10317.000020593; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633847
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020593
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20593
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1973.0
bmi
21.71
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-21
collection month
July
collection season
Summer
collection time
12:45
collection_timestamp
2015-07-21 12:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
154.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
ee4c100923e4bb4777cffeefd64d0d93016e6ab0801b583889da54c28c140f4aad13bd04498875dc8a03aa362ed185cdd214af5398299238d5eb847f129f13c0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020593
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b6aa3901fb8617fb
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.160520559
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.3272875639999997
vioscreen_addsugar
11.52887682
vioscreen_adsugtot
11.29931507
vioscreen_age
215.0
vioscreen_alanine
5.782109509
vioscreen_alcohol
2.440931514
vioscreen_alcohol_servings
0.16052
vioscreen_alphacar
4408.968493
vioscreen_alphtoce
11.05090566
vioscreen_alphtoco
10.64106914
vioscreen_arginine
6.316875802999999
vioscreen_ash
20.10243739
vioscreen_aspartam
0.0
vioscreen_aspartic
10.22227365
vioscreen_avcarb
103.1384418
vioscreen_bcodeid
Not provided
vioscreen_betacar
33274.20274
vioscreen_betacryp
32.73937018
vioscreen_betaine
135.2076413
vioscreen_betatoco
0.082958901
vioscreen_biochana
0.007123287
vioscreen_bmi
Not provided
vioscreen_caffeine
214.12401540000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.17920999999999998
vioscreen_calcium_servings
1.62592
vioscreen_calories
1363.9589039999998
vioscreen_carbo
126.1596747
vioscreen_cholest
1011.667295
vioscreen_choline
926.9689212000001
vioscreen_clac9t11
0.077315072
vioscreen_clat10c12
0.015835616
vioscreen_copper
13.9254535
vioscreen_coumest
0.0010136989999999999
vioscreen_cystine
1.478575657
vioscreen_d_cheese
0.000410959
vioscreen_d_milk
0.154136992
vioscreen_d_tot_soym
0.179205489
vioscreen_d_total
0.179205489
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.29197256
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.12849305
vioscreen_discfat_oil
10.71501365
vioscreen_discfat_sol
24.30835831
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000575342
vioscreen_f_citmlb
0.219945202
vioscreen_f_nj_citmlb
0.208356173
vioscreen_f_nj_other
0.28572603
vioscreen_f_nj_total
0.49408218200000004
vioscreen_f_other
0.28572603
vioscreen_f_total
0.505671211
vioscreen_fat
49.99142765
vioscreen_fiber
23.02254923
vioscreen_fibh2o
4.698629803
vioscreen_fibinso
18.45443734
vioscreen_finished
7/20/15
vioscreen_fish_servings
5.47538
vioscreen_fol_deqv
1055.629452
vioscreen_fol_nat
1033.923973
vioscreen_fol_syn
12.76249197
vioscreen_formontn
0.000630137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.0
vioscreen_fructose
9.019341957
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
1.2794794790000001
vioscreen_g_total
1.2794794790000001
vioscreen_g_whl
0.0
vioscreen_galactos
0.10202740199999999
vioscreen_gammtoco
3.6508213830000003
vioscreen_gender
false
vioscreen_genistn
0.33983559799999996
vioscreen_glac
42.54712382
vioscreen_gltc
49.57304152
vioscreen_glucose
9.884767632
vioscreen_glutamic
14.49473994
vioscreen_glycine
5.067286828
vioscreen_glycitn
0.086520548
vioscreen_grams
3655.915068
vioscreen_hei2010_dairy
1.0
vioscreen_hei2010_empty_calories
19.3
vioscreen_hei2010_fatty_acids
5.9
vioscreen_hei2010_fruit
2.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.5
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.3
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.0
vioscreen_hei_non_juice_frt
4.5
vioscreen_hei_oils
6.5
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
63.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.9524383960000002
vioscreen_inositol
0.083698633
vioscreen_iron
24.77400471
vioscreen_isoleuc
4.733424858
vioscreen_isomalt
0.0
vioscreen_joules
5706.805479
vioscreen_juice_servings
0.023180000000000003
vioscreen_lactitol
0.0
vioscreen_lactose
2.3518081459999998
vioscreen_legumes
0.096136987
vioscreen_leucine
8.384164972
vioscreen_line_gi
245.242637
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
15814.95616
vioscreen_lycopene
540.3947346
vioscreen_lysine
7.975206015
vioscreen_m_egg
0.075945209
vioscreen_m_fish_hi
2.373589168
vioscreen_m_fish_lo
0.746575342
vioscreen_m_frank
0.0
vioscreen_m_meat
0.622739693
vioscreen_m_mpf
10.47564346
vioscreen_m_nutsd
0.036082192
vioscreen_m_organ
6.175725732999999
vioscreen_m_poult
0.5570136920000001
vioscreen_m_soy
0.016109589
vioscreen_magnes
322.3816567
vioscreen_maltitol
0.0
vioscreen_maltose
4.304931306
vioscreen_mangan
5.912493311
vioscreen_mannitol
0.27167120100000003
vioscreen_methhis3
15.2221372
vioscreen_methion
2.537671233
vioscreen_mfa141
0.023808218
vioscreen_mfa161
1.194082182
vioscreen_mfa181
18.17002756
vioscreen_mfa201
0.47660275799999996
vioscreen_mfa221
0.427753438
vioscreen_mfatot
20.44251926
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4
vioscreen_natoco
10.64106914
vioscreen_nccglbr
82.74457406
vioscreen_nccglgr
57.87968215
vioscreen_niacin
39.93073898
vioscreen_niacineq
59.83973138
vioscreen_nitrogen
16.50016454
vioscreen_non_fried_fish_servings
5.47538
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.878712275
vioscreen_oxalic
633.38125
vioscreen_oxalicm
627.1769264
vioscreen_pantothe
16.20939908
vioscreen_pectins
5.666630324
vioscreen_pfa182
4.892767418
vioscreen_pfa183
0.7295342429999999
vioscreen_pfa184
0.095342464
vioscreen_pfa204
0.749945236
vioscreen_pfa205
0.30498628
vioscreen_pfa225
0.118082188
vioscreen_pfa226
0.6313972370000001
vioscreen_pfatot
8.645097121000001
vioscreen_phenylal
4.657478395
vioscreen_phosphor
1653.621233
vioscreen_phytic
184.01740149999998
vioscreen_pinitol
0.007671233
vioscreen_potass
3800.1236299999996
vioscreen_procdate
10/28/15
vioscreen_proline
4.44024608
vioscreen_protanim
85.30268622
vioscreen_protein
102.9664063
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.6643033
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
274.0
vioscreen_retinol
11640.44247
vioscreen_rgrain
0.6895889909999999
vioscreen_ribofla
5.760437848
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.75825
vioscreen_satoco
0.0
vioscreen_selenium
161.97479669999998
vioscreen_serine
4.387041149
vioscreen_sfa100
0.11375342599999999
vioscreen_sfa120
0.124986309
vioscreen_sfa140
0.7792603379999999
vioscreen_sfa160
8.455643327
vioscreen_sfa170
0.072520551
vioscreen_sfa180
4.766904564
vioscreen_sfa200
0.052575344
vioscreen_sfa220
0.039205477999999995
vioscreen_sfa40
0.125561649
vioscreen_sfa60
0.068767124
vioscreen_sfa80
0.043123292
vioscreen_sfatot
14.78492883
vioscreen_sodium
3295.073288
vioscreen_sorbitol
0.386054805
vioscreen_srvid
20190.0
vioscreen_starch
35.33038313
vioscreen_started
7/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.28945179
vioscreen_sweet_servings
0.16604000000000002
vioscreen_tagatose
0.910767103
vioscreen_tfa161t
0.070794521
vioscreen_tfa181t
1.596109636
vioscreen_tfa182t
0.210136978
vioscreen_tgrain
0.6895889909999999
vioscreen_thiamin
1.153342469
vioscreen_threonin
4.438301651000001
vioscreen_time
14.0
vioscreen_totaltfa
1.9464382219999998
vioscreen_totcla
0.094301375
vioscreen_totfolat
1046.686387
vioscreen_totsugar
42.17227633
vioscreen_tryptoph
1.196109719
vioscreen_tyrosine
3.627260475
vioscreen_user_id
20190.0
vioscreen_v_drkgr
1.378986181
vioscreen_v_orange
1.679150725
vioscreen_v_other
1.068219161
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.097671237
vioscreen_v_tomato
0.03690411
vioscreen_v_total
4.260904391
vioscreen_valine
5.646575342
vioscreen_veg5_day
7.9
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
8.5
vioscreen_visit
1.0
vioscreen_vita_iu
97958.76164
vioscreen_vita_rae
14598.36301
vioscreen_vita_re
17556.28493
vioscreen_vitb12
79.63909461
vioscreen_vitb6
3.351671193
vioscreen_vitc
172.6664491
vioscreen_vitd
12.62805544
vioscreen_vitd2
0.000191781
vioscreen_vitd3
12.62789089
vioscreen_vitd_iu
505.1222175
vioscreen_vite_iu
15.88063062
vioscreen_vitk
687.5497432
vioscreen_water
3377.92089
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.042136992000000005
vioscreen_zinc
13.942630300000001
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never