American Gut Project; 10317.000029540
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634060
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029540
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29540
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
27.1
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-08-28
collection month
August
collection season
Summer
collection time
08:00
collection_timestamp
2015-08-28 08:00
consume_animal_products_abx
Not sure
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
10.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
5eab05b8504dda9ef3494394b61e70e02cd8eff2193b187128e0be76d1d092aeb09328c31dfd2e5b185c84d53df4cdcfe2aaf5345a0ff9b431e710d6383b7e39
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
50.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-4.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029540
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
53e45e5fd315aec3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.533479372
vioscreen_a_cal
191.44021830000003
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.337534113
vioscreen_addsugar
21.52605282
vioscreen_adsugtot
19.36112211
vioscreen_age
215.0
vioscreen_alanine
6.833287404
vioscreen_alcohol
23.97578125
vioscreen_alcohol_servings
1.53348
vioscreen_alphacar
5849.371918
vioscreen_alphtoce
17.94399749
vioscreen_alphtoco
17.14586366
vioscreen_arginine
8.053479506
vioscreen_ash
30.00317584
vioscreen_aspartam
0.0
vioscreen_aspartic
12.84323363
vioscreen_avcarb
151.5671447
vioscreen_bcodeid
Not provided
vioscreen_betacar
24632.44658
vioscreen_betacryp
552.1990582000001
vioscreen_betaine
130.8072239
vioscreen_betatoco
0.280246557
vioscreen_biochana
0.022547944
vioscreen_bmi
Not provided
vioscreen_caffeine
414.3373716
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.54356
vioscreen_calcium_servings
2.81907
vioscreen_calories
2030.3121579999997
vioscreen_carbo
190.7350599
vioscreen_cholest
625.7151541000001
vioscreen_choline
739.9590753
vioscreen_clac9t11
0.0899452
vioscreen_clat10c12
0.01931507
vioscreen_copper
2.1967944
vioscreen_coumest
0.17835616
vioscreen_cystine
1.6318904509999999
vioscreen_d_cheese
0.001808219
vioscreen_d_milk
0.29249313600000004
vioscreen_d_tot_soym
0.543561627
vioscreen_d_total
0.543561627
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.221041097
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.219232763
vioscreen_discfat_oil
20.20287885
vioscreen_discfat_sol
27.40956496
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001808219
vioscreen_f_citmlb
0.8733424359999999
vioscreen_f_nj_citmlb
0.8604657729999999
vioscreen_f_nj_other
1.628356097
vioscreen_f_nj_total
2.488849295
vioscreen_f_other
1.628356097
vioscreen_f_total
2.5016986169999997
vioscreen_fat
73.83700771
vioscreen_fiber
39.16918076
vioscreen_fibh2o
10.51646578
vioscreen_fibinso
28.66540026
vioscreen_finished
8/28/15
vioscreen_fish_servings
9.99865
vioscreen_fol_deqv
548.7252139999999
vioscreen_fol_nat
533.2243579
vioscreen_fol_syn
9.113560841
vioscreen_formontn
0.0031232879999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.0
vioscreen_fructose
30.025644800000002
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.364630169
vioscreen_g_total
0.7807397290000001
vioscreen_g_whl
0.416109602
vioscreen_galactos
0.531315048
vioscreen_gammtoco
6.766410932
vioscreen_gender
false
vioscreen_genistn
0.192383565
vioscreen_glac
51.79846961
vioscreen_gltc
61.77463078
vioscreen_glucose
26.53227472
vioscreen_glutamic
20.38909594
vioscreen_glycine
5.9705472760000005
vioscreen_glycitn
0.005232877
vioscreen_grams
7039.743151000001
vioscreen_hei2010_dairy
2.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.3
vioscreen_hei_sat_fat
8.3
vioscreen_hei_score
66.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
3.3286577619999997
vioscreen_inositol
0.272465745
vioscreen_iron
14.991673800000001
vioscreen_isoleuc
5.801836071
vioscreen_isomalt
0.0
vioscreen_joules
8494.824658
vioscreen_juice_servings
0.0257
vioscreen_lactitol
0.0
vioscreen_lactose
7.055863388
vioscreen_legumes
0.22183562
vioscreen_leucine
9.457451306
vioscreen_line_gi
384.071661
vioscreen_low_fat_dairy_serving
0.46967
