American Gut Project; 10317.000022914
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632574
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:11Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022914
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
48.0
age_corrected
48.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22914
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Self-diagnosed
birth year
1967.0
bmi
22.92
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-22
collection month
January
collection season
Winter
collection time
08:00
collection_timestamp
2015-01-22 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am ambidextrous
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
446.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
712f78ce07a81a3f175ec9d9d1fb6408013331ffce721175cc118dccaf8e79380204011c966c0619c33a6a902a159aa7c3174823d6694881e147e2a09ec5306d
host taxid
9606
ibd
Diagnosed by an alternative medicine practitioner
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
38.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-78.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022914
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
cd6c745bd10898d8
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.288191788
vioscreen_a_cal
35.58619167
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.438739432
vioscreen_addsugar
45.15818707
vioscreen_adsugtot
38.82211045
vioscreen_age
215.0
vioscreen_alanine
3.9336439160000003
vioscreen_alcohol
4.268328941
vioscreen_alcohol_servings
0.28819
vioscreen_alphacar
9147.805479
vioscreen_alphtoce
28.20646137
vioscreen_alphtoco
25.5765732
vioscreen_arginine
5.411946169
vioscreen_ash
31.51884899
vioscreen_aspartam
0.0
vioscreen_aspartic
8.670712489
vioscreen_avcarb
307.5571704
vioscreen_bcodeid
Not provided
vioscreen_betacar
34781.8137
vioscreen_betacryp
161.84301159999998
vioscreen_betaine
306.21247860000005
vioscreen_betatoco
0.891890434
vioscreen_biochana
0.022219177000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
142.256357
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.75822
vioscreen_calcium_servings
4.259530000000001
vioscreen_calories
2823.761815
vioscreen_carbo
357.6334332
vioscreen_cholest
330.9761344
vioscreen_choline
543.6306507
vioscreen_clac9t11
0.014465755
vioscreen_clat10c12
0.0038082190000000003
vioscreen_copper
2.672438697
vioscreen_coumest
0.126410957
vioscreen_cystine
1.423205566
vioscreen_d_cheese
0.11619178
vioscreen_d_milk
0.054602735
vioscreen_d_tot_soym
0.7582191779999999
vioscreen_d_total
0.7582191779999999
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
13.25372432
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.934575664
vioscreen_discfat_oil
90.03025471
vioscreen_discfat_sol
13.07227499
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0031232879999999997
vioscreen_f_citmlb
0.92539723
vioscreen_f_nj_citmlb
0.171397254
vioscreen_f_nj_other
2.088027578
vioscreen_f_nj_total
2.259479679
vioscreen_f_other
2.414082399
vioscreen_f_total
3.3395073039999996
vioscreen_fat
123.4345034
vioscreen_fiber
50.07749358
vioscreen_fibh2o
12.61142311
vioscreen_fibinso
37.62770227
vioscreen_finished
1/22/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
1019.34512
vioscreen_fol_nat
638.3019692
vioscreen_fol_syn
224.09315069999997
vioscreen_formontn
0.004739726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.4
vioscreen_frtsumm
6.7
vioscreen_fructose
46.53900364
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.553150752
vioscreen_g_total
6.843068412999999
vioscreen_g_whl
3.28994542
vioscreen_galactos
1.040821901
vioscreen_gammtoco
22.13611007
vioscreen_gender
false
vioscreen_genistn
17.19191727
vioscreen_glac
139.73115369999996
vioscreen_gltc
156.6449486
vioscreen_glucose
45.30992081
vioscreen_glutamic
18.40088024
vioscreen_glycine
3.348685319
vioscreen_glycitn
2.676027397
vioscreen_grams
5532.889384
vioscreen_hei2010_dairy
2.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
9.7
vioscreen_hei_milk
2.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
81.6
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.9
vioscreen_height
Not provided
vioscreen_histidin
2.104821945
vioscreen_inositol
0.46287662
vioscreen_iron
24.46808915
vioscreen_isoleuc
3.7562730760000003
vioscreen_isomalt
0.0
vioscreen_joules
11814.61781
vioscreen_juice_servings
2.16008
vioscreen_lactitol
0.0
vioscreen_lactose
9.238958824
vioscreen_legumes
0.095232883
vioscreen_leucine
6.4526848779999995
vioscreen_line_gi
744.872089
vioscreen_low_fat_dairy_serving
0.5874199999999999
vioscreen_lutzeax
16323.84521
vioscreen_lycopene
18273.7274
vioscreen_lysine
4.721260635
vioscreen_m_egg
1.5752055130000002
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.028712328
vioscreen_m_meat
0.06454794400000001
vioscreen_m_mpf
0.182328775
vioscreen_m_nutsd
1.7109042230000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.089095892
vioscreen_m_soy
2.975260528
vioscreen_magnes
577.4233305
vioscreen_maltitol
0.0
vioscreen_maltose
5.709644558
vioscreen_mangan
8.517095195
vioscreen_mannitol
1.2266575640000001
vioscreen_methhis3
0.836630124
vioscreen_methion
1.522657755
vioscreen_mfa141
0.018410958
vioscreen_mfa161
1.160191784
vioscreen_mfa181
62.157528899999996
vioscreen_mfa201
0.510876674
vioscreen_mfa221
0.016465754
vioscreen_mfatot
64.02354452
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
25.5765732
vioscreen_nccglbr
232.6571276
vioscreen_nccglgr
162.7317637
vioscreen_niacin
24.47624679
vioscreen_niacineq
40.97296126
vioscreen_nitrogen
14.87959118
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.9835067960000003
vioscreen_oxalic
693.4552226
vioscreen_oxalicm
728.570976
vioscreen_pantothe
7.364657802000001
vioscreen_pectins
9.070520521
vioscreen_pfa182
26.5275899
vioscreen_pfa183
2.9434791039999997
vioscreen_pfa184
0.000383562
vioscreen_pfa204
0.128219176
vioscreen_pfa205
0.007671233
vioscreen_pfa225
0.001232877
vioscreen_pfa226
0.030821917999999997
vioscreen_pfatot
29.69712115
vioscreen_phenylal
4.170575704
vioscreen_phosphor
1611.197774
vioscreen_phytic
1606.02089
vioscreen_pinitol
0.145863018
vioscreen_potass
5399.046575
vioscreen_procdate
10/28/15
vioscreen_proline
5.719178751
vioscreen_protanim
20.46726108
vioscreen_protein
90.04208048
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
69.56513806
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
601.0
vioscreen_retinol
312.54526969999995
vioscreen_rgrain
3.7672329839999996
vioscreen_ribofla
2.7055337980000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.7329
vioscreen_satoco
0.0
vioscreen_selenium
158.4604987
vioscreen_serine
4.557315523
vioscreen_sfa100
0.095698621
vioscreen_sfa120
0.133561644
vioscreen_sfa140
0.423452006
vioscreen_sfa160
15.14572587
vioscreen_sfa170
0.058356162
vioscreen_sfa180
4.314986221
vioscreen_sfa200
0.456657598
vioscreen_sfa220
0.431671268
vioscreen_sfa40
0.069753427
vioscreen_sfa60
0.02531507
vioscreen_sfa80
0.07843837
vioscreen_sfatot
21.45843857
vioscreen_sodium
5035.636301
vioscreen_sorbitol
1.6407119540000001
vioscreen_srvid
16955.0
vioscreen_starch
114.1469392
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.28599636
vioscreen_sweet_servings
0.04198
vioscreen_tagatose
4.307096131000001
vioscreen_tfa161t
0.014027396999999999
vioscreen_tfa181t
1.3671780519999999
vioscreen_tfa182t
0.257150708
vioscreen_tgrain
7.104601884
vioscreen_thiamin
3.3818366060000002
vioscreen_threonin
3.472931159
vioscreen_time
18.0
vioscreen_totaltfa
1.781808012
vioscreen_totcla
0.018684931999999998
vioscreen_totfolat
862.3951198999999
vioscreen_totsugar
156.68896619999998
vioscreen_tryptoph
0.991342539
vioscreen_tyrosine
2.87728723
vioscreen_user_id
16955.0
vioscreen_v_drkgr
1.345479385
vioscreen_v_orange
2.1298356569999997
vioscreen_v_other
1.8601373540000001
vioscreen_v_potato
0.077369862
vioscreen_v_starcy
0.294904108
vioscreen_v_tomato
0.745972599
vioscreen_v_total
6.45391829
vioscreen_valine
4.441753398
vioscreen_veg5_day
10.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
12.8
vioscreen_visit
1.0
vioscreen_vita_iu
66767.41918
vioscreen_vita_rae
3598.9332189999996
vioscreen_vita_re
6885.319178
vioscreen_vitb12
3.61983559
vioscreen_vitb6
2.9678082189999997
vioscreen_vitc
228.1557363
vioscreen_vitd
2.449506702
vioscreen_vitd2
0.000410959
vioscreen_vitd3
2.4491231
vioscreen_vitd_iu
97.98026809
vioscreen_vite_iu
38.15298587
vioscreen_vitk
751.9714041
vioscreen_water
4933.643836
vioscreen_weight
Not provided
vioscreen_wgrain
3.3373424789999997
vioscreen_whole_grain_servings
3.28995
vioscreen_xylitol
0.07260275
vioscreen_zinc
13.30197453
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily