American Gut Project; 10317.000023121
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633061
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023121
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23121
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Not provided
birth year
1976.0
bmi
24.41
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Not provided
census_region
West
chickenpox
Yes
clinical condition
Self-diagnosed
collection date
03/05/2015
collection month
March
collection season
Spring
collection time
11:00
collection_timestamp
2015-03-05 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1636.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Not provided
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
66dd1520b9744a31a5f5956a2032f6cb2bec0cb2b5195a3508ff60ba966bd6569395663b5535de0ff990629304f5220fe2fcf5773c672245d79d5da730ff3a17
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.7
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-111.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Not provided
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023121
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
Less than 5 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
UT
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Daily
sugary_sweets_frequency
Daily
survey_id
21d81ec0f254bde9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Never
vioscreen_a_bev
0.000136986
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.601205486
vioscreen_addsugar
7.40424604
vioscreen_adsugtot
6.84386304
vioscreen_age
215.0
vioscreen_alanine
1.3498903880000002
vioscreen_alcohol
0.018931506
vioscreen_alcohol_servings
0.00014
vioscreen_alphacar
0.173753409
vioscreen_alphtoce
2.491177828
vioscreen_alphtoco
1.66260284
vioscreen_arginine
1.426082413
vioscreen_ash
5.895206148
vioscreen_aspartam
0.0
vioscreen_aspartic
2.1582467690000002
vioscreen_avcarb
79.92008776
vioscreen_bcodeid
Not provided
vioscreen_betacar
161.059664
vioscreen_betacryp
0.30871233
vioscreen_betaine
67.7682363
vioscreen_betatoco
0.21115068399999998
vioscreen_biochana
0.0
vioscreen_bmi
Not provided
vioscreen_caffeine
0.135671234
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.32
vioscreen_calcium_servings
0.79367
vioscreen_calories
665.1018836000001
vioscreen_carbo
83.05219392
vioscreen_cholest
71.34334332
vioscreen_choline
79.13130351
vioscreen_clac9t11
0.025890412999999998
vioscreen_clat10c12
0.005835616
vioscreen_copper
0.32441099
vioscreen_coumest
0.00005479999999999999
vioscreen_cystine
0.35309590399999996
vioscreen_d_cheese
0.236575338
vioscreen_d_milk
0.07852055299999999
vioscreen_d_tot_soym
0.320000008
vioscreen_d_total
0.320000008
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.028958902999999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.088739683
vioscreen_discfat_oil
4.96063015
vioscreen_discfat_sol
16.2874786
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.000246575
vioscreen_f_nj_citmlb
0.000246575
vioscreen_f_nj_other
0.002164384
vioscreen_f_nj_total
0.002410959
vioscreen_f_other
1.183945246
vioscreen_f_total
1.184191811
vioscreen_fat
25.75775364
vioscreen_fiber
3.12186296
vioscreen_fibh2o
0.819342459
vioscreen_fibinso
2.301177895
vioscreen_finished
1/26/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
97.8598887
vioscreen_fol_nat
20.35416444
vioscreen_fol_syn
45.54827162
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.33209
vioscreen_frt5_day
1.6
vioscreen_frtsumm
2.4
vioscreen_fructose
19.30764394
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
1.463808159
vioscreen_g_total
1.9741918280000001
vioscreen_g_whl
0.510410967
vioscreen_galactos
0.027424657999999998
vioscreen_gammtoco
7.333616492000001
vioscreen_gender
false
vioscreen_genistn
0.036465755
vioscreen_glac
38.73556025
vioscreen_gltc
40.49849101
vioscreen_glucose
13.89257411
vioscreen_glutamic
5.197862933
vioscreen_glycine
1.214849268
vioscreen_glycitn
0.008821917
vioscreen_grams
930.5692637
vioscreen_hei2010_dairy
3.7
vioscreen_hei2010_empty_calories
15.4
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.4
vioscreen_hei2010_score
50.3
vioscreen_hei2010_sea_foods_plant_protiens
0.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
1.2
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
5.1
vioscreen_hei_drk_g_org_veg_leg
0.5
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.7
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
6.2
vioscreen_hei_sat_fat
6.8
vioscreen_hei_score
56.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.9
