American Gut Project; 10317.000030103
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634118
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030103
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
20s
age years
25.0
age_corrected
25.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030103
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
Self-diagnosed
autoimmune
I do not have this condition
birth year
1990.0
bmi
25.18
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/07/2015
collection month
August
collection season
Summer
collection time
13:55
collection_timestamp
2015-08-07 13:55
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Hong Kong
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
65.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
176.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
95def4b5f8ec9ac70c9d31aadaff98296b6f6601b6019afb1dff16268be92b9f79eaeed78ed2bb90d613960da26115d775e4bc19f043fef66f73e70d9a67bdec
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past 3 months
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.2
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030103
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
3a7310e80dfaa0d9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.157260278
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
17.04005378
vioscreen_addsugar
73.21391802
vioscreen_adsugtot
69.99643622
vioscreen_age
215.0
vioscreen_alanine
6.587287966
vioscreen_alcohol
2.4244931569999997
vioscreen_alcohol_servings
0.15725999999999998
vioscreen_alphacar
217.9997432
vioscreen_alphtoce
15.118820900000001
vioscreen_alphtoco
14.26797143
vioscreen_arginine
6.111944831000001
vioscreen_ash
35.37643943
vioscreen_aspartam
0.0
vioscreen_aspartic
12.91923427
vioscreen_avcarb
231.74375
vioscreen_bcodeid
Not provided
vioscreen_betacar
2526.880651
vioscreen_betacryp
61.40164812
vioscreen_betaine
34.94183166
vioscreen_betatoco
0.18353422
vioscreen_biochana
0.011260276000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
0.49383561600000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
8.16019
vioscreen_calcium_servings
9.6563
vioscreen_calories
3111.180479
vioscreen_carbo
244.94227310000002
vioscreen_cholest
874.3075342
vioscreen_choline
922.8366437999999
vioscreen_clac9t11
0.432739676
vioscreen_clat10c12
0.072191782
vioscreen_copper
2.63506846
vioscreen_coumest
0.06928767400000001
vioscreen_cystine
1.524410885
vioscreen_d_cheese
0.071917808
vioscreen_d_milk
5.089479546000001
vioscreen_d_tot_soym
8.160191701
vioscreen_d_total
8.160191701
vioscreen_d_yogurt
2.998794681
vioscreen_daidzein
0.158027409
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.8714796930000002
vioscreen_discfat_oil
46.17608091
vioscreen_discfat_sol
96.48032962
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
0.212465762
vioscreen_f_nj_citmlb
0.187698615
vioscreen_f_nj_other
1.095095951
vioscreen_f_nj_total
1.282794524
vioscreen_f_other
1.095095951
vioscreen_f_total
1.3075615870000001
vioscreen_fat
177.0051477
vioscreen_fiber
13.19882144
vioscreen_fibh2o
3.817451373
vioscreen_fibinso
9.402137067
vioscreen_finished
8/6/15
vioscreen_fish_servings
5.89635
vioscreen_fol_deqv
468.12247429999996
vioscreen_fol_nat
450.03660099999996
vioscreen_fol_syn
10.64065711
vioscreen_formontn
0.0009589039999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.6
vioscreen_fructose
11.89035611
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.5494246389999999
vioscreen_g_total
0.615205488
vioscreen_g_whl
0.065780823
vioscreen_galactos
3.716219298
vioscreen_gammtoco
7.552739057
vioscreen_gender
false
vioscreen_genistn
0.170136982
vioscreen_glac
74.90476777
vioscreen_gltc
76.95673694
vioscreen_glucose
14.55800112
vioscreen_glutamic
26.10665668
vioscreen_glycine
4.60901414
vioscreen_glycitn
0.026465752999999998
vioscreen_grams
6154.535615999999
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
8.3
vioscreen_hei2010_fatty_acids
1.7
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
2.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
58.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.5
vioscreen_hei2010_veg
3.2
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
1.1
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
54.9
vioscreen_hei_sodium
4.4
vioscreen_hei_sol_fat_alc_add_sug
8.2
vioscreen_hei_veg
3.2
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
3.918602847
vioscreen_inositol
0.09476712400000001
vioscreen_iron
8.506821222000001
vioscreen_isoleuc
7.126438757000001
