American Gut Project; 10317.000026503
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632746
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026503
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26503
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
23.17
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-15
collection month
April
collection season
Spring
collection time
13:45
collection_timestamp
2015-04-15 13:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
114.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
c89e072ef0e43bdf3d163f6a0aaa39019d1cea84f7486db925a66a76a4cb9fd21d53063673efbf7109c15cea69647aa13692cfea57374ff35c77833348b8f030
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
36.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-119.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026503
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
21c9eca28bbc4d02
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.47134244700000005
vioscreen_a_cal
54.28876819
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.765479185
vioscreen_addsugar
31.26073416
vioscreen_adsugtot
29.17660263
vioscreen_age
215.0
vioscreen_alanine
3.0197258939999996
vioscreen_alcohol
7.029561751
vioscreen_alcohol_servings
0.47134
vioscreen_alphacar
766.3699486
vioscreen_alphtoce
28.31995131
vioscreen_alphtoco
18.63189346
vioscreen_arginine
4.275779912
vioscreen_ash
18.17685012
vioscreen_aspartam
0.0
vioscreen_aspartic
6.590164812
vioscreen_avcarb
155.4046661
vioscreen_bcodeid
Not provided
vioscreen_betacar
3342.945205
vioscreen_betacryp
106.5706015
vioscreen_betaine
83.83981700000001
vioscreen_betatoco
0.593260256
vioscreen_biochana
0.005150685
vioscreen_bmi
Not provided
vioscreen_caffeine
267.8796875
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.35852
vioscreen_calcium_servings
3.44715
vioscreen_calories
1683.081507
vioscreen_carbo
174.4926691
vioscreen_cholest
214.05854019999998
vioscreen_choline
323.16637410000004
vioscreen_clac9t11
0.08493150199999999
vioscreen_clat10c12
0.01931507
vioscreen_copper
1.2532053490000001
vioscreen_coumest
0.193561648
vioscreen_cystine
0.847753405
vioscreen_d_cheese
0.566054796
vioscreen_d_milk
1.417671266
vioscreen_d_tot_soym
2.3585205080000002
vioscreen_d_total
2.3585205080000002
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.229452055
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.456794634
vioscreen_discfat_oil
29.69657267
vioscreen_discfat_sol
30.00545002
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000849315
vioscreen_f_citmlb
0.19156161800000002
vioscreen_f_nj_citmlb
0.190767095
vioscreen_f_nj_other
0.5821918229999999
vioscreen_f_nj_total
0.772986342
vioscreen_f_other
0.5821918229999999
vioscreen_f_total
0.773780885
vioscreen_fat
79.59906357
vioscreen_fiber
19.08230415
vioscreen_fibh2o
6.389288581000001
vioscreen_fibinso
12.70262869
vioscreen_finished
4/15/15
vioscreen_fish_servings
0.5025
vioscreen_fol_deqv
653.5073629999999
vioscreen_fol_nat
234.55734159999997
vioscreen_fol_syn
246.36209330000003
vioscreen_formontn
0.0036438359999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.5
vioscreen_fructose
10.63011157
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.0554794519999997
vioscreen_g_total
3.8176714339999998
vioscreen_g_whl
0.762219155
vioscreen_galactos
0.647999928
vioscreen_gammtoco
12.96610793
vioscreen_gender
false
vioscreen_genistn
0.131972598
vioscreen_glac
66.35210831
vioscreen_gltc
71.8452911
vioscreen_glucose
11.57314988
vioscreen_glutamic
14.50660317
vioscreen_glycine
2.829917594
vioscreen_glycitn
0.009808219
vioscreen_grams
2812.804795
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
17.5
vioscreen_hei2010_fatty_acids
6.5
vioscreen_hei2010_fruit
2.9
vioscreen_hei2010_greens_beans
4.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
79.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.9
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.0
vioscreen_hei_drk_g_org_veg_leg
3.3
vioscreen_hei_fruit
2.9
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.2
vioscreen_hei_score
74.5
vioscreen_hei_sodium
4.7
vioscreen_hei_sol_fat_alc_add_sug
16.0
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
1.5
vioscreen_height
Not provided
vioscreen_histidin
1.897917949
vioscreen_inositol
0.052904108
vioscreen_iron
17.13657427
vioscreen_isoleuc
3.046000107
vioscreen_isomalt
0.0
vioscreen_joules
7042.011644
vioscreen_juice_servings
0.00164
vioscreen_lactitol
0.0
vioscreen_lactose
23.55246415
vioscreen_legumes
0.079863018
vioscreen_leucine
5.529752381000001
vioscreen_line_gi
345.0004923
vioscreen_low_fat_dairy_serving
0.56384
vioscreen_lutzeax
2387.458904
vioscreen_lycopene
3749.881507
vioscreen_lysine
4.296137227
vioscreen_m_egg
0.568493151
vioscreen_m_fish_hi
0.073369865
vioscreen_m_fish_lo
0.219123297
vioscreen_m_frank
0.342821889
vioscreen_m_meat
0.8910137020000001
vioscreen_m_mpf
1.877616485
vioscreen_m_nutsd
4.369479412
vioscreen_m_organ
0.0
vioscreen_m_poult
0.351287675
vioscreen_m_soy
0.007671231999999999
vioscreen_magnes
345.772774
vioscreen_maltitol
0.0
vioscreen_maltose
1.214766996
vioscreen_mangan
3.6321917810000004
vioscreen_mannitol
0.223726058
vioscreen_methhis3
7.037863201
vioscreen_methion
1.499287644
vioscreen_mfa141
0.113232871
vioscreen_mfa161
0.7681095490000001
vioscreen_mfa181
29.29881475
vioscreen_mfa201
0.438438311
vioscreen_mfa221
0.00539726
vioscreen_mfatot
30.79879067
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.98016508
vioscreen_nccglbr
117.8254709
vioscreen_nccglgr
82.42764876
vioscreen_niacin
28.05547945
vioscreen_niacineq
41.31961419
vioscreen_nitrogen
11.71506849
vioscreen_non_fried_fish_servings
0.5025
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.104438594
vioscreen_oxalic
279.290518
vioscreen_oxalicm
318.51502569999997
vioscreen_pantothe
10.99032802
vioscreen_pectins
2.7500546810000004
vioscreen_pfa182
17.74723486
vioscreen_pfa183
1.0432057
vioscreen_pfa184
0.002246575
vioscreen_pfa204
0.078630144
vioscreen_pfa205
0.015150684
vioscreen_pfa225
0.007835617
vioscreen_pfa226
0.036410956
vioscreen_pfatot
18.98312286
vioscreen_phenylal
3.333670671
vioscreen_phosphor
1346.669092
vioscreen_phytic
748.5849315
vioscreen_pinitol
0.00339726
vioscreen_potass
2822.4761989999997
vioscreen_procdate
10/28/15
vioscreen_proline
5.088931065
vioscreen_protanim
39.94301156
vioscreen_protein
70.626311
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.67673908
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
475.0
vioscreen_retinol
483.51117289999996
vioscreen_rgrain
3.032766682
vioscreen_ribofla
2.9871782689999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.92529
vioscreen_satoco
14.83997218
vioscreen_selenium
113.04026110000001
vioscreen_serine
3.687616385
vioscreen_sfa100
0.44328768
vioscreen_sfa120
0.7581369059999999
vioscreen_sfa140
2.0246299430000003
vioscreen_sfa160
12.88104265
vioscreen_sfa170
0.086602731
vioscreen_sfa180
5.418603181
vioscreen_sfa200
0.36320549999999996
vioscreen_sfa220
0.7018629940000001
vioscreen_sfa40
0.574931482
vioscreen_sfa60
0.288191788
vioscreen_sfa80
0.207424655
vioscreen_sfatot
24.34004977
vioscreen_sodium
2468.60274
vioscreen_sorbitol
0.457068415
vioscreen_srvid
18520.0
vioscreen_starch
64.76963827
vioscreen_started
4/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.53745184
vioscreen_sweet_servings
0.36712
vioscreen_tagatose
3.138054835
vioscreen_tfa161t
0.035342465
vioscreen_tfa181t
1.231095907
vioscreen_tfa182t
0.239589054
vioscreen_tgrain
4.238739097
vioscreen_thiamin
1.927040915
vioscreen_threonin
2.583013498
vioscreen_time
26.0
vioscreen_totaltfa
1.5242741000000002
vioscreen_totcla
0.10427397599999999
vioscreen_totfolat
480.9193921
vioscreen_totsugar
79.5656143
vioscreen_tryptoph
0.79539728
vioscreen_tyrosine
2.642191848
vioscreen_user_id
18520.0
vioscreen_v_drkgr
0.22619177399999998
vioscreen_v_orange
0.137945201
vioscreen_v_other
0.480548012
vioscreen_v_potato
0.239205494
vioscreen_v_starcy
0.060986307000000003
vioscreen_v_tomato
0.29463011899999997
vioscreen_v_total
1.439561651
vioscreen_valine
3.6719726560000003
vioscreen_veg5_day
1.9
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.9
vioscreen_visit
1.0
vioscreen_vita_iu
7910.041095999999
vioscreen_vita_rae
798.4623288
vioscreen_vita_re
1113.41464
vioscreen_vitb12
6.9046574000000005
vioscreen_vitb6
2.499123435
vioscreen_vitc
84.01801156
vioscreen_vitd
6.57024695
vioscreen_vitd2
0.0007123289999999999
vioscreen_vitd3
6.569562017999999
vioscreen_vitd_iu
262.80987799999997
vioscreen_vite_iu
32.674355199999994
vioscreen_vitk
115.16986299999999
vioscreen_water
2485.6460620000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.2059178179999999
vioscreen_whole_grain_servings
0.76222
vioscreen_xylitol
0.020219178
vioscreen_zinc
17.06575343
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)