American Gut Project; 10317.000014173
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632364
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:37Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000014173
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000014173
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
19.01
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
01/05/2015
collection month
January
collection season
Winter
collection time
07:40
collection_timestamp
2015-01-05 07:40
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1615.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
b17360ca6c75d0ff2b95b521829b98a82b4d31c32aabcde0a953b552b139e3f81cb007d1f6640706c5036fa158f7a91b963747acdca0bcd0329f80a9cc32db5c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000014173
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
f9fd01f27fecfa83
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
42.04435734
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.74041096
vioscreen_addsugar
63.68451948
vioscreen_adsugtot
52.68139983
vioscreen_age
215.0
vioscreen_alanine
2.344246475
vioscreen_alcohol
0.001534247
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
4475.162329
vioscreen_alphtoce
28.53361515
vioscreen_alphtoco
20.68375428
vioscreen_arginine
3.6379999869999997
vioscreen_ash
15.13983305
vioscreen_aspartam
42.04435734
vioscreen_aspartic
5.245945259
vioscreen_avcarb
271.7964041
vioscreen_bcodeid
Not provided
vioscreen_betacar
14356.8274
vioscreen_betacryp
44.9609375
vioscreen_betaine
221.1900043
vioscreen_betatoco
0.973315095
vioscreen_biochana
0.001972603
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.74027
vioscreen_calcium_servings
2.8569
vioscreen_calories
1965.1414379999999
vioscreen_carbo
299.888506
vioscreen_cholest
12.52183487
vioscreen_choline
190.6752997
vioscreen_clac9t11
0.009972601999999999
vioscreen_clat10c12
0.005479451999999999
vioscreen_copper
1.86172594
vioscreen_coumest
0.011342467
vioscreen_cystine
0.927616485
vioscreen_d_cheese
0.038767122
vioscreen_d_milk
0.673698655
vioscreen_d_tot_soym
0.7402739220000001
vioscreen_d_total
0.7402739220000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
3.075534099
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.9459452589999997
vioscreen_discfat_oil
40.10175514
vioscreen_discfat_sol
8.687067905
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.08150684400000001
vioscreen_f_nj_citmlb
0.08150684400000001
vioscreen_f_nj_other
0.700602701
vioscreen_f_nj_total
0.7822191209999999
vioscreen_f_other
0.772575316
vioscreen_f_total
0.8541916940000001
vioscreen_fat
66.51504174
vioscreen_fiber
28.05843857
vioscreen_fibh2o
7.643808192000001
vioscreen_fibinso
20.43844044
vioscreen_finished
1/4/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
712.9178509999999
vioscreen_fol_nat
219.6562714
vioscreen_fol_syn
290.2191139
vioscreen_formontn
0.00339726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.9
vioscreen_frtsumm
1.7
vioscreen_fructose
18.58786521
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
8.03630137
vioscreen_g_total
11.20690416
vioscreen_g_whl
3.1705205210000003
vioscreen_galactos
0.42208222700000003
vioscreen_gammtoco
14.30098593
vioscreen_gender
false
vioscreen_genistn
3.479424965
vioscreen_glac
152.9684824
vioscreen_gltc
165.2015625
vioscreen_glucose
18.56797544
vioscreen_glutamic
12.65317717
vioscreen_glycine
2.261726275
vioscreen_glycitn
0.504109589
vioscreen_grams
2541.994521
vioscreen_hei2010_dairy
2.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
2.4
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
0.8
vioscreen_hei2010_score
75.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
4.5
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.7
vioscreen_hei_milk
2.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
85.4
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
4.5
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.323534404
vioscreen_inositol
0.036849315
vioscreen_iron
20.1652317
vioscreen_isoleuc
2.144794454
vioscreen_isomalt
0.0
vioscreen_joules
8222.152055
vioscreen_juice_servings
