American Gut Project; 10317.000003236
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632818
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:26:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000003236
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000003236
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
22.66
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
12/01/2014
collection month
December
collection season
Winter
collection time
09:05
collection_timestamp
2014-12-01 09:05
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
149.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b5fbef1b6c1c74fd6c52c225ca2b44798d8cd02f335088c3ac281b4060d4c77c18d31fb98184dfcefd21d8daec030fcf095fe73f71a58ddbcfc65740932bae42
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
32.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-96.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000003236
sample type
Mouth
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5ce067ca1b729e88
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.379452055
vioscreen_a_cal
46.97665882
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.044630244
vioscreen_addsugar
42.89344767
vioscreen_adsugtot
36.06345248
vioscreen_age
214.0
vioscreen_alanine
4.411781625
vioscreen_alcohol
5.724465566
vioscreen_alcohol_servings
0.37945
vioscreen_alphacar
2923.314726
vioscreen_alphtoce
18.15766802
vioscreen_alphtoco
16.93224529
vioscreen_arginine
4.953315965
vioscreen_ash
26.00462864
vioscreen_aspartam
0.0
vioscreen_aspartic
7.981096827000001
vioscreen_avcarb
143.56763700000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
14432.3411
vioscreen_betacryp
132.1152611
vioscreen_betaine
91.75967466
vioscreen_betatoco
0.28263012600000004
vioscreen_biochana
0.005780822
vioscreen_bmi
Not provided
vioscreen_caffeine
32.95731485
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.03132
vioscreen_calcium_servings
3.15866
vioscreen_calories
3127.686986
vioscreen_carbo
163.70341399999998
vioscreen_cholest
908.2513698999999
vioscreen_choline
638.095976
vioscreen_clac9t11
0.742931544
vioscreen_clat10c12
0.15419175699999998
vioscreen_copper
1.6232878380000002
vioscreen_coumest
0.021397261
vioscreen_cystine
1.156685022
vioscreen_d_cheese
0.48652055299999997
vioscreen_d_milk
0.43780822799999997
vioscreen_d_tot_soym
1.031315132
vioscreen_d_total
1.031315132
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
0.23210957100000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.336356385
vioscreen_discfat_oil
42.18846319
vioscreen_discfat_sol
163.33314430000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.22882193
vioscreen_f_nj_citmlb
0.156684949
vioscreen_f_nj_other
0.599369875
vioscreen_f_nj_total
0.7560821120000001
vioscreen_f_other
0.995260327
vioscreen_f_total
1.224109556
vioscreen_fat
239.0258348
vioscreen_fiber
20.12490502
vioscreen_fibh2o
5.225999638999999
vioscreen_fibinso
14.93786521
vioscreen_finished
11/21/14
vioscreen_fish_servings
0.52423
vioscreen_fol_deqv
401.4714897
vioscreen_fol_nat
340.8256421
vioscreen_fol_syn
35.65649347
vioscreen_formontn
0.001041096
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
1.1
vioscreen_frtsumm
2.4
vioscreen_fructose
17.28490475
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.778054601
vioscreen_g_total
2.5093423919999998
vioscreen_g_whl
0.731342472
vioscreen_galactos
0.48745205
vioscreen_gammtoco
10.88471278
vioscreen_gender
false
vioscreen_genistn
0.276657543
vioscreen_glac
59.7104024
vioscreen_gltc
64.96838613
vioscreen_glucose
18.01032481
vioscreen_glutamic
14.61632732
vioscreen_glycine
3.724876257
vioscreen_glycitn
0.055041096
vioscreen_grams
4234.430479
vioscreen_hei2010_dairy
2.5
vioscreen_hei2010_empty_calories
0.0
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
2.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
38.9
vioscreen_hei2010_sea_foods_plant_protiens
1.9
vioscreen_hei2010_sodium
3.2
vioscreen_hei2010_veg
4.3
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
1.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.4
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.5
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
41.9
vioscreen_hei_sodium
2.6
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
4.3
vioscreen_hei_whl_grains
0.8
vioscreen_height
Not provided
vioscreen_histidin
2.44443861
vioscreen_inositol
0.12282192300000001
vioscreen_iron
11.54005378
vioscreen_isoleuc
4.054519946
vioscreen_isomalt
0.0
vioscreen_joules
13086.257529999999
vioscreen_juice_servings
0.9360299999999999
vioscreen_lactitol
0.0
vioscreen_lactose
8.849398009
vioscreen_legumes
0.013424658
vioscreen_leucine
6.799836125
vioscreen_line_gi
310.18503849999996
vioscreen_low_fat_dairy_serving
0.10679000000000001
vioscreen_lutzeax
11312.47603
vioscreen_lycopene
3771.696575
vioscreen_lysine
6.2927119010000006
vioscreen_m_egg
2.057178069
vioscreen_m_fish_hi
0.033863013
vioscreen_m_fish_lo
0.26484931
vioscreen_m_frank
0.13550684699999999
vioscreen_m_meat
3.8618632280000003
vioscreen_m_mpf
5.302383883
vioscreen_m_nutsd
0.640767137
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.848438336
vioscreen_m_soy
0.002438356
vioscreen_magnes
306.2024829
vioscreen_maltitol
0.0
vioscreen_maltose
2.349972743
vioscreen_mangan
2.887259538
vioscreen_mannitol
0.267397256
vioscreen_methhis3
19.70339924
vioscreen_methion
2.091753063
vioscreen_mfa141
0.238054835
vioscreen_mfa161
4.081287457
vioscreen_mfa181
80.78137843
vioscreen_mfa201
0.643917805
vioscreen_mfa221
0.013260273000000001
vioscreen_mfatot
86.19838399
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.93224529
vioscreen_nccglbr
116.3056614
vioscreen_nccglgr
81.35604666
vioscreen_niacin
18.55416444
vioscreen_niacineq
34.165996899999996
vioscreen_nitrogen
13.81482368
vioscreen_non_fried_fish_servings
0.34096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.192437661
vioscreen_oxalic
379.16832189999997
vioscreen_oxalicm
374.51579619999995
vioscreen_pantothe
6.573315095
vioscreen_pectins
4.306246656
vioscreen_pfa182
23.31068065
vioscreen_pfa183
3.094246977
vioscreen_pfa184
0.0016712329999999998
vioscreen_pfa204
0.256191787
vioscreen_pfa205
0.019589041
vioscreen_pfa225
0.012054793000000001
vioscreen_pfa226
0.065780823
vioscreen_pfatot
26.87021351
vioscreen_phenylal
3.805642658
vioscreen_phosphor
1378.877825
vioscreen_phytic
426.75406680000003
vioscreen_pinitol
0.017342466
vioscreen_potass
3231.346918
vioscreen_procdate
10/28/15
vioscreen_proline
4.867917246
vioscreen_protanim
68.01227526
vioscreen_protein
85.36422303
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.35213506
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
730.0
vioscreen_retinol
1565.394692
vioscreen_rgrain
1.543260214
vioscreen_ribofla
2.116986335
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.81099
vioscreen_satoco
0.0
vioscreen_selenium
120.508583
vioscreen_serine
4.175397648
vioscreen_sfa100
3.812355857
vioscreen_sfa120
4.323068279
vioscreen_sfa140
12.76276755
vioscreen_sfa160
52.05219392
vioscreen_sfa170
0.790383368
vioscreen_sfa180
22.9856753
vioscreen_sfa200
0.40268487799999997
vioscreen_sfa220
0.205369902
vioscreen_sfa40
4.7461088
vioscreen_sfa60
2.914985887
vioscreen_sfa80
1.799369917
vioscreen_sfatot
107.47120079999999
vioscreen_sodium
5347.213699
vioscreen_sorbitol
0.443041156
vioscreen_srvid
14632.0
vioscreen_starch
43.13983037
vioscreen_started
11/21/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.51298694
vioscreen_sweet_servings
0.7579
vioscreen_tagatose
1.480986127
vioscreen_tfa161t
0.177561637
vioscreen_tfa181t
6.142356726
vioscreen_tfa182t
0.854493024
vioscreen_tgrain
2.475616706
vioscreen_thiamin
1.1479177809999999
vioscreen_threonin
3.570218857
vioscreen_time
35.0
vioscreen_totaltfa
7.2684115479999996
vioscreen_totcla
0.895397197
vioscreen_totfolat
376.48202050000003
vioscreen_totsugar
78.75740047
vioscreen_tryptoph
0.9364109820000001
vioscreen_tyrosine
3.0998903039999997
vioscreen_user_id
14632.0
vioscreen_v_drkgr
0.76986293
vioscreen_v_orange
0.668986281
vioscreen_v_other
0.948191771
vioscreen_v_potato
0.180767132
vioscreen_v_starcy
0.08832877199999999
vioscreen_v_tomato
0.286739715
vioscreen_v_total
2.942903869
vioscreen_valine
4.543835616
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
31818.48767
vioscreen_vita_rae
2895.407877
vioscreen_vita_re
4225.405822
vioscreen_vitb12
7.316794868
vioscreen_vitb6
1.9627394580000002
vioscreen_vitc
111.3450771
vioscreen_vitd
7.582657988999999
vioscreen_vitd2
0.0004931509999999999
vioscreen_vitd3
7.582191781000001
vioscreen_vitd_iu
303.30631960000005
vioscreen_vite_iu
25.26471265
vioscreen_vitk
500.253339
vioscreen_water
3744.892466
vioscreen_weight
Not provided
vioscreen_wgrain
0.932328817
vioscreen_whole_grain_servings
0.73134
vioscreen_xylitol
0.025589042000000003
vioscreen_zinc
13.04512521
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
59.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)