American Gut Project; 10317.000031057
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634245
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031057
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
27.0
age_corrected
27.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031057
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1988.0
bmi
21.77
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/04/2015
collection month
August
collection season
Summer
collection time
11:45
collection_timestamp
2015-08-04 11:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1664.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c96403f84ec9df1019f14ccc4a49b8057c1270c739ea9527662d45d0e5aa7b5ae8fd2ff19df7add3b97e9dcd8c5c5a2ab128246ed6da0610ad09160ce1de8112
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past 3 months
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-105.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates
More than three
roommates_in_study
Yes
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031057
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Daily
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f408d79393dbbfa9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.117315089
vioscreen_a_cal
316.07737589999994
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.300767204
vioscreen_addsugar
26.31871254
vioscreen_adsugtot
22.1956456
vioscreen_age
215.0
vioscreen_alanine
3.000191968
vioscreen_alcohol
29.72909621
vioscreen_alcohol_servings
2.11732
vioscreen_alphacar
48.48336901
vioscreen_alphtoce
10.81865703
vioscreen_alphtoco
8.641917272999999
vioscreen_arginine
3.568136973
vioscreen_ash
25.6121067
vioscreen_aspartam
0.0
vioscreen_aspartic
7.663425059
vioscreen_avcarb
269.58347599999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
3871.39726
vioscreen_betacryp
125.75712759999999
vioscreen_betaine
186.1812928
vioscreen_betatoco
0.435534208
vioscreen_biochana
0.018164384
vioscreen_bmi
Not provided
vioscreen_caffeine
188.4132705
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.59104
vioscreen_calcium_servings
5.38074
vioscreen_calories
2729.6921230000003
vioscreen_carbo
297.3083262
vioscreen_cholest
337.7649615
vioscreen_choline
462.2824058
vioscreen_clac9t11
0.295890495
vioscreen_clat10c12
0.048328776
vioscreen_copper
1.739040761
vioscreen_coumest
0.202356166
vioscreen_cystine
0.8783560970000001
vioscreen_d_cheese
1.020054815
vioscreen_d_milk
2.570986061
vioscreen_d_tot_soym
3.591041377
vioscreen_d_total
3.591041377
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.2799453530000005
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.677890893
vioscreen_discfat_oil
30.76438089
vioscreen_discfat_sol
75.24046447
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.36189040100000003
vioscreen_f_nj_citmlb
0.147643834
vioscreen_f_nj_other
0.295835626
vioscreen_f_nj_total
0.44353420299999996
vioscreen_f_other
0.295835626
vioscreen_f_total
0.65778077
vioscreen_fat
118.6804259
vioscreen_fiber
27.72163956
vioscreen_fibh2o
9.809588372
vioscreen_fibinso
17.82550701
vioscreen_finished
8/4/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
583.9664384
vioscreen_fol_nat
356.18651539999996
vioscreen_fol_syn
133.9081015
vioscreen_formontn
0.001753425
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.18995
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.3
vioscreen_fructose
13.35537109
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
4.489479546
vioscreen_g_total
5.964576199
vioscreen_g_whl
1.47506856
vioscreen_galactos
0.23575345399999997
vioscreen_gammtoco
19.48811002
vioscreen_gender
false
vioscreen_genistn
6.735892016
vioscreen_glac
144.3525043
vioscreen_gltc
156.582042
vioscreen_glucose
15.76487719
vioscreen_glutamic
16.85698577
vioscreen_glycine
2.475013712
vioscreen_glycitn
0.698054776
vioscreen_grams
3294.6544519999998
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.5
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
1.5
vioscreen_hei2010_greens_beans
3.3
vioscreen_hei2010_protien_foods
2.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.0
vioscreen_hei2010_whole_grains
3.6
vioscreen_hei_drk_g_org_veg_leg
1.7
vioscreen_hei_fruit
1.5
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
4.7
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
2.0
vioscreen_hei_oils
9.4
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.0
vioscreen_hei_sodium
5.4
vioscreen_hei_sol_fat_alc_add_sug
6.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.8
vioscreen_height
Not provided
vioscreen_histidin
2.0023287
vioscreen_inositol
0.12282192300000001
vioscreen_iron
14.817095199999999
vioscreen_isoleuc
3.5210686669999998
vioscreen_isomalt
0.0
vioscreen_joules
11421.03219
vioscreen_juice_servings
0.42849
vioscreen_lactitol
0.0
vioscreen_lactose
32.98698363
vioscreen_legumes
0.315068493
vioscreen_leucine
6.077807282999999
vioscreen_line_gi
653.6486729
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6775.778767
vioscreen_lycopene
4362.205137
vioscreen_lysine
4.77841128
vioscreen_m_egg
0.6871506359999999
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.043095889000000005
vioscreen_m_meat
0.232246587
vioscreen_m_mpf
0.354821903
vioscreen_m_nutsd
0.6367945420000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.07947945299999999
vioscreen_m_soy
0.293150685
vioscreen_magnes
432.0502996999999
vioscreen_maltitol
0.0
vioscreen_maltose
3.455890812
vioscreen_mangan
4.580055383
vioscreen_mannitol
0.270465736
vioscreen_methhis3
1.66326018
vioscreen_methion
1.5770410830000001
vioscreen_mfa141
0.084
vioscreen_mfa161
1.089534059
vioscreen_mfa181
34.46506314
vioscreen_mfa201
0.267643821
vioscreen_mfa221
0.010164382
vioscreen_mfatot
36.26818814
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.641917272999999
vioscreen_nccglbr
191.0555865
vioscreen_nccglgr
133.6386451
vioscreen_niacin
21.4895655
vioscreen_niacineq
37.32942798
vioscreen_nitrogen
13.09082031
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.870603128
vioscreen_oxalic
337.0738228
vioscreen_oxalicm
303.8238442
vioscreen_pantothe
7.99345168
vioscreen_pectins
4.1738077239999996
vioscreen_pfa182
18.92622003
vioscreen_pfa183
2.8429042030000002
vioscreen_pfa184
0.0013698629999999998
vioscreen_pfa204
0.07189041
vioscreen_pfa205
0.0060273969999999994
vioscreen_pfa225
0.0052602740000000005
vioscreen_pfa226
0.015095892
vioscreen_pfatot
21.93893541
vioscreen_phenylal
3.696712128
vioscreen_phosphor
1805.847089
vioscreen_phytic
916.070976
vioscreen_pinitol
0.043863014000000006
vioscreen_potass
4429.435959
vioscreen_procdate
10/28/15
vioscreen_proline
6.240218991
vioscreen_protanim
40.07414116
vioscreen_protein
81.17236194
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
41.09985820000001
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
233.0
vioscreen_retinol
807.8167808
vioscreen_rgrain
4.568082458999999
vioscreen_ribofla
2.8189864489999996
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.11002999999999999
vioscreen_satoco
0.0
vioscreen_selenium
109.41464040000001
vioscreen_serine
4.071451934
vioscreen_sfa100
1.68186286
vioscreen_sfa120
1.931287624
vioscreen_sfa140
6.290657775
vioscreen_sfa160
24.21855201
vioscreen_sfa170
0.252493203
vioscreen_sfa180
10.68701306
vioscreen_sfa200
0.212821919
vioscreen_sfa220
0.211041093
vioscreen_sfa40
1.999780775
vioscreen_sfa60
1.338493034
vioscreen_sfa80
1.020274039
vioscreen_sfatot
50.3710777
vioscreen_sodium
3804.845548
vioscreen_sorbitol
0.248602713
vioscreen_srvid
20315.0
vioscreen_starch
138.5415561
vioscreen_started
8/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.42687687
vioscreen_sweet_servings
0.44932
vioscreen_tagatose
0.547260274
vioscreen_tfa161t
0.072493148
vioscreen_tfa181t
3.090246415
vioscreen_tfa182t
0.649342493
vioscreen_tgrain
6.375452162
vioscreen_thiamin
1.855753692
vioscreen_threonin
2.8591228330000003
vioscreen_time
24.0
vioscreen_totaltfa
4.009122498
vioscreen_totcla
0.34504114399999997
vioscreen_totfolat
490.0946062
vioscreen_totsugar
86.44274936
vioscreen_tryptoph
0.9526849620000001
vioscreen_tyrosine
2.9638902639999998
vioscreen_user_id
20315.0
vioscreen_v_drkgr
0.35884930299999995
vioscreen_v_orange
0.001589041
vioscreen_v_other
1.3460547880000002
vioscreen_v_potato
2.24386304
vioscreen_v_starcy
0.006575343000000001
vioscreen_v_tomato
0.20673972399999999
vioscreen_v_total
4.163644117
vioscreen_valine
4.21342439
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
8.3
vioscreen_visit
1.0
vioscreen_vita_iu
9292.121233
vioscreen_vita_rae
1137.694777
vioscreen_vita_re
1467.572432
vioscreen_vitb12
4.815040735
vioscreen_vitb6
2.739533892
vioscreen_vitc
126.34206979999999
vioscreen_vitd
10.83304126
vioscreen_vitd2
0.002547945
vioscreen_vitd3
10.83052092
vioscreen_vitd_iu
433.32165030000004
vioscreen_vite_iu
12.84213667
vioscreen_vitk
317.7248074
vioscreen_water
2764.626712
vioscreen_weight
Not provided
vioscreen_wgrain
1.807397294
vioscreen_whole_grain_servings
1.47507
vioscreen_xylitol
0.021369864
vioscreen_zinc
12.01832861
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)