American Gut Project; 10317.000023863
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633102
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023863
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23863
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
25.24
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
03/07/2015
collection month
March
collection season
Spring
collection time
09:00
collection_timestamp
2015-03-07 09:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Plains
elevation
272.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
23907cb5df68116c958737200bcc9a27593f4748f708b40f6f2a45a5f05ca9cf9cf9097fce67abf8125566504c9ea65e0dcc456daa9a6a8f1fc866456012d66a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
44.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-93.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023863
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MN
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
8458d5e785133540
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.340575336
vioscreen_a_cal
41.78383455
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.25142605
vioscreen_addsugar
55.63862372
vioscreen_adsugtot
49.21567316
vioscreen_age
215.0
vioscreen_alanine
4.185507411000001
vioscreen_alcohol
5.2332877380000005
vioscreen_alcohol_servings
0.34058
vioscreen_alphacar
1086.8375
vioscreen_alphtoce
8.127395923
vioscreen_alphtoco
7.242604211000001
vioscreen_arginine
4.44964516
vioscreen_ash
22.6042728
vioscreen_aspartam
0.0
vioscreen_aspartic
8.555452028
vioscreen_avcarb
251.4867295
vioscreen_bcodeid
Not provided
vioscreen_betacar
4836.928082
vioscreen_betacryp
226.20787669999999
vioscreen_betaine
180.4101455
vioscreen_betatoco
0.347287656
vioscreen_biochana
0.009863013
vioscreen_bmi
Not provided
vioscreen_caffeine
101.107866
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
4.26279
vioscreen_calcium_servings
5.738569999999999
vioscreen_calories
1994.854966
vioscreen_carbo
278.6699486
vioscreen_cholest
276.80057789999995
vioscreen_choline
472.8072346
vioscreen_clac9t11
0.11753424
vioscreen_clat10c12
0.017342468
vioscreen_copper
1.317452209
vioscreen_coumest
0.021808219
vioscreen_cystine
1.02569856
vioscreen_d_cheese
0.436246564
vioscreen_d_milk
3.2377260810000004
vioscreen_d_tot_soym
4.262794641
vioscreen_d_total
4.262794641
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.32663014
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.5137258869999999
vioscreen_discfat_oil
12.57556453
vioscreen_discfat_sol
32.39071062
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000821918
vioscreen_f_citmlb
1.302246595
vioscreen_f_nj_citmlb
1.298986315
vioscreen_f_nj_other
1.940410959
vioscreen_f_nj_total
3.23947988
vioscreen_f_other
1.940410959
vioscreen_f_total
3.242740328
vioscreen_fat
58.56860552
vioscreen_fiber
27.15424604
vioscreen_fibh2o
7.337151513999999
vioscreen_fibinso
19.86731459
vioscreen_finished
3/7/15
vioscreen_fish_servings
1.33423
vioscreen_fol_deqv
476.4115154
vioscreen_fol_nat
304.8558005
vioscreen_fol_syn
100.8914812
vioscreen_formontn
0.0038082190000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.5
vioscreen_fructose
29.69670644
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.7297535519999998
vioscreen_g_total
3.7080275439999997
vioscreen_g_whl
1.978219145
vioscreen_galactos
1.025342382
vioscreen_gammtoco
7.318109214
vioscreen_gender
false
vioscreen_genistn
0.34994517299999994
vioscreen_glac
115.69436
vioscreen_gltc
128.1361301
vioscreen_glucose
26.71430062
vioscreen_glutamic
18.29128853
vioscreen_glycine
3.407014862
vioscreen_glycitn
0.163671227
vioscreen_grams
3322.681164
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
16.7
vioscreen_hei2010_fatty_acids
1.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.0
vioscreen_hei2010_sea_foods_plant_protiens
3.5
vioscreen_hei2010_sodium
4.3
vioscreen_hei2010_veg
4.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.6
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.3
vioscreen_hei_sat_fat
7.6
vioscreen_hei_score
76.7
vioscreen_hei_sodium
3.4
vioscreen_hei_sol_fat_alc_add_sug
15.9
vioscreen_hei_veg
4.9
vioscreen_hei_whl_grains
3.3
vioscreen_height
Not provided
vioscreen_histidin
2.637452175
vioscreen_inositol
0.20076709899999998
vioscreen_iron
12.37827483
vioscreen_isoleuc
4.3862187630000005
vioscreen_isomalt
0.0
vioscreen_joules
8346.472603
vioscreen_juice_servings
0.00658
vioscreen_lactitol
0.0
vioscreen_lactose
50.25463399
vioscreen_legumes
0.083397267
vioscreen_leucine
7.660409755
vioscreen_line_gi
588.5113442
vioscreen_low_fat_dairy_serving
3.6787099999999997
vioscreen_lutzeax
5084.557192
vioscreen_lycopene
4713.378767
vioscreen_lysine
6.884027183
vioscreen_m_egg
0.586328752
vioscreen_m_fish_hi
0.423178059
vioscreen_m_fish_lo
0.34320547
vioscreen_m_frank
1.531342472
vioscreen_m_meat
1.256493054
vioscreen_m_mpf
4.062822399
vioscreen_m_nutsd
0.20394519100000003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.50860278
vioscreen_m_soy
0.008876712
vioscreen_magnes
392.9408818
vioscreen_maltitol
0.0
vioscreen_maltose
2.741753398
vioscreen_mangan
4.856931587
vioscreen_mannitol
0.767561487
vioscreen_methhis3
13.98583449
vioscreen_methion
2.241589021
vioscreen_mfa141
0.134356167
vioscreen_mfa161
1.054959065
vioscreen_mfa181
19.06109937
vioscreen_mfa201
0.22632870600000002
vioscreen_mfa221
0.07112329
vioscreen_mfatot
20.74010996
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
7.242604211000001
vioscreen_nccglbr
186.55428080000002
vioscreen_nccglgr
130.4872753
vioscreen_niacin
18.60660317
vioscreen_niacineq
35.96696276
vioscreen_nitrogen
15.076573199999999
vioscreen_non_fried_fish_servings
1.33423
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.481726074
vioscreen_oxalic
276.0436002
vioscreen_oxalicm
272.7205479
vioscreen_pantothe
7.592519932999999
vioscreen_pectins
5.027205292
vioscreen_pfa182
8.074412056
vioscreen_pfa183
1.233506796
vioscreen_pfa184
0.016054796
vioscreen_pfa204
0.10926027699999999
vioscreen_pfa205
0.06454794900000001
vioscreen_pfa225
0.031643836
vioscreen_pfa226
0.136986301
vioscreen_pfatot
9.729807897999999
vioscreen_phenylal
4.331780755
vioscreen_phosphor
1829.794007
vioscreen_phytic
699.7753852999999
vioscreen_pinitol
0.018520549
vioscreen_potass
4244.772603
vioscreen_procdate
10/28/15
vioscreen_proline
6.759644558
vioscreen_protanim
70.45819242
vioscreen_protein
94.06447988
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.59659942
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
539.0
vioscreen_retinol
688.3351884
vioscreen_rgrain
1.953643882
vioscreen_ribofla
2.9998354560000005
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.31463
vioscreen_satoco
0.0
vioscreen_selenium
123.9305223
vioscreen_serine
4.677013993
vioscreen_sfa100
0.622575316
vioscreen_sfa120
1.075232937
vioscreen_sfa140
2.4282467359999997
vioscreen_sfa160
11.63482315
vioscreen_sfa170
0.141150676
vioscreen_sfa180
4.9124655530000005
vioscreen_sfa200
0.10394519099999999
vioscreen_sfa220
0.066136985
vioscreen_sfa40
0.617780795
vioscreen_sfa60
0.38156169700000003
vioscreen_sfa80
0.32413698
vioscreen_sfatot
22.66087329
vioscreen_sodium
3217.8441780000003
vioscreen_sorbitol
1.241890267
vioscreen_srvid
17230.0
vioscreen_starch
74.08227205
vioscreen_started
2/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.26153146
vioscreen_sweet_servings
0.20995
vioscreen_tagatose
4.882876712
vioscreen_tfa161t
0.039424658
vioscreen_tfa181t
1.7204932640000001
vioscreen_tfa182t
0.273150656
vioscreen_tgrain
3.9056978410000003
vioscreen_thiamin
1.450548146
vioscreen_threonin
3.723644183
vioscreen_time
10780.0
vioscreen_totaltfa
2.085177821
vioscreen_totcla
0.135917799
vioscreen_totfolat
405.7471318
vioscreen_totsugar
157.6759846
vioscreen_tryptoph
1.042931544
vioscreen_tyrosine
3.6319730580000003
vioscreen_user_id
17230.0
vioscreen_v_drkgr
0.259315052
vioscreen_v_orange
0.20161644899999998
vioscreen_v_other
0.5209862279999999
vioscreen_v_potato
0.595917835
vioscreen_v_starcy
0.306767127
vioscreen_v_tomato
0.198876702
vioscreen_v_total
2.083370177
vioscreen_valine
5.276027397
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
11443.830820000001
vioscreen_vita_rae
1146.124229
vioscreen_vita_re
1603.90976
vioscreen_vitb12
7.5624384629999994
vioscreen_vitb6
2.364547771
vioscreen_vitc
179.82328769999998
vioscreen_vitd
13.57068707
vioscreen_vitd2
0.000684932
vioscreen_vitd3
13.57005699
vioscreen_vitd_iu
542.8274829
vioscreen_vite_iu
10.76085188
vioscreen_vitk
202.68369009999998
vioscreen_water
2879.909247
vioscreen_weight
Not provided
vioscreen_wgrain
1.952027538
vioscreen_whole_grain_servings
1.97822
vioscreen_xylitol
0.05602741
vioscreen_zinc
13.38528601
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily