10317.000030418; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634200
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030418
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030418
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1957.0
bmi
22.38
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
09:15
collection_timestamp
2015-09-09 09:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
76.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
43aab301e6c65aa371882aae7980446700a3d48b1129c50decf490b83a72dafb71fd1e82e2a1c0765491469978dbc7b75b6d7748f52f067e1c7aebd1cf338168
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
50.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-5.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030418
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
3796b9e2113fe87b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.3617534480000002
vioscreen_a_cal
169.28301580000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.632821863999999
vioscreen_addsugar
31.61290668
vioscreen_adsugtot
30.27348031
vioscreen_age
215.0
vioscreen_alanine
5.940356111
vioscreen_alcohol
21.23293022
vioscreen_alcohol_servings
1.36175
vioscreen_alphacar
3254.684589
vioscreen_alphtoce
16.19561617
vioscreen_alphtoco
15.17378398
vioscreen_arginine
6.720712488999999
vioscreen_ash
28.28356432
vioscreen_aspartam
0.0
vioscreen_aspartic
11.48353355
vioscreen_avcarb
146.2508562
vioscreen_bcodeid
Not provided
vioscreen_betacar
17239.19726
vioscreen_betacryp
389.60466610000003
vioscreen_betaine
79.61933326
vioscreen_betatoco
0.29276714600000003
vioscreen_biochana
0.004684931
vioscreen_bmi
Not provided
vioscreen_caffeine
320.1952697
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.8217800000000004
vioscreen_calcium_servings
5.17715
vioscreen_calories
2599.427055
vioscreen_carbo
168.52263480000002
vioscreen_cholest
755.7
vioscreen_choline
774.0173801
vioscreen_clac9t11
0.346465751
vioscreen_clat10c12
0.073753425
vioscreen_copper
2.683698931
vioscreen_coumest
0.203232878
vioscreen_cystine
1.414219352
vioscreen_d_cheese
0.465479435
vioscreen_d_milk
2.961698684
vioscreen_d_tot_soym
3.821780688
vioscreen_d_total
3.821780688
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.25871233
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.5495339590000001
vioscreen_discfat_oil
34.68451413
vioscreen_discfat_sol
86.73214897
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.135150679
vioscreen_f_nj_citmlb
0.129561646
vioscreen_f_nj_other
0.229123301
vioscreen_f_nj_total
0.358684926
vioscreen_f_other
0.229123301
vioscreen_f_total
0.364301373
vioscreen_fat
148.868461
vioscreen_fiber
22.27235659
vioscreen_fibh2o
7.248000053999999
vioscreen_fibinso
15.11210804
vioscreen_finished
9/8/15
vioscreen_fish_servings
4.87596
vioscreen_fol_deqv
473.6626284
vioscreen_fol_nat
445.0904966
vioscreen_fol_syn
16.79249251
vioscreen_formontn
0.0013150689999999999
vioscreen_fried_fish_servings
1.58808
vioscreen_fried_food_servings
0.28493
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.7
vioscreen_fructose
8.821726509
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.2193972229999999
vioscreen_g_total
1.2193972229999999
vioscreen_g_whl
0.0
vioscreen_galactos
0.582493194
vioscreen_gammtoco
8.895232235
vioscreen_gender
false
vioscreen_genistn
0.11635616800000001
vioscreen_glac
50.62558861
vioscreen_gltc
55.63636023
vioscreen_glucose
10.26526046
vioscreen_glutamic
20.84454597
vioscreen_glycine
4.881671393
vioscreen_glycitn
0.010465753000000001
vioscreen_grams
2925.6253420000003
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
10.5
vioscreen_hei2010_fatty_acids
1.3
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.7
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
1.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.0
vioscreen_hei_sodium
2.1
vioscreen_hei_sol_fat_alc_add_sug
6.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.420191767
vioscreen_inositol
0.14958903699999998
vioscreen_iron
13.23827456
vioscreen_isoleuc
5.673315095
vioscreen_isomalt
0.0
vioscreen_joules
10876.00685
vioscreen_juice_servings
0.01121
vioscreen_lactitol
0.0
vioscreen_lactose
42.45455105
vioscreen_legumes
0.0
vioscreen_leucine
