American Gut Project; 10317.000033785
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634371
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033785
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
33.0
age_corrected
33.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033785
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
21.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-14
collection month
September
collection season
Fall
collection time
06:05
collection_timestamp
2015-09-14 06:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
El Salvador
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southwest
elevation
27.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Month
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ae22d728caa23239dd6496ab9293c7dc184bea06604f2c9c42e49d11ddf4af0198920b2405c9df318e1ba535e6614af9e4d79766dcae3344b5e909cc688cf0c9
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
29.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-95.7
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Hispanic
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000033785
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f83d25c0f8fbc142
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.15832821
vioscreen_addsugar
49.43110017
vioscreen_adsugtot
42.9657775
vioscreen_age
215.0
vioscreen_alanine
5.625672892000001
vioscreen_alcohol
0.024547945
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
1018.5741439999999
vioscreen_alphtoce
15.96424444
vioscreen_alphtoco
12.95438115
vioscreen_arginine
6.736162912
vioscreen_ash
22.68068814
vioscreen_aspartam
0.0
vioscreen_aspartic
10.80594499
vioscreen_avcarb
215.15969610000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
6578.011644
vioscreen_betacryp
183.9205479
vioscreen_betaine
153.68955480000002
vioscreen_betatoco
0.5253149579999999
vioscreen_biochana
0.019753426
vioscreen_bmi
Not provided
vioscreen_caffeine
7.13353422
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.3105200000000001
vioscreen_calcium_servings
3.4671800000000004
vioscreen_calories
2176.098116
vioscreen_carbo
246.4356164
vioscreen_cholest
390.94293660000005
vioscreen_choline
511.55779110000003
vioscreen_clac9t11
0.07356165
vioscreen_clat10c12
0.017013701000000003
vioscreen_copper
2.0021096430000003
vioscreen_coumest
0.08728767300000001
vioscreen_cystine
1.41720556
vioscreen_d_cheese
0.43676711799999995
vioscreen_d_milk
0.280219175
vioscreen_d_tot_soym
1.334958847
vioscreen_d_total
1.310520538
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
11.12915173
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.542001217
vioscreen_discfat_oil
28.92279538
vioscreen_discfat_sol
32.36484643
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003178082
vioscreen_f_citmlb
1.210684831
vioscreen_f_nj_citmlb
1.12536989
vioscreen_f_nj_other
1.327917815
vioscreen_f_nj_total
2.453287537
vioscreen_f_other
1.3623014269999998
vioscreen_f_total
2.57298584
vioscreen_fat
88.39643622
vioscreen_fiber
31.17037404
vioscreen_fibh2o
8.660356245
vioscreen_fibinso
22.50107288
vioscreen_finished
9/6/15
vioscreen_fish_servings
5.78673
vioscreen_fol_deqv
464.7962329
vioscreen_fol_nat
314.867958
vioscreen_fol_syn
88.18479773
vioscreen_formontn
0.007041096
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.1
vioscreen_frtsumm
5.1
vioscreen_fructose
22.79024775
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.652849422
vioscreen_g_total
6.33238308
vioscreen_g_whl
2.6795065680000003
vioscreen_galactos
0.9519999459999999
vioscreen_gammtoco
14.88627328
vioscreen_gender
false
vioscreen_genistn
16.86643167
vioscreen_glac
103.8249358
vioscreen_gltc
116.1745612
vioscreen_glucose
21.41222175
vioscreen_glutamic
19.80082005
vioscreen_glycine
4.893040989
vioscreen_glycitn
1.936082145
vioscreen_grams
3137.937329
vioscreen_hei2010_dairy
4.7
vioscreen_hei2010_empty_calories
18.6
vioscreen_hei2010_fatty_acids
7.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.8
vioscreen_hei2010_veg
4.3
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.4
vioscreen_hei_score
81.7
vioscreen_hei_sodium
2.2
vioscreen_hei_sol_fat_alc_add_sug
19.2
vioscreen_hei_veg
4.3
vioscreen_hei_whl_grains
4.1
vioscreen_height
Not provided
vioscreen_histidin
2.99443861
vioscreen_inositol
0.126410989
vioscreen_iron
15.67048908
vioscreen_isoleuc
5.037808687
vioscreen_isomalt
0.0
vioscreen_joules
9104.787671
vioscreen_juice_servings
0.23934
vioscreen_lactitol
0.0
vioscreen_lactose
12.50441192
vioscreen_legumes
0.438821955
vioscreen_leucine
8.731124251
vioscreen_line_gi
518.107363
vioscreen_low_fat_dairy_serving
0.6381399999999999
vioscreen_lutzeax
2952.593493
vioscreen_lycopene
7665.462329000001
vioscreen_lysine
7.793097175
vioscreen_m_egg
1.088356081
vioscreen_m_fish_hi
1.647123321
vioscreen_m_fish_lo
1.6507123559999999
vioscreen_m_frank
0.275424654
vioscreen_m_meat
1.437945306
vioscreen_m_mpf
6.229753719
vioscreen_m_nutsd
1.7750137119999998
vioscreen_m_organ
0.0
vioscreen_m_poult
1.218739716
vioscreen_m_soy
0.826684988
vioscreen_magnes
449.87572769999997
vioscreen_maltitol
0.0
vioscreen_maltose
4.073699031
vioscreen_mangan
5.156466382
vioscreen_mannitol
0.394821752
vioscreen_methhis3
20.27841128
vioscreen_methion
2.519616365
vioscreen_mfa141
0.09556164699999999
vioscreen_mfa161
1.54627418
vioscreen_mfa181
34.24058219
vioscreen_mfa201
0.5288767360000001
vioscreen_mfa221
0.248931509
vioscreen_mfatot
37.03804045
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.92720195
vioscreen_nccglbr
164.1221104
vioscreen_nccglgr
114.8075449
vioscreen_niacin
27.40367081
vioscreen_niacineq
47.16004923
vioscreen_nitrogen
18.38503987
vioscreen_non_fried_fish_servings
5.78673
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.2440003280000003
vioscreen_oxalic
291.94865150000004
vioscreen_oxalicm
262.52889550000003
vioscreen_pantothe
6.751561831
vioscreen_pectins
4.68454824
vioscreen_pfa182
15.81120238
vioscreen_pfa183
1.40690433
vioscreen_pfa184
0.059232874000000005
vioscreen_pfa204
0.202630134
vioscreen_pfa205
0.21942471
vioscreen_pfa225
0.08613699300000001
vioscreen_pfa226
0.473178101
vioscreen_pfatot
18.39348245
vioscreen_phenylal
4.993340646
vioscreen_phosphor
1747.3486300000002
vioscreen_phytic
1271.0386130000002
vioscreen_pinitol
0.08893150400000001
vioscreen_potass
3538.550342
vioscreen_procdate
10/28/15
vioscreen_proline
6.351751792999999
vioscreen_protanim
67.73465325
vioscreen_protein
112.3264555
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
44.58182256
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
113.0
vioscreen_retinol
314.70552230000004
vioscreen_rgrain
2.974191995
vioscreen_ribofla
1.9544657669999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.32863
vioscreen_satoco
2.282411006
vioscreen_selenium
167.0390411
vioscreen_serine
5.409590379
vioscreen_sfa100
0.32389041399999996
vioscreen_sfa120
0.7402190740000001
vioscreen_sfa140
1.832849456
vioscreen_sfa160
14.55473967
vioscreen_sfa170
0.115945194
vioscreen_sfa180
5.668850332000001
vioscreen_sfa200
0.224137001
vioscreen_sfa220
0.35208226
vioscreen_sfa40
0.36005479
vioscreen_sfa60
0.18013698600000003
vioscreen_sfa80
0.170958887
vioscreen_sfatot
25.01967573
vioscreen_sodium
3801.6431509999998
vioscreen_sorbitol
0.735068376
vioscreen_srvid
20640.0
vioscreen_starch
91.74785959
vioscreen_started
9/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.0010167
vioscreen_sweet_servings
0.56604
vioscreen_tagatose
5.124739472
vioscreen_tfa161t
0.052054805
vioscreen_tfa181t
1.46843847
vioscreen_tfa182t
0.30202739100000003
vioscreen_tgrain
6.452135729
vioscreen_thiamin
1.451698115
vioscreen_threonin
4.362438129
vioscreen_time
26.0
vioscreen_totaltfa
1.912575249
vioscreen_totcla
0.09139726199999999
vioscreen_totfolat
403.05261129999997
vioscreen_totsugar
106.9511665
vioscreen_tryptoph
1.185863171
vioscreen_tyrosine
3.8507401139999997
vioscreen_user_id
20640.0
vioscreen_v_drkgr
0.219178082
vioscreen_v_orange
0.288082175
vioscreen_v_other
0.742876779
vioscreen_v_potato
0.022547944
vioscreen_v_starcy
0.05153425
vioscreen_v_tomato
0.274273974
vioscreen_v_total
1.5985480319999998
vioscreen_valine
5.803151755
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
3.2
vioscreen_visit
1.0
vioscreen_vita_iu
13013.5589
vioscreen_vita_rae
912.9777397
vioscreen_vita_re
1511.248801
vioscreen_vitb12
6.519041631
vioscreen_vitb6
2.444192129
vioscreen_vitc
138.2654217
vioscreen_vitd
11.03517765
vioscreen_vitd2
0.17276713800000001
vioscreen_vitd3
10.86241037
vioscreen_vitd_iu
441.4071062
vioscreen_vite_iu
20.07024427
vioscreen_vitk
161.7321918
vioscreen_water
2693.796233
vioscreen_weight
Not provided
vioscreen_wgrain
3.477917648
vioscreen_whole_grain_servings
2.67951
vioscreen_xylitol
0.032410967
vioscreen_zinc
14.81230335
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)