0.14397000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
9.847452242000001
vioscreen_legumes
0.009808219
vioscreen_leucine
4.152794574
vioscreen_line_gi
698.2382277
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1390.162329
vioscreen_lycopene
34.94413527
vioscreen_lysine
2.435205245
vioscreen_m_egg
0.018547945
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.01860274
vioscreen_m_mpf
0.01860274
vioscreen_m_nutsd
4.373671273
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.336438365
vioscreen_magnes
441.5310788
vioscreen_maltitol
0.0
vioscreen_maltose
6.677836045
vioscreen_mangan
6.445150631000001
vioscreen_mannitol
0.438602771
vioscreen_methhis3
0.082273974
vioscreen_methion
0.941671293
vioscreen_mfa141
0.006520548
vioscreen_mfa161
0.12682192
vioscreen_mfa181
24.74906625
vioscreen_mfa201
0.394876726
vioscreen_mfa221
0.004712329
vioscreen_mfatot
25.33164598
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.77410905
vioscreen_nccglbr
257.1428938
vioscreen_nccglgr
179.8598459
vioscreen_niacin
29.57375321
vioscreen_niacineq
40.76856807
vioscreen_nitrogen
9.825315711
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.962328684
vioscreen_oxalic
288.0169735
vioscreen_oxalicm
320.8059503
vioscreen_pantothe
6.209890705
vioscreen_pectins
2.793013899
vioscreen_pfa182
23.85085081
vioscreen_pfa183
0.956849231
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.00339726
vioscreen_pfa205
0.003671233
vioscreen_pfa225
0.000383562
vioscreen_pfa226
0.000383562
vioscreen_pfatot
24.83186269
vioscreen_phenylal
2.664876525
vioscreen_phosphor
1163.437757
vioscreen_phytic
1324.198202
vioscreen_pinitol
0.053506846
vioscreen_potass
2356.293836
vioscreen_procdate
10/28/15
vioscreen_proline
3.9363562180000002
vioscreen_protanim
10.53813744
vioscreen_protein
57.70925728
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
47.171896399999994
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
658.0
vioscreen_retinol
434.69357879999995
vioscreen_rgrain
6.589807631
vioscreen_ribofla
1.5427670830000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.44132
vioscreen_satoco
10.90986328
vioscreen_selenium
135.1764127
vioscreen_serine
2.881370064
vioscreen_sfa100
0.108410958
vioscreen_sfa120
0.55279449
vioscreen_sfa140
0.47260274
vioscreen_sfa160
7.226767846
vioscreen_sfa170
0.020547945
vioscreen_sfa180
2.589972342
vioscreen_sfa200
0.35736987
vioscreen_sfa220
0.6970958970000001
vioscreen_sfa40
0.054164385
vioscreen_sfa60
0.034219177
vioscreen_sfa80
0.09726027400000001
vioscreen_sfatot
12.54249251
vioscreen_sodium
2690.521233
vioscreen_sorbitol
0.47824652700000003
vioscreen_srvid
16757.0
vioscreen_starch
150.6850813
vioscreen_started
1/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.0023598
vioscreen_sweet_servings
0.0
vioscreen_tagatose
3.28353422
vioscreen_tfa161t
0.000684932
vioscreen_tfa181t
0.60084935
vioscreen_tfa182t
0.163068494
vioscreen_tgrain
10.77531504
vioscreen_thiamin
2.119068386
vioscreen_threonin
1.989890404
vioscreen_time
44.0
vioscreen_totaltfa
0.86260284
vioscreen_totcla
0.015753425
vioscreen_totfolat
509.8754281
vioscreen_totsugar
94.30424872
vioscreen_tryptoph
0.672109609
vioscreen_tyrosine
1.7921369999999999
vioscreen_user_id
16757.0
vioscreen_v_drkgr
0.190109587
vioscreen_v_orange
1.160191784
vioscreen_v_other
0.264520556
vioscreen_v_potato
0.342356162
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.004876712
vioscreen_v_total
1.962054861
vioscreen_valine
2.601178229
vioscreen_veg5_day
4.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.9
vioscreen_visit
1.0
vioscreen_vita_iu
29143.939730000002
vioscreen_vita_rae
1819.434418
vioscreen_vita_re
3204.175342
vioscreen_vitb12
2.638794614
vioscreen_vitb6
2.148465593
vioscreen_vitc
81.98137307
vioscreen_vitd
3.654548039
vioscreen_vitd2
0.0
vioscreen_vitd3
3.654548039
vioscreen_vitd_iu
146.1819216
vioscreen_vite_iu
34.44055009
vioscreen_vitk
81.63816353
vioscreen_water
2112.622089
vioscreen_weight
Not provided
vioscreen_wgrain
4.185534166
vioscreen_whole_grain_servings
3.1705200000000002
vioscreen_xylitol
0.022191782
vioscreen_zinc
11.66512334
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily