American Gut Project; 10317.000028221
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633943
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028221
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
28221
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
17.97
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-26
collection month
August
collection season
Summer
collection time
09:30
collection_timestamp
2015-08-26 09:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
46.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
96b53acb5c3d1383a84a56c231022c5ae8b9de2ed18e628a8c98c85fd1c2877d4079b567e2ad1b68372855d1afb1ce6c7943b1f7dca0679265c1f7b3edc5c39d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
57.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028221
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Daily
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
8d71ae1d74d34047
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.5919726230000002
vioscreen_a_cal
194.7526327
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.299780608
vioscreen_addsugar
40.87062554
vioscreen_adsugtot
35.94638271
vioscreen_age
215.0
vioscreen_alanine
3.213233091
vioscreen_alcohol
24.37197132
vioscreen_alcohol_servings
1.59197
vioscreen_alphacar
1163.775171
vioscreen_alphtoce
10.85649213
vioscreen_alphtoco
9.822493713
vioscreen_arginine
3.6738903310000004
vioscreen_ash
24.23958958
vioscreen_aspartam
0.0
vioscreen_aspartic
6.158302787999999
vioscreen_avcarb
258.3988014
vioscreen_bcodeid
Not provided
vioscreen_betacar
8078.235616
vioscreen_betacryp
280.0438784
vioscreen_betaine
153.6849101
vioscreen_betatoco
0.326602779
vioscreen_biochana
0.008739726
vioscreen_bmi
Not provided
vioscreen_caffeine
551.2413955
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.90625
vioscreen_calcium_servings
2.86899
vioscreen_calories
1968.8022260000002
vioscreen_carbo
281.5872432
vioscreen_cholest
164.9041524
vioscreen_choline
344.48882710000004
vioscreen_clac9t11
0.044602742
vioscreen_clat10c12
0.007835615
vioscreen_copper
1.652438396
vioscreen_coumest
0.35613696
vioscreen_cystine
0.848849195
vioscreen_d_cheese
0.191589042
vioscreen_d_milk
0.712273919
vioscreen_d_tot_soym
1.2158903779999999
vioscreen_d_total
0.906246572
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.3631508189999995
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.0932057
vioscreen_discfat_oil
17.59367107
vioscreen_discfat_sol
22.42994569
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
0.645315092
vioscreen_f_nj_citmlb
0.20917809899999998
vioscreen_f_nj_other
0.391013702
vioscreen_f_nj_total
0.6002191410000001
vioscreen_f_other
1.9520820509999999
vioscreen_f_total
2.5974244840000003
vioscreen_fat
50.16672196
vioscreen_fiber
23.18345195
vioscreen_fibh2o
10.06298628
vioscreen_fibinso
13.17295992
vioscreen_finished
8/25/15
vioscreen_fish_servings
5.72673
vioscreen_fol_deqv
585.4136557999999
vioscreen_fol_nat
361.13681510000004
vioscreen_fol_syn
131.8927868
vioscreen_formontn
0.00109589
vioscreen_fried_fish_servings
1.58808
vioscreen_fried_food_servings
0.32877
vioscreen_frt5_day
3.4
vioscreen_frtsumm
5.2
vioscreen_fructose
47.84154003
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
5.859314801
vioscreen_g_total
6.512904002999999
vioscreen_g_whl
0.653589034
vioscreen_galactos
0.23230133100000003
vioscreen_gammtoco
8.84104238
vioscreen_gender
false
vioscreen_genistn
4.889671514
vioscreen_glac
119.9407534
vioscreen_gltc
127.2605201
vioscreen_glucose
41.05005619
vioscreen_glutamic
13.59906892
vioscreen_glycine
2.64693152
vioscreen_glycitn
0.718109633
vioscreen_grams
4446.205479
vioscreen_hei2010_dairy
4.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
5.3
vioscreen_hei2010_score
67.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.8
vioscreen_hei2010_whole_grains
2.2
vioscreen_hei_drk_g_org_veg_leg
4.1
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.8
vioscreen_hei_milk
4.8
vioscreen_hei_non_juice_frt
3.8
vioscreen_hei_oils
7.4
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
70.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
1.667205225
vioscreen_inositol
0.451315099
vioscreen_iron
14.48523384
vioscreen_isoleuc
2.795096118
vioscreen_isomalt
0.0
vioscreen_joules
8237.469178
vioscreen_juice_servings
3.9943800000000005
vioscreen_lactitol
0.0
vioscreen_lactose
9.063807657
vioscreen_legumes
0.04361643900000001
vioscreen_leucine
4.8674798
vioscreen_line_gi
548.0949486000001
vioscreen_low_fat_dairy_serving
0.15611
vioscreen_lutzeax
5038.575685
vioscreen_lycopene
28616.635619999997
vioscreen_lysine
4.250273571
vioscreen_m_egg
0.20904110399999998
vioscreen_m_fish_hi
1.9117809559999999
vioscreen_m_fish_lo
1.351726041
vioscreen_m_frank
0.061095888
vioscreen_m_meat
0.042794523
vioscreen_m_mpf
3.709972308
vioscreen_m_nutsd
0.119780825
vioscreen_m_organ
0.0
vioscreen_m_poult
0.34257532399999996
vioscreen_m_soy
0.417095864
vioscreen_magnes
391.86832189999996
vioscreen_maltitol
0.0
vioscreen_maltose
4.663451814
vioscreen_mangan
6.068329275
vioscreen_mannitol
0.520547945
vioscreen_methhis3
11.54306774
vioscreen_methion
1.435040701
vioscreen_mfa141
0.031123283999999998
vioscreen_mfa161
0.751178062
vioscreen_mfa181
18.81159033
vioscreen_mfa201
0.40512323200000006
vioscreen_mfa221
0.359698654
vioscreen_mfatot
20.55934289
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
9.822493713
vioscreen_nccglbr
208.0110231
vioscreen_nccglgr
145.5119649
vioscreen_niacin
22.90421929
vioscreen_niacineq
35.53013966
vioscreen_nitrogen
11.12073924
vioscreen_non_fried_fish_servings
4.13865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.061287491
vioscreen_oxalic
261.0501498
vioscreen_oxalicm
262.9659461
vioscreen_pantothe
7.379042032
vioscreen_pectins
3.670602459
vioscreen_pfa182
8.348028815
vioscreen_pfa183
1.018767056
vioscreen_pfa184
0.083863021
vioscreen_pfa204
0.095479458
vioscreen_pfa205
0.286821924
vioscreen_pfa225
0.10101371699999999
vioscreen_pfa226
0.572027379
vioscreen_pfatot
10.69999866
vioscreen_phenylal
2.8051234419999997
vioscreen_phosphor
1198.9749140000001
vioscreen_phytic
566.5438784
vioscreen_pinitol
0.035013701
vioscreen_potass
4447.363356
vioscreen_procdate
10/28/15
vioscreen_proline
3.9393688460000003
vioscreen_protanim
36.19268515
vioscreen_protein
68.34365903
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.1512896
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
177.0
vioscreen_retinol
279.0880779
vioscreen_rgrain
5.97813704
vioscreen_ribofla
2.351178062
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.43296
vioscreen_satoco
0.0
vioscreen_selenium
104.7219927
vioscreen_serine
2.9232599130000003
vioscreen_sfa100
0.278246569
vioscreen_sfa120
0.5401643939999999
vioscreen_sfa140
1.237698657
vioscreen_sfa160
8.153998555
vioscreen_sfa170
0.068931522
vioscreen_sfa180
3.452082219
vioscreen_sfa200
0.106191776
vioscreen_sfa220
0.055561651
vioscreen_sfa40
0.307369828
vioscreen_sfa60
0.17819178300000002
vioscreen_sfa80
0.156383567
vioscreen_sfatot
14.71758883
vioscreen_sodium
4399.756507
vioscreen_sorbitol
0.997835593
vioscreen_srvid
20496.0
vioscreen_starch
93.68191353
vioscreen_started
8/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.13862907
vioscreen_sweet_servings
0.5231600000000001
vioscreen_tagatose
0.873616425
vioscreen_tfa161t
0.023698629
vioscreen_tfa181t
1.475479419
vioscreen_tfa182t
0.254356175
vioscreen_tgrain
6.514740074
vioscreen_thiamin
1.791123147
vioscreen_threonin
2.479561918
vioscreen_time
27.0
vioscreen_totaltfa
1.7839450780000001
vioscreen_totcla
0.052712333
vioscreen_totfolat
493.02958049999995
vioscreen_totsugar
132.7818386
vioscreen_tryptoph
0.758328874
vioscreen_tyrosine
2.138082259
vioscreen_user_id
20496.0
vioscreen_v_drkgr
0.39687671399999996
vioscreen_v_orange
0.24865756100000003
vioscreen_v_other
1.225561691
vioscreen_v_potato
0.24558903899999998
vioscreen_v_starcy
0.11506849300000001
vioscreen_v_tomato
1.328219145
vioscreen_v_total
3.559123167
vioscreen_valine
3.2030403869999997
vioscreen_veg5_day
5.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.1
vioscreen_visit
1.0
vioscreen_vita_iu
15600.857530000001
vioscreen_vita_rae
1012.434675
vioscreen_vita_re
1745.779966
vioscreen_vitb12
5.41561597
vioscreen_vitb6
2.0893151690000002
vioscreen_vitc
226.1973245
vioscreen_vitd
11.98890465
vioscreen_vitd2
0.799260304
vioscreen_vitd3
11.18961633
vioscreen_vitd_iu
479.5561858
vioscreen_vite_iu
14.58781036
vioscreen_vitk
203.8035959
vioscreen_water
4018.4068490000004
vioscreen_weight
Not provided
vioscreen_wgrain
0.536630124
vioscreen_whole_grain_servings
0.65359
vioscreen_xylitol
0.039753425
vioscreen_zinc
9.907807149
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
48.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)