vioscreen_lutzeax
14780.21233
vioscreen_lycopene
7717.707534
vioscreen_lysine
9.724219419
vioscreen_m_egg
1.58569871
vioscreen_m_fish_hi
2.338904143
vioscreen_m_fish_lo
3.359123502
vioscreen_m_frank
0.079150683
vioscreen_m_meat
0.266684921
vioscreen_m_mpf
10.85556239
vioscreen_m_nutsd
1.0937534279999999
vioscreen_m_organ
0.0
vioscreen_m_poult
4.811780956000001
vioscreen_m_soy
0.001753425
vioscreen_magnes
521.9684503000001
vioscreen_maltitol
0.0
vioscreen_maltose
1.662438129
vioscreen_mangan
6.181589121
vioscreen_mannitol
1.175315042
vioscreen_methhis3
34.38339576
vioscreen_methion
3.117725947
vioscreen_mfa141
0.019808218
vioscreen_mfa161
1.7632053319999998
vioscreen_mfa181
27.89238014
vioscreen_mfa201
0.6080821829999999
vioscreen_mfa221
0.364958881
vioscreen_mfatot
30.87925942
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.14586366
vioscreen_nccglbr
104.0014983
vioscreen_nccglgr
72.74782748
vioscreen_niacin
32.11947506
vioscreen_niacineq
55.52742402
vioscreen_nitrogen
20.08926183
vioscreen_non_fried_fish_servings
9.99865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.475123241
vioscreen_oxalic
765.5329623
vioscreen_oxalicm
775.7844177999999
vioscreen_pantothe
8.817889822
vioscreen_pectins
7.851725706
vioscreen_pfa182
10.90654765
vioscreen_pfa183
1.094164621
vioscreen_pfa184
0.087561641
vioscreen_pfa204
0.395945217
vioscreen_pfa205
0.384657518
vioscreen_pfa225
0.14405479999999998
vioscreen_pfa226
0.765616388
vioscreen_pfatot
14.00156116
vioscreen_phenylal
5.287808353
vioscreen_phosphor
1657.498801
vioscreen_phytic
613.9062928
vioscreen_pinitol
0.002493151
vioscreen_potass
5524.32089
vioscreen_procdate
10/28/15
vioscreen_proline
5.626575878
vioscreen_protanim
96.48171019
vioscreen_protein
124.86329199999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.37734375
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
169.0
vioscreen_retinol
384.5506421
vioscreen_rgrain
0.380383552
vioscreen_ribofla
2.527260475
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.9429300000000005
vioscreen_satoco
0.0
vioscreen_selenium
161.0912136
vioscreen_serine
5.4542467089999995
vioscreen_sfa100
0.349369875
vioscreen_sfa120
0.42619169100000004
vioscreen_sfa140
1.49293146
vioscreen_sfa160
12.97315122
vioscreen_sfa170
0.131369876
vioscreen_sfa180
4.519863013999999
vioscreen_sfa200
0.16602740400000002
vioscreen_sfa220
0.19936985399999999
vioscreen_sfa40
0.441041168
vioscreen_sfa60
0.269315077
vioscreen_sfa80
0.165945194
vioscreen_sfatot
21.47172383
vioscreen_sodium
4422.515753
vioscreen_sorbitol
1.129424631
vioscreen_srvid
20517.0
vioscreen_starch
33.15229827
vioscreen_started
8/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.23120452
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
1.88506846
vioscreen_tfa161t
0.031095891
vioscreen_tfa181t
1.238712509
vioscreen_tfa182t
0.155863012
vioscreen_tgrain
0.738547965
vioscreen_thiamin
1.29769864
vioscreen_threonin
5.259424163
vioscreen_time
19.0
vioscreen_totaltfa
1.4730684459999999
vioscreen_totcla
0.109890402
vioscreen_totfolat
542.3379281
vioscreen_totsugar
93.03248074
vioscreen_tryptoph
1.403479506
vioscreen_tyrosine
4.217808553999999
vioscreen_user_id
20517.0
vioscreen_v_drkgr
1.115479435
vioscreen_v_orange
1.216986251
vioscreen_v_other
2.9638354160000002
vioscreen_v_potato
0.217287685
vioscreen_v_starcy
0.395342474
vioscreen_v_tomato
0.9972602740000001
vioscreen_v_total
6.906164383999999
vioscreen_valine
6.271287056
vioscreen_veg5_day
14.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
13.8
vioscreen_visit
1.0
vioscreen_vita_iu
47670.53151
vioscreen_vita_rae
2703.986473
vioscreen_vita_re
5023.425
vioscreen_vitb12
6.932136933
vioscreen_vitb6
3.424904016
vioscreen_vitc
366.9418664
vioscreen_vitd
14.30862853
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
14.307862
vioscreen_vitd_iu
572.3451413
vioscreen_vite_iu
25.55410959
vioscreen_vitk
538.9238014
vioscreen_water
6620.280822
vioscreen_weight
Not provided
vioscreen_wgrain
0.358164414
vioscreen_whole_grain_servings
0.41611000000000004
vioscreen_xylitol
0.10073971699999999
vioscreen_zinc
14.30235579
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
83.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)