American Gut Project; 10317.000031567
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634332
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031567
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031567
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
24.1
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
08:45
collection_timestamp
2015-09-09 08:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
39.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
193.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
2ad431ecd6a6e37e0da4e99e003f78e1b2dbef2517082a67f31da97136d1ea254e6fdb1fddb346a97df84e75f0dc77ef5683bfb0a8feafa27f78491daf15e51e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
37.4
level_of_education
Graduate or Professional degree
liver_disease
Diagnosed by a medical professional (doctor, physician assistant)
livingwith
Yes
longitude
-122.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031567
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
1efa3237af9d6f1a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0530137
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.099287644
vioscreen_addsugar
51.90569884
vioscreen_adsugtot
44.91851991
vioscreen_age
215.0
vioscreen_alanine
2.730958536
vioscreen_alcohol
0.824356205
vioscreen_alcohol_servings
0.05301
vioscreen_alphacar
2542.502911
vioscreen_alphtoce
14.54739806
vioscreen_alphtoco
13.3296166
vioscreen_arginine
4.233122525
vioscreen_ash
23.6403842
vioscreen_aspartam
0.0
vioscreen_aspartic
7.1970127889999995
vioscreen_avcarb
229.2668664
vioscreen_bcodeid
Not provided
vioscreen_betacar
16299.39589
vioscreen_betacryp
697.4066781
vioscreen_betaine
130.5573309
vioscreen_betatoco
0.48035621100000003
vioscreen_biochana
0.054438358
vioscreen_bmi
Not provided
vioscreen_caffeine
92.3442744
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.23803000000000002
vioscreen_calcium_servings
2.59795
vioscreen_calories
1702.5061640000001
vioscreen_carbo
279.6247432
vioscreen_cholest
26.77849422
vioscreen_choline
284.7607235
vioscreen_clac9t11
0.009534246
vioscreen_clat10c12
0.003589041
vioscreen_copper
2.4920547280000003
vioscreen_coumest
0.561260234
vioscreen_cystine
0.87753413
vioscreen_d_cheese
0.068712329
vioscreen_d_milk
0.16931507699999998
vioscreen_d_tot_soym
0.732383582
vioscreen_d_total
0.23802741100000002
vioscreen_d_yogurt
0.0
vioscreen_daidzein
11.77947613
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.440191567
vioscreen_discfat_oil
18.63756154
vioscreen_discfat_sol
9.292903869
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002849315
vioscreen_f_citmlb
0.8904932309999999
vioscreen_f_nj_citmlb
0.886602783
vioscreen_f_nj_other
1.08016441
vioscreen_f_nj_total
1.96676711
vioscreen_f_other
1.0836438320000001
vioscreen_f_total
1.97413698
vioscreen_fat
45.90726134
vioscreen_fiber
50.21637414
vioscreen_fibh2o
11.51128799
vioscreen_fibinso
38.674082299999995
vioscreen_finished
9/9/15
vioscreen_fish_servings
0.23269
vioscreen_fol_deqv
834.1522259999999
vioscreen_fol_nat
566.8910103
vioscreen_fol_syn
157.1999144
vioscreen_formontn
0.006958904
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.9
vioscreen_fructose
30.97210777
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.992356225
vioscreen_g_total
4.963890598
vioscreen_g_whl
3.9715342060000003
vioscreen_galactos
0.304876688
vioscreen_gammtoco
9.681644638
vioscreen_gender
false
vioscreen_genistn
14.01048935
vioscreen_glac
111.55827269999999
vioscreen_gltc
130.9950342
vioscreen_glucose
30.26161976
vioscreen_glutamic
12.41838346
vioscreen_glycine
2.703260448
vioscreen_glycitn
2.009068486
vioscreen_grams
3760.6297950000003
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.1
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
82.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.524191995
vioscreen_inositol
0.178849333
vioscreen_iron
24.13986515
vioscreen_isoleuc
2.498630304
vioscreen_isomalt
0.0
vioscreen_joules
7123.276027
vioscreen_juice_servings
0.014709999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
2.030630117
vioscreen_legumes
1.028602663
vioscreen_leucine
4.374547838
vioscreen_line_gi
648.3283818
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
7203.508904
vioscreen_lycopene
18432.4863
vioscreen_lysine
3.302821998
vioscreen_m_egg
0.01879452
vioscreen_m_fish_hi
0.070493149
vioscreen_m_fish_lo
0.06210958900000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.19128767
vioscreen_m_mpf
0.336109569
vioscreen_m_nutsd
2.385726134
vioscreen_m_organ
0.0
vioscreen_m_poult
0.012219178
vioscreen_m_soy
1.203671223
vioscreen_magnes
534.2811216
vioscreen_maltitol
0.0
vioscreen_maltose
6.7544386770000004
vioscreen_mangan
7.930792487000001
vioscreen_mannitol
0.666054754
vioscreen_methhis3
1.700630251
vioscreen_methion
0.874054875
vioscreen_mfa141
0.00279452
vioscreen_mfa161
0.314904116
vioscreen_mfa181
15.90665802
vioscreen_mfa201
0.242465753
vioscreen_mfa221
0.020520547
vioscreen_mfatot
16.77449567
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.30011103
vioscreen_nccglbr
176.5874786
vioscreen_nccglgr
123.52298799999998
vioscreen_niacin
20.63561778
vioscreen_niacineq
33.21923427
vioscreen_nitrogen
10.92556186
vioscreen_non_fried_fish_servings
0.23269
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.040027524
vioscreen_oxalic
466.60008560000006
vioscreen_oxalicm
430.3241438
vioscreen_pantothe
4.937205025
vioscreen_pectins
7.521424176
vioscreen_pfa182
11.16692998
vioscreen_pfa183
0.993178276
vioscreen_pfa184
0.003643835
vioscreen_pfa204
0.01169863
vioscreen_pfa205
0.016931506000000002
vioscreen_pfa225
0.0046575340000000005
vioscreen_pfa226
0.021671232000000002
vioscreen_pfatot
12.43772608
vioscreen_phenylal
2.945205145
vioscreen_phosphor
1312.7760269999999
vioscreen_phytic
1695.013014
vioscreen_pinitol
0.06958904
vioscreen_potass
4240.038699000001
vioscreen_procdate
10/28/15
vioscreen_proline
3.192739325
vioscreen_protanim
5.989863147
vioscreen_protein
65.48482449
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
59.49564426
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
97.0
vioscreen_retinol
170.32711899999998
vioscreen_rgrain
1.366493121
vioscreen_ribofla
1.5772056269999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.83225
vioscreen_satoco
0.064684933
vioscreen_selenium
84.10163741
vioscreen_serine
3.1369859669999998
vioscreen_sfa100
0.097424661
vioscreen_sfa120
0.14128767
vioscreen_sfa140
0.554849327
vioscreen_sfa160
7.004465432000001
vioscreen_sfa170
0.019178082
vioscreen_sfa180
3.54402725
vioscreen_sfa200
0.18457535
vioscreen_sfa220
0.34684929
vioscreen_sfa40
0.130493143
vioscreen_sfa60
0.041369864
vioscreen_sfa80
0.045260275
vioscreen_sfatot
12.35117856
vioscreen_sodium
4124.567808
vioscreen_sorbitol
1.287506856
vioscreen_srvid
20680.0
vioscreen_starch
100.87859590000001
vioscreen_started
9/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.93177975
vioscreen_sweet_servings
0.78356
vioscreen_tagatose
3.4773149880000003
vioscreen_tfa161t
0.010438355
vioscreen_tfa181t
0.31997262600000004
vioscreen_tfa182t
0.294794516
vioscreen_tgrain
5.401917674
vioscreen_thiamin
1.698959058
vioscreen_threonin
2.259917628
vioscreen_time
31.0
vioscreen_totaltfa
0.690301388
vioscreen_totcla
0.013808218999999998
vioscreen_totfolat
724.0902397000001
vioscreen_totsugar
108.3756742
vioscreen_tryptoph
0.753342469
vioscreen_tyrosine
1.853068647
vioscreen_user_id
20680.0
vioscreen_v_drkgr
1.304739673
vioscreen_v_orange
0.618301392
vioscreen_v_other
2.940191567
vioscreen_v_potato
0.065561645
vioscreen_v_starcy
0.06575343
vioscreen_v_tomato
0.894958831
vioscreen_v_total
5.8900818710000005
vioscreen_valine
2.9472876980000002
vioscreen_veg5_day
11.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
11.5
vioscreen_visit
1.0
vioscreen_vita_iu
30434.416439999997
vioscreen_vita_rae
1663.607877
vioscreen_vita_re
3156.886986
vioscreen_vitb12
1.594630077
vioscreen_vitb6
2.628438202
vioscreen_vitc
354.77551370000003
vioscreen_vitd
1.604849201
vioscreen_vitd2
0.436602741
vioscreen_vitd3
1.168246585
vioscreen_vitd_iu
64.19396805
vioscreen_vite_iu
19.89452055
vioscreen_vitk
376.7656678
vioscreen_water
3346.476712
vioscreen_weight
Not provided
vioscreen_wgrain
4.0354518939999995
vioscreen_whole_grain_servings
3.9715300000000004
vioscreen_xylitol
0.056219174000000004
vioscreen_zinc
14.97992027
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
89.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily