American Gut Project; 10317.000031457
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634313
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031457
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031457
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
16.14
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-30
collection month
July
collection season
Summer
collection time
09:30
collection_timestamp
2015-07-30 09:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
4.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
71ad54d05591bd5671ac5dc32f07aaf8bef7f54b91aca9d25119d36c426057bd62e9cab45a25742c1b120d9f6685a535599da1777beb8e0e92dca8d34376dd51
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
34.0
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-118.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031457
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
1e7f7fca6e45a003
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.681561656
vioscreen_a_cal
82.93473887
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.9127122019999998
vioscreen_addsugar
12.92874037
vioscreen_adsugtot
10.97167099
vioscreen_age
215.0
vioscreen_alanine
1.415643896
vioscreen_alcohol
10.35413701
vioscreen_alcohol_servings
0.68156
vioscreen_alphacar
1329.074658
vioscreen_alphtoce
11.12947881
vioscreen_alphtoco
10.84452122
vioscreen_arginine
1.8114246109999999
vioscreen_ash
18.55597175
vioscreen_aspartam
0.0
vioscreen_aspartic
2.724191828
vioscreen_avcarb
94.51237158
vioscreen_bcodeid
Not provided
vioscreen_betacar
16096.49726
vioscreen_betacryp
222.36168659999998
vioscreen_betaine
366.296661
vioscreen_betatoco
0.150410974
vioscreen_biochana
0.034109588999999996
vioscreen_bmi
Not provided
vioscreen_caffeine
236.6702483
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.00318
vioscreen_calcium_servings
1.9111
vioscreen_calories
845.5064212000001
vioscreen_carbo
121.0281143
vioscreen_cholest
19.02219205
vioscreen_choline
173.9995184
vioscreen_clac9t11
0.003863014
vioscreen_clat10c12
0.000410959
vioscreen_copper
1.2759727159999998
vioscreen_coumest
0.18219178100000002
vioscreen_cystine
0.414986305
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.003178082
vioscreen_d_tot_soym
0.003178082
vioscreen_d_total
0.003178082
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.22260274
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.312465783
vioscreen_discfat_oil
14.02402611
vioscreen_discfat_sol
5.352876846
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.716547885
vioscreen_f_nj_citmlb
0.71526021
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.71526021
vioscreen_f_other
0.0
vioscreen_f_total
0.716547885
vioscreen_fat
20.80566941
vioscreen_fiber
26.51879281
vioscreen_fibh2o
8.485670618
vioscreen_fibinso
18.11235686
vioscreen_finished
7/29/15
vioscreen_fish_servings
1.75865
vioscreen_fol_deqv
396.3485445
vioscreen_fol_nat
354.24552650000004
vioscreen_fol_syn
24.7551798
vioscreen_formontn
0.0052602740000000005
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.4
vioscreen_fructose
11.89715058
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.670109663
vioscreen_g_total
4.907150645
vioscreen_g_whl
3.237041149
vioscreen_galactos
0.052712327999999996
vioscreen_gammtoco
2.22739726
vioscreen_gender
false
vioscreen_genistn
0.124493147
vioscreen_glac
45.01309932
vioscreen_gltc
52.52257599
vioscreen_glucose
11.42235659
vioscreen_glutamic
6.1151514339999995
vioscreen_glycine
1.337040982
vioscreen_glycitn
0.013452054
vioscreen_grams
2635.683733
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.7
vioscreen_hei2010_refined_grains
9.3
vioscreen_hei2010_score
77.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
5.4
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
75.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
0.643698622
vioscreen_inositol
0.065534252
vioscreen_iron
10.75189025
vioscreen_isoleuc
1.1510411090000001
vioscreen_isomalt
0.0
vioscreen_joules
3537.596918
vioscreen_juice_servings
0.00255
vioscreen_lactitol
0.0
vioscreen_lactose
0.045917809000000004
vioscreen_legumes
0.029917807999999997
vioscreen_leucine
