American Gut Project; 10317.000029153
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633278
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029153
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29153
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
26.22
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-24
collection month
June
collection season
Summer
collection time
22:50
collection_timestamp
2015-06-24 22:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
66.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
9fb3cad7e8cc86ad38bdae240f3ce4ce89db3d476b6386946efaebed9d3ac5abd276044892fcedfa7e922f17ca7aa875950e22cde615f8b78afa75e3904e3e6c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-73.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029153
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
630978358a88a5a4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.20410959
vioscreen_addsugar
66.17070848
vioscreen_adsugtot
62.01405179999999
vioscreen_age
215.0
vioscreen_alanine
3.8326031410000003
vioscreen_alcohol
0.004273972
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
91.89074272
vioscreen_alphtoce
9.739616999999999
vioscreen_alphtoco
8.390247752999999
vioscreen_arginine
4.392685146
vioscreen_ash
18.27479265
vioscreen_aspartam
34.61306721
vioscreen_aspartic
7.570244943
vioscreen_avcarb
240.625792
vioscreen_bcodeid
Not provided
vioscreen_betacar
1004.199229
vioscreen_betacryp
236.3223031
vioscreen_betaine
288.1124358
vioscreen_betatoco
0.495780924
vioscreen_biochana
0.003863014
vioscreen_bmi
Not provided
vioscreen_caffeine
9.512603007000001
vioscreen_calcium
true
vioscreen_calcium_avg
571.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
1.7396200000000002
vioscreen_calcium_servings
3.3785199999999995
vioscreen_calories
1919.37363
vioscreen_carbo
269.8005137
vioscreen_cholest
170.8453125
vioscreen_choline
268.33013700000004
vioscreen_clac9t11
0.082493158
vioscreen_clat10c12
0.015287671999999999
vioscreen_copper
1.464082399
vioscreen_coumest
0.007369863000000001
vioscreen_cystine
1.028575239
vioscreen_d_cheese
0.9915890209999999
vioscreen_d_milk
0.160602737
vioscreen_d_tot_soym
1.739616499
vioscreen_d_total
1.739616499
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.029205479
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.425013712
vioscreen_discfat_oil
15.30430089
vioscreen_discfat_sol
33.37753371
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00090411
vioscreen_f_citmlb
1.50246582
vioscreen_f_nj_citmlb
1.436767076
vioscreen_f_nj_other
2.264684891
vioscreen_f_nj_total
3.70142538
vioscreen_f_other
2.264684891
vioscreen_f_total
3.767123957
vioscreen_fat
59.86844499
vioscreen_fiber
28.82159407
vioscreen_fibh2o
8.33315229
vioscreen_fibinso
20.51224449
vioscreen_finished
6/20/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
363.30136989999994
vioscreen_fol_nat
234.36168659999998
vioscreen_fol_syn
75.85994221
vioscreen_formontn
0.004027397
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
5.1
vioscreen_frtsumm
7.5
vioscreen_fructose
31.6658658
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
4.798192022
vioscreen_g_total
7.9278086210000005
vioscreen_g_whl
3.129644023
vioscreen_galactos
0.90583563
vioscreen_gammtoco
7.390437714
vioscreen_gender
false
vioscreen_genistn
0.04010959
vioscreen_glac
127.00191570000001
vioscreen_gltc
141.85359590000002
vioscreen_glucose
27.37572506
vioscreen_glutamic
16.09375134
vioscreen_glycine
3.509780675
vioscreen_glycitn
0.0070136980000000005
vioscreen_grams
2474.661473
vioscreen_hei2010_dairy
7.0
vioscreen_hei2010_empty_calories
14.1
vioscreen_hei2010_fatty_acids
1.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
0.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.2
vioscreen_hei2010_score
65.9
vioscreen_hei2010_sea_foods_plant_protiens
4.1
vioscreen_hei2010_sodium
5.4
vioscreen_hei2010_veg
1.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
0.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.6
vioscreen_hei_sat_fat
6.8
vioscreen_hei_score
71.2
vioscreen_hei_sodium
4.3
vioscreen_hei_sol_fat_alc_add_sug
14.6
vioscreen_hei_veg
1.9
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.270219191
vioscreen_inositol
0.19339725
vioscreen_iron
11.95687875
vioscreen_isoleuc
3.701780554
vioscreen_isomalt
0.0
vioscreen_joules
8030.656848999999
vioscreen_juice_servings
