American Gut Project; 10317.000029530
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633740
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029530
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29530
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1957.0
bmi
21.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/02/2015
collection month
July
collection season
Summer
collection time
07:45
collection_timestamp
2015-07-02 07:45
consume_animal_products_abx
Not sure
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Occasionally (1-2 times/week)
country
Isle of Man
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
82.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Isle of Man
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
bd43d869d645f0d34b04640e69b2ef248cad10078885624cb94cab47ffb2d5b0f0c392e7fbeaf0f196fc1bfa0eb9d5f14742269993394a652bfe4098d409a481
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
54.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-4.7
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Not provided
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Not provided
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029530
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d60fb4f000f294a6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.065972482
vioscreen_addsugar
12.75405474
vioscreen_adsugtot
11.76515143
vioscreen_age
215.0
vioscreen_alanine
3.394986087
vioscreen_alcohol
0.0033150690000000003
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
2879.196918
vioscreen_alphtoce
12.12734375
vioscreen_alphtoco
11.59191594
vioscreen_arginine
3.9230405210000003
vioscreen_ash
15.29490448
vioscreen_aspartam
0.0
vioscreen_aspartic
6.502547089
vioscreen_avcarb
93.06892123
vioscreen_bcodeid
Not provided
vioscreen_betacar
18955.42877
vioscreen_betacryp
58.42750963
vioscreen_betaine
62.02086901
vioscreen_betatoco
0.14712329
vioscreen_biochana
0.001506849
vioscreen_bmi
Not provided
vioscreen_caffeine
132.36553940000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.28649
vioscreen_calcium_servings
1.25416
vioscreen_calories
1306.357363
vioscreen_carbo
113.1196811
vioscreen_cholest
368.37696919999996
vioscreen_choline
407.89375
vioscreen_clac9t11
0.04731507
vioscreen_clat10c12
0.014273973999999998
vioscreen_copper
1.669616365
vioscreen_coumest
0.071424657
vioscreen_cystine
0.8977808290000001
vioscreen_d_cheese
0.23336986399999998
vioscreen_d_milk
0.053123286
vioscreen_d_tot_soym
0.28649315
vioscreen_d_total
0.28649315
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.134301382
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8618904009999999
vioscreen_discfat_oil
36.75326413
vioscreen_discfat_sol
14.70128692
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000383562
vioscreen_f_citmlb
0.355616447
vioscreen_f_nj_citmlb
0.347123279
vioscreen_f_nj_other
0.39928768600000003
vioscreen_f_nj_total
0.74643839
vioscreen_f_other
0.39928768600000003
vioscreen_f_total
0.7549588970000001
vioscreen_fat
70.20333904
vioscreen_fiber
20.0521364
vioscreen_fibh2o
5.797204757
vioscreen_fibinso
14.40087623
vioscreen_finished
6/30/15
vioscreen_fish_servings
4.01731
vioscreen_fol_deqv
288.4409675
vioscreen_fol_nat
267.6848031
vioscreen_fol_syn
12.21367054
vioscreen_formontn
0.000630137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.5
vioscreen_fructose
9.285341529
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.6585753560000001
vioscreen_g_total
1.656191975
vioscreen_g_whl
0.997616452
vioscreen_galactos
0.089424666
vioscreen_gammtoco
4.671288059
vioscreen_gender
false
vioscreen_genistn
0.079479458
vioscreen_glac
45.63090218
vioscreen_gltc
52.17134525
vioscreen_glucose
9.727013324
vioscreen_glutamic
10.08443854
vioscreen_glycine
2.875589616
vioscreen_glycitn
0.013863015
vioscreen_grams
2549.988699
vioscreen_hei2010_dairy
1.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.6
vioscreen_hei_grains
2.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.7
vioscreen_hei_score
70.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.5
vioscreen_height
Not provided
vioscreen_histidin
1.732493445
vioscreen_inositol
0.063479452
vioscreen_iron
8.469479077
vioscreen_isoleuc
2.89315035
vioscreen_isomalt
0.0
vioscreen_joules
5465.8
vioscreen_juice_servings
0.01704
vioscreen_lactitol
0.0
vioscreen_lactose
0.843698664
vioscreen_legumes
0.0
vioscreen_leucine
4.827424015
vioscreen_line_gi
241.2943065
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3206.787671
vioscreen_lycopene
1064.700342
vioscreen_lysine
4.752712636
vioscreen_m_egg
1.004438343
vioscreen_m_fish_hi
1.391424644
vioscreen_m_fish_lo
0.8979726290000001
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
1.255643829
vioscreen_m_mpf
4.99504127
vioscreen_m_nutsd
0.560684957
vioscreen_m_organ
0.315835613
vioscreen_m_poult
1.125013712
vioscreen_m_soy
0.002821918
vioscreen_magnes
224.0098245
vioscreen_maltitol
0.0
vioscreen_maltose
3.140191901
vioscreen_mangan
3.29068453
vioscreen_mannitol
0.260958904
vioscreen_methhis3
15.91731459
vioscreen_methion
1.564328714
vioscreen_mfa141
0.079205489
vioscreen_mfa161
1.30243848
vioscreen_mfa181
33.27418932
vioscreen_mfa201
0.448547949
vioscreen_mfa221
0.241260267
vioscreen_mfatot
35.48345195
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.59191594
vioscreen_nccglbr
80.57764341
vioscreen_nccglgr
56.360140200000004
vioscreen_niacin
16.79920805
vioscreen_niacineq
28.7543049
vioscreen_nitrogen
10.16947908
vioscreen_non_fried_fish_servings
4.01731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.950684932
vioscreen_oxalic
181.3919735
vioscreen_oxalicm
173.03225600000002
vioscreen_pantothe
5.739561482999999
vioscreen_pectins
4.300493298
vioscreen_pfa182
10.30462998
vioscreen_pfa183
1.209725994
vioscreen_pfa184
0.05589041
vioscreen_pfa204
0.20939724
vioscreen_pfa205
0.19767127899999998
vioscreen_pfa225
0.075698633
vioscreen_pfa226
0.412246537
vioscreen_pfatot
12.60383267
vioscreen_phenylal
2.70904123
vioscreen_phosphor
927.2323630000001
vioscreen_phytic
336.8846533
vioscreen_pinitol
0.003479452
vioscreen_potass
2465.70976
vioscreen_procdate
10/28/15
vioscreen_proline
2.7429863080000003
vioscreen_protanim
46.78120719
vioscreen_protein
62.79380886
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.01364378
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
341.0
vioscreen_retinol
774.6130137
vioscreen_rgrain
0.600054806
vioscreen_ribofla
1.38616425
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.62331
vioscreen_satoco
0.0
vioscreen_selenium
86.40582727
vioscreen_serine
2.8800550489999996
vioscreen_sfa100
0.159369868
vioscreen_sfa120
0.19030138800000002
vioscreen_sfa140
0.9517260409999999
vioscreen_sfa160
10.70024548
vioscreen_sfa170
0.056767127
vioscreen_sfa180
3.685068292
vioscreen_sfa200
0.190493126
vioscreen_sfa220
0.153397254
vioscreen_sfa40
0.17128766199999998
vioscreen_sfa60
0.093397261
vioscreen_sfa80
0.063808216
vioscreen_sfatot
16.61756207
vioscreen_sodium
2612.670719
vioscreen_sorbitol
0.308602759
vioscreen_srvid
20026.0
vioscreen_starch
38.9993445
vioscreen_started
6/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.52668557
vioscreen_sweet_servings
0.08327000000000001
vioscreen_tagatose
0.39052053
vioscreen_tfa161t
0.039260274
vioscreen_tfa181t
0.85660275
vioscreen_tfa182t
0.188520541
vioscreen_tgrain
1.597314955
vioscreen_thiamin
0.8196165320000001
vioscreen_threonin
2.647397227
vioscreen_time
24.0
vioscreen_totaltfa
1.089424698
vioscreen_totcla
0.061452060999999995
vioscreen_totfolat
279.8984589
vioscreen_totsugar
37.01172678
vioscreen_tryptoph
0.718136973
vioscreen_tyrosine
2.138575389
vioscreen_user_id
20026.0
vioscreen_v_drkgr
0.719890438
vioscreen_v_orange
1.133123278
vioscreen_v_other
0.8223835979999999
vioscreen_v_potato
0.192082193
vioscreen_v_starcy
0.039452056
vioscreen_v_tomato
0.21424658800000002
vioscreen_v_total
3.1211509389999996
vioscreen_valine
3.25043845
vioscreen_veg5_day
6.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.2
vioscreen_visit
1.0
vioscreen_vita_iu
36622.69863
vioscreen_vita_rae
2476.63339
vioscreen_vita_re
4178.653767
vioscreen_vitb12
7.564137414
vioscreen_vitb6
1.70613696
vioscreen_vitc
134.0148438
vioscreen_vitd
8.40304139
vioscreen_vitd2
0.000273973
vioscreen_vitd3
8.40276715
vioscreen_vitd_iu
336.12165560000005
vioscreen_vite_iu
17.2986288
vioscreen_vitk
184.8014769
vioscreen_water
2300.2022260000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.9972602740000001
vioscreen_whole_grain_servings
0.9976200000000001
vioscreen_xylitol
0.029698631
vioscreen_zinc
7.6701078229999995
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)