American Gut Project; 10317.000030133
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634133
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030133
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030133
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1963.0
bmi
21.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
20:00
collection_timestamp
2015-09-09 20:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
81.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
45f03a362900c6ddb353a20ff9a2dd02edf0f484e1a5ae7f854165d9e4592143df6652d41a16bd4eaa9b86da13b645ba97d71daa6245b7d6c0474c46bab85291
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.1
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
0.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030133
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
16ddaec34d338683
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.17161643699999998
vioscreen_a_cal
20.73367134
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.690246415
vioscreen_addsugar
31.00281999
vioscreen_adsugtot
27.06238495
vioscreen_age
215.0
vioscreen_alanine
3.072876645
vioscreen_alcohol
2.594684925
vioscreen_alcohol_servings
0.17162
vioscreen_alphacar
4184.307192
vioscreen_alphtoce
11.43545056
vioscreen_alphtoco
10.90024615
vioscreen_arginine
3.701589255
vioscreen_ash
17.44400016
vioscreen_aspartam
0.0
vioscreen_aspartic
5.948109081
vioscreen_avcarb
135.1762307
vioscreen_bcodeid
Not provided
vioscreen_betacar
23476.389040000002
vioscreen_betacryp
228.1428296
vioscreen_betaine
118.5524936
vioscreen_betatoco
0.171397264
vioscreen_biochana
0.007041096
vioscreen_bmi
Not provided
vioscreen_caffeine
91.40920377
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.60485
vioscreen_calcium_servings
2.28882
vioscreen_calories
1289.389469
vioscreen_carbo
167.5061002
vioscreen_cholest
302.7634632
vioscreen_choline
391.0923373
vioscreen_clac9t11
0.066164388
vioscreen_clat10c12
0.013123288
vioscreen_copper
1.21249306
vioscreen_coumest
0.05493151
vioscreen_cystine
0.769917862
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.23101371899999998
vioscreen_d_tot_soym
0.604849327
vioscreen_d_total
0.604849327
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.201369863
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.609999983
vioscreen_discfat_oil
10.96473941
vioscreen_discfat_sol
17.09750642
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001835616
vioscreen_f_citmlb
1.390356027
vioscreen_f_nj_citmlb
1.387314972
vioscreen_f_nj_other
1.163835583
vioscreen_f_nj_total
2.551150638
vioscreen_f_other
1.163835583
vioscreen_f_total
2.554191694
vioscreen_fat
46.02939855
vioscreen_fiber
32.33115101
vioscreen_fibh2o
8.000602659
vioscreen_fibinso
24.55123341
vioscreen_finished
8/29/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
396.8610445
vioscreen_fol_nat
392.6618579
vioscreen_fol_syn
2.468219245
vioscreen_formontn
0.002493151
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.1
vioscreen_fructose
22.74254869
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.28008218
vioscreen_g_total
1.254794521
vioscreen_g_whl
0.974712382
vioscreen_galactos
0.5595890410000001
vioscreen_gammtoco
4.613644117
vioscreen_gender
false
vioscreen_genistn
0.17306848800000002
vioscreen_glac
56.27123823
vioscreen_gltc
66.28909996
vioscreen_glucose
20.10561724
vioscreen_glutamic
9.959179687999999
vioscreen_glycine
2.592027304
vioscreen_glycitn
0.040383561
vioscreen_grams
2146.583904
vioscreen_hei2010_dairy
3.6
vioscreen_hei2010_empty_calories
18.9
vioscreen_hei2010_fatty_acids
4.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.2
vioscreen_hei2010_sea_foods_plant_protiens
3.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.1
vioscreen_hei_sat_fat
7.6
vioscreen_hei_score
70.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.5
vioscreen_height
Not provided
vioscreen_histidin
1.580410892
vioscreen_inositol
0.17917808600000001
vioscreen_iron
10.16835804
vioscreen_isoleuc
2.853232689
vioscreen_isomalt
0.0
vioscreen_joules
5394.803767
vioscreen_juice_servings
0.0060799999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