vioscreen_hei_veg
1.2
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
0.7519726059999999
vioscreen_inositol
0.086986301
vioscreen_iron
3.2953151760000003
vioscreen_isoleuc
1.235479485
vioscreen_isomalt
0.0
vioscreen_joules
2782.785445
vioscreen_juice_servings
2.3635599999999997
vioscreen_lactitol
0.0
vioscreen_lactose
1.7390686869999998
vioscreen_legumes
0.0
vioscreen_leucine
1.974082466
vioscreen_line_gi
145.4420591
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
200.7212757
vioscreen_lycopene
196.5378853
vioscreen_lysine
1.824794654
vioscreen_m_egg
0.012821917
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
1.112794474
vioscreen_m_meat
0.005726027
vioscreen_m_mpf
2.492821764
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
1.374273932
vioscreen_m_soy
0.003972603
vioscreen_magnes
72.82049444
vioscreen_maltitol
0.0
vioscreen_maltose
0.443643816
vioscreen_mangan
1.19879443
vioscreen_mannitol
0.004027397
vioscreen_methhis3
7.547725813
vioscreen_methion
0.627835668
vioscreen_mfa141
0.03306849
vioscreen_mfa161
0.400438366
vioscreen_mfa181
9.53750602
vioscreen_mfa201
0.10038357
vioscreen_mfa221
0.000246575
vioscreen_mfatot
10.113587599999999
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
1.66260284
vioscreen_nccglbr
61.00377783
vioscreen_nccglgr
42.68076841
vioscreen_niacin
7.197260274
vioscreen_niacineq
12.29978195
vioscreen_nitrogen
4.268794815
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.538493075
vioscreen_oxalic
30.03948256
vioscreen_oxalicm
33.77041417
vioscreen_pantothe
1.144137113
vioscreen_pectins
0.162794505
vioscreen_pfa182
4.431753331
vioscreen_pfa183
0.504383495
vioscreen_pfa184
0.000767123
vioscreen_pfa204
0.051123287
vioscreen_pfa205
0.006931507
vioscreen_pfa225
0.010849315
vioscreen_pfa226
0.016356166000000002
vioscreen_pfatot
5.068356365
vioscreen_phenylal
1.13419156
vioscreen_phosphor
353.9062286
vioscreen_phytic
160.14001499999998
vioscreen_pinitol
0.00109589
vioscreen_potass
656.6214041000001
vioscreen_procdate
10/28/15
vioscreen_proline
1.705918069
vioscreen_protanim
20.12128906
vioscreen_protein
26.31756207
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
6.196795402999999
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
591.0
vioscreen_retinol
87.36245719
vioscreen_rgrain
1.6032330240000001
vioscreen_ribofla
0.40389040600000004
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.12362000000000001
vioscreen_satoco
0.0
vioscreen_selenium
38.67514715
vioscreen_serine
1.101780805
vioscreen_sfa100
0.146328777
vioscreen_sfa120
0.37923287200000005
vioscreen_sfa140
0.628383563
vioscreen_sfa160
4.2744384769999995
vioscreen_sfa170
0.027698629
vioscreen_sfa180
2.015643561
vioscreen_sfa200
0.053616437999999995
vioscreen_sfa220
0.01989041
vioscreen_sfa40
0.119698626
vioscreen_sfa60
0.078630144
vioscreen_sfa80
0.072767127
vioscreen_sfatot
7.939341422
vioscreen_sodium
1333.550856
vioscreen_sorbitol
0.572410981
vioscreen_srvid
16986.0
vioscreen_starch
31.39055009
vioscreen_started
1/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.212821731
vioscreen_sweet_servings
0.24931999999999999
vioscreen_tagatose
0.22013698199999998
vioscreen_tfa161t
0.021917807999999997
vioscreen_tfa181t
1.688520541
vioscreen_tfa182t
0.181589038
vioscreen_tgrain
2.10690433
vioscreen_thiamin
0.49252051799999996
vioscreen_threonin
1.025424487
vioscreen_time
15.0
vioscreen_totaltfa
1.916273645
vioscreen_totcla
0.032219176
vioscreen_totfolat
65.90241866
vioscreen_totsugar
43.64221961
vioscreen_tryptoph
0.306328781
vioscreen_tyrosine
0.871342238
vioscreen_user_id
16986.0
vioscreen_v_drkgr
0.026027397
vioscreen_v_orange
0.0
vioscreen_v_other
0.04279452
vioscreen_v_potato
0.100630136
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.006410959
vioscreen_v_total
0.175835617
vioscreen_valine
1.289753368
vioscreen_veg5_day
0.2
vioscreen_vegetable_servings
0.0
vioscreen_vegsumm
0.4
vioscreen_visit
1.0
vioscreen_vita_iu
560.9523545
vioscreen_vita_rae
100.80418449999999
vioscreen_vita_re
114.2458048
vioscreen_vitb12
0.661260276
vioscreen_vitb6
0.42547941899999997
vioscreen_vitc
4.074986622
vioscreen_vitd
1.206958844
vioscreen_vitd2
0.0
vioscreen_vitd3
1.206958844
vioscreen_vitd_iu
48.27835376
vioscreen_vite_iu
2.470794594
vioscreen_vitk
18.37465887
vioscreen_water
816.747089
vioscreen_weight
Not provided
vioscreen_wgrain
0.503671223
vioscreen_whole_grain_servings
0.51041
vioscreen_xylitol
0.000547945
vioscreen_zinc
2.3627396259999998
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
81.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)