10317.000031085; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634249
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031085
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031085
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
23.02
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
07:30
collection_timestamp
2015-07-28 07:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
137.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
c03ce4b3d415c58b24ebef3b93e9e4a3cb154be5f754ae0c35ede2b0a0b1d6e1825091c21ef5314f9e716a9eebc4293114a8149dd02ef0f830cfde083cb982f3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-77.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031085
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
29e00b8661abb399
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
Not provided
vioscreen_a_cal
Not provided
vioscreen_acesupot
Not provided
vioscreen_activity_level
Not provided
vioscreen_add_sug
Not provided
vioscreen_addsugar
Not provided
vioscreen_adsugtot
Not provided
vioscreen_age
Not provided
vioscreen_alanine
Not provided
vioscreen_alcohol
Not provided
vioscreen_alcohol_servings
Not provided
vioscreen_alphacar
Not provided
vioscreen_alphtoce
Not provided
vioscreen_alphtoco
Not provided
vioscreen_arginine
Not provided
vioscreen_ash
Not provided
vioscreen_aspartam
Not provided
vioscreen_aspartic
Not provided
vioscreen_avcarb
Not provided
vioscreen_bcodeid
Not provided
vioscreen_betacar
Not provided
vioscreen_betacryp
Not provided
vioscreen_betaine
Not provided
vioscreen_betatoco
Not provided
vioscreen_biochana
Not provided
vioscreen_bmi
Not provided
vioscreen_caffeine
Not provided
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
Not provided
vioscreen_calcium_servings
Not provided
vioscreen_calories
Not provided
vioscreen_carbo
Not provided
vioscreen_cholest
Not provided
vioscreen_choline
Not provided
vioscreen_clac9t11
Not provided
vioscreen_clat10c12
Not provided
vioscreen_copper
Not provided
vioscreen_coumest
Not provided
vioscreen_cystine
Not provided
vioscreen_d_cheese
Not provided
vioscreen_d_milk
Not provided
vioscreen_d_tot_soym
Not provided
vioscreen_d_total
Not provided
vioscreen_d_yogurt
Not provided
vioscreen_daidzein
Not provided
vioscreen_database
Not provided
vioscreen_delttoco
Not provided
vioscreen_discfat_oil
Not provided
vioscreen_discfat_sol
Not provided
vioscreen_dob
Not provided
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
Not provided
vioscreen_f_citmlb
Not provided
vioscreen_f_nj_citmlb
Not provided
vioscreen_f_nj_other
Not provided
vioscreen_f_nj_total
Not provided
vioscreen_f_other
Not provided
vioscreen_f_total
Not provided
vioscreen_fat
Not provided
vioscreen_fiber
Not provided
vioscreen_fibh2o
Not provided
vioscreen_fibinso
Not provided
vioscreen_finished
Not provided
vioscreen_fish_servings
Not provided
vioscreen_fol_deqv
Not provided
vioscreen_fol_nat
Not provided
vioscreen_fol_syn
Not provided
vioscreen_formontn
Not provided
vioscreen_fried_fish_servings
Not provided
vioscreen_fried_food_servings
Not provided
vioscreen_frt5_day
Not provided
vioscreen_frtsumm
Not provided
vioscreen_fructose
Not provided
vioscreen_fruit_servings
Not provided
vioscreen_g_nwhl
Not provided
vioscreen_g_total
Not provided
vioscreen_g_whl
Not provided
vioscreen_galactos
Not provided
vioscreen_gammtoco
Not provided
vioscreen_gender
Not provided
vioscreen_genistn
Not provided
vioscreen_glac
Not provided
vioscreen_gltc
Not provided
vioscreen_glucose
Not provided
vioscreen_glutamic
Not provided
vioscreen_glycine
Not provided
vioscreen_glycitn
Not provided
vioscreen_grams
Not provided
vioscreen_hei2010_dairy
Not provided
vioscreen_hei2010_empty_calories
Not provided
vioscreen_hei2010_fatty_acids
Not provided
vioscreen_hei2010_fruit
Not provided
vioscreen_hei2010_greens_beans
Not provided
vioscreen_hei2010_protien_foods
Not provided
vioscreen_hei2010_refined_grains
Not provided
vioscreen_hei2010_score
Not provided
vioscreen_hei2010_sea_foods_plant_protiens
Not provided
vioscreen_hei2010_sodium
Not provided
vioscreen_hei2010_veg
Not provided
vioscreen_hei2010_whole_fruit
Not provided
vioscreen_hei2010_whole_grains
Not provided
vioscreen_hei_drk_g_org_veg_leg
Not provided
vioscreen_hei_fruit
Not provided
vioscreen_hei_grains
Not provided
vioscreen_hei_meat_beans
Not provided
vioscreen_hei_milk
Not provided
vioscreen_hei_non_juice_frt
Not provided
vioscreen_hei_oils
Not provided
vioscreen_hei_sat_fat
Not provided
vioscreen_hei_score
Not provided
vioscreen_hei_sodium
Not provided
vioscreen_hei_sol_fat_alc_add_sug
Not provided
vioscreen_hei_veg
Not provided
vioscreen_hei_whl_grains
Not provided
vioscreen_height
Not provided
vioscreen_histidin
Not provided
vioscreen_inositol
Not provided
vioscreen_iron
Not provided
vioscreen_isoleuc
Not provided
vioscreen_isomalt
Not provided
vioscreen_joules
Not provided
vioscreen_juice_servings
Not provided
vioscreen_lactitol
Not provided
vioscreen_lactose
Not provided
vioscreen_legumes
Not provided
vioscreen_leucine
Not provided
vioscreen_line_gi
Not provided
vioscreen_low_fat_dairy_serving
Not provided
vioscreen_lutzeax
Not provided
vioscreen_lycopene
Not provided
vioscreen_lysine
Not provided
vioscreen_m_egg
Not provided
vioscreen_m_fish_hi
Not provided
vioscreen_m_fish_lo
Not provided
vioscreen_m_frank
Not provided
vioscreen_m_meat
Not provided
vioscreen_m_mpf
Not provided
vioscreen_m_nutsd
Not provided
vioscreen_m_organ
Not provided
vioscreen_m_poult
Not provided
vioscreen_m_soy
Not provided
vioscreen_magnes
Not provided
vioscreen_maltitol
Not provided
vioscreen_maltose
Not provided
vioscreen_mangan
Not provided
vioscreen_mannitol
Not provided
vioscreen_methhis3
Not provided
vioscreen_methion
Not provided
vioscreen_mfa141
Not provided
vioscreen_mfa161
Not provided
vioscreen_mfa181
Not provided
vioscreen_mfa201
Not provided
vioscreen_mfa221
Not provided
vioscreen_mfatot
Not provided
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
Not provided
vioscreen_nccglbr
Not provided
vioscreen_nccglgr
Not provided
vioscreen_niacin
Not provided
vioscreen_niacineq
Not provided
vioscreen_nitrogen
Not provided
vioscreen_non_fried_fish_servings
Not provided
vioscreen_nutrient_recommendation
Not provided
vioscreen_omega3
Not provided
vioscreen_oxalic
Not provided
vioscreen_oxalicm
Not provided
vioscreen_pantothe
Not provided
vioscreen_pectins
Not provided
vioscreen_pfa182
Not provided
vioscreen_pfa183
Not provided
vioscreen_pfa184
Not provided
vioscreen_pfa204
Not provided
vioscreen_pfa205
Not provided
vioscreen_pfa225
Not provided
vioscreen_pfa226
Not provided
vioscreen_pfatot
Not provided
vioscreen_phenylal
Not provided
vioscreen_phosphor
Not provided
vioscreen_phytic
Not provided
vioscreen_pinitol
Not provided
vioscreen_potass
Not provided
vioscreen_procdate
Not provided
vioscreen_proline
Not provided
vioscreen_protanim
Not provided
vioscreen_protein
Not provided
vioscreen_protocol
Not provided
vioscreen_protveg
Not provided
vioscreen_questionnaire
Not provided
vioscreen_recno
Not provided
vioscreen_retinol
Not provided
vioscreen_rgrain
Not provided
vioscreen_ribofla
Not provided
vioscreen_sacchar
Not provided
vioscreen_salad_vegetable_servings
Not provided
vioscreen_satoco
Not provided
vioscreen_scf
Not provided
vioscreen_scfv
Not provided
vioscreen_selenium
Not provided
vioscreen_serine
Not provided
vioscreen_sfa100
Not provided
vioscreen_sfa120
Not provided
vioscreen_sfa140
Not provided
vioscreen_sfa160
Not provided
vioscreen_sfa170
Not provided
vioscreen_sfa180
Not provided
vioscreen_sfa200
Not provided
vioscreen_sfa220
Not provided
vioscreen_sfa40
Not provided
vioscreen_sfa60
Not provided
vioscreen_sfa80
Not provided
vioscreen_sfatot
Not provided
vioscreen_sodium
Not provided
vioscreen_sorbitol
Not provided
vioscreen_srvid
Not provided
vioscreen_starch
Not provided
vioscreen_started
Not provided
vioscreen_subject_id
Not provided
vioscreen_sucpoly
Not provided
vioscreen_sucrlose
Not provided
vioscreen_sucrose
Not provided
vioscreen_sweet_servings
Not provided
vioscreen_tagatose
Not provided
vioscreen_tfa161t
Not provided
vioscreen_tfa181t
Not provided
vioscreen_tfa182t
Not provided
vioscreen_tgrain
Not provided
vioscreen_thiamin
Not provided
vioscreen_threonin
Not provided
vioscreen_time
Not provided
vioscreen_totaltfa
Not provided
vioscreen_totcla
Not provided
vioscreen_totfolat
Not provided
vioscreen_totsugar
Not provided
vioscreen_tryptoph
Not provided
vioscreen_tyrosine
Not provided
vioscreen_user_id
Not provided
vioscreen_v_drkgr
Not provided
vioscreen_v_orange
Not provided
vioscreen_v_other
Not provided
vioscreen_v_potato
Not provided
vioscreen_v_starcy
Not provided
vioscreen_v_tomato
Not provided
vioscreen_v_total
Not provided
vioscreen_valine
Not provided
vioscreen_veg5_day
Not provided
vioscreen_vegetable_servings
Not provided
vioscreen_vegsumm
Not provided
vioscreen_visit
Not provided
vioscreen_vita_iu
Not provided
vioscreen_vita_rae
Not provided
vioscreen_vita_re
Not provided
vioscreen_vitb12
Not provided
vioscreen_vitb6
Not provided
vioscreen_vitc
Not provided
vioscreen_vitd
Not provided
vioscreen_vitd2
Not provided
vioscreen_vitd3
Not provided
vioscreen_vitd_iu
Not provided
vioscreen_vite_iu
Not provided
vioscreen_vitk
Not provided
vioscreen_water
Not provided
vioscreen_weight
Not provided
vioscreen_wgrain
Not provided
vioscreen_whole_grain_servings
Not provided
vioscreen_xylitol
Not provided
vioscreen_zinc
Not provided
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)