vioscreen_isomalt
0.0
vioscreen_joules
13017.18356
vioscreen_juice_servings
0.049510000000000005
vioscreen_lactitol
0.0
vioscreen_lactose
106.3495077
vioscreen_legumes
0.00460274
vioscreen_leucine
12.61367188
vioscreen_line_gi
364.09755989999996
vioscreen_low_fat_dairy_serving
2.99879
vioscreen_lutzeax
2984.915068
vioscreen_lycopene
6267.4787670000005
vioscreen_lysine
11.73958824
vioscreen_m_egg
2.3872603740000002
vioscreen_m_fish_hi
3.360082339
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.652356124
vioscreen_m_meat
0.562191772
vioscreen_m_mpf
5.68934276
vioscreen_m_nutsd
0.016657533999999998
vioscreen_m_organ
0.586547935
vioscreen_m_poult
0.528136956
vioscreen_m_soy
0.000767123
vioscreen_magnes
439.28052230000003
vioscreen_maltitol
0.0
vioscreen_maltose
0.783369843
vioscreen_mangan
1.941068299
vioscreen_mannitol
0.204465746
vioscreen_methhis3
16.95457513
vioscreen_methion
3.8835887330000003
vioscreen_mfa141
0.044328768
vioscreen_mfa161
2.975780916
vioscreen_mfa181
68.34151327
vioscreen_mfa201
0.8638082429999999
vioscreen_mfa221
0.654191736
vioscreen_mfatot
73.11131207
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
14.26797143
vioscreen_nccglbr
132.4100278
vioscreen_nccglgr
92.60543664
vioscreen_niacin
20.02838453
vioscreen_niacineq
44.17791631
vioscreen_nitrogen
21.90531625
vioscreen_non_fried_fish_servings
5.89635
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.379507572
vioscreen_oxalic
102.9635702
vioscreen_oxalicm
81.56674872
vioscreen_pantothe
14.46364378
vioscreen_pectins
3.270985726
vioscreen_pfa182
16.88474021
vioscreen_pfa183
2.6668216240000002
vioscreen_pfa184
0.145726034
vioscreen_pfa204
0.355890394
vioscreen_pfa205
0.448109582
vioscreen_pfa225
0.17213698100000002
vioscreen_pfa226
0.9470410490000001
vioscreen_pfatot
21.87035665
vioscreen_phenylal
6.884986355
vioscreen_phosphor
2878.078082
vioscreen_phytic
272.68627999999995
vioscreen_pinitol
0.0017260270000000002
vioscreen_potass
5474.0054789999995
vioscreen_procdate
10/28/15
vioscreen_proline
10.88967118
vioscreen_protanim
129.9166845
vioscreen_protein
138.5258562
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
8.556163046
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
226.0
vioscreen_retinol
2232.252226
vioscreen_rgrain
0.40956161700000004
vioscreen_ribofla
5.190465472
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.41107
vioscreen_satoco
0.0
vioscreen_selenium
179.8615368
vioscreen_serine
7.828383856
vioscreen_sfa100
2.039671179
vioscreen_sfa120
2.1147669959999997
vioscreen_sfa140
7.643122592
vioscreen_sfa160
35.00232502
vioscreen_sfa170
0.283863015
vioscreen_sfa180
13.71646511
vioscreen_sfa200
0.259589041
vioscreen_sfa220
0.10210958
vioscreen_sfa40
2.3163562509999998
vioscreen_sfa60
1.7600000669999998
vioscreen_sfa80
1.4336164919999999
vioscreen_sfatot
66.9492027
vioscreen_sodium
4690.350685
vioscreen_sorbitol
0.085808224
vioscreen_srvid
20333.0
vioscreen_starch
17.82627221
vioscreen_started
8/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
69.39827697
vioscreen_sweet_servings
0.07671
vioscreen_tagatose
21.66145254
vioscreen_tfa161t
0.049972602000000005
vioscreen_tfa181t
3.041506582
vioscreen_tfa182t
0.738191788
vioscreen_tgrain
0.545753416
vioscreen_thiamin
1.550766869
vioscreen_threonin
5.979178484
vioscreen_time
16.0
vioscreen_totaltfa
4.16939714
vioscreen_totcla
0.505753358
vioscreen_totfolat
460.6771404
vioscreen_totsugar
209.1669735
vioscreen_tryptoph
1.452493244
vioscreen_tyrosine
6.080356377999999
vioscreen_user_id
20333.0
vioscreen_v_drkgr
0.241178079
vioscreen_v_orange
0.022054795
vioscreen_v_other
1.08123286
vioscreen_v_potato
0.185561632
vioscreen_v_starcy
0.009369863
vioscreen_v_tomato
0.611862977
vioscreen_v_total
2.151451968
vioscreen_valine
9.075260194
vioscreen_veg5_day
5.8
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.3
vioscreen_visit
1.0
vioscreen_vita_iu
11883.5
vioscreen_vita_rae
2454.470205
vioscreen_vita_re
2676.685274
vioscreen_vitb12
22.40046688
vioscreen_vitb6
2.601123549
vioscreen_vitc
92.62650899
vioscreen_vitd
33.87418932
vioscreen_vitd2
0.0013698629999999998
vioscreen_vitd3
33.87281946
vioscreen_vitd_iu
1354.9675730000001
vioscreen_vite_iu
21.23934477
vioscreen_vitk
144.5870612
vioscreen_water
5571.531849
vioscreen_weight
Not provided
vioscreen_wgrain
0.136191778
vioscreen_whole_grain_servings
0.06577999999999999
vioscreen_xylitol
0.018821917
vioscreen_zinc
16.77460135
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
78.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)