10317.000023245; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633066
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023245
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23245
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
27.37
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-01-15
collection month
January
collection season
Winter
collection time
13:50
collection_timestamp
2015-01-15 13:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Self-diagnosed
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
30.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
fb45bda196913008335e25fd22eb471f264688421b8d150ab25cad9496e831e53ce573a3fe1547c2781d1d214e9198d5e7b26555335b50dce7cc05647b3dd2eb
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
28.5
level_of_education
Some college or technical school
liver_disease
Self-diagnosed
livingwith
No
longitude
-81.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023245
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
52abc2ea83c08b96
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.548246535
vioscreen_addsugar
12.26038367
vioscreen_adsugtot
11.89210991
vioscreen_age
215.0
vioscreen_alanine
2.0666027330000003
vioscreen_alcohol
0.000876712
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
184.12491440000002
vioscreen_alphtoce
9.610712088
vioscreen_alphtoco
8.931972389
vioscreen_arginine
2.0994516869999997
vioscreen_ash
16.69840941
vioscreen_aspartam
0.0
vioscreen_aspartic
4.087479599
vioscreen_avcarb
64.77112586
vioscreen_bcodeid
Not provided
vioscreen_betacar
1821.507534
vioscreen_betacryp
89.20714897
vioscreen_betaine
9.63528735
vioscreen_betatoco
0.199479445
vioscreen_biochana
0.008575342
vioscreen_bmi
Not provided
vioscreen_caffeine
143.9142123
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.34226999999999996
vioscreen_calcium_servings
1.186
vioscreen_calories
1118.6254279999998
vioscreen_carbo
93.95909675
vioscreen_cholest
259.0516481
vioscreen_choline
320.7020762
vioscreen_clac9t11
0.027178082000000003
vioscreen_clat10c12
0.004109589
vioscreen_copper
1.015616472
vioscreen_coumest
0.10649314800000001
vioscreen_cystine
0.49539728
vioscreen_d_cheese
0.265972608
vioscreen_d_milk
0.07630137099999999
vioscreen_d_tot_soym
0.34227397299999995
vioscreen_d_total
0.34227397299999995
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.125013691
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.089315169
vioscreen_discfat_oil
13.41158899
vioscreen_discfat_sol
13.60361596
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.561835637
vioscreen_f_nj_citmlb
0.528410987
vioscreen_f_nj_other
2.486109569
vioscreen_f_nj_total
3.014520347
vioscreen_f_other
2.486109569
vioscreen_f_total
3.0479448710000003
vioscreen_fat
72.14339148
vioscreen_fiber
29.18860499
vioscreen_fibh2o
10.14747967
vioscreen_fibinso
19.09424765
vioscreen_finished
2/12/15
vioscreen_fish_servings
4.22115
vioscreen_fol_deqv
371.09135269999996
vioscreen_fol_nat
371.09135269999996
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0020273970000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
6.1
vioscreen_fructose
12.52780795
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.027726027
vioscreen_g_total
0.310712339
vioscreen_g_whl
0.28298630399999997
vioscreen_galactos
0.243698622
vioscreen_gammtoco
5.885342197999999
vioscreen_gender
false
vioscreen_genistn
0.05172603
vioscreen_glac
23.86539758
vioscreen_gltc
27.0747378
vioscreen_glucose
13.33665588
vioscreen_glutamic
6.233314159
vioscreen_glycine
1.61167126
vioscreen_glycitn
0.0
vioscreen_grams
2857.611986
vioscreen_hei2010_dairy
2.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.7
vioscreen_hei_drk_g_org_veg_leg
2.5
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.8
vioscreen_hei_score
64.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.8
vioscreen_height
Not provided
vioscreen_histidin
1.0952053959999999
vioscreen_inositol
0.078657537
vioscreen_iron
5.240464804
vioscreen_isoleuc
1.775972884
vioscreen_isomalt
0.0
vioscreen_joules
4680.326370000001
vioscreen_juice_servings
0.06682
vioscreen_lactitol
0.0
vioscreen_lactose
1.283314995
vioscreen_legumes
0.0
vioscreen_leucine
3.07726014
vioscreen_line_gi
145.13113230000002
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2358.3065070000002
vioscreen_lycopene
1273.79863
vioscreen_lysine
2.977150444
vioscreen_m_egg
1.008821921
vioscreen_m_fish_hi
1.9795343269999999
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
2.405452028
vioscreen_m_nutsd
0.061917809000000004
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.000136986
vioscreen_magnes
226.9860659
vioscreen_maltitol
0.0
vioscreen_maltose
0.363972619
vioscreen_mangan
1.8030957369999998
vioscreen_mannitol
0.09271232900000001
vioscreen_methhis3
7.9463011020000005
vioscreen_methion
0.980958787
vioscreen_mfa141
0.030082191
vioscreen_mfa161
2.385287517
vioscreen_mfa181
33.80536976
vioscreen_mfa201
0.440000059
vioscreen_mfa221
0.356493137
vioscreen_mfatot
37.21588988
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.931972389
vioscreen_nccglbr
50.11993793
vioscreen_nccglgr
35.05882117
vioscreen_niacin
12.83928858
vioscreen_niacineq
20.31279564
vioscreen_nitrogen
6.267451707
vioscreen_non_fried_fish_servings
4.22115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.0795614159999998
vioscreen_oxalic
76.80928403
vioscreen_oxalicm
88.68498502
vioscreen_pantothe
6.8353428670000005
vioscreen_pectins
7.289643755
vioscreen_pfa182
8.944521217
vioscreen_pfa183
1.106410865
vioscreen_pfa184
0.081506849
vioscreen_pfa204
0.126328769
vioscreen_pfa205
0.256246593
vioscreen_pfa225
0.096410966
vioscreen_pfa226
0.539342426
vioscreen_pfatot
11.27216529
vioscreen_phenylal
1.7019178419999998
vioscreen_phosphor
681.9616437999999
vioscreen_phytic
480.22452910000004
vioscreen_pinitol
0.0
vioscreen_potass
2885.262329
vioscreen_procdate
10/28/15
vioscreen_proline
1.7639451119999998
vioscreen_protanim
27.98547731
vioscreen_protein
39.26893194
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.28419173
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
562.0
vioscreen_retinol
206.36474740000003
vioscreen_rgrain
0.0
vioscreen_ribofla
1.34016431
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.5146599999999997
vioscreen_satoco
0.0
vioscreen_selenium
46.68948523
vioscreen_serine
1.944849302
vioscreen_sfa100
0.19473971
vioscreen_sfa120
0.212465762
vioscreen_sfa140
1.039013672
vioscreen_sfa160
11.37802734
vioscreen_sfa170
0.04449315
vioscreen_sfa180
2.8731234619999997
vioscreen_sfa200
0.064931509
vioscreen_sfa220
0.035863014
vioscreen_sfa40
0.24021917899999998
vioscreen_sfa60
0.125041094
vioscreen_sfa80
0.085753428
vioscreen_sfatot
16.48759097
vioscreen_sodium
2237.802397
vioscreen_sorbitol
0.082767121
vioscreen_srvid
17138.0
vioscreen_starch
12.28279511
vioscreen_started
2/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
11.920465
vioscreen_sweet_servings
0.28493
vioscreen_tagatose
1.286657548
vioscreen_tfa161t
0.035999998
vioscreen_tfa181t
0.730630117
vioscreen_tfa182t
0.218986302
vioscreen_tgrain
0.227150695
vioscreen_thiamin
0.5532876210000001
vioscreen_threonin
1.6119177409999998
vioscreen_time
19.0
vioscreen_totaltfa
0.992000047
vioscreen_totcla
0.031753425
vioscreen_totfolat
371.09135269999996
vioscreen_totsugar
40.0631234
vioscreen_tryptoph
0.452739726
vioscreen_tyrosine
1.30400006
vioscreen_user_id
17138.0
vioscreen_v_drkgr
0.22624658
vioscreen_v_orange
0.0
vioscreen_v_other
1.286986385
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.266876722
vioscreen_v_total
1.780136986
vioscreen_valine
2.071780855
vioscreen_veg5_day
10.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.6
vioscreen_visit
1.0
vioscreen_vita_iu
3950.865068
vioscreen_vita_rae
369.54952910000003
vioscreen_vita_re
532.7261986000001
vioscreen_vitb12
3.3806573739999997
vioscreen_vitb6
1.847534012
vioscreen_vitc
133.42221750000002
vioscreen_vitd
10.57597255
vioscreen_vitd2
0.0
vioscreen_vitd3
10.57597255
vioscreen_vitd_iu
423.03890199999995
vioscreen_vite_iu
13.30849342
vioscreen_vitk
137.4500321
vioscreen_water
2642.748459
vioscreen_weight
Not provided
vioscreen_wgrain
0.227150695
vioscreen_whole_grain_servings
0.28299
vioscreen_xylitol
0.036794521000000004
vioscreen_zinc
4.568109883
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
81.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)