10317.000027702; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633903
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T22:50:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027702
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27702
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
19.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
19:10
collection_timestamp
2015-07-28 19:10
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
New England
elevation
15.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
a8b7c6d1baf21aaabdad06bae9561d66890cce177f3174c3d10fe6b8d02dd020fc754c0995df28002730e8b673e80fff024f088a98b1bd01cf82d44c58bc0720
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
42.4
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-71.2
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027702
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
b09f0e992f8ef4f4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.14145205800000002
vioscreen_a_cal
13.88983572
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.759451921
vioscreen_addsugar
24.27361676
vioscreen_adsugtot
22.64616331
vioscreen_age
215.0
vioscreen_alanine
3.9592602869999998
vioscreen_alcohol
1.984273999
vioscreen_alcohol_servings
0.14145
vioscreen_alphacar
6153.863699
vioscreen_alphtoce
22.37791899
vioscreen_alphtoco
20.65216182
vioscreen_arginine
4.464328045
vioscreen_ash
24.47781464
vioscreen_aspartam
0.0
vioscreen_aspartic
6.935699379
vioscreen_avcarb
157.3083369
vioscreen_bcodeid
Not provided
vioscreen_betacar
40739.83288
vioscreen_betacryp
60.41290668
vioscreen_betaine
247.619542
vioscreen_betatoco
0.403260281
vioscreen_biochana
0.002136986
vioscreen_bmi
Not provided
vioscreen_caffeine
71.10660317
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.25227
vioscreen_calcium_servings
3.34806
vioscreen_calories
1822.1900679999999
vioscreen_carbo
200.74766699999998
vioscreen_cholest
482.45783389999997
vioscreen_choline
569.060488
vioscreen_clac9t11
0.020301369
vioscreen_clat10c12
0.004246575
vioscreen_copper
1.6494520209999999
vioscreen_coumest
0.0
vioscreen_cystine
1.1808493420000001
vioscreen_d_cheese
0.11657533
vioscreen_d_milk
0.09638356199999999
vioscreen_d_tot_soym
0.25227393600000003
vioscreen_d_total
0.25227393600000003
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
0.047726028
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.544246977
vioscreen_discfat_oil
50.81137093
vioscreen_discfat_sol
18.26016561
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00060274
vioscreen_f_citmlb
1.154082165
vioscreen_f_nj_citmlb
1.14572595
vioscreen_f_nj_other
0.67786305
vioscreen_f_nj_total
1.823589001
vioscreen_f_other
0.67786305
vioscreen_f_total
1.831944965
vioscreen_fat
87.05397046
vioscreen_fiber
43.43710135
vioscreen_fibh2o
7.539643755
vioscreen_fibinso
35.93054366
vioscreen_finished
7/17/15
vioscreen_fish_servings
3.0382700000000002
vioscreen_fol_deqv
683.1276968999999
vioscreen_fol_nat
606.2098887
vioscreen_fol_syn
45.24950771
vioscreen_formontn
0.000273973
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.7
vioscreen_fructose
20.33394692
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.8525753490000001
vioscreen_g_total
5.670355977000001
vioscreen_g_whl
4.817780795
vioscreen_galactos
0.129260285
vioscreen_gammtoco
15.28704249
vioscreen_gender
false
vioscreen_genistn
0.039835616000000004
vioscreen_glac
70.27898116
vioscreen_gltc
83.29265839
vioscreen_glucose
22.26550594
vioscreen_glutamic
11.8945754
vioscreen_glycine
3.162109375
vioscreen_glycitn
0.005534247
vioscreen_grams
3518.4821920000004
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.1
vioscreen_hei_score
80.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.7791505580000002
vioscreen_inositol
0.227945197
vioscreen_iron
17.50180999
vioscreen_isoleuc
3.251040775
vioscreen_isomalt
0.0
vioscreen_joules
7624.041095999999
vioscreen_juice_servings
0.01668
vioscreen_lactitol
0.0
vioscreen_lactose
1.750438283
vioscreen_legumes
0.014273973
vioscreen_leucine
5.502794907999999
vioscreen_line_gi
766.4041096
vioscreen_low_fat_dairy_serving
0.060520000000000004
vioscreen_lutzeax
50789.59452
vioscreen_lycopene
2309.689384
vioscreen_lysine
4.691479827
vioscreen_m_egg
2.045890411
vioscreen_m_fish_hi
1.108630204
vioscreen_m_fish_lo
0.622794499
vioscreen_m_frank
0.0
vioscreen_m_meat
0.15715068699999998
vioscreen_m_mpf
3.027945406
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
1.13936985
vioscreen_m_soy
0.000438356
vioscreen_magnes
499.5195634
vioscreen_maltitol
0.0
vioscreen_maltose
1.812931259
vioscreen_mangan
7.110465272000001
vioscreen_mannitol
0.384931507
vioscreen_methhis3
10.28769933
vioscreen_methion
1.59649307
vioscreen_mfa141
0.031534247
vioscreen_mfa161
1.204548122
vioscreen_mfa181
34.98019585
vioscreen_mfa201
0.456684938
vioscreen_mfa221
0.26772601
vioscreen_mfatot
37.08304527
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
20.65216182
vioscreen_nccglbr
129.6615047
vioscreen_nccglgr
90.70862586
vioscreen_niacin
17.24868231
vioscreen_niacineq
31.59315069
vioscreen_nitrogen
12.06046527
vioscreen_non_fried_fish_servings
2.855
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.731342974
vioscreen_oxalic
1298.590068
vioscreen_oxalicm
1362.8104449999998
vioscreen_pantothe
5.723780635
vioscreen_pectins
7.991150737999999
vioscreen_pfa182
21.56785772
vioscreen_pfa183
3.0777260139999996
vioscreen_pfa184
0.047753425
vioscreen_pfa204
0.236986301
vioscreen_pfa205
0.173232875
vioscreen_pfa225
0.065479451
vioscreen_pfa226
0.367671225
vioscreen_pfatot
25.61876605
vioscreen_phenylal
3.2045754630000003
vioscreen_phosphor
1239.187757
vioscreen_phytic
834.6532534
vioscreen_pinitol
0.000219178
vioscreen_potass
3944.769178
vioscreen_procdate
10/28/15
vioscreen_proline
3.6450683589999997
vioscreen_protanim
38.46991920000001
vioscreen_protein
74.66175621
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
36.19317477
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
284.0
vioscreen_retinol
271.0282962
vioscreen_rgrain
0.79060276
vioscreen_ribofla
1.971287725
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.96496
vioscreen_satoco
0.0
vioscreen_selenium
108.837286
vioscreen_serine
3.45274006
vioscreen_sfa100
0.057999999999999996
vioscreen_sfa120
0.07717808799999999
vioscreen_sfa140
0.495068485
vioscreen_sfa160
11.93148009
vioscreen_sfa170
0.076356167
vioscreen_sfa180
3.624876926
vioscreen_sfa200
0.220547966
vioscreen_sfa220
0.14572601300000002
vioscreen_sfa40
0.06958904
vioscreen_sfa60
0.032986301
vioscreen_sfa80
0.030958907
vioscreen_sfatot
16.95249625
vioscreen_sodium
4210.594178
vioscreen_sorbitol
0.49350682100000004
vioscreen_srvid
20176.0
vioscreen_starch
71.79292059
vioscreen_started
7/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.44370184
vioscreen_sweet_servings
0.07671
vioscreen_tagatose
0.363534253
vioscreen_tfa161t
0.018246576
vioscreen_tfa181t
0.9997536020000001
vioscreen_tfa182t
0.27183562
vioscreen_tgrain
4.7908768330000004
vioscreen_thiamin
1.174411053
vioscreen_threonin
3.105753692
vioscreen_time
23.0
vioscreen_totaltfa
1.393561711
vioscreen_totcla
0.025205482
vioscreen_totfolat
651.4592466
vioscreen_totsugar
68.4083262
vioscreen_tryptoph
0.862849405
vioscreen_tyrosine
2.565643729
vioscreen_user_id
20176.0
vioscreen_v_drkgr
3.491698884
vioscreen_v_orange
1.192739743
vioscreen_v_other
1.266246555
vioscreen_v_potato
0.050273974000000006
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.099013697
vioscreen_v_total
6.099917727999999
vioscreen_valine
3.6688219039999996
vioscreen_veg5_day
11.6
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
12.2
vioscreen_visit
1.0
vioscreen_vita_iu
73978.8274
vioscreen_vita_rae
3924.944178
vioscreen_vita_re
7578.857534000001
vioscreen_vitb12
3.793452015
vioscreen_vitb6
2.269479412
vioscreen_vitc
212.153125
vioscreen_vitd
7.7021644910000004
vioscreen_vitd2
0.0
vioscreen_vitd3
7.7021644910000004
vioscreen_vitd_iu
308.0865796
vioscreen_vite_iu
30.81243311
vioscreen_vitk
2237.523459
vioscreen_water
3145.992466
vioscreen_weight
Not provided
vioscreen_wgrain
4.000273906
vioscreen_whole_grain_servings
4.81778
vioscreen_xylitol
0.084
vioscreen_zinc
10.55386277
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily