10317.000028170; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633575
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:57Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028170
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
77.0
age_corrected
77.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28170
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1938.0
bmi
22.67
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-24
collection month
June
collection season
Summer
collection time
09:35
collection_timestamp
2015-06-24 09:35
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
95.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
Not provided
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
04da380cdb10745bf594a775a8518c71c3a64ca0240b26c61a140adee69f1e43849e6360a05e9ac5ca72373784951956dd28c1ee71e72b44d375981f2ad773bd
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
50.5
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
-3.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
Two
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028170
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
b71ae9bc76ad3ce4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.17038355800000002
vioscreen_a_cal
21.27112318
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.630410892
vioscreen_addsugar
14.43652076
vioscreen_adsugtot
11.04506769
vioscreen_age
215.0
vioscreen_alanine
2.021479358
vioscreen_alcohol
2.6639725359999997
vioscreen_alcohol_servings
0.17038
vioscreen_alphacar
2598.2936640000003
vioscreen_alphtoce
16.91726108
vioscreen_alphtoco
15.77685012
vioscreen_arginine
3.446082045
vioscreen_ash
15.2315336
vioscreen_aspartam
0.0
vioscreen_aspartic
5.681890786
vioscreen_avcarb
132.7945205
vioscreen_bcodeid
Not provided
vioscreen_betacar
8549.047945
vioscreen_betacryp
64.87478596
vioscreen_betaine
18.68383722
vioscreen_betatoco
0.477589019
vioscreen_biochana
0.013315068000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
152.70618580000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.74452
vioscreen_calcium_servings
2.79299
vioscreen_calories
1646.7263699999999
vioscreen_carbo
158.8595034
vioscreen_cholest
283.6179795
vioscreen_choline
331.98114300000003
vioscreen_clac9t11
0.104684939
vioscreen_clat10c12
0.020082192
vioscreen_copper
1.475671219
vioscreen_coumest
0.03479452
vioscreen_cystine
0.603315129
vioscreen_d_cheese
0.9516986999999999
vioscreen_d_milk
0.78906852
vioscreen_d_tot_soym
1.7445205480000001
vioscreen_d_total
1.7445205480000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.048054797
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.20153424
vioscreen_discfat_oil
40.46633134
vioscreen_discfat_sol
34.06065925
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003780822
vioscreen_f_citmlb
0.334493162
vioscreen_f_nj_citmlb
0.331452064
vioscreen_f_nj_other
2.762000013
vioscreen_f_nj_total
3.093452015
vioscreen_f_other
2.762000013
vioscreen_f_total
3.09649307
vioscreen_fat
96.90966396
vioscreen_fiber
26.06416149
vioscreen_fibh2o
5.869342626
vioscreen_fibinso
20.34150524
vioscreen_finished
6/19/15
vioscreen_fish_servings
0.09154
vioscreen_fol_deqv
349.55042810000003
vioscreen_fol_nat
342.5719392
vioscreen_fol_syn
4.102383548
vioscreen_formontn
0.01169863
vioscreen_fried_fish_servings
0.09154
vioscreen_fried_food_servings
0.01644
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.2
vioscreen_fructose
30.4546875
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.075205482
vioscreen_g_total
0.12454794300000001
vioscreen_g_whl
0.049342465999999995
vioscreen_galactos
0.14452052699999998
vioscreen_gammtoco
9.359314801
vioscreen_gender
false
vioscreen_genistn
0.025890412999999998
vioscreen_glac
61.10030501
vioscreen_gltc
69.26159568
vioscreen_glucose
23.1081951
vioscreen_glutamic
10.51868579
vioscreen_glycine
1.872821965
vioscreen_glycitn
0.0
vioscreen_grams
1897.759075
vioscreen_hei2010_dairy
8.1
vioscreen_hei2010_empty_calories
18.5
vioscreen_hei2010_fatty_acids
5.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
73.0
vioscreen_hei_sodium
6.4
vioscreen_hei_sol_fat_alc_add_sug
18.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.31093148
vioscreen_inositol
0.051369862999999995
vioscreen_iron
7.292849021
vioscreen_isoleuc
2.18726004
vioscreen_isomalt
0.0
vioscreen_joules
6889.900685
