American Gut Project; 10317.000027730
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633224
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027730
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27730
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
28.25
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/08/2015
collection month
June
collection season
Summer
collection time
14:35
collection_timestamp
2015-06-08 14:35
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am ambidextrous
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
66.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ba64eebe5485c3e91b37e47620f934fee2ef455b9d03f923d0e77b030d3f8ba98a4517ce8bc269c95a3d7092047f81bf02d8cef7055b8429caab8225e4a7ec06
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
37.4
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027730
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
ac9a0c813e0c1d90
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.39668638
vioscreen_addsugar
76.52605415
vioscreen_adsugtot
63.86709653
vioscreen_age
215.0
vioscreen_alanine
3.676410999
vioscreen_alcohol
0.074136985
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
161.80748069999999
vioscreen_alphtoce
6.806355014
vioscreen_alphtoco
5.231835938
vioscreen_arginine
4.156219232
vioscreen_ash
16.31772528
vioscreen_aspartam
0.0
vioscreen_aspartic
6.53265732
vioscreen_avcarb
276.63309080000005
vioscreen_bcodeid
Not provided
vioscreen_betacar
1058.759161
vioscreen_betacryp
12.14060226
vioscreen_betaine
257.3184932
vioscreen_betatoco
0.422876729
vioscreen_biochana
0.001945205
vioscreen_bmi
Not provided
vioscreen_caffeine
215.77833900000002
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.5232299999999999
vioscreen_calcium_servings
3.84521
vioscreen_calories
2200.238527
vioscreen_carbo
290.7046233
vioscreen_cholest
243.8528039
vioscreen_choline
244.116631
vioscreen_clac9t11
0.115123289
vioscreen_clat10c12
0.02021918
vioscreen_copper
1.255178122
vioscreen_coumest
0.022191782
vioscreen_cystine
1.179780976
vioscreen_d_cheese
1.090958938
vioscreen_d_milk
0.41254799200000003
vioscreen_d_tot_soym
1.52323299
vioscreen_d_total
1.52323299
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.152821914
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.555726268
vioscreen_discfat_oil
18.62093188
vioscreen_discfat_sol
47.2122485
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.12682192
vioscreen_f_nj_citmlb
0.126219177
vioscreen_f_nj_other
0.11027396199999999
vioscreen_f_nj_total
0.236575338
vioscreen_f_other
0.11027396199999999
vioscreen_f_total
0.237178081
vioscreen_fat
79.35449486
vioscreen_fiber
14.03076573
vioscreen_fibh2o
5.454192196
vioscreen_fibinso
8.551670858
vioscreen_finished
6/2/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
766.7954622999999
vioscreen_fol_nat
160.17328769999997
vioscreen_fol_syn
356.8497646
vioscreen_formontn
0.000191781
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.5
vioscreen_fructose
11.67835777
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
11.31575343
vioscreen_g_total
11.71520628
vioscreen_g_whl
0.399506828
vioscreen_galactos
0.371260259
vioscreen_gammtoco
13.70063008
vioscreen_gender
false
vioscreen_genistn
0.227452066
vioscreen_glac
164.6464683
vioscreen_gltc
173.52721530000002
vioscreen_glucose
13.02838586
vioscreen_glutamic
19.2447667
vioscreen_glycine
3.2681914869999997
vioscreen_glycitn
0.012383561999999999
vioscreen_grams
2961.6681510000003
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
11.7
vioscreen_hei2010_fatty_acids
0.7
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
0.3
vioscreen_hei2010_protien_foods
3.7
vioscreen_hei2010_refined_grains
0.0
vioscreen_hei2010_score
31.6
vioscreen_hei2010_sea_foods_plant_protiens
0.5
vioscreen_hei2010_sodium
4.6
vioscreen_hei2010_veg
1.6
vioscreen_hei2010_whole_fruit
1.3
vioscreen_hei2010_whole_grains
1.2
vioscreen_hei_drk_g_org_veg_leg
0.4
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.4
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
1.3
vioscreen_hei_oils
7.1
vioscreen_hei_sat_fat
3.2
vioscreen_hei_score
48.4
vioscreen_hei_sodium
3.7
vioscreen_hei_sol_fat_alc_add_sug
12.1
vioscreen_hei_veg
1.6
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
2.309123669
vioscreen_inositol
0.02852055
vioscreen_iron
17.74169922
vioscreen_isoleuc
3.9323014769999998
vioscreen_isomalt
0.0
vioscreen_joules
9205.79863
vioscreen_juice_servings
0.00121
vioscreen_lactitol
0.0
vioscreen_lactose
9.628794547
vioscreen_legumes
0.0
vioscreen_leucine
6.57550701
vioscreen_line_gi
584.6631421
vioscreen_low_fat_dairy_serving
0.04438
vioscreen_lutzeax
693.1940068
vioscreen_lycopene
794.4791096
vioscreen_lysine
5.251205318999999
vioscreen_m_egg
0.029561643999999998
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.43323289
vioscreen_m_meat
0.271397254
vioscreen_m_mpf
3.876137093
vioscreen_m_nutsd
0.17726026600000003
vioscreen_m_organ
0.0
vioscreen_m_poult
3.171479358
vioscreen_m_soy
0.01350685
vioscreen_magnes
249.6061216
vioscreen_maltitol
0.0
vioscreen_maltose
7.109043236000001
vioscreen_mangan
5.103370143999999
vioscreen_mannitol
0.024630139
vioscreen_methhis3
15.281753
vioscreen_methion
1.919808166
vioscreen_mfa141
0.12175344199999999
vioscreen_mfa161
1.082136933
vioscreen_mfa181
23.42468697
vioscreen_mfa201
0.210136999
vioscreen_mfa221
0.0072328769999999995
vioscreen_mfatot
25.04232663
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.231835938
vioscreen_nccglbr
247.05201200000002
vioscreen_nccglgr
172.807759
vioscreen_niacin
26.27597121
vioscreen_niacineq
43.15082941
vioscreen_nitrogen
13.65145147
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.634712282
vioscreen_oxalic
179.32604880000002
vioscreen_oxalicm
184.53807790000002
vioscreen_pantothe
4.341643702
vioscreen_pectins
0.7875343640000001
vioscreen_pfa182
13.94945152
vioscreen_pfa183
1.5439998259999999
vioscreen_pfa184
0.002191781
vioscreen_pfa204
0.16443834699999998
vioscreen_pfa205
0.01531507
vioscreen_pfa225
0.031616438
vioscreen_pfa226
0.042739727000000005
vioscreen_pfatot
15.84517872
vioscreen_phenylal
3.88076707
vioscreen_phosphor
1239.620291
vioscreen_phytic
557.6841182000001
vioscreen_pinitol
0.024547945
vioscreen_potass
1936.659418
vioscreen_procdate
10/28/15
vioscreen_proline
6.634110123999999
vioscreen_protanim
50.28843108
vioscreen_protein
84.02135059999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.73263057
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
414.0
vioscreen_retinol
448.1798801
vioscreen_rgrain
11.47490502
vioscreen_ribofla
1.9088221719999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.03827
vioscreen_satoco
0.0
vioscreen_selenium
147.8680758
vioscreen_serine
3.963780233
vioscreen_sfa100
0.94416437
vioscreen_sfa120
2.187725914
vioscreen_sfa140
3.7586850519999997
vioscreen_sfa160
15.21098566
vioscreen_sfa170
0.132109592
vioscreen_sfa180
6.880274106
vioscreen_sfa200
0.11879451199999999
vioscreen_sfa220
0.087589044
vioscreen_sfa40
0.9518629940000001
vioscreen_sfa60
0.551780889
vioscreen_sfa80
0.515068493
vioscreen_sfatot
31.7815336
vioscreen_sodium
3494.69863
vioscreen_sorbitol
0.070164385
vioscreen_srvid
18807.0
vioscreen_starch
166.658872
vioscreen_started
6/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.81178296
vioscreen_sweet_servings
1.8531400000000002
vioscreen_tagatose
1.483643749
vioscreen_tfa161t
0.06882192
vioscreen_tfa181t
2.197479332
vioscreen_tfa182t
0.427452066
vioscreen_tgrain
12.2052614
vioscreen_thiamin
2.326219031
vioscreen_threonin
3.156603502
vioscreen_time
36.0
vioscreen_totaltfa
2.7498903039999996
vioscreen_totcla
0.136082187
vioscreen_totfolat
517.0228596
vioscreen_totsugar
86.59299015
vioscreen_tryptoph
1.0136984629999999
vioscreen_tyrosine
2.903205934
vioscreen_user_id
18807.0
vioscreen_v_drkgr
0.024821918999999998
vioscreen_v_orange
0.045150684
vioscreen_v_other
0.045972599
vioscreen_v_potato
0.596109594
vioscreen_v_starcy
0.064410954
vioscreen_v_tomato
0.009506849
vioscreen_v_total
0.7859178520000001
vioscreen_valine
4.318247003
vioscreen_veg5_day
0.8
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
1.6
vioscreen_visit
1.0
vioscreen_vita_iu
3403.3277399999997
vioscreen_vita_rae
543.6574914
vioscreen_vita_re
639.1355736
vioscreen_vitb12
2.602630364
vioscreen_vitb6
1.346986452
vioscreen_vitc
22.41309263
vioscreen_vitd
3.913780568
vioscreen_vitd2
0.000630137
vioscreen_vitd3
3.913178243
vioscreen_vitd_iu
156.55122269999998
vioscreen_vite_iu
7.801424042000001
vioscreen_vitk
51.93213827
vioscreen_water
2529.176712
vioscreen_weight
Not provided
vioscreen_wgrain
0.730109646
vioscreen_whole_grain_servings
0.39951
vioscreen_xylitol
0.00430137
vioscreen_zinc
10.30235445
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
79.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)