American Gut Project; 10317.000029298
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634009
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:13Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029298
acid_reflux
Not provided
acne medication
false
acne_medication_otc
Not provided
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
true
allergic_to_shellfish
true
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29298
antibiotic_history
Month
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1952.0
bmi
23.6
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-29
collection month
June
collection season
Summer
collection time
10:10
collection_timestamp
2015-06-29 10:10
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
123.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Not provided
exercise_location
None of the above
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Not provided
geo loc name
United Kingdom
gluten
Not provided
has_physical_specimen
true
height cm
149.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
9d3214ed43b2b1051225f499609a5362931eb7adf96ef5bc32c12788e93af1c86a4f48215ccad19aac48b48a84be2300963718ab92cc4dc79aae90376121ee53
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
Not provided
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.9
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
-0.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029298
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
Less than 5 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Not provided
sugary_sweets_frequency
Never
survey_id
4de8bf258f8edd91
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Not provided
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.445150673
vioscreen_addsugar
3.114191594
vioscreen_adsugtot
2.531643802
vioscreen_age
215.0
vioscreen_alanine
3.45537009
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
155.1287457
vioscreen_alphtoce
5.491342372
vioscreen_alphtoco
4.538493283999999
vioscreen_arginine
4.16441132
vioscreen_ash
18.15600118
vioscreen_aspartam
0.0
vioscreen_aspartic
6.200629415
vioscreen_avcarb
155.0260702
vioscreen_bcodeid
Not provided
vioscreen_betacar
4172.1753420000005
vioscreen_betacryp
212.10389550000002
vioscreen_betaine
14.8831242
vioscreen_betatoco
0.095068485
vioscreen_biochana
0.026465752999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
426.1102312
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.44364
vioscreen_calcium_servings
1.41962
vioscreen_calories
1247.9248289999998
vioscreen_carbo
181.30869009999998
vioscreen_cholest
252.94409249999998
vioscreen_choline
344.32949489999993
vioscreen_clac9t11
0.032520547999999996
vioscreen_clat10c12
0.006520548
vioscreen_copper
1.709781009
vioscreen_coumest
0.323589043
vioscreen_cystine
0.789315002
vioscreen_d_cheese
0.408849345
vioscreen_d_milk
0.034438355
vioscreen_d_tot_soym
0.44364385700000003
vioscreen_d_total
0.44364385700000003
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.35126029200000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.516794534
vioscreen_discfat_oil
10.62364418
vioscreen_discfat_sol
10.987096000000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.01090411
vioscreen_f_citmlb
1.7244384769999999
vioscreen_f_nj_citmlb
1.714301457
vioscreen_f_nj_other
1.437123254
vioscreen_f_nj_total
3.151424711
vioscreen_f_other
1.437123254
vioscreen_f_total
3.161588988
vioscreen_fat
33.94624625
vioscreen_fiber
26.28605522
vioscreen_fibh2o
8.924329115
vioscreen_fibinso
17.65731619
vioscreen_finished
6/28/15
vioscreen_fish_servings
2.54192
vioscreen_fol_deqv
389.79306510000004
vioscreen_fol_nat
280.62951630000003
vioscreen_fol_syn
64.23690604
vioscreen_formontn
0.009013699
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.0
vioscreen_frtsumm
6.3
vioscreen_fructose
24.7153414
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
3.1531507519999997
vioscreen_g_total
3.1531507519999997
vioscreen_g_whl
0.0
vioscreen_galactos
0.274410948
vioscreen_gammtoco
9.02435587
vioscreen_gender
false
vioscreen_genistn
0.137780824
vioscreen_glac
84.00405608
vioscreen_gltc
91.8323095
vioscreen_glucose
23.13421982
vioscreen_glutamic
10.1858365
vioscreen_glycine
2.8109863280000003
vioscreen_glycitn
0.000246575
vioscreen_grams
2316.852911
vioscreen_hei2010_dairy
2.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
5.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
0.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
59.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
0.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.1
