American Gut Project; 10317.000031298
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634287
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031298
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031298
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
22.71
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/03/2015
collection month
August
collection season
Summer
collection time
07:50
collection_timestamp
2015-08-03 07:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1664.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
40a376901b8b7cbf4b7ad00648ec72b77812c4d7ccc571ca290a742495815a13d5604db0f905bb0e551e5b746138e68e8212dbb20d9b3176fad5b8a58dd7fec5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.2
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Daily
poultry_frequency
Daily
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031298
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
1343e0d9099f092d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.001232877
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.7628498230000003
vioscreen_addsugar
21.95153307
vioscreen_adsugtot
14.36071142
vioscreen_age
215.0
vioscreen_alanine
5.1413423719999995
vioscreen_alcohol
0.006246575
vioscreen_alcohol_servings
0.00123
vioscreen_alphacar
954.239726
vioscreen_alphtoce
27.43005405
vioscreen_alphtoco
19.58013565
vioscreen_arginine
6.64668437
vioscreen_ash
18.40227419
vioscreen_aspartam
0.0
vioscreen_aspartic
9.964959466
vioscreen_avcarb
166.9954623
vioscreen_bcodeid
Not provided
vioscreen_betacar
12266.19178
vioscreen_betacryp
95.4390625
vioscreen_betaine
99.44768836
vioscreen_betatoco
0.368465727
vioscreen_biochana
0.008739726
vioscreen_bmi
Not provided
vioscreen_caffeine
22.50002676
vioscreen_calcium
true
vioscreen_calcium_avg
1000.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.20784
vioscreen_calcium_servings
2.22608
vioscreen_calories
1825.321233
vioscreen_carbo
196.0953553
vioscreen_cholest
314.92887410000003
vioscreen_choline
439.42846749999995
vioscreen_clac9t11
0.0420274
vioscreen_clat10c12
0.011479452
vioscreen_copper
1.747616452
vioscreen_coumest
0.08046575
vioscreen_cystine
1.3189040090000002
vioscreen_d_cheese
0.001835616
vioscreen_d_milk
0.178493155
vioscreen_d_tot_soym
0.207835618
vioscreen_d_total
0.207835618
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.144877395
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.3264109989999997
vioscreen_discfat_oil
39.35397046
vioscreen_discfat_sol
15.02060279
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0015616439999999998
vioscreen_f_citmlb
0.31178083
vioscreen_f_nj_citmlb
0.19668493399999998
vioscreen_f_nj_other
2.038246636
vioscreen_f_nj_total
2.2349315069999998
vioscreen_f_other
2.145671353
vioscreen_f_total
2.457424718
vioscreen_fat
80.10901113
vioscreen_fiber
28.75775899
vioscreen_fibh2o
7.980439318999999
vioscreen_fibinso
20.84745024
vioscreen_finished
8/3/15
vioscreen_fish_servings
3.88365
vioscreen_fol_deqv
641.2497003
vioscreen_fol_nat
332.95678510000005
vioscreen_fol_syn
181.355244
vioscreen_formontn
0.0027397259999999996
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.3
vioscreen_frtsumm
4.9
vioscreen_fructose
23.86767177
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.575287618
vioscreen_g_total
3.32421875
vioscreen_g_whl
2.748931467
vioscreen_galactos
0.120082186
vioscreen_gammtoco
15.18684985
vioscreen_gender
false
vioscreen_genistn
6.596384712000001
vioscreen_glac
72.73177975
vioscreen_gltc
82.24681614
vioscreen_glucose
25.48430009
vioscreen_glutamic
16.06427654
vioscreen_glycine
4.652712302
vioscreen_glycitn
1.16520553
vioscreen_grams
2379.366438
vioscreen_hei2010_dairy
0.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.6
vioscreen_hei_score
80.2
vioscreen_hei_sodium
2.7
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.696274013
vioscreen_inositol
0.135671234
vioscreen_iron
15.35643862
vioscreen_isoleuc
4.386465245
vioscreen_isomalt
0.0
vioscreen_joules
7637.134247
vioscreen_juice_servings
0.4451
vioscreen_lactitol
0.0
vioscreen_lactose
0.564109572
vioscreen_legumes
0.016438356
vioscreen_leucine
7.24871174
vioscreen_line_gi
355.66772260000005
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15194.21781
vioscreen_lycopene
1502.36387
vioscreen_lysine
6.921039571000001
vioscreen_m_egg
0.8250137120000001
vioscreen_m_fish_hi
1.36139727
vioscreen_m_fish_lo
0.851753465
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.588849295
vioscreen_m_mpf
6.683917487
vioscreen_m_nutsd
2.291698717
vioscreen_m_organ
0.0
vioscreen_m_poult
3.860630485
vioscreen_m_soy
0.161698631
vioscreen_magnes
481.3235445
vioscreen_maltitol
0.0
vioscreen_maltose
2.085452229
vioscreen_mangan
5.287808687
vioscreen_mannitol
0.20232878399999998
vioscreen_methhis3
25.38800032
vioscreen_methion
2.217726114
vioscreen_mfa141
0.01750685
vioscreen_mfa161
0.943369826
vioscreen_mfa181
31.88714683
vioscreen_mfa201
0.532712335
vioscreen_mfa221
0.220958929
vioscreen_mfatot
33.69617134
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.54693252
vioscreen_nccglbr
139.2161601
vioscreen_nccglgr
97.36597817
vioscreen_niacin
29.938003000000002
vioscreen_niacineq
48.78271618
vioscreen_nitrogen
15.89665828
vioscreen_non_fried_fish_servings
3.88365
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.8657808489999996
vioscreen_oxalic
781.6932363
vioscreen_oxalicm
837.9099315000001
vioscreen_pantothe
8.022218135
vioscreen_pectins
5.034219151
vioscreen_pfa182
18.12178403
vioscreen_pfa183
2.1374247509999997
vioscreen_pfa184
0.050082194000000003
vioscreen_pfa204
0.26254792899999996
vioscreen_pfa205
0.176493167
vioscreen_pfa225
0.091945209
vioscreen_pfa226
0.41095890399999996
vioscreen_pfatot
21.36276621
vioscreen_phenylal
4.209315135
vioscreen_phosphor
1325.117551
vioscreen_phytic
999.4681507000001
vioscreen_pinitol
0.021808217999999997
vioscreen_potass
3443.9407530000003
vioscreen_procdate
10/28/15
vioscreen_proline
4.2495344610000005
vioscreen_protanim
59.32367295
vioscreen_protein
96.79638271
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.47331978
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
238.0
vioscreen_retinol
393.7432363
vioscreen_rgrain
0.583917822
vioscreen_ribofla
1.720136919
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.61362
vioscreen_satoco
11.18495893
vioscreen_selenium
153.08642980000002
vioscreen_serine
4.372849556
vioscreen_sfa100
0.220164385
vioscreen_sfa120
1.330821834
vioscreen_sfa140
1.106903912
vioscreen_sfa160
10.6423293
vioscreen_sfa170
0.061534244
vioscreen_sfa180
3.91443841
vioscreen_sfa200
0.250849329
vioscreen_sfa220
0.388602771
vioscreen_sfa40
0.161561647
vioscreen_sfa60
0.103643841
vioscreen_sfa80
0.140657535
vioscreen_sfatot
18.60435841
vioscreen_sodium
3103.22774
vioscreen_sorbitol
1.316739686
vioscreen_srvid
20297.0
vioscreen_starch
72.65780179999999
vioscreen_started
8/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.11323175
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
0.113534243
vioscreen_tfa161t
0.01539726
vioscreen_tfa181t
2.780684965
vioscreen_tfa182t
0.41216439
vioscreen_tgrain
3.70260294
vioscreen_thiamin
1.202876679
vioscreen_threonin
3.850054514
vioscreen_time
21.0
vioscreen_totaltfa
3.218027611
vioscreen_totcla
0.054684934000000004
vioscreen_totfolat
514.3121575
vioscreen_totsugar
72.91199165
vioscreen_tryptoph
1.131808346
vioscreen_tyrosine
3.295862653
vioscreen_user_id
20297.0
vioscreen_v_drkgr
0.996164484
vioscreen_v_orange
0.257972613
vioscreen_v_other
0.77336986
vioscreen_v_potato
0.197178086
vioscreen_v_starcy
0.253068501
vioscreen_v_tomato
0.142273973
vioscreen_v_total
2.620082071
vioscreen_valine
4.7801369860000005
vioscreen_veg5_day
4.9
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.2
vioscreen_visit
1.0
vioscreen_vita_iu
22629.23562
vioscreen_vita_rae
1459.661644
vioscreen_vita_re
2525.582534
vioscreen_vitb12
5.680191165
vioscreen_vitb6
3.299944818
vioscreen_vitc
108.1184932
vioscreen_vitd
9.417452376
vioscreen_vitd2
0.589150708
vioscreen_vitd3
8.828356432
vioscreen_vitd_iu
376.698095
vioscreen_vite_iu
32.88454356
vioscreen_vitk
593.4127997
vioscreen_water
1998.4587329999997
vioscreen_weight
Not provided
vioscreen_wgrain
3.118685119
vioscreen_whole_grain_servings
2.74893
vioscreen_xylitol
0.050630145999999994
vioscreen_zinc
13.1135381
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily