American Gut Project; 10317.000029448
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634042
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029448
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29448
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Self-diagnosed
birth year
1971.0
bmi
19.75
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-22
collection month
July
collection season
Summer
collection time
10:00
collection_timestamp
2015-07-22 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Poland
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
0092f28e4ad0962f08ef40d73916ef8e059299d22214940f230786546b8070bd1a7b3c256f7939070543d52f2b70d6884b8d32de7e3a389baf41bb2a95c6bc89
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by an alternative medicine practitioner
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
Not provided
level_of_education
Some college or technical school
liver_disease
Diagnosed by an alternative medicine practitioner
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029448
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d23582ac51d6bee3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.511150705
vioscreen_a_cal
63.81339897
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.546356118
vioscreen_addsugar
4.648328473
vioscreen_adsugtot
4.219150658
vioscreen_age
215.0
vioscreen_alanine
6.477917647999999
vioscreen_alcohol
7.991890518
vioscreen_alcohol_servings
0.51115
vioscreen_alphacar
2826.9172949999997
vioscreen_alphtoce
17.71912457
vioscreen_alphtoco
16.5979733
vioscreen_arginine
6.7990140729999995
vioscreen_ash
20.32849422
vioscreen_aspartam
0.0
vioscreen_aspartic
11.05498515
vioscreen_avcarb
150.321661
vioscreen_bcodeid
Not provided
vioscreen_betacar
11134.80342
vioscreen_betacryp
22.70799979
vioscreen_betaine
125.76776540000002
vioscreen_betatoco
0.31887669
vioscreen_biochana
0.0004931509999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
355.0053724
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.04315
vioscreen_calcium_servings
1.0470700000000002
vioscreen_calories
2036.582363
vioscreen_carbo
168.43755349999998
vioscreen_cholest
212.57887409999998
vioscreen_choline
405.2045377
vioscreen_clac9t11
0.018328767
vioscreen_clat10c12
0.004356164
vioscreen_copper
1.096000023
vioscreen_coumest
0.266109582
vioscreen_cystine
1.376739669
vioscreen_d_cheese
0.014794521000000001
vioscreen_d_milk
0.027835616
vioscreen_d_tot_soym
0.043150685
vioscreen_d_total
0.043150685
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.280547928
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.1142742
vioscreen_discfat_oil
74.56728917
vioscreen_discfat_sol
14.90895896
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.049397257
vioscreen_f_nj_citmlb
0.007123287
vioscreen_f_nj_other
0.057534247000000004
vioscreen_f_nj_total
0.064657535
vioscreen_f_other
0.057534247000000004
vioscreen_f_total
0.106904111
vioscreen_fat
97.17246361
vioscreen_fiber
18.11876605
vioscreen_fibh2o
7.100794627999999
vioscreen_fibinso
11.07695915
vioscreen_finished
6/28/15
vioscreen_fish_servings
20.94827
vioscreen_fol_deqv
358.45809080000004
vioscreen_fol_nat
178.2241652
vioscreen_fol_syn
106.0781357
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.2
vioscreen_fructose
2.639534394
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
6.56983559
vioscreen_g_total
6.783287404
vioscreen_g_whl
0.213452065
vioscreen_galactos
0.11027397300000001
vioscreen_gammtoco
9.704767097000001
vioscreen_gender
false
vioscreen_genistn
0.09443836
vioscreen_glac
90.69023973
vioscreen_gltc
96.96100171
vioscreen_glucose
2.792356225
vioscreen_glutamic
17.97802734
vioscreen_glycine
5.275315042
vioscreen_glycitn
0.000356164
vioscreen_grams
3442.753767
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.3
vioscreen_hei2010_greens_beans
4.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
4.3
vioscreen_hei2010_score
55.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.9
vioscreen_hei2010_veg
4.0
vioscreen_hei2010_whole_fruit
0.4
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.3
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
0.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
65.9
vioscreen_hei_sodium
0.7
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
4.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
3.112109375
vioscreen_inositol