1.903890364
vioscreen_line_gi
252.18071490000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
26242.86301
vioscreen_lycopene
11406.948629999999
vioscreen_lysine
1.6429863080000002
vioscreen_m_egg
0.008356164000000001
vioscreen_m_fish_hi
0.256821912
vioscreen_m_fish_lo
0.7453698559999999
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.0021917470000001
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.004219178
vioscreen_magnes
368.6232021
vioscreen_maltitol
0.0
vioscreen_maltose
3.5517260410000002
vioscreen_mangan
4.317205894
vioscreen_mannitol
0.246383562
vioscreen_methhis3
3.236712396
vioscreen_methion
0.518684952
vioscreen_mfa141
0.0009589039999999999
vioscreen_mfa161
0.188356143
vioscreen_mfa181
10.19605562
vioscreen_mfa201
0.10994519800000001
vioscreen_mfa221
0.001753425
vioscreen_mfatot
10.52567155
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.84452122
vioscreen_nccglbr
82.30117188
vioscreen_nccglgr
57.56805972
vioscreen_niacin
12.08183594
vioscreen_niacineq
19.04120559
vioscreen_nitrogen
6.107342278
vioscreen_non_fried_fish_servings
1.75865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.131835603
vioscreen_oxalic
1304.508219
vioscreen_oxalicm
1355.4821060000002
vioscreen_pantothe
4.007178069
vioscreen_pectins
4.530328954
vioscreen_pfa182
3.88745251
vioscreen_pfa183
1.042712319
vioscreen_pfa184
0.00279452
vioscreen_pfa204
0.01
vioscreen_pfa205
0.023479454
vioscreen_pfa225
0.006931507
vioscreen_pfa226
0.05608219
vioscreen_pfatot
5.057890424
vioscreen_phenylal
1.283013665
vioscreen_phosphor
584.7598459
vioscreen_phytic
488.0521404
vioscreen_pinitol
0.000520548
vioscreen_potass
2786.010788
vioscreen_procdate
10/28/15
vioscreen_proline
1.7660274980000001
vioscreen_protanim
7.108191754
vioscreen_protein
36.94180758
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.83416363
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
252.0
vioscreen_retinol
9.266739351
vioscreen_rgrain
2.0543286469999997
vioscreen_ribofla
1.37306853
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.654
vioscreen_satoco
0.0
vioscreen_selenium
73.27925407
vioscreen_serine
1.250630167
vioscreen_sfa100
0.011561645
vioscreen_sfa120
0.009369863
vioscreen_sfa140
0.035260274
vioscreen_sfa160
2.518356031
vioscreen_sfa170
0.011561643
vioscreen_sfa180
0.605397222
vioscreen_sfa200
0.07183562
vioscreen_sfa220
0.037424655
vioscreen_sfa40
0.002986301
vioscreen_sfa60
0.000739726
vioscreen_sfa80
0.010712328
vioscreen_sfatot
3.335178323
vioscreen_sodium
2987.468836
vioscreen_sorbitol
0.017342466
vioscreen_srvid
20267.0
vioscreen_starch
47.59819135
vioscreen_started
7/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.692684477
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.00309589
vioscreen_tfa181t
0.47484929299999995
vioscreen_tfa182t
0.103424647
vioscreen_tgrain
4.540301263
vioscreen_thiamin
1.052767317
vioscreen_threonin
1.145808223
vioscreen_time
9.0
vioscreen_totaltfa
0.7771507790000001
vioscreen_totcla
0.0047945209999999995
vioscreen_totfolat
379.0007705
vioscreen_totsugar
36.72690229
vioscreen_tryptoph
0.41873975799999996
vioscreen_tyrosine
0.9475068390000001
vioscreen_user_id
20267.0
vioscreen_v_drkgr
1.576931554
vioscreen_v_orange
0.24454793
vioscreen_v_other
0.641534257
vioscreen_v_potato
0.18750685600000003
vioscreen_v_starcy
0.04769863
vioscreen_v_tomato
0.739205473
vioscreen_v_total
3.4374247510000004
vioscreen_valine
1.3648493519999998
vioscreen_veg5_day
6.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
28151.04932
vioscreen_vita_rae
1415.285103
vioscreen_vita_re
2821.303253
vioscreen_vitb12
0.60279449
vioscreen_vitb6
1.088767107
vioscreen_vitc
128.7763592
vioscreen_vitd
1.87580834
vioscreen_vitd2
0.0
vioscreen_vitd3
1.87580834
vioscreen_vitd_iu
75.03233358
vioscreen_vite_iu
16.14633053
vioscreen_vitk
933.2137842
vioscreen_water
2434.233562
vioscreen_weight
Not provided
vioscreen_wgrain
2.4860272969999997
vioscreen_whole_grain_servings
3.2370400000000004
vioscreen_xylitol
0.02547945
vioscreen_zinc
4.459040895
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
45.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily