American Gut Project; 10317.000026616
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633170
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026616
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
50.0
age_corrected
50.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26616
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
36.65
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-29
collection month
April
collection season
Spring
collection time
18:00
collection_timestamp
2015-04-29 18:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
76.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
64a2e526e7edefa7b76bb9f3b3e847ef063471371ab6a33600ada342ba85c1fa29b078f7790945defb6d1d9ffaeef80e7bc00ebe3b3f9b0584d63eeda7e59661
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-73.4
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026616
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f3427ea71b86d05c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.13057534199999998
vioscreen_a_cal
12.82139742
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.523068278999999
vioscreen_addsugar
31.05008294
vioscreen_adsugtot
20.20032909
vioscreen_age
215.0
vioscreen_alanine
4.3231508860000005
vioscreen_alcohol
1.8326574869999999
vioscreen_alcohol_servings
0.13058
vioscreen_alphacar
3575.187671
vioscreen_alphtoce
17.61257358
vioscreen_alphtoco
16.37246629
vioscreen_arginine
5.1244655660000005
vioscreen_ash
19.64383562
vioscreen_aspartam
0.0
vioscreen_aspartic
8.272027504
vioscreen_avcarb
116.4948844
vioscreen_bcodeid
Not provided
vioscreen_betacar
24173.44384
vioscreen_betacryp
368.1856164
vioscreen_betaine
105.72701200000002
vioscreen_betatoco
0.31775347600000003
vioscreen_biochana
0.012
vioscreen_bmi
Not provided
vioscreen_caffeine
179.6463399
vioscreen_calcium
true
vioscreen_calcium_avg
1500.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.1943
vioscreen_calcium_servings
1.90647
vioscreen_calories
1721.5875
vioscreen_carbo
146.90551159999998
vioscreen_cholest
440.48416100000003
vioscreen_choline
523.6619435
vioscreen_clac9t11
0.069342464
vioscreen_clat10c12
0.021452057000000004
vioscreen_copper
1.6004932980000002
vioscreen_coumest
0.022630137999999998
vioscreen_cystine
1.098849362
vioscreen_d_cheese
0.000410959
vioscreen_d_milk
0.117205476
vioscreen_d_tot_soym
0.194301365
vioscreen_d_total
0.194301365
vioscreen_d_yogurt
0.076684931
vioscreen_daidzein
0.029698627999999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.608849429
vioscreen_discfat_oil
29.34471319
vioscreen_discfat_sol
30.41375482
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000520548
vioscreen_f_citmlb
0.093643836
vioscreen_f_nj_citmlb
0.076356167
vioscreen_f_nj_other
1.25983569
vioscreen_f_nj_total
1.336191757
vioscreen_f_other
1.25983569
vioscreen_f_total
1.353479422
vioscreen_fat
96.21801156
vioscreen_fiber
30.41080105
vioscreen_fibh2o
7.6058078710000006
vioscreen_fibinso
22.85243739
vioscreen_finished
4/14/15
vioscreen_fish_servings
2.90788
vioscreen_fol_deqv
525.3561216
vioscreen_fol_nat
506.79443489999994
vioscreen_fol_syn
10.91764368
vioscreen_formontn
0.0014246570000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
2.7
vioscreen_fructose
12.41098432
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.294767134
vioscreen_g_total
0.864821928
vioscreen_g_whl
0.570054815
vioscreen_galactos
0.250000021
vioscreen_gammtoco
10.88249411
vioscreen_gender
false
vioscreen_genistn
0.039890409
vioscreen_glac
41.537783600000004
vioscreen_gltc
46.31942423
vioscreen_glucose
15.60339523
vioscreen_glutamic
12.88000054
vioscreen_glycine
3.834329182
vioscreen_glycitn
0.000821918
vioscreen_grams
3736.819178
vioscreen_hei2010_dairy
0.9
vioscreen_hei2010_empty_calories
17.9
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.3
vioscreen_hei_score
66.8
vioscreen_hei_sodium
1.8
vioscreen_hei_sol_fat_alc_add_sug
18.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
2.1666301569999997
vioscreen_inositol
0.051479455
vioscreen_iron
11.58912136
vioscreen_isoleuc
3.5609589039999996
vioscreen_isomalt
0.0
vioscreen_joules
7203.117123
vioscreen_juice_servings
0.0346
vioscreen_lactitol
0.0
vioscreen_lactose
2.641753398
vioscreen_legumes
0.015726027
vioscreen_leucine
5.896685038999999
vioscreen_line_gi
218.5780394
vioscreen_low_fat_dairy_serving
0.07668
vioscreen_lutzeax
20638.161640000002
vioscreen_lycopene
4057.674658
vioscreen_lysine
5.795341931
vioscreen_m_egg
1.523945179
vioscreen_m_fish_hi
1.050137036
vioscreen_m_fish_lo
0.606958886
vioscreen_m_frank
0.079150683
vioscreen_m_meat
2.7337261880000003
vioscreen_m_mpf
5.602301276
vioscreen_m_nutsd
1.312602756
vioscreen_m_organ
0.0
vioscreen_m_poult
1.132383582
vioscreen_m_soy
0.000109589
vioscreen_magnes
379.16528250000005
vioscreen_maltitol
0.0
vioscreen_maltose
3.6296985360000003
vioscreen_mangan
5.362931092
vioscreen_mannitol
0.49027392200000003
vioscreen_methhis3
21.66857609
vioscreen_methion
1.8703288880000002
vioscreen_mfa141
0.08882192300000001
vioscreen_mfa161
1.993068413
vioscreen_mfa181
41.79134204
vioscreen_mfa201
0.495123249
vioscreen_mfa221
0.203041098
vioscreen_mfatot
44.77071383
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.37246629
vioscreen_nccglbr
96.23922303
vioscreen_nccglgr
67.31052012
vioscreen_niacin
21.52233251
vioscreen_niacineq
35.833315500000005
vioscreen_nitrogen
12.77890625
vioscreen_non_fried_fish_servings
2.90788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.491589021
vioscreen_oxalic
817.5171232999999
vioscreen_oxalicm
803.0796232999999
vioscreen_pantothe
6.628547731
vioscreen_pectins
6.755177119
vioscreen_pfa182
16.57778387
vioscreen_pfa183
1.913068714
vioscreen_pfa184
0.041726029
vioscreen_pfa204
0.219890417
vioscreen_pfa205
0.148958901
vioscreen_pfa225
0.063698635
vioscreen_pfa226
0.324931503
vioscreen_pfatot
19.39186243
vioscreen_phenylal
3.427370505
vioscreen_phosphor
1089.026798
vioscreen_phytic
615.1901541
vioscreen_pinitol
0.000273973
vioscreen_potass
4130.183219
vioscreen_procdate
10/28/15
vioscreen_proline
3.567424617
vioscreen_protanim
55.65717573
vioscreen_protein
78.8653628
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.2084359
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
479.0
vioscreen_retinol
221.85502999999997
vioscreen_rgrain
0.299095885
vioscreen_ribofla
1.708356131
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.114380000000001
vioscreen_satoco
0.0
vioscreen_selenium
104.87541740000002
vioscreen_serine
3.6683556960000003
vioscreen_sfa100
0.195178076
vioscreen_sfa120
0.256493116
vioscreen_sfa140
1.105753525
vioscreen_sfa160
14.90679581
vioscreen_sfa170
0.097780829
vioscreen_sfa180
5.948466262
vioscreen_sfa200
0.19884929899999998
vioscreen_sfa220
0.256465755
vioscreen_sfa40
0.226082203
vioscreen_sfa60
0.12520548199999998
vioscreen_sfa80
0.083753429
vioscreen_sfatot
23.59473727
vioscreen_sodium
3102.1623289999998
vioscreen_sorbitol
0.38035612799999996
vioscreen_srvid
18507.0
vioscreen_starch
37.03128746
vioscreen_started
4/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.58931667
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
2.020082071
vioscreen_tfa161t
0.032657534
vioscreen_tfa181t
2.811780956
vioscreen_tfa182t
0.7027397259999999
vioscreen_tgrain
0.8689589409999999
vioscreen_thiamin
1.104274217
vioscreen_threonin
3.3536714739999995
vioscreen_time
18.0
vioscreen_totaltfa
3.5536162910000004
vioscreen_totcla
0.091150676
vioscreen_totfolat
517.7118151000001
vioscreen_totsugar
53.87285424
vioscreen_tryptoph
0.858301283
vioscreen_tyrosine
2.647424316
vioscreen_user_id
18507.0
vioscreen_v_drkgr
1.516246555
vioscreen_v_orange
0.9558082059999999
vioscreen_v_other
1.9086029469999999
vioscreen_v_potato
0.41016436
vioscreen_v_starcy
0.010657534
vioscreen_v_tomato
0.550191759
vioscreen_v_total
5.351671527
vioscreen_valine
3.986685306
vioscreen_veg5_day
14.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
10.7
vioscreen_visit
1.0
vioscreen_vita_iu
44313.17808
vioscreen_vita_rae
2400.618322
vioscreen_vita_re
4579.378082
vioscreen_vitb12
4.348876618999999
vioscreen_vitb6
2.7013691939999998
vioscreen_vitc
252.2206122
vioscreen_vitd
7.160683995
vioscreen_vitd2
0.000630137
vioscreen_vitd3
7.160081336
vioscreen_vitd_iu
286.42735980000003
vioscreen_vite_iu
24.43103596
vioscreen_vitk
902.3137842
vioscreen_water
3404.178082
vioscreen_weight
Not provided
vioscreen_wgrain
0.569863014
vioscreen_whole_grain_servings
0.57005
vioscreen_xylitol
0.029561646
vioscreen_zinc
10.80780849
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
106.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never