10317.000023840; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632699
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023840
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23840
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
21.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-03-23
collection month
March
collection season
Spring
collection time
06:00
collection_timestamp
2015-03-23 06:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Plains
elevation
402.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
d526271c10dcb4c2fc56e6298844a1fc4b8b9dd711c39428d2704eecca4ad72fd545dafa695ac23e68937efada3eaf8a3f99607d9d769e09c373bf47ca08ad20
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
47.1
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-93.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023840
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MN
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
bf8c774ad1b4d75a
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.226958894
vioscreen_a_cal
28.33314962
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.392712402
vioscreen_addsugar
10.95046554
vioscreen_adsugtot
10.65399989
vioscreen_age
215.0
vioscreen_alanine
1.608712141
vioscreen_alcohol
3.5484110789999996
vioscreen_alcohol_servings
0.22696
vioscreen_alphacar
3718.500685
vioscreen_alphtoce
11.1165213
vioscreen_alphtoco
10.28832941
vioscreen_arginine
1.839671179
vioscreen_ash
13.40230228
vioscreen_aspartam
0.0
vioscreen_aspartic
3.39956155
vioscreen_avcarb
74.9906464
vioscreen_bcodeid
Not provided
vioscreen_betacar
22574.54521
vioscreen_betacryp
276.9952055
vioscreen_betaine
75.41466182
vioscreen_betatoco
0.179342442
vioscreen_biochana
0.0030136990000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
272.2226884
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.06195
vioscreen_calcium_servings
1.48115
vioscreen_calories
843.1381848999999
vioscreen_carbo
100.3508027
vioscreen_cholest
391.1885274
vioscreen_choline
437.1808647
vioscreen_clac9t11
0.004684932
vioscreen_clat10c12
0.000328767
vioscreen_copper
0.916520545
vioscreen_coumest
0.073041095
vioscreen_cystine
0.509561617
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.061945207
vioscreen_d_tot_soym
0.061945207
vioscreen_d_total
0.061945207
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.10194520300000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.012547825
vioscreen_discfat_oil
19.09742482
vioscreen_discfat_sol
8.884054607000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000821918
vioscreen_f_citmlb
0.808739733
vioscreen_f_nj_citmlb
0.803780835
vioscreen_f_nj_other
0.8034245740000001
vioscreen_f_nj_total
1.6072054930000002
vioscreen_f_other
0.8034245740000001
vioscreen_f_total
1.61216439
vioscreen_fat
38.49602419
vioscreen_fiber
25.36073951
vioscreen_fibh2o
6.891178162
vioscreen_fibinso
18.5357248
vioscreen_finished
3/22/15
vioscreen_fish_servings
0.57731
vioscreen_fol_deqv
427.3753425
vioscreen_fol_nat
427.3753425
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0020273970000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.2
vioscreen_fructose
16.30821918
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.06860274200000001
vioscreen_g_total
0.138931504
vioscreen_g_whl
0.070328767
vioscreen_galactos
0.09652055699999999
vioscreen_gammtoco
7.362055196
vioscreen_gender
false
vioscreen_genistn
0.027178082000000003
vioscreen_glac
24.58600171
vioscreen_gltc
30.34753585
vioscreen_glucose
16.34194403
vioscreen_glutamic
4.5994792780000004
vioscreen_glycine
1.198356231
vioscreen_glycitn
0.0
vioscreen_grams
2894.394178
vioscreen_hei2010_dairy
0.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.6
vioscreen_hei2010_sea_foods_plant_protiens
2.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.0
vioscreen_hei_score
70.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
0.702821998
vioscreen_inositol
0.107315063
vioscreen_iron
8.076328392999999
vioscreen_isoleuc
1.3889042269999998
vioscreen_isomalt
0.0
vioscreen_joules
3527.6914380000003
vioscreen_juice_servings
0.00995
vioscreen_lactitol
0.0
vioscreen_lactose
0.5493424929999999
vioscreen_legumes
0.0
vioscreen_leucine
2.1511506380000003
vioscreen_line_gi
215.22127569999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
18719.8411
vioscreen_lycopene
1586.033219
vioscreen_lysine
1.9777258469999999
vioscreen_m_egg
2.017287665
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.073726027
vioscreen_m_mpf
0.46391781299999996
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.061232878
vioscreen_m_soy
0.0
vioscreen_magnes
249.45618580000001
vioscreen_maltitol
0.0
vioscreen_maltose
1.3887945309999998
vioscreen_mangan
4.378794213
vioscreen_mannitol
0.330438358
vioscreen_methhis3
1.719424564
vioscreen_methion
0.6799178029999999
vioscreen_mfa141
0.012958903999999999
vioscreen_mfa161
0.748301467
vioscreen_mfa181
16.95400123
vioscreen_mfa201
0.138849316
vioscreen_mfa221
0.080328766
vioscreen_mfatot
17.96561564
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.28832941
vioscreen_nccglbr
56.74593857
vioscreen_nccglgr
39.69210991
vioscreen_niacin
6.8771778679999995
vioscreen_niacineq
13.18177975
vioscreen_nitrogen
4.989698603
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.3283560970000001
vioscreen_oxalic
603.8236728999999
vioscreen_oxalicm
615.4635702
vioscreen_pantothe
4.886958543
vioscreen_pectins
6.289890571
vioscreen_pfa182
7.097288367000001
vioscreen_pfa183
1.121616311
vioscreen_pfa184
0.014246575
vioscreen_pfa204
0.163753426
vioscreen_pfa205
0.048219179
vioscreen_pfa225
0.017068492
vioscreen_pfa226
0.127287669
vioscreen_pfatot
8.608684048999999
vioscreen_phenylal
1.40627408
vioscreen_phosphor
542.0711472999999
vioscreen_phytic
210.0884204
vioscreen_pinitol
0.0
vioscreen_potass
3023.781164
vioscreen_procdate
10/28/15
vioscreen_proline
1.250493131
vioscreen_protanim
16.6476723
vioscreen_protein
31.16016428
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.51246656
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
515.0
vioscreen_retinol
183.0825771
vioscreen_rgrain
0.043890412000000004
vioscreen_ribofla
1.503123328
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.7068800000000004
vioscreen_satoco
0.0
vioscreen_selenium
44.42295591
vioscreen_serine
1.6944384430000001
vioscreen_sfa100
0.01090411
vioscreen_sfa120
0.017534247
vioscreen_sfa140
0.11090411900000001
vioscreen_sfa160
5.946685707
vioscreen_sfa170
0.027260276
vioscreen_sfa180
1.6894521219999998
vioscreen_sfa200
0.073424661
vioscreen_sfa220
0.047972602999999996
vioscreen_sfa40
0.007863013
vioscreen_sfa60
0.004082192
vioscreen_sfa80
0.005205479
vioscreen_sfatot
7.982494114
vioscreen_sodium
1824.569007
vioscreen_sorbitol
0.359616465
vioscreen_srvid
18359.0
vioscreen_starch
10.18273892
vioscreen_started
3/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.41989111
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.003479452
vioscreen_tfa181t
0.504986321
vioscreen_tfa182t
0.075726026
vioscreen_tgrain
0.082219179
vioscreen_thiamin
0.60509585
vioscreen_threonin
1.336959045
vioscreen_time
20.0
vioscreen_totaltfa
0.583452031
vioscreen_totcla
0.005452055
vioscreen_totfolat
427.3753425
vioscreen_totsugar
49.8343536
vioscreen_tryptoph
0.379041154
vioscreen_tyrosine
1.056684938
vioscreen_user_id
18359.0
vioscreen_v_drkgr
1.4206848980000002
vioscreen_v_orange
0.979753468
vioscreen_v_other
2.0775888940000002
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.330328766
vioscreen_v_total
4.80832854
vioscreen_valine
1.605123274
vioscreen_veg5_day
10.8
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
9.6
vioscreen_visit
1.0
vioscreen_vita_iu
41564.62192
vioscreen_vita_rae
2230.774486
vioscreen_vita_re
4278.466781
vioscreen_vitb12
1.6148492680000002
vioscreen_vitb6
1.4954245369999999
vioscreen_vitc
264.4269478
vioscreen_vitd
3.747725813
vioscreen_vitd2
0.0
vioscreen_vitd3
3.747725813
vioscreen_vitd_iu
149.9090325
vioscreen_vite_iu
15.3432858
vioscreen_vitk
806.4919521
vioscreen_water
2719.592123
vioscreen_weight
Not provided
vioscreen_wgrain
0.038328766
vioscreen_whole_grain_servings
0.07032999999999999
vioscreen_xylitol
0.051452051
vioscreen_zinc
3.9423838160000004
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)