American Gut Project; 10317.000029511
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634053
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029511
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Not provided
age cat
60s
age years
69.0
age_corrected
69.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29511
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1946.0
bmi
24.86
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-30
collection month
July
collection season
Summer
collection time
09:00
collection_timestamp
2015-07-30 09:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
140.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
3280cbae3f5282d0386271e34708771f5045311b47aa1cd89d5f9e9bd54df04332eef1e5808a7855236cce53e6529730f77a22c900109a526cb9be30a5a2fe41
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
54.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029511
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
031768b62ae565c4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.391972623
vioscreen_a_cal
298.6139983
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.33443846
vioscreen_addsugar
7.879643354
vioscreen_adsugtot
6.685095382
vioscreen_age
215.0
vioscreen_alanine
3.0676710989999996
vioscreen_alcohol
37.39799872
vioscreen_alcohol_servings
2.39197
vioscreen_alphacar
6162.896575
vioscreen_alphtoce
12.46126124
vioscreen_alphtoco
11.25465807
vioscreen_arginine
3.5682466689999996
vioscreen_ash
18.9220556
vioscreen_aspartam
0.0
vioscreen_aspartic
5.84528842
vioscreen_avcarb
90.20136986
vioscreen_bcodeid
Not provided
vioscreen_betacar
20119.54795
vioscreen_betacryp
352.7842252
vioscreen_betaine
99.32428296
vioscreen_betatoco
0.214684933
vioscreen_biochana
0.010164384
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.062189999999999995
vioscreen_calcium_servings
1.33323
vioscreen_calories
1717.7321920000002
vioscreen_carbo
113.4972175
vioscreen_cholest
226.49935789999998
vioscreen_choline
325.5054795
vioscreen_clac9t11
0.151260271
vioscreen_clat10c12
0.044958904
vioscreen_copper
1.391068466
vioscreen_coumest
0.000027399999999999995
vioscreen_cystine
0.792219188
vioscreen_d_cheese
0.030684931000000002
vioscreen_d_milk
0.031506848999999996
vioscreen_d_tot_soym
0.062191783
vioscreen_d_total
0.062191783
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.033315067999999996
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.074054875
vioscreen_discfat_oil
41.26685039
vioscreen_discfat_sol
27.96402237
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.005232877
vioscreen_f_nj_citmlb
0.000684932
vioscreen_f_nj_other
0.11504110000000001
vioscreen_f_nj_total
0.11572603199999999
vioscreen_f_other
0.11504110000000001
vioscreen_f_total
0.12030138
vioscreen_fat
89.4685092
vioscreen_fiber
23.29780608
vioscreen_fibh2o
5.142657387
vioscreen_fibinso
18.2201921
vioscreen_finished
7/20/15
vioscreen_fish_servings
2.18615
vioscreen_fol_deqv
335.8855736
vioscreen_fol_nat
327.41832189999997
vioscreen_fol_syn
4.9754795860000005
vioscreen_formontn
0.001534247
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.2
vioscreen_fructose
10.8448483
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.22367121
vioscreen_g_total
1.183890481
vioscreen_g_whl
0.9602192079999999
vioscreen_galactos
0.12526026699999998
vioscreen_gammtoco
11.03104064
vioscreen_gender
false
vioscreen_genistn
0.056958907
vioscreen_glac
26.67188838
vioscreen_gltc
32.16668718
vioscreen_glucose
11.16536949
vioscreen_glutamic
9.565699914
vioscreen_glycine
2.662575249
vioscreen_glycitn
0.008657534
vioscreen_grams
2552.413356
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
16.6
vioscreen_hei2010_fatty_acids
7.8
vioscreen_hei2010_fruit
0.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
59.7
vioscreen_hei2010_sea_foods_plant_protiens
4.8
vioscreen_hei2010_sodium
0.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.8
vioscreen_hei2010_whole_grains
3.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.4
vioscreen_hei_grains
1.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
0.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.5
vioscreen_hei_score
48.3
vioscreen_hei_sodium
0.2
vioscreen_hei_sol_fat_alc_add_sug
11.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.9
vioscreen_height
Not provided
vioscreen_histidin
1.64167146
vioscreen_inositol
0.207205472
vioscreen_iron
10.29813784
vioscreen_isoleuc
2.46410999
vioscreen_isomalt
0.0
vioscreen_joules
7186.99589
vioscreen_juice_servings
0.00912
vioscreen_lactitol
0.0
vioscreen_lactose
0.45539726399999997
vioscreen_legumes
0.0
vioscreen_leucine
4.125588947
vioscreen_line_gi
195.7568921
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6827.907534
vioscreen_lycopene
2686.789726
vioscreen_lysine
4.264547771
vioscreen_m_egg
0.15890411
vioscreen_m_fish_hi
0.612000013
vioscreen_m_fish_lo
0.633835633
vioscreen_m_frank
0.018273973
vioscreen_m_meat
3.5861645839999996
vioscreen_m_mpf
5.19139722
vioscreen_m_nutsd
0.08347945
vioscreen_m_organ
0.135369863
vioscreen_m_poult
0.20578082399999997
vioscreen_m_soy
0.0004931509999999999
vioscreen_magnes
269.66140839999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.4233699430000002
vioscreen_mangan
2.982986074
vioscreen_mannitol
0.5885479229999999
vioscreen_methhis3
18.331724899999998
vioscreen_methion
1.286273862
vioscreen_mfa141
0.15558903300000002
vioscreen_mfa161
1.374493074
vioscreen_mfa181
32.0856967
vioscreen_mfa201
0.42690408799999996
vioscreen_mfa221
0.09884931
vioscreen_mfatot
34.20098727
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
11.25465807
vioscreen_nccglbr
72.35090432
vioscreen_nccglgr
50.60540454
vioscreen_niacin
17.84676798
vioscreen_niacineq
27.87581068
vioscreen_nitrogen
9.475808005
vioscreen_non_fried_fish_servings
2.18615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.3558082060000003
vioscreen_oxalic
258.3794521
vioscreen_oxalicm
202.5142979
vioscreen_pantothe
4.130712556000001
vioscreen_pectins
4.874438142
vioscreen_pfa182
18.874989300000003
vioscreen_pfa183
3.0398082989999997
vioscreen_pfa184
0.023095891
vioscreen_pfa204
0.085095899
vioscreen_pfa205
0.08863012199999999
vioscreen_pfa225
0.030301371
vioscreen_pfa226
0.17410957600000002
vioscreen_pfatot
22.38367134
vioscreen_phenylal
2.274301189
vioscreen_phosphor
939.8018836000001
vioscreen_phytic
326.72855310000006
vioscreen_pinitol
0.000191781
vioscreen_potass
3479.796575
vioscreen_procdate
10/28/15
vioscreen_proline
2.459643889
vioscreen_protanim
39.63709332
vioscreen_protein
58.26273009
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.62967279
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
275.0
vioscreen_retinol
443.0888699
vioscreen_rgrain
0.332438367
vioscreen_ribofla
1.084547905
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.27945
vioscreen_satoco
0.0
vioscreen_selenium
73.05969606
vioscreen_serine
2.30430139
vioscreen_sfa100
0.490794519
vioscreen_sfa120
0.514821886
vioscreen_sfa140
1.9896711790000001
vioscreen_sfa160
14.59334065
vioscreen_sfa170
0.13756165199999998
vioscreen_sfa180
6.346355281
vioscreen_sfa200
0.207780854
vioscreen_sfa220
0.149205487
vioscreen_sfa40
0.558684926
vioscreen_sfa60
0.34610959399999996
vioscreen_sfa80
0.209726057
vioscreen_sfatot
25.601945100000002
vioscreen_sodium
3390.574315
vioscreen_sorbitol
0.072136991
vioscreen_srvid
20189.0
vioscreen_starch
30.66109803
vioscreen_started
7/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.65578312
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.002849315
vioscreen_tfa161t
0.041205478999999996
vioscreen_tfa181t
1.8050684259999998
vioscreen_tfa182t
0.377917815
vioscreen_tgrain
1.089452038
vioscreen_thiamin
1.075479502
vioscreen_threonin
2.46172594
vioscreen_time
17.0
vioscreen_totaltfa
2.2955613230000003
vioscreen_totcla
0.19482196100000002
vioscreen_totfolat
332.3937714
vioscreen_totsugar
37.519012200000006
vioscreen_tryptoph
0.601534282
vioscreen_tyrosine
1.779205406
vioscreen_user_id
20189.0
vioscreen_v_drkgr
0.576356151
vioscreen_v_orange
1.285041119
vioscreen_v_other
3.38062995
vioscreen_v_potato
0.59463016
vioscreen_v_starcy
0.15794521
vioscreen_v_tomato
0.532931519
vioscreen_v_total
6.527561803999999
vioscreen_valine
2.718438804
vioscreen_veg5_day
13.0
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
13.1
vioscreen_visit
1.0
vioscreen_vita_iu
40440.90685
vioscreen_vita_rae
2391.2071920000003
vioscreen_vita_re
4339.3226030000005
vioscreen_vitb12
4.9250959839999995
vioscreen_vitb6
2.52520568
vioscreen_vitc
250.6731164
vioscreen_vitd
4.339863147
vioscreen_vitd2
0.0
vioscreen_vitd3
4.339863147
vioscreen_vitd_iu
173.5945259
vioscreen_vite_iu
16.79161895
vioscreen_vitk
318.0394478
vioscreen_water
2245.334932
vioscreen_weight
Not provided
vioscreen_wgrain
0.757013692
vioscreen_whole_grain_servings
0.9602200000000001
vioscreen_xylitol
0.09139726199999999
vioscreen_zinc
9.596793397
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
69.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)