9.767396859
vioscreen_line_gi
290.8570848
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
11648.16438
vioscreen_lycopene
1736.9318489999998
vioscreen_lysine
9.359864619
vioscreen_m_egg
1.703835683
vioscreen_m_fish_hi
0.831068483
vioscreen_m_fish_lo
1.947589028
vioscreen_m_frank
0.079150683
vioscreen_m_meat
3.234465633
vioscreen_m_mpf
7.8453425999999995
vioscreen_m_nutsd
1.121315065
vioscreen_m_organ
0.586547935
vioscreen_m_poult
1.166493121
vioscreen_m_soy
0.0027123290000000003
vioscreen_magnes
424.96716610000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.318959025
vioscreen_mangan
2.8967395519999997
vioscreen_mannitol
0.253534249
vioscreen_methhis3
25.10854559
vioscreen_methion
3.028739365
vioscreen_mfa141
0.214602745
vioscreen_mfa161
2.522492876
vioscreen_mfa181
55.298929799999996
vioscreen_mfa201
0.597315038
vioscreen_mfa221
0.13284932
vioscreen_mfatot
59.01183647
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.17378398
vioscreen_nccglbr
109.87904540000001
vioscreen_nccglgr
76.85877033
vioscreen_niacin
26.09643889
vioscreen_niacineq
48.37834974
vioscreen_nitrogen
19.19928698
vioscreen_non_fried_fish_servings
3.2878800000000004
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.796383374
vioscreen_oxalic
363.9270548
vioscreen_oxalicm
369.56267119999995
vioscreen_pantothe
10.74191727
vioscreen_pectins
4.5021089739999995
vioscreen_pfa182
16.12082085
vioscreen_pfa183
2.2338626390000003
vioscreen_pfa184
0.033397259
vioscreen_pfa204
0.317835601
vioscreen_pfa205
0.154246584
vioscreen_pfa225
0.05224658
vioscreen_pfa226
0.324027409
vioscreen_pfatot
19.47210777
vioscreen_phenylal
5.388273558
vioscreen_phosphor
2042.431164
vioscreen_phytic
364.2725599
vioscreen_pinitol
0.0004931509999999999
vioscreen_potass
4697.72911
vioscreen_procdate
10/28/15
vioscreen_proline
7.06369863
vioscreen_protanim
100.838217
vioscreen_protein
119.4586473
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.61509525
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
105.0
vioscreen_retinol
1878.9226030000002
vioscreen_rgrain
1.065726084
vioscreen_ribofla
3.782986408
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8617
vioscreen_satoco
0.0
vioscreen_selenium
162.9344071
vioscreen_serine
5.865616305
vioscreen_sfa100
1.4761917740000001
vioscreen_sfa120
1.7501367859999999
vioscreen_sfa140
5.8695887739999995
vioscreen_sfa160
30.06433273
vioscreen_sfa170
0.23473972699999998
vioscreen_sfa180
13.02937045
vioscreen_sfa200
0.264164399
vioscreen_sfa220
0.23827397600000003
vioscreen_sfa40
1.662191814
vioscreen_sfa60
1.168849245
vioscreen_sfa80
0.9182466690000001
vioscreen_sfatot
57.11476884
vioscreen_sodium
4595.920204999999
vioscreen_sorbitol
0.058849319000000004
vioscreen_srvid
20660.0
vioscreen_starch
32.07890625
vioscreen_started
9/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.61082245
vioscreen_sweet_servings
0.45098
vioscreen_tagatose
3.7755340989999997
vioscreen_tfa161t
0.095780819
vioscreen_tfa181t
3.327095931
vioscreen_tfa182t
0.624027409
vioscreen_tgrain
1.065726084
vioscreen_thiamin
1.478164297
vioscreen_threonin
4.978930999
vioscreen_time
22.0
vioscreen_totaltfa
4.227178203
vioscreen_totcla
0.41868491
vioscreen_totfolat
461.88304789999995
vioscreen_totsugar
98.29095676
vioscreen_tryptoph
1.337726081
vioscreen_tyrosine
4.595040935
vioscreen_user_id
20660.0
vioscreen_v_drkgr
0.869479496
vioscreen_v_orange
0.79339725
vioscreen_v_other
1.9723012430000002
vioscreen_v_potato
0.280383552
vioscreen_v_starcy
0.128602736
vioscreen_v_tomato
0.360027407
vioscreen_v_total
4.4041644369999995
vioscreen_valine
6.574931106
vioscreen_veg5_day
8.9
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
8.8
vioscreen_visit
1.0
vioscreen_vita_iu
38033.96712
vioscreen_vita_rae
3467.369521
vioscreen_vita_re
5055.814726
vioscreen_vitb12
16.82211045
vioscreen_vitb6
2.724328948
vioscreen_vitc
208.8591396
vioscreen_vitd
17.38495826
vioscreen_vitd2
0.0
vioscreen_vitd3
17.38495826
vioscreen_vitd_iu
695.3983304999999
vioscreen_vite_iu
22.58481914
vioscreen_vitk
498.2955051
vioscreen_water
2475.4522260000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.053506850999999994
vioscreen_zinc
17.48071222
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never