa161t
0.09495890400000001
vioscreen_tfa181t
1.547561604
vioscreen_tfa182t
0.38372602100000003
vioscreen_tgrain
1.2533972340000001
vioscreen_thiamin
0.8462740129999999
vioscreen_threonin
3.265671487
vioscreen_time
20.0
vioscreen_totaltfa
2.032246462
vioscreen_totcla
0.130438358
vioscreen_totfolat
322.2794307
vioscreen_totsugar
19.40161735
vioscreen_tryptoph
0.861917741
vioscreen_tyrosine
2.752054795
vioscreen_user_id
20542.0
vioscreen_v_drkgr
0.426657523
vioscreen_v_orange
0.000684932
vioscreen_v_other
1.058931534
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0035342459999999996
vioscreen_v_tomato
0.49635615899999996
vioscreen_v_total
1.986164417
vioscreen_valine
4.1227940389999995
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.0
vioscreen_visit
1.0
vioscreen_vita_iu
7629.617808
vioscreen_vita_rae
702.0187927999999
vioscreen_vita_re
1019.288185
vioscreen_vitb12
5.835506742000001
vioscreen_vitb6
2.244219385
vioscreen_vitc
118.3991545
vioscreen_vitd
13.49052066
vioscreen_vitd2
0.0016712329999999998
vioscreen_vitd3
13.48887655
vioscreen_vitd_iu
539.6208262
vioscreen_vite_iu
13.33298507
vioscreen_vitk
221.85053509999997
vioscreen_water
3922.059589
vioscreen_weight
Not provided
vioscreen_wgrain
0.035726027
vioscreen_whole_grain_servings
0.02797
vioscreen_xylitol
0.08936987099999999
vioscreen_zinc
9.381506848999999
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
100.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)