0.042493149
vioscreen_iron
11.38701306
vioscreen_isoleuc
4.9830683460000005
vioscreen_isomalt
0.0
vioscreen_joules
8521.059589
vioscreen_juice_servings
0.08452
vioscreen_lactitol
0.0
vioscreen_lactose
0.343534245
vioscreen_legumes
0.0
vioscreen_leucine
8.848054902000001
vioscreen_line_gi
393.4653682
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4698.830479
vioscreen_lycopene
44.00213774
vioscreen_lysine
9.092356726
vioscreen_m_egg
0.063232877
vioscreen_m_fish_hi
6.794274401
vioscreen_m_fish_lo
5.143999826
vioscreen_m_frank
0.0
vioscreen_m_meat
0.311369846
vioscreen_m_mpf
12.24904083
vioscreen_m_nutsd
0.043835615999999994
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.001123288
vioscreen_magnes
336.28000860000003
vioscreen_maltitol
0.0
vioscreen_maltose
1.404493191
vioscreen_mangan
3.741315283
vioscreen_mannitol
0.19252056
vioscreen_methhis3
33.1279725
vioscreen_methion
3.078849395
vioscreen_mfa141
0.013780821
vioscreen_mfa161
1.7111232809999999
vioscreen_mfa181
52.12061216
vioscreen_mfa201
1.120876783
vioscreen_mfa221
1.007232833
vioscreen_mfatot
56.19885488
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.5979733
vioscreen_nccglbr
139.73872
vioscreen_nccglgr
97.74208048
vioscreen_niacin
36.2722469
vioscreen_niacineq
57.19065711
vioscreen_nitrogen
17.78336901
vioscreen_non_fried_fish_servings
20.94827
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.941205586000001
vioscreen_oxalic
225.9547731
vioscreen_oxalicm
216.66915669999997
vioscreen_pantothe
7.46416417
vioscreen_pectins
2.327506789
vioscreen_pfa182
14.59764555
vioscreen_pfa183
1.8814795930000001
vioscreen_pfa184
0.238958907
vioscreen_pfa204
0.177808202
vioscreen_pfa205
0.7961644
vioscreen_pfa225
0.289041117
vioscreen_pfa226
1.737123421
vioscreen_pfatot
19.98901434
vioscreen_phenylal
4.536520762
vioscreen_phosphor
1386.594521
vioscreen_phytic
571.0620719
vioscreen_pinitol
0.0
vioscreen_potass
3113.453767
vioscreen_procdate
10/28/15
vioscreen_proline
4.569561684
vioscreen_protanim
88.92334118
vioscreen_protein
110.25194779999998
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.3298895
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
349.0
vioscreen_retinol
168.1082513
vioscreen_rgrain
5.228219312
vioscreen_ribofla
1.5687398000000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.051320000000000005
vioscreen_satoco
0.0
vioscreen_selenium
200.8341396
vioscreen_serine
4.716301571
vioscreen_sfa100
0.012465753000000001
vioscreen_sfa120
0.022712329
vioscreen_sfa140
0.659753418
vioscreen_sfa160
11.68517899
vioscreen_sfa170
0.055369861
vioscreen_sfa180
2.744273899
vioscreen_sfa200
0.327287669
vioscreen_sfa220
0.144602736
vioscreen_sfa40
0.013041097
vioscreen_sfa60
0.006
vioscreen_sfa80
0.002191781
vioscreen_sfatot
15.80969874
vioscreen_sodium
3906.530479
vioscreen_sorbitol
0.040794519
vioscreen_srvid
20003.0
vioscreen_starch
111.8257705
vioscreen_started
6/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
6.960766936000001
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.004219178
vioscreen_tfa161t
0.038438355
vioscreen_tfa181t
0.382931519
vioscreen_tfa182t
0.158794508
vioscreen_tgrain
7.16471265
vioscreen_thiamin
1.386054805
vioscreen_threonin
4.704466101
vioscreen_time
15.0
vioscreen_totaltfa
0.575945209
vioscreen_totcla
0.023808221
vioscreen_totfolat
284.3021618
vioscreen_totsugar
14.26183514
vioscreen_tryptoph
1.255589065
vioscreen_tyrosine
3.683287738
vioscreen_user_id
20003.0
vioscreen_v_drkgr
0.363561635
vioscreen_v_orange
0.711917825
vioscreen_v_other
0.712876746
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.009506849
vioscreen_v_total
1.7978629330000002
vioscreen_valine
5.718685119
vioscreen_veg5_day
3.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
3.6
vioscreen_visit
1.0
vioscreen_vita_iu
21492.35205
vioscreen_vita_rae
1214.742894
vioscreen_vita_re
2261.378082
vioscreen_vitb12
10.71016428
vioscreen_vitb6
2.56328727
vioscreen_vitc
56.52670698
vioscreen_vitd
33.2299711
vioscreen_vitd2
0.006520548
vioscreen_vitd3
33.22345355
vioscreen_vitd_iu
1329.198844
vioscreen_vite_iu
24.73752943
vioscreen_vitk
229.03334759999998
vioscreen_water
3061.5102739999998
vioscreen_weight
Not provided
vioscreen_wgrain
1.936739652
vioscreen_whole_grain_servings
0.21345
vioscreen_xylitol
0.022136986
vioscreen_zinc
6.69717934
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never