American Gut Project; 10317.000030157
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634137
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030157
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030157
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
25.53
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/02/2015
collection month
September
collection season
Fall
collection time
08:00
collection_timestamp
2015-09-02 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
54.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c2788891be79da16fa6510dcaa43977d33761ed929aa74bb838cc54d4ff677f5c344be59c4421906855d81fc1100d0b55783e54e75da5d4877c733cff0c773d6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000030157
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
2692b6849ebf70cb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
7.174739806
vioscreen_a_cal
889.9075342
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.80835697
vioscreen_addsugar
57.81416417
vioscreen_adsugtot
48.22906678
vioscreen_age
215.0
vioscreen_alanine
4.84901307
vioscreen_alcohol
107.42983729999999
vioscreen_alcohol_servings
7.174739999999999
vioscreen_alphacar
561.1609161
vioscreen_alphtoce
12.9821075
vioscreen_alphtoco
11.80454837
vioscreen_arginine
5.509972977
vioscreen_ash
30.036986300000002
vioscreen_aspartam
0.0
vioscreen_aspartic
9.521752595
vioscreen_avcarb
246.16190069999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
3328.4058219999997
vioscreen_betacryp
103.9817423
vioscreen_betaine
215.16898540000003
vioscreen_betatoco
0.444739731
vioscreen_biochana
0.013698631000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
867.8042808
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.79548
vioscreen_calcium_servings
4.4970099999999995
vioscreen_calories
3389.430137
vioscreen_carbo
271.94501280000003
vioscreen_cholest
362.42636989999994
vioscreen_choline
508.74880139999993
vioscreen_clac9t11
0.28484929800000003
vioscreen_clat10c12
0.06241097599999999
vioscreen_copper
1.6316162109999999
vioscreen_coumest
0.49841095399999996
vioscreen_cystine
1.134602669
vioscreen_d_cheese
1.400876732
vioscreen_d_milk
1.3688767519999998
vioscreen_d_tot_soym
2.7954795519999998
vioscreen_d_total
2.7954795519999998
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.638328782
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.012958851
vioscreen_discfat_oil
34.54638271
vioscreen_discfat_sol
72.4734482
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00109589
vioscreen_f_citmlb
0.40317809200000004
vioscreen_f_nj_citmlb
0.335178093
vioscreen_f_nj_other
1.0504382829999999
vioscreen_f_nj_total
1.38569871
vioscreen_f_other
1.0504382829999999
vioscreen_f_total
1.45369873
vioscreen_fat
133.0222603
vioscreen_fiber
25.77304152
vioscreen_fibh2o
12.01010943
vioscreen_fibinso
13.69734054
vioscreen_finished
9/1/15
vioscreen_fish_servings
1.64327
vioscreen_fol_deqv
478.50184079999997
vioscreen_fol_nat
342.8000428
vioscreen_fol_syn
79.79765090000001
vioscreen_formontn
0.002219178
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.1
vioscreen_frtsumm
2.9
vioscreen_fructose
21.57909889
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.9331780419999998
vioscreen_g_total
4.338822373
vioscreen_g_whl
1.405616405
vioscreen_galactos
0.523671189
vioscreen_gammtoco
9.827919654
vioscreen_gender
false
vioscreen_genistn
0.40800007899999996
vioscreen_glac
116.1436216
vioscreen_gltc
124.5775257
vioscreen_glucose
23.55046286
vioscreen_glutamic
19.657560999999998
vioscreen_glycine
4.458601777
vioscreen_glycitn
0.053589045
vioscreen_grams
6013.726712
vioscreen_hei2010_dairy
6.3
vioscreen_hei2010_empty_calories
5.3
vioscreen_hei2010_fatty_acids
1.1
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
1.3
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
54.8
vioscreen_hei2010_sea_foods_plant_protiens
4.5
vioscreen_hei2010_sodium
7.6
vioscreen_hei2010_veg
3.3
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.8
vioscreen_hei_drk_g_org_veg_leg
1.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
2.1
vioscreen_hei_meat_beans
9.8
vioscreen_hei_milk
6.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
1.8
vioscreen_hei_score
48.0
vioscreen_hei_sodium
6.1
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
3.3
vioscreen_hei_whl_grains
1.4
vioscreen_height
Not provided
vioscreen_histidin
2.955342332
vioscreen_inositol
0.405863012
vioscreen_iron
