American Gut Project; 10317.000029409
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634029
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029409
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29409
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
Self-diagnosed
autoimmune
I do not have this condition
birth year
1957.0
bmi
20.9
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Not provided
collection date
07/02/2015
collection month
July
collection season
Summer
collection time
08:30
collection_timestamp
2015-07-02 08:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
Germany
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
73.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
325fedb3f692d019fa1824b885c4df26b149a99d249bc314c939e21a0004ca3b2b8049c7ad8f7ae417033fda22f54c05d4f3cfd9d3458413d1e178d0484024b9
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.9
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Not provided
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029409
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
022bbea35aab0d1a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.34090411
vioscreen_a_cal
42.54227312
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.354054741
vioscreen_addsugar
39.77388699
vioscreen_adsugtot
35.17460135
vioscreen_age
215.0
vioscreen_alanine
3.88630137
vioscreen_alcohol
5.333890398
vioscreen_alcohol_servings
0.3409
vioscreen_alphacar
4728.036644
vioscreen_alphtoce
14.69000027
vioscreen_alphtoco
13.750655499999999
vioscreen_arginine
4.8104940339999995
vioscreen_ash
24.67265357
vioscreen_aspartam
0.0
vioscreen_aspartic
8.192137334
vioscreen_avcarb
200.8982021
vioscreen_bcodeid
Not provided
vioscreen_betacar
20462.73425
vioscreen_betacryp
314.7672945
vioscreen_betaine
227.82099739999998
vioscreen_betatoco
0.40008214700000005
vioscreen_biochana
0.016602738
vioscreen_bmi
Not provided
vioscreen_caffeine
322.7629923
vioscreen_calcium
true
vioscreen_calcium_avg
35.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
2.83233
vioscreen_calcium_servings
4.78107
vioscreen_calories
1935.410445
vioscreen_carbo
238.4797517
vioscreen_cholest
257.14272259999996
vioscreen_choline
461.77482879999997
vioscreen_clac9t11
0.10153425
vioscreen_clat10c12
0.021068495
vioscreen_copper
2.106247157
vioscreen_coumest
0.087999997
vioscreen_cystine
1.055616405
vioscreen_d_cheese
0.31561643
vioscreen_d_milk
2.117177968
vioscreen_d_tot_soym
2.8323289010000003
vioscreen_d_total
2.8323289010000003
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.537315097
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.100301413
vioscreen_discfat_oil
22.183698100000004
vioscreen_discfat_sol
30.80594499
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00060274
vioscreen_f_citmlb
1.2905753359999999
vioscreen_f_nj_citmlb
1.2866027
vioscreen_f_nj_other
1.017917748
vioscreen_f_nj_total
2.3045204480000003
vioscreen_f_other
1.017917748
vioscreen_f_total
2.30846566
vioscreen_fat
73.70392765
vioscreen_fiber
37.58145334
vioscreen_fibh2o
9.434930169
vioscreen_fibinso
28.36084386
vioscreen_finished
6/24/15
vioscreen_fish_servings
1.46635
vioscreen_fol_deqv
551.0529538
vioscreen_fol_nat
510.7802226
vioscreen_fol_syn
23.67684878
vioscreen_formontn
0.009123286999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.6
vioscreen_fructose
22.57599797
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.8670137590000001
vioscreen_g_total
4.035616773
vioscreen_g_whl
3.168575423
vioscreen_galactos
0.7123013429999999
vioscreen_gammtoco
7.6775892279999995
vioscreen_gender
false
vioscreen_genistn
0.586136993
vioscreen_glac
83.90092573
vioscreen_gltc
96.93678296
vioscreen_glucose
20.81372672
vioscreen_glutamic
16.65147956
vioscreen_glycine
3.4176985230000003
vioscreen_glycitn
0.191835607
vioscreen_grams
3626.215068
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
18.3
vioscreen_hei2010_fatty_acids
4.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.6
vioscreen_hei_sat_fat
5.5
vioscreen_hei_score
82.6
vioscreen_hei_sodium
1.5
vioscreen_hei_sol_fat_alc_add_sug
17.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.281753164
vioscreen_inositol
0.159726025
vioscreen_iron
13.42638592
vioscreen_isoleuc
3.8069590110000004
vioscreen_isomalt
0.0
vioscreen_joules
8097.759589
vioscreen_juice_servings
0.00795
vioscreen_lactitol
0.0
vioscreen_lactose