vioscreen_juice_servings
0.0060799999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
10.60841115
vioscreen_legumes
0.011095891
vioscreen_leucine
3.8188764180000003
vioscreen_line_gi
405.26155819999997
vioscreen_low_fat_dairy_serving
0.00603
vioscreen_lutzeax
3522.777397
vioscreen_lycopene
3444.4359590000004
vioscreen_lysine
3.007863
vioscreen_m_egg
0.9995068690000001
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.052219177
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.052219177
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.000575342
vioscreen_magnes
338.1493793
vioscreen_maltitol
0.0
vioscreen_maltose
1.147863101
vioscreen_mangan
3.2708766989999996
vioscreen_mannitol
1.104766929
vioscreen_methhis3
0.134849318
vioscreen_methion
1.0111781290000001
vioscreen_mfa141
0.09265753300000001
vioscreen_mfa161
0.9917808220000001
vioscreen_mfa181
38.90016321
vioscreen_mfa201
0.50632876
vioscreen_mfa221
0.00430137
vioscreen_mfatot
40.65240796
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.77685012
vioscreen_nccglbr
91.34781678
vioscreen_nccglgr
63.89315069
vioscreen_niacin
15.806026600000001
vioscreen_niacineq
25.731533600000002
vioscreen_nitrogen
8.585122806000001
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.321616395
vioscreen_oxalic
298.1369863
vioscreen_oxalicm
303.0447346
vioscreen_pantothe
4.7792055730000005
vioscreen_pectins
6.108657292999999
vioscreen_pfa182
17.25309557
vioscreen_pfa183
1.282766933
vioscreen_pfa184
0.00279452
vioscreen_pfa204
0.092136989
vioscreen_pfa205
0.007561644
vioscreen_pfa225
0.00509589
vioscreen_pfa226
0.023479451000000002
vioscreen_pfatot
18.71131609
vioscreen_phenylal
2.45402715
vioscreen_phosphor
1114.743322
vioscreen_phytic
706.0916096
vioscreen_pinitol
0.0
vioscreen_potass
3385.49726
vioscreen_procdate
10/28/15
vioscreen_proline
3.375589282
vioscreen_protanim
23.39337008
vioscreen_protein
51.6203018
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.228135700000003
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
383.0
vioscreen_retinol
395.5615582
vioscreen_rgrain
0.08498630300000001
vioscreen_ribofla
1.4385753890000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.63515
vioscreen_satoco
0.0
vioscreen_selenium
74.1622164
vioscreen_serine
2.910000067
vioscreen_sfa100
0.7555889809999999
vioscreen_sfa120
1.052493244
vioscreen_sfa140
3.05627408
vioscreen_sfa160
15.96041042
vioscreen_sfa170
0.12336986
vioscreen_sfa180
5.807122886
vioscreen_sfa200
0.399123268
vioscreen_sfa220
0.70863012
vioscreen_sfa40
0.8497260109999999
vioscreen_sfa60
0.539068436
vioscreen_sfa80
0.42854794
vioscreen_sfatot
30.32035798
vioscreen_sodium
2102.687671
vioscreen_sorbitol
1.574602853
vioscreen_srvid
18936.0
vioscreen_starch
33.99783551
vioscreen_started
6/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.90498448
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.320438354
vioscreen_tfa161t
0.055671232
vioscreen_tfa181t
1.121287725
vioscreen_tfa182t
0.264246567
vioscreen_tgrain
0.134301371
vioscreen_thiamin
0.910054915
vioscreen_threonin
1.887013725
vioscreen_time
30.0
vioscreen_totaltfa
1.4818356030000002
vioscreen_totcla
0.12490412
vioscreen_totfolat
346.6743151
vioscreen_totsugar
85.35
vioscreen_tryptoph
0.5956438039999999
vioscreen_tyrosine
1.9117807880000002
vioscreen_user_id
18936.0
vioscreen_v_drkgr
0.792219188
vioscreen_v_orange
0.473972645
vioscreen_v_other
0.8198903540000001
vioscreen_v_potato
1.02786305
vioscreen_v_starcy
0.016547945
vioscreen_v_tomato
0.720821935
vioscreen_v_total
3.851287591
vioscreen_valine
2.648739499
vioscreen_veg5_day
7.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.7
vioscreen_visit
1.0
vioscreen_vita_iu
17787.771230000002
vioscreen_vita_rae
1218.948288
vioscreen_vita_re
2042.3342469999998
vioscreen_vitb12
2.096575342
vioscreen_vitb6
1.766575142
vioscreen_vitc
146.5594499
vioscreen_vitd
5.422438196
vioscreen_vitd2
0.0
vioscreen_vitd3
5.422438196
vioscreen_vitd_iu
216.8975278
vioscreen_vite_iu
23.54605629
vioscreen_vitk
239.86772259999998
vioscreen_water
1577.351712
vioscreen_weight
Not provided
vioscreen_wgrain
0.049315068
vioscreen_whole_grain_servings
0.049339999999999995
vioscreen_xylitol
0.042054800999999996
vioscreen_zinc
7.189863816
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
71.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)