Seawater sample Texel, 2012-06-29
seawater metagenome
seawater sample taken near the oyster reef at low tide; temperature and salinity measured at a nearby site by ship Mya IIl
ENA first public
2016-06-29
ENA last update
2016-10-21
External Id
SAMEA3462822
INSDC center alias
ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE
INSDC center name
ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE
INSDC first public
2016-06-29T17:01:56Z
INSDC last update
2016-10-21T09:44:06Z
INSDC status
public
Submitter Id
SW_Texel_20120629
collection date
2012-06-29
environment (biome)
aquatic, marine, benthic, coastal
environment (feature)
oyster reef
environment (material)
environmental material, water, seawater
geographic location (country and/or sea)
North Sea
geographic location (depth)
0.5
geographic location (latitude)
53.00167
geographic location (longitude)
4.789167
investigation type
mimarks-survey
multiplex identifiers
f: CTCTTCTC; r: GACAAGTG
pcr conditions
initial denaturation:98degC_30s; denaturation:98degC_9s;annealing:55degC_1min; elongation:72degC_90s; final elongation:72degC_10min; 30 cycles
pcr primers
27f-338r
pcr primers
27F: TCAGAGTTTGATCMTGGCTCAG + 338r: CATGCTGCCTCCCGTAGGAGT
project name
PRJEB9624
salinity
28.63721334
sample name
SW_Texel_20120629
sample volume or weight for DNA extraction
100
sequencing method
Sequencing by synthesis, Illumina paired-end
target gene
16s rRNA
target subfragment
V1-V2
temperature
17.19172972
water environmental package
water