American Gut Project; 10317.000028690
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633623
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028690
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28690
antibiotic_history
Not provided
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
28.73
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
22:45
collection_timestamp
2015-07-07 22:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
495.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
802cc467268389f36ec624e9d7dc056f5f6c779f84de1fb98a641aaf47114644e64c78555b0283d552d44cd857112def736104d7f72fe52ff8521d47bc9a060c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
41.5
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-78.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028690
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Not provided
sleep_duration
6-7 hours
smoking_frequency
Occasionally (1-2 times/week)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
4b47260b09f868f5
teethbrushing_frequency
Not provided
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.072876645
vioscreen_a_cal
133.4930116
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.620273705
vioscreen_addsugar
24.69865689
vioscreen_adsugtot
23.89750642
vioscreen_age
215.0
vioscreen_alanine
2.7609037219999997
vioscreen_alcohol
16.14676664
vioscreen_alcohol_servings
1.0728799999999998
vioscreen_alphacar
102.1066353
vioscreen_alphtoce
10.22473981
vioscreen_alphtoco
9.276904297
vioscreen_arginine
3.6480823260000004
vioscreen_ash
15.29534193
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
5.679095543
vioscreen_avcarb
92.48145334
vioscreen_bcodeid
Not provided
vioscreen_betacar
2807.189041
vioscreen_betacryp
400.56190069999997
vioscreen_betaine
25.27991492
vioscreen_betatoco
0.375178089
vioscreen_biochana
0.002958904
vioscreen_bmi
Not provided
vioscreen_caffeine
377.0398973
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.53441
vioscreen_calcium_servings
1.31984
vioscreen_calories
1234.223459
vioscreen_carbo
111.9557149
vioscreen_cholest
146.6561323
vioscreen_choline
241.28923369999998
vioscreen_clac9t11
0.045726024000000004
vioscreen_clat10c12
0.011671233999999999
vioscreen_copper
1.099369749
vioscreen_coumest
0.266520545
vioscreen_cystine
0.6410958489999999
vioscreen_d_cheese
0.380383552
vioscreen_d_milk
0.096520547
vioscreen_d_tot_soym
0.534410952
vioscreen_d_total
0.534410952
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.270328762
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.748082158
vioscreen_discfat_oil
20.84071329
vioscreen_discfat_sol
11.02931427
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001589041
vioscreen_f_citmlb
0.738547882
vioscreen_f_nj_citmlb
0.733287655
vioscreen_f_nj_other
1.055424688
vioscreen_f_nj_total
1.788739766
vioscreen_f_other
1.055424688
vioscreen_f_total
1.794027417
vioscreen_fat
55.37981057
vioscreen_fiber
19.47416524
vioscreen_fibh2o
8.138136772000001
vioscreen_fibinso
11.363587599999999
vioscreen_finished
7/6/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
252.0191139
vioscreen_fol_nat
242.2533176
vioscreen_fol_syn
5.73353422
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.6
vioscreen_fructose
17.55906865
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.326520549
vioscreen_g_total
0.39684933200000005
vioscreen_g_whl
0.070328767
vioscreen_galactos
0.2201096
vioscreen_gammtoco
7.93712409
vioscreen_gender
false
vioscreen_genistn
0.099561644
vioscreen_glac
34.01783497
vioscreen_gltc
37.80356378
vioscreen_glucose
17.0945754
vioscreen_glutamic
10.72065764
vioscreen_glycine
2.559205439
vioscreen_glycitn
0.0
vioscreen_grams
3708.5760270000005
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
8.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.8
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.4
vioscreen_hei_drk_g_org_veg_leg
1.9
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.2
vioscreen_hei_score
66.9
vioscreen_hei_sodium
4.1
vioscreen_hei_sol_fat_alc_add_sug
15.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.67923283
vioscreen_inositol
0.113589039
vioscreen_iron
6.768274427000001
vioscreen_isoleuc
2.602575516
vioscreen_isomalt
0.0
vioscreen_joules
5163.988699
vioscreen_juice_servings
0.01052
vioscreen_lactitol
0.0
vioscreen_lactose
4.8255340989999995
vioscreen_legumes
0.020219178
vioscreen_leucine
4.48120552
vioscreen_line_gi
208.7169521
vioscreen_low_fat_dairy_serving
0.30427
vioscreen_lutzeax
1071.7742289999999
vioscreen_lycopene
6327.450685
vioscreen_lysine
4.115095917
vioscreen_m_egg
0.265369865
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.028712328
vioscreen_m_meat
1.268931517
vioscreen_m_mpf
3.201315015
vioscreen_m_nutsd
2.28476713
vioscreen_m_organ
0.0
vioscreen_m_poult
1.903671306
vioscreen_m_soy
0.0
vioscreen_magnes
260.6127783
vioscreen_maltitol
0.0
vioscreen_maltose
0.669452072
vioscreen_mangan
2.258849429
vioscreen_mannitol
0.128356171
vioscreen_methhis3
13.36588988
vioscreen_methion
1.286465747
vioscreen_mfa141
0.053424658
vioscreen_mfa161
0.961780788
vioscreen_mfa181
21.30298721
vioscreen_mfa201
0.24731505899999998
vioscreen_mfa221
0.006109589
vioscreen_mfatot
22.78580908
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.276904297
vioscreen_nccglbr
72.22306293
vioscreen_nccglgr
50.52772902
vioscreen_niacin
17.19539812
vioscreen_niacineq
27.532823200000003
vioscreen_nitrogen
9.587999652
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.8018903340000001
vioscreen_oxalic
147.1530608
vioscreen_oxalicm
170.5752783
vioscreen_pantothe
5.843616224
vioscreen_pectins
3.645698777
vioscreen_pfa182
10.88389006
vioscreen_pfa183
0.749342325
vioscreen_pfa184
0.000547945
vioscreen_pfa204
0.110712339
vioscreen_pfa205
0.00630137
vioscreen_pfa225
0.018931508
vioscreen_pfa226
0.027315072000000003
vioscreen_pfatot
11.84495933
vioscreen_phenylal
2.539753451
vioscreen_phosphor
812.9447774
vioscreen_phytic
444.4534675
vioscreen_pinitol
0.0
vioscreen_potass
2668.81524
vioscreen_procdate
10/28/15
vioscreen_proline
3.486082647
vioscreen_protanim
41.59227312
vioscreen_protein
58.81541631
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.22611034
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
315.0
vioscreen_retinol
87.53425193
vioscreen_rgrain
0.36610960200000003
vioscreen_ribofla
1.653671306
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.2587900000000003
vioscreen_satoco
0.0
vioscreen_selenium
66.46879816
vioscreen_serine
2.6733423519999997
vioscreen_sfa100
0.157095891
vioscreen_sfa120
0.20928767
vioscreen_sfa140
0.931452085
vioscreen_sfa160
8.854302226
vioscreen_sfa170
0.052410957
vioscreen_sfa180
3.853123328
vioscreen_sfa200
0.174164404
vioscreen_sfa220
0.335589035
vioscreen_sfa40
0.24553425399999998
vioscreen_sfa60
0.07265753
vioscreen_sfa80
0.067726026
vioscreen_sfatot
15.25380859
vioscreen_sodium
1900.780479
vioscreen_sorbitol
0.08432877400000001
vioscreen_srvid
20079.0
vioscreen_starch
17.42786146
vioscreen_started
7/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.87169975
vioscreen_sweet_servings
0.49863
vioscreen_tagatose
2.642410905
vioscreen_tfa161t
0.02147945
vioscreen_tfa181t
0.609862989
vioscreen_tfa182t
0.236986301
vioscreen_tgrain
0.404438385
vioscreen_thiamin
0.710849292
vioscreen_threonin
2.230931112
vioscreen_time
19.0
vioscreen_totaltfa
0.890547912
vioscreen_totcla
0.058328764000000005
vioscreen_totfolat
247.9868579
vioscreen_totsugar
61.17252247
vioscreen_tryptoph
0.620301338
vioscreen_tyrosine
2.119452155
vioscreen_user_id
20079.0
vioscreen_v_drkgr
0.169232878
vioscreen_v_orange
0.0
vioscreen_v_other
1.06136993
vioscreen_v_potato
0.17660273699999998
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.366630157
vioscreen_v_total
1.7739453459999999
vioscreen_valine
2.948246535
vioscreen_veg5_day
4.8
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
3.5
vioscreen_visit
1.0
vioscreen_vita_iu
5389.428767
vioscreen_vita_rae
342.4126284
vioscreen_vita_re
597.2887842
vioscreen_vitb12
1.84709573
vioscreen_vitb6
1.747698891
vioscreen_vitc
174.6852312
vioscreen_vitd
0.636575317
vioscreen_vitd2
0.000410959
vioscreen_vitd3
0.636191799
vioscreen_vitd_iu
25.463012699999997
vioscreen_vite_iu
13.79953312
vioscreen_vitk
67.6226723
vioscreen_water
3461.7808219999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.038328766
vioscreen_whole_grain_servings
0.07032999999999999
vioscreen_xylitol
0.044356161
vioscreen_zinc
7.654357074
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
80.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)