0.13142
vioscreen_lactitol
0.0
vioscreen_lactose
11.97830158
vioscreen_legumes
0.0
vioscreen_leucine
6.330821918
vioscreen_line_gi
658.9490154
vioscreen_low_fat_dairy_serving
0.7481899999999999
vioscreen_lutzeax
796.0017978999999
vioscreen_lycopene
3250.433904
vioscreen_lysine
5.544904484
vioscreen_m_egg
0.012109588999999999
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
1.141205503
vioscreen_m_meat
1.6083288740000001
vioscreen_m_mpf
4.607342278
vioscreen_m_nutsd
1.247178002
vioscreen_m_organ
0.0
vioscreen_m_poult
1.8578081519999998
vioscreen_m_soy
0.000136986
vioscreen_magnes
343.00699910000003
vioscreen_maltitol
0.0
vioscreen_maltose
5.433178042000001
vioscreen_mangan
4.703891535
vioscreen_mannitol
0.7126027559999999
vioscreen_methhis3
18.3374786
vioscreen_methion
1.884465633
vioscreen_mfa141
0.106027389
vioscreen_mfa161
0.908630204
vioscreen_mfa181
17.84238415
vioscreen_mfa201
0.22087672
vioscreen_mfa221
0.009698631
vioscreen_mfatot
19.40613897
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4
vioscreen_natoco
8.063863843
vioscreen_nccglbr
190.8781892
vioscreen_nccglgr
133.5491759
vioscreen_niacin
25.10200664
vioscreen_niacineq
39.75775899
vioscreen_nitrogen
14.36731459
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.958383471
vioscreen_oxalic
162.5746682
vioscreen_oxalicm
149.4602633
vioscreen_pantothe
4.729835991
vioscreen_pectins
4.087644143
vioscreen_pfa182
10.34745224
vioscreen_pfa183
0.8936986640000001
vioscreen_pfa184
0.001506849
vioscreen_pfa204
0.12367123099999999
vioscreen_pfa205
0.008520548000000001
vioscreen_pfa225
0.026849316
vioscreen_pfa226
0.028767123
vioscreen_pfatot
11.49490315
vioscreen_phenylal
3.612739458
vioscreen_phosphor
1378.1826199999998
vioscreen_phytic
970.6234589
vioscreen_pinitol
0.003534247
vioscreen_potass
2607.198973
vioscreen_procdate
10/28/15
vioscreen_proline
5.744876391
vioscreen_protanim
55.26772795
vioscreen_protein
87.86453874
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.58671072
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
380.0
vioscreen_retinol
210.029238
vioscreen_rgrain
4.083205466
vioscreen_ribofla
1.631041143
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.682
vioscreen_satoco
0.7252602770000001
vioscreen_selenium
127.6111301
vioscreen_serine
3.735260929
vioscreen_sfa100
0.550356136
vioscreen_sfa120
0.979205573
vioscreen_sfa140
2.3968495830000003
vioscreen_sfa160
11.42424684
vioscreen_sfa170
0.103999997
vioscreen_sfa180
5.396082045
vioscreen_sfa200
0.142931502
vioscreen_sfa220
0.192438329
vioscreen_sfa40
0.599205456
vioscreen_sfa60
0.301150701
vioscreen_sfa80
0.285452041
vioscreen_sfatot
22.87646351
vioscreen_sodium
2900.806849
vioscreen_sorbitol
2.077781029
vioscreen_srvid
19937.0
vioscreen_starch
93.66388057
vioscreen_started
6/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.31854793600000003
vioscreen_sucrlose
0.0
vioscreen_sucrose
54.69967359
vioscreen_sweet_servings
0.53699
vioscreen_tagatose
6.711314747
vioscreen_tfa161t
0.057506849000000006
vioscreen_tfa181t
1.412986275
vioscreen_tfa182t
0.414602745
vioscreen_tgrain
8.321369997
vioscreen_thiamin
1.6025206680000001
vioscreen_threonin
3.044356004
vioscreen_time
40.0
vioscreen_totaltfa
2.022958917
vioscreen_totcla
0.099178084
vioscreen_totfolat
310.2216182
vioscreen_totsugar
134.7644585
vioscreen_tryptoph
0.8791779820000001
vioscreen_tyrosine
2.873424122
vioscreen_user_id
19937.0
vioscreen_v_drkgr
0.0
vioscreen_v_orange
0.000328767
vioscreen_v_other
0.045890411
vioscreen_v_potato
0.381424661
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.39126026700000005
vioscreen_v_total
0.818904093
vioscreen_valine
4.27479432
vioscreen_veg5_day
0.6
vioscreen_vegetable_servings
0.0
vioscreen_vegsumm
1.6
vioscreen_visit
1.0
vioscreen_vita_iu
2647.077055
vioscreen_vita_rae
307.38839900000005
vioscreen_vita_re
404.74734589999997
vioscreen_vitb12
3.2041099230000003
vioscreen_vitb6
1.65860278
vioscreen_vitc
144.51730519999998
vioscreen_vitd
2.278739866
vioscreen_vitd2
0.000630137
vioscreen_vitd3
2.278137207
vioscreen_vitd_iu
91.14959466
vioscreen_vite_iu
12.75038527
vioscreen_vitk
51.89978596
vioscreen_water
2053.807705
vioscreen_weight
Not provided
vioscreen_wgrain
4.2383835880000005
vioscreen_whole_grain_servings
3.12964
vioscreen_xylitol
0.06230137400000001
vioscreen_zinc
11.964930699999998
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)