American Gut Project; 10317.000030067
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634108
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:19Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030067
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030067
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1963.0
bmi
22.27
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/10/2015
collection month
August
collection season
Summer
collection time
15:30
collection_timestamp
2015-08-10 15:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
Denmark
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
35.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
689afd520b0ebedbc08ac41e38f37137b4647fd84de9d80fb570bfeb7ed9c807318ad892b3efbf1ac257e991db65dcecabc499bc66943c0b2f821a5ec2c5a86b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
50.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030067
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
97f7f17cb3a97d6a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.64627301
vioscreen_addsugar
57.09626498
vioscreen_adsugtot
52.70714362
vioscreen_age
215.0
vioscreen_alanine
2.135260261
vioscreen_alcohol
0.0000822
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
835.6166952000001
vioscreen_alphtoce
6.286986301000001
vioscreen_alphtoco
5.706684771
vioscreen_arginine
2.346849415
vioscreen_ash
23.63326199
vioscreen_aspartam
976.6879280999999
vioscreen_aspartic
4.584054607
vioscreen_avcarb
257.0841182
vioscreen_bcodeid
Not provided
vioscreen_betacar
7367.930137
vioscreen_betacryp
55.924759200000004
vioscreen_betaine
228.8243793
vioscreen_betatoco
0.20282195600000003
vioscreen_biochana
0.005232877
vioscreen_bmi
Not provided
vioscreen_caffeine
780.5816781000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.8824400000000001
vioscreen_calcium_servings
3.7069
vioscreen_calories
1472.459418
vioscreen_carbo
298.8103168
vioscreen_cholest
15.26120505
vioscreen_choline
265.87482880000005
vioscreen_clac9t11
0.010136986
vioscreen_clat10c12
0.0014246579999999999
vioscreen_copper
1.5484655930000002
vioscreen_coumest
0.440082205
vioscreen_cystine
0.575342508
vioscreen_d_cheese
0.024164382999999998
vioscreen_d_milk
0.355698635
vioscreen_d_tot_soym
1.88243843
vioscreen_d_total
1.88243843
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
1.354849369
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.627890349
vioscreen_discfat_oil
2.81704135
vioscreen_discfat_sol
5.426110004
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.005506849
vioscreen_f_citmlb
0.947452075
vioscreen_f_nj_citmlb
0.8975068390000001
vioscreen_f_nj_other
2.6967124630000003
vioscreen_f_nj_total
3.594219218
vioscreen_f_other
2.698438503
vioscreen_f_total
3.6458904110000003
vioscreen_fat
15.57399802
vioscreen_fiber
41.66835938
vioscreen_fibh2o
14.17380806
vioscreen_fibinso
27.82154056
vioscreen_finished
8/6/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
530.996875
vioscreen_fol_nat
369.2763271
vioscreen_fol_syn
95.1202911
vioscreen_formontn
0.00060274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.1
vioscreen_frtsumm
7.3
vioscreen_fructose
38.74701413
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.586547935
vioscreen_g_total
4.4016715269999995
vioscreen_g_whl
3.815096252
vioscreen_galactos
1.943917721
vioscreen_gammtoco
4.410959573
vioscreen_gender
false
vioscreen_genistn
1.189123452
vioscreen_glac
121.5241973
vioscreen_gltc
137.94719609999999
vioscreen_glucose
37.53665454
vioscreen_glutamic
10.42002756
vioscreen_glycine
1.593287638
vioscreen_glycitn
0.14654795
vioscreen_grams
4987.739726
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
5.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
0.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.3
vioscreen_hei2010_sea_foods_plant_protiens
1.8
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
1.2
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
1.6
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
78.2
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.289424698
vioscreen_inositol
0.299698649
vioscreen_iron
13.99040828
vioscreen_isoleuc
2.166054922
vioscreen_isomalt
0.0
vioscreen_joules
6160.771918
vioscreen_juice_servings
0.10334000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
26.71123181
vioscreen_legumes
0.0027123290000000003
vioscreen_leucine
3.9593696489999997
vioscreen_line_gi
677.5161387
vioscreen_low_fat_dairy_serving
1.87353
vioscreen_lutzeax
4455.234247
vioscreen_lycopene
5614.221233
vioscreen_lysine
3.148630137
vioscreen_m_egg
0.003753425
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
0.326027397
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.090547943
vioscreen_magnes
446.88480310000006
vioscreen_maltitol
0.0
vioscreen_maltose
4.411287992
vioscreen_mangan
7.028384525
vioscreen_mannitol
0.45934243399999997
vioscreen_methhis3
0.007479451999999999
vioscreen_methion
1.010684998
vioscreen_mfa141
0.001452055
vioscreen_mfa161
0.136136972
vioscreen_mfa181
4.7532597789999995
vioscreen_mfa201
0.046739725
vioscreen_mfa221
0.0007123289999999999
vioscreen_mfatot
5.002108638999999
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.662740127
vioscreen_nccglbr
191.1631207
vioscreen_nccglgr
133.7040454
vioscreen_niacin
18.99566968
vioscreen_niacineq
26.45882384
vioscreen_nitrogen
9.454793852
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.463095845
vioscreen_oxalic
148.99702480000002
vioscreen_oxalicm
170.1152825
vioscreen_pantothe
8.66457553
vioscreen_pectins
5.940767471
vioscreen_pfa182
3.063918357
vioscreen_pfa183
0.46016436
vioscreen_pfa184
0.0000822
vioscreen_pfa204
0.000219178
vioscreen_pfa205
0.0024657529999999998
vioscreen_pfa225
0.000383562
vioscreen_pfa226
0.0
vioscreen_pfatot
3.532328901
vioscreen_phenylal
2.374739806
vioscreen_phosphor
1409.644007
vioscreen_phytic
812.7817637
vioscreen_pinitol
0.007095891
vioscreen_potass
4698.587671
vioscreen_procdate
10/28/15
vioscreen_proline
4.128054768
vioscreen_protanim
20.85238388
vioscreen_protein
57.94709439
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.06777879
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
223.0
vioscreen_retinol
139.0026113
vioscreen_rgrain
1.1612604009999998
vioscreen_ribofla
3.340081871
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.52189
vioscreen_satoco
0.097643834
vioscreen_selenium
76.66644371
vioscreen_serine
2.496054788
vioscreen_sfa100
0.113260264
vioscreen_sfa120
0.374027409
vioscreen_sfa140
0.400191801
vioscreen_sfa160
2.492877114
vioscreen_sfa170
0.005315069
vioscreen_sfa180
0.72863017
vioscreen_sfa200
0.037369869
vioscreen_sfa220
0.057753424000000005
vioscreen_sfa40
0.094410946
vioscreen_sfa60
0.043890412000000004
vioscreen_sfa80
0.08863013300000001
vioscreen_sfatot
4.584958596
vioscreen_sodium
2012.168664
vioscreen_sorbitol
1.919479746
vioscreen_srvid
20343.0
vioscreen_starch
63.53401113
vioscreen_started
8/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0.0
vioscreen_sucrose
59.62452911
vioscreen_sweet_servings
0.17897000000000002
vioscreen_tagatose
11.15068493
vioscreen_tfa161t
0.0007123289999999999
vioscreen_tfa181t
0.654027401
vioscreen_tfa182t
0.113780819
vioscreen_tgrain
4.43062995
vioscreen_thiamin
1.65597275
vioscreen_threonin
1.83964409
vioscreen_time
15.0
vioscreen_totaltfa
0.9675889940000001
vioscreen_totcla
0.011945205
vioscreen_totfolat
464.3966182
vioscreen_totsugar
171.3521618
vioscreen_tryptoph
0.449287728
vioscreen_tyrosine
1.792164424
vioscreen_user_id
20343.0
vioscreen_v_drkgr
0.505068426
vioscreen_v_orange
0.25641097
vioscreen_v_other
0.396328777
vioscreen_v_potato
0.16956164199999998
vioscreen_v_starcy
0.7911232309999999
vioscreen_v_tomato
0.903205516
vioscreen_v_total
3.021671327
vioscreen_valine
3.000356178
vioscreen_veg5_day
5.6
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.0
vioscreen_visit
1.0
vioscreen_vita_iu
13484.31918
vioscreen_vita_rae
790.1457192
vioscreen_vita_re
1441.2875
vioscreen_vitb12
3.0336439160000004
vioscreen_vitb6
2.298000054
vioscreen_vitc
178.3133669
vioscreen_vitd
1.290712289
vioscreen_vitd2
0.0
vioscreen_vitd3
1.290712289
vioscreen_vitd_iu
51.62849155
vioscreen_vite_iu
8.468822908
vioscreen_vitk
173.84927230000002
vioscreen_water
4597.793836
vioscreen_weight
Not provided
vioscreen_wgrain
3.269424564
vioscreen_whole_grain_servings
3.8151
vioscreen_xylitol
0.060493145
vioscreen_zinc
10.21819149
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Regularly (3-5 times/week)