American Gut Project; 10317.000021974
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632966
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:27:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021974
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
Not provided
age years
Not provided
age_corrected
Not provided
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
21974
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Not provided
birth year
1983.0
bmi
18.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Not provided
collection date
2015-06-22
collection month
June
collection season
Summer
collection time
15:00
collection_timestamp
2015-06-22 15:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
Not provided
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
43.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Not provided
geo loc name
Australia
gluten
Not provided
has_physical_specimen
true
height cm
201.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1a65c79322b7025c055d22a78c5950e0cffcbf14ad7e0d9fcf2e855faa3cb2f074b794292ca61d70b67309fdf94be522c23e2387ac38c0ae497d7b72d6dd7404
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
Not provided
last_move
Not provided
last_travel
Not provided
latitude
-27.5
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
No
longitude
153.0
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000021974
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
QLD
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
3ac945a47b93220b
teethbrushing_frequency
Daily
thyroid
Not provided
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.163452044
vioscreen_a_cal
20.99887628
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.252712636
vioscreen_addsugar
16.28939694
vioscreen_adsugtot
14.28986248
vioscreen_age
215.0
vioscreen_alanine
4.1479458739999995
vioscreen_alcohol
2.291342372
vioscreen_alcohol_servings
0.16345
vioscreen_alphacar
886.9739726
vioscreen_alphtoce
6.778302253
vioscreen_alphtoco
5.407835576
vioscreen_arginine
4.553343389
vioscreen_ash
15.71898812
vioscreen_aspartam
0.0
vioscreen_aspartic
6.936082647
vioscreen_avcarb
107.088003
vioscreen_bcodeid
Not provided
vioscreen_betacar
5779.267123
vioscreen_betacryp
50.19225171
vioscreen_betaine
122.47275259999998
vioscreen_betatoco
0.277095868
vioscreen_biochana
0.014739726000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
12.26805437
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.5734199999999999
vioscreen_calcium_servings
1.6076700000000002
vioscreen_calories
1391.890068
vioscreen_carbo
120.57036599999999
vioscreen_cholest
315.3160103
vioscreen_choline
342.5928938
vioscreen_clac9t11
0.097506839
vioscreen_clat10c12
0.026520557
vioscreen_copper
0.952383381
vioscreen_coumest
0.05161643900000001
vioscreen_cystine
1.033424775
vioscreen_d_cheese
0.36854795700000004
vioscreen_d_milk
0.202958909
vioscreen_d_tot_soym
0.573424666
vioscreen_d_total
0.573424666
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.09679452599999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.891616779
vioscreen_discfat_oil
12.23890598
vioscreen_discfat_sol
33.44084707
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0006849310000000001
vioscreen_f_citmlb
0.146958902
vioscreen_f_nj_citmlb
0.036767123
vioscreen_f_nj_other
0.418657569
vioscreen_f_nj_total
0.45545202799999995
vioscreen_f_other
0.468246627
vioscreen_f_total
0.6152602939999999
vioscreen_fat
64.7148277
vioscreen_fiber
13.48370211
vioscreen_fibh2o
3.7020280389999995
vioscreen_fibinso
9.777451439
vioscreen_finished
1/31/15
vioscreen_fish_servings
1.15173
vioscreen_fol_deqv
270.0230522
vioscreen_fol_nat
161.88052230000002
vioscreen_fol_syn
63.55128425
vioscreen_formontn
0.002438356
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.5041100000000001
vioscreen_frt5_day
0.7
vioscreen_frtsumm
1.2
vioscreen_fructose
12.73805517
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
3.4685754230000003
vioscreen_g_total
4.318027611000001
vioscreen_g_whl
0.849452021
vioscreen_galactos
0.095260275
vioscreen_gammtoco
12.41490395
vioscreen_gender
false
vioscreen_genistn
0.124657545
vioscreen_glac
52.62692637
vioscreen_gltc
57.35017123
vioscreen_glucose
12.8698095
vioscreen_glutamic
13.48890331
vioscreen_glycine
3.8361100710000002
vioscreen_glycitn
0.021534246
vioscreen_grams
2574.226712
vioscreen_hei2010_dairy
3.2
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
2.8
vioscreen_hei2010_greens_beans
1.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.2
vioscreen_hei2010_score
57.5
vioscreen_hei2010_sea_foods_plant_protiens
3.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.1
vioscreen_hei2010_whole_grains
4.1
vioscreen_hei_drk_g_org_veg_leg
3.7
vioscreen_hei_fruit
2.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.2
vioscreen_hei_non_juice_frt
4.1
vioscreen_hei_oils
7.3
vioscreen_hei_sat_fat
3.3
vioscreen_hei_score
61.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
2.291205586
vioscreen_inositol
0.076465748
vioscreen_iron
9.4484375
vioscreen_isoleuc
3.627753104
vioscreen_isomalt
0.0
vioscreen_joules
5823.666438
vioscreen_juice_servings
0.31956
vioscreen_lactitol
0.0
vioscreen_lactose
3.231369729
vioscreen_legumes
0.033643835
vioscreen_leucine
5.976165186
vioscreen_line_gi
233.3651755
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2239.898288
vioscreen_lycopene
3419.740753
vioscreen_lysine
5.7970134579999995
vioscreen_m_egg
0.616547969
vioscreen_m_fish_hi
0.173123284
vioscreen_m_fish_lo
0.485945192
vioscreen_m_frank
0.384438334
vioscreen_m_meat
3.0375886260000002
vioscreen_m_mpf
6.831068065
vioscreen_m_nutsd
0.005041096
vioscreen_m_organ
0.0
vioscreen_m_poult
2.750000167
vioscreen_m_soy
0.00690411
vioscreen_magnes
192.6563998
vioscreen_maltitol
0.0
vioscreen_maltose
2.5391783830000003
vioscreen_mangan
2.223917587
vioscreen_mannitol
0.185178072
vioscreen_methhis3
26.13095837
vioscreen_methion
1.925096151
vioscreen_mfa141
0.113643845
vioscreen_mfa161
1.410438684
vioscreen_mfa181
24.22723673
vioscreen_mfa201
0.235890407
vioscreen_mfa221
0.033260272
vioscreen_mfatot
26.20504067
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
5.407835576
vioscreen_nccglbr
89.09283497
vioscreen_nccglgr
62.33230415
vioscreen_niacin
19.95115315
vioscreen_niacineq
33.76646779
vioscreen_nitrogen
12.85295778
vioscreen_non_fried_fish_servings
0.72423
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4440824330000002
vioscreen_oxalic
89.40932149
vioscreen_oxalicm
73.77092252
vioscreen_pantothe
3.590876164
vioscreen_pectins
2.289835891
vioscreen_pfa182
10.10153374
vioscreen_pfa183
1.250712188
vioscreen_pfa184
0.007753424
vioscreen_pfa204
0.17712327100000003
vioscreen_pfa205
0.049013707000000004
vioscreen_pfa225
0.032164383
vioscreen_pfa226
0.105671242
vioscreen_pfatot
11.82734375
vioscreen_phenylal
3.268109883
vioscreen_phosphor
907.6916951999999
vioscreen_phytic
355.2720462
vioscreen_pinitol
0.0027397259999999996
vioscreen_potass
1801.872089
vioscreen_procdate
10/28/15
vioscreen_proline
4.331259364
vioscreen_protanim
63.49619007
vioscreen_protein
79.4994649
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.0040534
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
584.0
vioscreen_retinol
191.29073200000002
vioscreen_rgrain
3.378109616
vioscreen_ribofla
1.1776986740000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.5331199999999999
vioscreen_satoco
0.0
vioscreen_selenium
102.7251605
vioscreen_serine
3.307178403
vioscreen_sfa100
0.263287688
vioscreen_sfa120
0.285287664
vioscreen_sfa140
1.453259946
vioscreen_sfa160
11.69440951
vioscreen_sfa170
0.084465753
vioscreen_sfa180
5.161123114
vioscreen_sfa200
0.102273978
vioscreen_sfa220
0.043369868
vioscreen_sfa40
0.316684921
vioscreen_sfa60
0.170520532
vioscreen_sfa80
0.116904115
vioscreen_sfatot
20.01339897
vioscreen_sodium
3191.283562
vioscreen_sorbitol
0.3612877
vioscreen_srvid
17029.0
vioscreen_starch
56.99969499
vioscreen_started
1/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.447396056
vioscreen_sweet_servings
0.34542
vioscreen_tagatose
0.154657547
vioscreen_tfa161t
0.045945195999999994
vioscreen_tfa181t
3.180849007
vioscreen_tfa182t
0.377424684
vioscreen_tgrain
4.462849155
vioscreen_thiamin
1.079205657
vioscreen_threonin
3.143205867
vioscreen_time
34.0
vioscreen_totaltfa
3.668630271
vioscreen_totcla
0.12454794300000001
vioscreen_totfolat
225.4318707
vioscreen_totsugar
39.51024722
vioscreen_tryptoph
0.82939729
vioscreen_tyrosine
2.591150237
vioscreen_user_id
17029.0
vioscreen_v_drkgr
0.074547948
vioscreen_v_orange
0.30934247600000003
vioscreen_v_other
0.991452152
vioscreen_v_potato
0.014575343000000001
vioscreen_v_starcy
0.09320548099999999
vioscreen_v_tomato
0.19693149899999998
vioscreen_v_total
1.680109562
vioscreen_valine
3.890246415
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.4
vioscreen_visit
1.0
vioscreen_vita_iu
11050.86096
vioscreen_vita_rae
711.9450771
vioscreen_vita_re
1232.600086
vioscreen_vitb12
3.64517839
vioscreen_vitb6
1.37041116
vioscreen_vitc
45.59833048
vioscreen_vitd
3.0442737319999997
vioscreen_vitd2
0.0016712329999999998
vioscreen_vitd3
3.0426848110000004
vioscreen_vitd_iu
121.7709493
vioscreen_vite_iu
8.063752809
vioscreen_vitk
106.42298799999999
vioscreen_water
2331.764384
vioscreen_weight
Not provided
vioscreen_wgrain
1.084794638
vioscreen_whole_grain_servings
0.84945
vioscreen_xylitol
0.010383561
vioscreen_zinc
10.01063115
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)