American Gut Project; 10317.000022666
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632560
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022666
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22666
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1961.0
bmi
21.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-17
collection month
January
collection season
Winter
collection time
11:00
collection_timestamp
2015-01-17 11:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
314.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
b5daa6ab7b1eeef2ab1a3da8f6e0a4ef4da59f7b8d5a9d12e8707d2985332df89703344b5580b3f2c9f276c162cd3a776f5bd564e7397e084c4af3c8fb84f369
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-82.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022666
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OH
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
0ed0a18095db5477
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.458986382
vioscreen_a_cal
308.3394478
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.25506876
vioscreen_addsugar
61.19233198
vioscreen_adsugtot
53.73882170000001
vioscreen_age
215.0
vioscreen_alanine
4.1600004010000005
vioscreen_alcohol
38.3277531
vioscreen_alcohol_servings
2.45899
vioscreen_alphacar
2186.139555
vioscreen_alphtoce
22.04191727
vioscreen_alphtoco
19.51013752
vioscreen_arginine
5.405424603999999
vioscreen_ash
38.58908123
vioscreen_aspartam
0.0
vioscreen_aspartic
9.236494676
vioscreen_avcarb
367.07144689999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
14547.03699
vioscreen_betacryp
144.0627033
vioscreen_betaine
254.9128853
vioscreen_betatoco
0.6509863029999999
vioscreen_biochana
0.014958906000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
250.1363014
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.78729
vioscreen_calcium_servings
6.25367
vioscreen_calories
3500.733562
vioscreen_carbo
415.9461045
vioscreen_cholest
282.61476880000004
vioscreen_choline
434.80158389999997
vioscreen_clac9t11
0.266630115
vioscreen_clat10c12
0.047150687999999996
vioscreen_copper
2.395753458
vioscreen_coumest
0.25331506600000003
vioscreen_cystine
1.248465677
vioscreen_d_cheese
1.59926022
vioscreen_d_milk
0.792767167
vioscreen_d_tot_soym
2.852466155
vioscreen_d_total
2.787287798
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
2.671561965
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.91693132
vioscreen_discfat_oil
54.62274187
vioscreen_discfat_sol
72.04967894
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0026301370000000003
vioscreen_f_citmlb
1.162684778
vioscreen_f_nj_citmlb
1.051451968
vioscreen_f_nj_other
1.97383565
vioscreen_f_nj_total
3.025315042
vioscreen_f_other
2.081260368
vioscreen_f_total
3.2439453119999997
vioscreen_fat
142.62755780000003
vioscreen_fiber
48.17041417
vioscreen_fibh2o
14.25865663
vioscreen_fibinso
33.93581175
vioscreen_finished
1/13/15
vioscreen_fish_servings
1.4259600000000001
vioscreen_fol_deqv
966.9431507000002
vioscreen_fol_nat
466.172774
vioscreen_fol_syn
294.54449910000005
vioscreen_formontn
0.00279452
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.3
vioscreen_frtsumm
6.5
vioscreen_fructose
39.19471319
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
6.401068199
vioscreen_g_total
9.851755137
vioscreen_g_whl
3.45071269
vioscreen_galactos
1.052520585
vioscreen_gammtoco
15.09419815
vioscreen_gender
false
vioscreen_genistn
2.87246562
vioscreen_glac
182.4268836
vioscreen_gltc
201.60205480000002
vioscreen_glucose
38.54849904
vioscreen_glutamic
21.37068841
vioscreen_glycine
3.609562286
vioscreen_glycitn
1.114767163
vioscreen_grams
5072.377055
vioscreen_hei2010_dairy
6.3
vioscreen_hei2010_empty_calories
16.5
vioscreen_hei2010_fatty_acids
2.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.9
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
69.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.6
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
5.8
vioscreen_hei_milk
6.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.6
vioscreen_hei_score
63.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.3
vioscreen_height
Not provided
vioscreen_histidin
2.51734268
vioscreen_inositol
0.359205481
vioscreen_iron
28.49561751
vioscreen_isoleuc
4.337697988
vioscreen_isomalt
0.0
vioscreen_joules
14647.06301
vioscreen_juice_servings
0.43737
vioscreen_lactitol
0.0
vioscreen_lactose
17.24468643
vioscreen_legumes
0.321342468
vioscreen_leucine
7.642739993999999
vioscreen_line_gi
906.5186643999999
vioscreen_low_fat_dairy_serving
1.38444
vioscreen_lutzeax
11637.14932
vioscreen_lycopene
11292.63493
vioscreen_lysine
5.7360277989999995
vioscreen_m_egg
0.32441094800000003
vioscreen_m_fish_hi
0.41556162399999996
vioscreen_m_fish_lo
0.39967124600000004
vioscreen_m_frank
0.080027395
vioscreen_m_meat
0.25879451800000003
vioscreen_m_mpf
1.543041156
vioscreen_m_nutsd
1.863479405
vioscreen_m_organ
0.0
vioscreen_m_poult
0.38898629
vioscreen_m_soy
0.100164387
vioscreen_magnes
653.9351455
vioscreen_maltitol
0.0
vioscreen_maltose
5.4716442370000005
vioscreen_mangan
8.486655207
vioscreen_mannitol
0.916849466
vioscreen_methhis3
5.446959279
vioscreen_methion
1.9755892819999998
vioscreen_mfa141
0.096493144
vioscreen_mfa161
1.684054607
vioscreen_mfa181
50.25932684
vioscreen_mfa201
0.516465738
vioscreen_mfa221
0.07021918099999999
vioscreen_mfatot
53.1385274
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
18.90945393
vioscreen_nccglbr
299.4809932
vioscreen_nccglgr
209.50772690000002
vioscreen_niacin
29.68320848
vioscreen_niacineq
50.42040882
vioscreen_nitrogen
16.54592118
vioscreen_non_fried_fish_servings
1.4259600000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.989671848
vioscreen_oxalic
786.9663527
vioscreen_oxalicm
758.763613
vioscreen_pantothe
8.606136291
vioscreen_pectins
7.226877542
vioscreen_pfa182
23.309375
vioscreen_pfa183
2.752411307
vioscreen_pfa184
0.016958903
vioscreen_pfa204
0.07158903900000001
vioscreen_pfa205
0.067369863
vioscreen_pfa225
0.027150685
vioscreen_pfa226
0.126136989
vioscreen_pfatot
26.46197025
vioscreen_phenylal
4.639205306
vioscreen_phosphor
2182.472089
vioscreen_phytic
1479.7625
vioscreen_pinitol
0.022849315
vioscreen_potass
5700.468493
vioscreen_procdate
10/28/15
vioscreen_proline
7.374110392
vioscreen_protanim
45.75224743
vioscreen_protein
101.46500429999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
55.7070152
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
622.0
vioscreen_retinol
811.5154110000001
vioscreen_rgrain
5.919478409
vioscreen_ribofla
3.291999545
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.3426299999999998
vioscreen_satoco
1.3338903979999999
vioscreen_selenium
154.93181719999998
vioscreen_serine
4.8522735180000005
vioscreen_sfa100
1.571424845
vioscreen_sfa120
1.7486030469999998
vioscreen_sfa140
5.8336452539999994
vioscreen_sfa160
26.15202804
vioscreen_sfa170
0.282273948
vioscreen_sfa180
10.95832821
vioscreen_sfa200
0.384273916
vioscreen_sfa220
0.374493157
vioscreen_sfa40
2.0317538330000002
vioscreen_sfa60
1.129506986
vioscreen_sfa80
0.722876645
vioscreen_sfatot
52.00759311
vioscreen_sodium
7089.275342
vioscreen_sorbitol
1.671862793
vioscreen_srvid
16862.0
vioscreen_starch
168.0813356
vioscreen_started
1/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.55747944
vioscreen_sucrlose
0.0
vioscreen_sucrose
49.45518515
vioscreen_sweet_servings
0.92055
vioscreen_tagatose
5.24663019
vioscreen_tfa161t
0.114438347
vioscreen_tfa181t
2.239807965
vioscreen_tfa182t
0.59969867
vioscreen_tgrain
10.90638244
vioscreen_thiamin
2.565177855
vioscreen_threonin
3.696985699
vioscreen_time
29.0
vioscreen_totaltfa
3.02871261
vioscreen_totcla
0.314438326
vioscreen_totfolat
760.7166096
vioscreen_totsugar
151.52745080000003
vioscreen_tryptoph
1.24602728
vioscreen_tyrosine
3.5687396319999998
vioscreen_user_id
16862.0
vioscreen_v_drkgr
0.781479425
vioscreen_v_orange
0.560602768
vioscreen_v_other
1.8967119609999998
vioscreen_v_potato
0.69293146
vioscreen_v_starcy
0.070027401
vioscreen_v_tomato
0.841725974
vioscreen_v_total
4.843671072
vioscreen_valine
5.173725452
vioscreen_veg5_day
6.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
9.7
vioscreen_visit
1.0
vioscreen_vita_iu
28892.65753
vioscreen_vita_rae
2120.863527
vioscreen_vita_re
3430.209247
vioscreen_vitb12
5.461041511
vioscreen_vitb6
3.441725639
vioscreen_vitc
209.0642979
vioscreen_vitd
7.754519612
vioscreen_vitd2
0.170356165
vioscreen_vitd3
7.584217814
vioscreen_vitd_iu
310.1807845
vioscreen_vite_iu
29.50315443
vioscreen_vitk
494.09456339999997
vioscreen_water
4369.557192
vioscreen_weight
Not provided
vioscreen_wgrain
4.986985967
vioscreen_whole_grain_servings
3.45071
vioscreen_xylitol
0.123890425
vioscreen_zinc
17.00399856
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)