American Gut Project; 10317.000029509
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633735
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029509
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
30.0
age_corrected
30.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29509
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1985.0
bmi
19.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/09/2015
collection month
July
collection season
Summer
collection time
22:00
collection_timestamp
2015-07-09 22:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
151.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
188.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
212f181c822b8a3fc7a993d9f2908dae0b2f552efe818eb8a739743b5bbd4bb88bda6c9556917872e4a31419e3e62d21073d73f2181cd7242c0b7977702ef00e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
53.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029509
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
42e302c16e077a8a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.08723295
vioscreen_a_cal
135.3576199
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.923150551
vioscreen_addsugar
8.366767444
vioscreen_adsugtot
7.889178885
vioscreen_age
215.0
vioscreen_alanine
5.125233103999999
vioscreen_alcohol
16.07646618
vioscreen_alcohol_servings
1.08723
vioscreen_alphacar
494.6578767
vioscreen_alphtoce
6.313807657000001
vioscreen_alphtoco
5.591424979
vioscreen_arginine
5.486466247999999
vioscreen_ash
15.30695767
vioscreen_aspartam
0.0
vioscreen_aspartic
9.091562098999999
vioscreen_avcarb
87.69520013
vioscreen_bcodeid
Not provided
vioscreen_betacar
2786.084589
vioscreen_betacryp
22.847891699999998
vioscreen_betaine
85.44497539
vioscreen_betatoco
0.135041088
vioscreen_biochana
0.006136986
vioscreen_bmi
Not provided
vioscreen_caffeine
48.17518194
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.46652
vioscreen_calcium_servings
2.31219
vioscreen_calories
1351.88339
vioscreen_carbo
95.85223673
vioscreen_cholest
659.0164384
vioscreen_choline
666.4930651000001
vioscreen_clac9t11
0.075917811
vioscreen_clat10c12
0.0140274
vioscreen_copper
0.809999983
vioscreen_coumest
0.0940548
vioscreen_cystine
1.278547982
vioscreen_d_cheese
0.151506847
vioscreen_d_milk
1.290301346
vioscreen_d_tot_soym
1.466520628
vioscreen_d_total
1.466520628
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.09726027400000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.730794327
vioscreen_discfat_oil
7.096163982
vioscreen_discfat_sol
28.93364191
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00030137
vioscreen_f_citmlb
0.09367122900000001
vioscreen_f_nj_citmlb
0.082383561
vioscreen_f_nj_other
0.31427397
vioscreen_f_nj_total
0.396657531
vioscreen_f_other
0.31427397
vioscreen_f_total
0.407945231
vioscreen_fat
51.93733412
vioscreen_fiber
8.15608278
vioscreen_fibh2o
2.308383555
vioscreen_fibinso
5.858684717
vioscreen_finished
7/2/15
vioscreen_fish_servings
7.18808
vioscreen_fol_deqv
247.46162239999998
vioscreen_fol_nat
152.48736090000003
vioscreen_fol_syn
55.85512628
vioscreen_formontn
0.000356164
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.05114
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.8
vioscreen_fructose
5.85405541
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.071178029
vioscreen_g_total
2.471643903
vioscreen_g_whl
0.400493131
vioscreen_galactos
0.153698636
vioscreen_gammtoco
6.512437793999999
vioscreen_gender
false
vioscreen_genistn
0.055452054
vioscreen_glac
42.89819403
vioscreen_gltc
46.69383562
vioscreen_glucose
6.924356539
vioscreen_glutamic
16.56140036
vioscreen_glycine
4.166410932
vioscreen_glycitn
0.003780822
vioscreen_grams
2929.052397
vioscreen_hei2010_dairy
8.3
vioscreen_hei2010_empty_calories
17.7
vioscreen_hei2010_fatty_acids
2.6
vioscreen_hei2010_fruit
1.9
vioscreen_hei2010_greens_beans
0.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.0
vioscreen_hei2010_veg
3.4
vioscreen_hei2010_whole_fruit
3.7
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
1.5
vioscreen_hei_fruit
1.9
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.3
vioscreen_hei_non_juice_frt
3.7
vioscreen_hei_oils
4.4
vioscreen_hei_sat_fat
4.5
vioscreen_hei_score
56.3
vioscreen_hei_sodium
2.4
vioscreen_hei_sol_fat_alc_add_sug
12.2
vioscreen_hei_veg
3.4
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
2.70750699
vioscreen_inositol
0.072520551
vioscreen_iron
8.178438035
vioscreen_isoleuc
4.592630632
vioscreen_isomalt
0.0
vioscreen_joules
5656.279452000001
vioscreen_juice_servings
0.022580000000000003
vioscreen_lactitol
0.0
vioscreen_lactose
16.00665802
vioscreen_legumes
0.0
vioscreen_leucine
7.740987532
vioscreen_line_gi
226.0915026
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
1352.021062
vioscreen_lycopene
4156.693493
vioscreen_lysine
7.616028334
vioscreen_m_egg
2.3958629869999997
vioscreen_m_fish_hi
2.308493251
vioscreen_m_fish_lo
1.787835777
vioscreen_m_frank
0.29915067100000003
vioscreen_m_meat
1.55632876
vioscreen_m_mpf
7.6364659139999995
vioscreen_m_nutsd
0.11443835699999999
vioscreen_m_organ
0.0
vioscreen_m_poult
1.684712449
vioscreen_m_soy
0.000438356
vioscreen_magnes
217.92296659999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.0691506579999999
vioscreen_mangan
1.532822032
vioscreen_mannitol
0.255178081
vioscreen_methhis3
27.03322988
vioscreen_methion
2.59241124
vioscreen_mfa141
0.09972603199999999
vioscreen_mfa161
1.238410929
vioscreen_mfa181
16.42454784
vioscreen_mfa201
0.42295891700000005
vioscreen_mfa221
0.365452011
vioscreen_mfatot
18.72868686
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.591424979
vioscreen_nccglbr
61.97768087
vioscreen_nccglgr
43.34994381
vioscreen_niacin
19.43890465
vioscreen_niacineq
37.51805169
vioscreen_nitrogen
15.38715085
vioscreen_non_fried_fish_servings
7.18808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.8375615369999998
vioscreen_oxalic
74.75080265
vioscreen_oxalicm
75.81825235
vioscreen_pantothe
5.60879341
vioscreen_pectins
1.197616368
vioscreen_pfa182
6.968273759
vioscreen_pfa183
0.647013792
vioscreen_pfa184
0.08520548
vioscreen_pfa204
0.330986295
vioscreen_pfa205
0.30928767
vioscreen_pfa225
0.121972594
vioscreen_pfa226
0.6753424659999999
vioscreen_pfatot
9.275535103
vioscreen_phenylal
4.193835616
vioscreen_phosphor
1282.9870720000001
vioscreen_phytic
246.09685359999997
vioscreen_pinitol
0.000876712
vioscreen_potass
2267.434418
vioscreen_procdate
10/28/15
vioscreen_proline
5.033863308
vioscreen_protanim
85.45912885
vioscreen_protein
95.83100385
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
10.3714516
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
332.0
vioscreen_retinol
474.6003853
vioscreen_rgrain
1.969424564
vioscreen_ribofla
1.945479218
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.72321
vioscreen_satoco
0.0
vioscreen_selenium
150.66911389999999
vioscreen_serine
4.599342493
vioscreen_sfa100
0.294821919
vioscreen_sfa120
0.37682189899999996
vioscreen_sfa140
1.4483288069999998
vioscreen_sfa160
10.4804935
vioscreen_sfa170
0.115123289
vioscreen_sfa180
4.449562219
vioscreen_sfa200
0.069205475
vioscreen_sfa220
0.053068495
vioscreen_sfa40
0.413287646
vioscreen_sfa60
0.211945207
vioscreen_sfa80
0.129095877
vioscreen_sfatot
18.26062848
vioscreen_sodium
2334.948116
vioscreen_sorbitol
0.310876716
vioscreen_srvid
20047.0
vioscreen_starch
38.89175674
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.041671126
vioscreen_sweet_servings
0.18082
vioscreen_tagatose
0.820739746
vioscreen_tfa161t
0.022520548999999997
vioscreen_tfa181t
1.352821914
vioscreen_tfa182t
0.210547962
vioscreen_tgrain
2.4559725830000003
vioscreen_thiamin
0.944438276
vioscreen_threonin
4.0799456869999995
vioscreen_time
18.0
vioscreen_totaltfa
1.59569861
vioscreen_totcla
0.09109589
vioscreen_totfolat
208.3424658
vioscreen_totsugar
37.88328607
vioscreen_tryptoph
1.0839452459999999
vioscreen_tyrosine
3.471918143
vioscreen_user_id
20047.0
vioscreen_v_drkgr
0.028520548
vioscreen_v_orange
0.131123289
vioscreen_v_other
0.200328754
vioscreen_v_potato
0.126136989
vioscreen_v_starcy
0.07528767
vioscreen_v_tomato
0.435013695
vioscreen_v_total
0.9964109659999999
vioscreen_valine
5.094437941
vioscreen_veg5_day
1.1
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.0
vioscreen_visit
1.0
vioscreen_vita_iu
6656.463014
vioscreen_vita_rae
728.3363870000001
vioscreen_vita_re
982.0747432000001
vioscreen_vitb12
7.8299998660000005
vioscreen_vitb6
1.680657708
vioscreen_vitc
30.48769799
vioscreen_vitd
17.83564319
vioscreen_vitd2
0.002082192
vioscreen_vitd3
17.8335884
vioscreen_vitd_iu
713.4257277
vioscreen_vite_iu
8.33062995
vioscreen_vitk
53.50786601
vioscreen_water
2675.546575
vioscreen_weight
Not provided
vioscreen_wgrain
0.486547935
vioscreen_whole_grain_servings
0.40049
vioscreen_xylitol
0.019835616
vioscreen_zinc
9.35263003
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never