10.012903999999999
vioscreen_legumes
0.0
vioscreen_leucine
4.434027183
vioscreen_line_gi
385.1434932
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
18983.7863
vioscreen_lycopene
5530.139040999999
vioscreen_lysine
4.335178323
vioscreen_m_egg
0.9972602740000001
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
2.967671099
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.0
vioscreen_m_poult
2.967671099
vioscreen_m_soy
0.005835616
vioscreen_magnes
338.2477312
vioscreen_maltitol
0.0
vioscreen_maltose
2.870493432
vioscreen_mangan
4.016849048
vioscreen_mannitol
0.47545207799999994
vioscreen_methhis3
12.14671179
vioscreen_methion
1.3922466119999999
vioscreen_mfa141
0.008273973
vioscreen_mfa161
0.884602753
vioscreen_mfa181
16.89939533
vioscreen_mfa201
0.166410964
vioscreen_mfa221
0.01709589
vioscreen_mfatot
18.02775444
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.90024615
vioscreen_nccglbr
100.4527718
vioscreen_nccglgr
70.26242509
vioscreen_niacin
16.77320473
vioscreen_niacineq
28.34608305
vioscreen_nitrogen
9.985451894
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.198328724
vioscreen_oxalic
597.6380565000001
vioscreen_oxalicm
627.2187928
vioscreen_pantothe
6.114629709
vioscreen_pectins
7.077974502000001
vioscreen_pfa182
7.094055009
vioscreen_pfa183
1.111616412
vioscreen_pfa184
0.000136986
vioscreen_pfa204
0.19608219100000002
vioscreen_pfa205
0.010657535
vioscreen_pfa225
0.022520548999999997
vioscreen_pfa226
0.054328772000000004
vioscreen_pfatot
8.53353422
vioscreen_phenylal
2.6210685000000002
vioscreen_phosphor
940.4898116
vioscreen_phytic
407.1701627
vioscreen_pinitol
0.003178082
vioscreen_potass
3463.569863
vioscreen_procdate
10/28/15
vioscreen_proline
3.07506856
vioscreen_protanim
38.47706817
vioscreen_protein
61.893509200000004
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.409779
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
165.0
vioscreen_retinol
218.8148973
vioscreen_rgrain
0.240958896
vioscreen_ribofla
1.680876766
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.9179700000000002
vioscreen_satoco
0.0
vioscreen_selenium
71.83848994
vioscreen_serine
2.787260207
vioscreen_sfa100
0.35213698299999996
vioscreen_sfa120
0.402821914
vioscreen_sfa140
1.291342539
vioscreen_sfa160
8.405754361
vioscreen_sfa170
0.060191779
vioscreen_sfa180
2.953698563
vioscreen_sfa200
0.093260276
vioscreen_sfa220
0.119917799
vioscreen_sfa40
0.447835635
vioscreen_sfa60
0.27030138
vioscreen_sfa80
0.16917808199999998
vioscreen_sfatot
14.71197159
vioscreen_sodium
2644.948288
vioscreen_sorbitol
0.5202191079999999
vioscreen_srvid
20533.0
vioscreen_starch
29.52914972
vioscreen_started
8/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.68306667
vioscreen_sweet_servings
0.56986
vioscreen_tagatose
2.985972616
vioscreen_tfa161t
0.005808219
vioscreen_tfa181t
0.808082225
vioscreen_tfa182t
0.133616429
vioscreen_tgrain
1.253178092
vioscreen_thiamin
0.888767023
vioscreen_threonin
2.507643608
vioscreen_time
13.0
vioscreen_totaltfa
1.004876793
vioscreen_totcla
0.079890411
vioscreen_totfolat
395.1300514
vioscreen_totsugar
89.62567423
vioscreen_tryptoph
0.696356201
vioscreen_tyrosine
2.130849342
vioscreen_user_id
20533.0
vioscreen_v_drkgr
1.398547865
vioscreen_v_orange
1.0980000540000001
vioscreen_v_other
1.221698667
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.289041096
vioscreen_v_tomato
0.386164375
vioscreen_v_total
4.393479439
vioscreen_valine
3.174027451
vioscreen_veg5_day
8.8
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
8.8
vioscreen_visit
1.0
vioscreen_vita_iu
43532.68493
vioscreen_vita_rae
2359.033562
vioscreen_vita_re
4499.25274
vioscreen_vitb12
1.67032872
vioscreen_vitb6
2.051287424
vioscreen_vitc
208.4401327
vioscreen_vitd
1.708876686
vioscreen_vitd2
0.0
vioscreen_vitd3
1.708876686
vioscreen_vitd_iu
68.35506742
vioscreen_vite_iu
16.25123074
vioscreen_vitk
716.0098031
vioscreen_water
1861.9678079999999
vioscreen_weight
Not provided
vioscreen_wgrain
1.012219238
vioscreen_whole_grain_servings
0.9747100000000001
vioscreen_xylitol
0.054027395
vioscreen_zinc
7.623644183
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)