32.16312072
vioscreen_legumes
0.08290411
vioscreen_leucine
6.586576279
vioscreen_line_gi
526.1258134
vioscreen_low_fat_dairy_serving
0.48521000000000003
vioscreen_lutzeax
14908.894519999998
vioscreen_lycopene
5012.442808
vioscreen_lysine
5.787862532
vioscreen_m_egg
0.511041093
vioscreen_m_fish_hi
0.65238359
vioscreen_m_fish_lo
0.183205487
vioscreen_m_frank
0.295835605
vioscreen_m_meat
1.048000137
vioscreen_m_mpf
2.936849516
vioscreen_m_nutsd
2.186712396
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.5995068689999999
vioscreen_m_soy
0.002109589
vioscreen_magnes
559.1641267000001
vioscreen_maltitol
0.0
vioscreen_maltose
3.878684851
vioscreen_mangan
6.712302012
vioscreen_mannitol
0.651698491
vioscreen_methhis3
10.03539705
vioscreen_methion
1.854219118
vioscreen_mfa141
0.139315075
vioscreen_mfa161
1.0250959000000002
vioscreen_mfa181
26.94788902
vioscreen_mfa201
0.42706850700000004
vioscreen_mfa221
0.13038356199999998
vioscreen_mfatot
28.85296715
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.750655499999999
vioscreen_nccglbr
146.2312928
vioscreen_nccglgr
102.2714683
vioscreen_niacin
25.40649347
vioscreen_niacineq
41.46895602
vioscreen_nitrogen
14.59139822
vioscreen_non_fried_fish_servings
1.46635
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6563289280000002
vioscreen_oxalic
551.0646404
vioscreen_oxalicm
567.0063356
vioscreen_pantothe
7.382026568
vioscreen_pectins
7.907230576
vioscreen_pfa182
12.06591529
vioscreen_pfa183
1.305233138
vioscreen_pfa184
0.028027396
vioscreen_pfa204
0.116109592
vioscreen_pfa205
0.09095890599999999
vioscreen_pfa225
0.039808218
vioscreen_pfa226
0.192739722
vioscreen_pfatot
13.93449674
vioscreen_phenylal
3.908082727
vioscreen_phosphor
1723.343493
vioscreen_phytic
898.4963185
vioscreen_pinitol
0.004904109
vioscreen_potass
4799.678767
vioscreen_procdate
10/28/15
vioscreen_proline
5.598492682000001
vioscreen_protanim
50.41970248
vioscreen_protein
89.26723031
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.84303831
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
368.0
vioscreen_retinol
729.9186643999999
vioscreen_rgrain
1.136821841
vioscreen_ribofla
2.75336981
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.51923
vioscreen_satoco
0.0
vioscreen_selenium
122.41381640000002
vioscreen_serine
4.267589161
vioscreen_sfa100
0.566684921
vioscreen_sfa120
1.175890444
vioscreen_sfa140
2.3332330569999997
vioscreen_sfa160
12.91745238
vioscreen_sfa170
0.12816438
vioscreen_sfa180
5.242246361
vioscreen_sfa200
0.235972574
vioscreen_sfa220
0.377342454
vioscreen_sfa40
0.6640273839999999
vioscreen_sfa60
0.361726024
vioscreen_sfa80
0.307999995
vioscreen_sfatot
24.83032695
vioscreen_sodium
3552.8890409999995
vioscreen_sorbitol
0.82183562
vioscreen_srvid
19965.0
vioscreen_starch
55.90149294
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.2689908
vioscreen_sweet_servings
0.21181999999999998
vioscreen_tagatose
3.623862907
vioscreen_tfa161t
0.034739727000000005
vioscreen_tfa181t
1.638466195
vioscreen_tfa182t
0.254274008
vioscreen_tgrain
3.9659999060000004
vioscreen_thiamin
1.5765481190000001
vioscreen_threonin
3.3665480519999997
vioscreen_time
45.0
vioscreen_totaltfa
2.069150993
vioscreen_totcla
0.122712331
vioscreen_totfolat
534.4569349
vioscreen_totsugar
127.39765630000001
vioscreen_tryptoph
0.964986221
vioscreen_tyrosine
3.129863415
vioscreen_user_id
19965.0
vioscreen_v_drkgr
1.323479556
vioscreen_v_orange
0.963808326
vioscreen_v_other
1.312575416
vioscreen_v_potato
0.107890424
vioscreen_v_starcy
0.266301362
vioscreen_v_tomato
0.6480273520000001
vioscreen_v_total
4.622137535
vioscreen_valine
4.5697539869999995
vioscreen_veg5_day
8.6
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
40740.25753
vioscreen_vita_rae
2645.265411
vioscreen_vita_re
4560.610274000001
vioscreen_vitb12
7.2163012360000005
vioscreen_vitb6
2.306575409
vioscreen_vitc
245.5214683
vioscreen_vitd
10.26175353
vioscreen_vitd2
0.000438356
vioscreen_vitd3
10.26128732
vioscreen_vitd_iu
410.4701413
vioscreen_vite_iu
20.49391722
vioscreen_vitk
622.1638271
vioscreen_water
3201.8938359999997
vioscreen_weight
Not provided
vioscreen_wgrain
2.8292052389999998
vioscreen_whole_grain_servings
3.16858
vioscreen_xylitol
0.053315075999999996
vioscreen_zinc
13.00427413
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
53.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)