vioscreen_hei_sat_fat
9.6
vioscreen_hei_score
68.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.7677809619999998
vioscreen_inositol
0.223041085
vioscreen_iron
11.68397501
vioscreen_isoleuc
2.877807952
vioscreen_isomalt
0.0
vioscreen_joules
5221.315068
vioscreen_juice_servings
0.02027
vioscreen_lactitol
0.0
vioscreen_lactose
0.7619725890000001
vioscreen_legumes
0.0
vioscreen_leucine
4.861342506000001
vioscreen_line_gi
494.61344180000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4754.726712
vioscreen_lycopene
5325.866781000001
vioscreen_lysine
4.674137147
vioscreen_m_egg
0.585780815
vioscreen_m_fish_hi
0.36224657899999996
vioscreen_m_fish_lo
1.086739736
vioscreen_m_frank
0.0
vioscreen_m_meat
1.277726014
vioscreen_m_mpf
4.103725987
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.315835613
vioscreen_m_poult
1.061589071
vioscreen_m_soy
0.0
vioscreen_magnes
233.53065069999997
vioscreen_maltitol
0.0
vioscreen_maltose
0.645890411
vioscreen_mangan
2.809972643
vioscreen_mannitol
0.122328771
vioscreen_methhis3
10.68956148
vioscreen_methion
1.535808239
vioscreen_mfa141
0.056986299000000004
vioscreen_mfa161
0.607890424
vioscreen_mfa181
9.971342573
vioscreen_mfa201
0.073452053
vioscreen_mfa221
0.017561643000000002
vioscreen_mfatot
10.79125977
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
4.538493283999999
vioscreen_nccglbr
131.0226563
vioscreen_nccglgr
91.64257277
vioscreen_niacin
22.55498448
vioscreen_niacineq
33.50479452
vioscreen_nitrogen
10.48197239
vioscreen_non_fried_fish_servings
2.54192
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.184191727
vioscreen_oxalic
56.59174872
vioscreen_oxalicm
85.33773009
vioscreen_pantothe
6.958493418
vioscreen_pectins
4.647205426
vioscreen_pfa182
7.292492509
vioscreen_pfa183
1.0282739090000002
vioscreen_pfa184
0.005534247
vioscreen_pfa204
0.152931496
vioscreen_pfa205
0.023616437999999997
vioscreen_pfa225
0.017452053999999998
vioscreen_pfa226
0.11024658
vioscreen_pfatot
8.719836259
vioscreen_phenylal
2.703808092
vioscreen_phosphor
876.6068492999999
vioscreen_phytic
466.1638699
vioscreen_pinitol
0.0
vioscreen_potass
2713.881849
vioscreen_procdate
10/28/15
vioscreen_proline
3.096575342
vioscreen_protanim
42.15317851
vioscreen_protein
65.20098459
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.04865422
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
353.0
vioscreen_retinol
732.8754281
vioscreen_rgrain
3.120328888
vioscreen_ribofla
2.016356084
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.1026
vioscreen_satoco
0.0
vioscreen_selenium
98.27161815
vioscreen_serine
2.820356312
vioscreen_sfa100
0.18936987100000002
vioscreen_sfa120
0.20397259399999998
vioscreen_sfa140
0.899479445
vioscreen_sfa160
6.197862933
vioscreen_sfa170
0.043315067
vioscreen_sfa180
2.3205205209999997
vioscreen_sfa200
0.045671233
vioscreen_sfa220
0.041506848
vioscreen_sfa40
0.220328783
vioscreen_sfa60
0.119863014
vioscreen_sfa80
0.079506845
vioscreen_sfatot
10.52808219
vioscreen_sodium
3591.446575
vioscreen_sorbitol
1.069287778
vioscreen_srvid
19997.0
vioscreen_starch
66.26545912
vioscreen_started
6/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.56213613
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.039753422999999996
vioscreen_tfa161t
0.030630137999999998
vioscreen_tfa181t
0.49701370899999997
vioscreen_tfa182t
0.11079452699999999
vioscreen_tgrain
3.120328888
vioscreen_thiamin
1.369972543
vioscreen_threonin
2.577233051
vioscreen_time
23.0
vioscreen_totaltfa
0.645260286
vioscreen_totcla
0.039643836
vioscreen_totfolat
344.8663313
vioscreen_totsugar
70.48674551
vioscreen_tryptoph
0.6585479320000001
vioscreen_tyrosine
2.079753385
vioscreen_user_id
19997.0
vioscreen_v_drkgr
0.0
vioscreen_v_orange
0.0
vioscreen_v_other
1.258383555
vioscreen_v_potato
0.0
vioscreen_v_starcy
1.011589071
vioscreen_v_tomato
0.019013699
vioscreen_v_total
2.288986248
vioscreen_valine
3.326876538
vioscreen_veg5_day
4.6
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
9702.941095999999
vioscreen_vita_rae
1095.858305
vioscreen_vita_re
1458.840411
vioscreen_vitb12
6.459425166
vioscreen_vitb6
1.5444658669999998
vioscreen_vitc
123.6514555
vioscreen_vitd
3.73600004
vioscreen_vitd2
0.004356164
vioscreen_vitd3
3.731643635
vioscreen_vitd_iu
149.4400016
vioscreen_vite_iu
6.715095917
vioscreen_vitk
152.0185895
vioscreen_water
2031.9602739999998
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.019123286
vioscreen_zinc
8.078246736
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
53.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Not provided
whole_grain_frequency
Never