15.22520602
vioscreen_isoleuc
4.601863495
vioscreen_isomalt
0.0
vioscreen_joules
14181.37945
vioscreen_juice_servings
0.13602999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
19.41172678
vioscreen_legumes
0.049369864000000006
vioscreen_leucine
8.014987559
vioscreen_line_gi
554.5135274
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
2652.64863
vioscreen_lycopene
6914.174658
vioscreen_lysine
7.218904511
vioscreen_m_egg
0.220904123
vioscreen_m_fish_hi
0.447506839
vioscreen_m_fish_lo
0.48893148299999994
vioscreen_m_frank
1.026410999
vioscreen_m_meat
4.060137187
vioscreen_m_mpf
6.604821276
vioscreen_m_nutsd
1.305123274
vioscreen_m_organ
0.0
vioscreen_m_poult
0.581863027
vioscreen_m_soy
0.009452054
vioscreen_magnes
504.2221318
vioscreen_maltitol
0.0
vioscreen_maltose
4.086438824
vioscreen_mangan
7.337616385
vioscreen_mannitol
0.359452046
vioscreen_methhis3
23.64019424
vioscreen_methion
2.339890404
vioscreen_mfa141
0.332630126
vioscreen_mfa161
2.464794086
vioscreen_mfa181
46.80759311
vioscreen_mfa201
0.485753558
vioscreen_mfa221
0.07002739599999999
vioscreen_mfatot
50.65603596
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.80454837
vioscreen_nccglbr
190.117637
vioscreen_nccglgr
132.9936965
vioscreen_niacin
29.03237907
vioscreen_niacineq
46.84143301
vioscreen_nitrogen
17.12997244
vioscreen_non_fried_fish_servings
1.64327
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.955314908
vioscreen_oxalic
326.6332406
vioscreen_oxalicm
338.1572988
vioscreen_pantothe
9.698355897
vioscreen_pectins
3.234493057
vioscreen_pfa182
16.93577965
vioscreen_pfa183
1.6924928430000001
vioscreen_pfa184
0.018054794
vioscreen_pfa204
0.131287677
vioscreen_pfa205
0.068986302
vioscreen_pfa225
0.041643832
vioscreen_pfa226
0.134849298
vioscreen_pfatot
19.13621843
vioscreen_phenylal
4.461314413
vioscreen_phosphor
1893.685274
vioscreen_phytic
801.9321062000001
vioscreen_pinitol
0.021315068
vioscreen_potass
5272.45
vioscreen_procdate
10/28/15
vioscreen_proline
6.847533176000001
vioscreen_protanim
76.00115582
vioscreen_protein
105.73767120000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.73690069
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
137.0
vioscreen_retinol
593.674101
vioscreen_rgrain
2.7609589039999998
vioscreen_ribofla
3.4885203739999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.19885
vioscreen_satoco
0.0
vioscreen_selenium
138.20835830000001
vioscreen_serine
4.682219539
vioscreen_sfa100
1.282657404
vioscreen_sfa120
1.604903882
vioscreen_sfa140
5.549836125
vioscreen_sfa160
26.93523384
vioscreen_sfa170
0.336054846
vioscreen_sfa180
12.17622003
vioscreen_sfa200
0.263369835
vioscreen_sfa220
0.254767097
vioscreen_sfa40
1.5409589380000002
vioscreen_sfa60
0.860602726
vioscreen_sfa80
0.570410951
vioscreen_sfatot
52.16263378
vioscreen_sodium
4466.349658
vioscreen_sorbitol
0.842630381
vioscreen_srvid
20572.0
vioscreen_starch
84.32795912
vioscreen_started
9/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.22317798
vioscreen_sweet_servings
1.28219
vioscreen_tagatose
1.806383441
vioscreen_tfa161t
0.14750685
vioscreen_tfa181t
3.350355843
vioscreen_tfa182t
0.644794579
vioscreen_tgrain
4.3857258
vioscreen_thiamin
1.715999906
vioscreen_threonin
3.8687670560000003
vioscreen_time
38.0
vioscreen_totaltfa
4.2521093080000005
vioscreen_totcla
0.34717810600000004
vioscreen_totfolat
422.5974743
vioscreen_totsugar
105.697378
vioscreen_tryptoph
1.06846581
vioscreen_tyrosine
3.6488495289999996
vioscreen_user_id
20572.0
vioscreen_v_drkgr
0.171095893
vioscreen_v_orange
0.10893151300000001
vioscreen_v_other
0.7329041359999999
vioscreen_v_potato
0.876657481
vioscreen_v_starcy
0.018273973
vioscreen_v_tomato
0.549287603
vioscreen_v_total
2.457068874
vioscreen_valine
5.284192396
vioscreen_veg5_day
2.7
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.9
vioscreen_visit
1.0
vioscreen_vita_iu
8082.780137000001
vioscreen_vita_rae
898.7570205
vioscreen_vita_re
1203.8375859999999
vioscreen_vitb12
6.82646685
vioscreen_vitb6
2.733973171
vioscreen_vitc
87.50439319
vioscreen_vitd
10.04873983
vioscreen_vitd2
0.001589041
vioscreen_vitd3
10.04723218
vioscreen_vitd_iu
401.9495933
vioscreen_vite_iu
17.52923668
vioscreen_vitk
135.8056079
vioscreen_water
5395.703082
vioscreen_weight
Not provided
vioscreen_wgrain
1.624739806
vioscreen_whole_grain_servings
1.40562
vioscreen_xylitol
0.097753425
vioscreen_zinc
17.14213934
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily