American Gut Project; 10317.000023801
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633100
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023801
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23801
antibiotic_history
Year
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1956.0
bmi
24.2
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-04-28
collection month
April
collection season
Spring
collection time
09:05
collection_timestamp
2015-04-28 09:05
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
214.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
8a24c54747d782c68d270c2d5d09394d389cd076df260839f25b507b37a57c472162f675de4e309866c80ac7a9a4d159bbb75d4e73e19edb9786f82cf3e753df
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-121.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023801
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f386b8acc352e7d5
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.104767128
vioscreen_a_cal
12.91161708
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.345999773
vioscreen_addsugar
24.88873876
vioscreen_adsugtot
23.02890357
vioscreen_age
215.0
vioscreen_alanine
3.340849074
vioscreen_alcohol
1.6146574669999998
vioscreen_alcohol_servings
0.10477
vioscreen_alphacar
1447.368493
vioscreen_alphtoce
9.824795323
vioscreen_alphtoco
9.289288581000001
vioscreen_arginine
3.9095890410000003
vioscreen_ash
14.94372592
vioscreen_aspartam
0.0
vioscreen_aspartic
6.647343215
vioscreen_avcarb
112.26235020000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
7217.291781
vioscreen_betacryp
142.597271
vioscreen_betaine
51.60463934
vioscreen_betatoco
0.25720545100000003
vioscreen_biochana
0.015397261
vioscreen_bmi
Not provided
vioscreen_caffeine
254.81763700000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.93797
vioscreen_calcium_servings
2.9329
vioscreen_calories
1180.657192
vioscreen_carbo
129.6357877
vioscreen_cholest
159.7985017
vioscreen_choline
306.29841610000005
vioscreen_clac9t11
0.028958906
vioscreen_clat10c12
0.004904109
vioscreen_copper
1.0147669959999999
vioscreen_coumest
0.073753425
vioscreen_cystine
0.7503288370000001
vioscreen_d_cheese
0.073232881
vioscreen_d_milk
1.081479425
vioscreen_d_tot_soym
1.9379725630000002
vioscreen_d_total
1.9379725630000002
vioscreen_d_yogurt
0.7832603140000001
vioscreen_daidzein
0.091753429
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.5147671220000001
vioscreen_discfat_oil
23.53693279
vioscreen_discfat_sol
8.13569871
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001150685
vioscreen_f_citmlb
0.492219146
vioscreen_f_nj_citmlb
0.485452061
vioscreen_f_nj_other
1.616958911
vioscreen_f_nj_total
2.102410972
vioscreen_f_other
1.616958911
vioscreen_f_total
2.109178183
vioscreen_fat
47.17586152
vioscreen_fiber
17.37411039
vioscreen_fibh2o
4.940109629
vioscreen_fibinso
12.48556159
vioscreen_finished
4/24/15
vioscreen_fish_servings
3.11558
vioscreen_fol_deqv
311.008583
vioscreen_fol_nat
285.7575557
vioscreen_fol_syn
14.84315069
vioscreen_formontn
0.0046575340000000005
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
4.2
vioscreen_fructose
17.19966957
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.6213424470000001
vioscreen_g_total
0.6213424470000001
vioscreen_g_whl
0.0
vioscreen_galactos
1.033589068
vioscreen_gammtoco
4.264136746
vioscreen_gender
false
vioscreen_genistn
0.052136987999999995
vioscreen_glac
40.50896297
vioscreen_gltc
44.97704409
vioscreen_glucose
12.07684878
vioscreen_glutamic
12.33230014
vioscreen_glycine
2.8227669489999996
vioscreen_glycitn
0.004273972
vioscreen_grams
3420.085616
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.0
vioscreen_hei_score
83.4
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.8655616240000001
vioscreen_inositol
0.048739729
vioscreen_iron
6.005890142999999
vioscreen_isoleuc
3.176876538
vioscreen_isomalt
0.0
vioscreen_joules
4939.868836
vioscreen_juice_servings
0.01353
vioscreen_lactitol
0.0
vioscreen_lactose
25.15800246
vioscreen_legumes
0.009506849
vioscreen_leucine
5.470520856
vioscreen_line_gi
219.751905
vioscreen_low_fat_dairy_serving
1.8461900000000002
vioscreen_lutzeax
4348.783904
vioscreen_lycopene
5170.043836
vioscreen_lysine
5.171972322
vioscreen_m_egg
0.292767125
vioscreen_m_fish_hi
1.136520595
vioscreen_m_fish_lo
0.638876719
vioscreen_m_frank
0.014356164
vioscreen_m_meat
0.207643838
vioscreen_m_mpf
3.901095957
vioscreen_m_nutsd
2.18673982
vioscreen_m_organ
0.0
vioscreen_m_poult
1.903671306
vioscreen_m_soy
0.001452055
vioscreen_magnes
288.7404538
vioscreen_maltitol
0.0
vioscreen_maltose
0.8907122890000001
vioscreen_mangan
3.331671393
vioscreen_mannitol
0.8046849079999999
vioscreen_methhis3
14.66454811
vioscreen_methion
1.685342365
vioscreen_mfa141
0.026904111
vioscreen_mfa161
0.749753435
vioscreen_mfa181
21.82167032
vioscreen_mfa201
0.393616433
vioscreen_mfa221
0.183671235
vioscreen_mfatot
23.29997325
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
9.289288581000001
vioscreen_nccglbr
65.01130672
vioscreen_nccglgr
45.471371999999995
vioscreen_niacin
15.9588506
vioscreen_niacineq
27.97359
vioscreen_nitrogen
10.91717814
vioscreen_non_fried_fish_servings
3.11558
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.047397227
vioscreen_oxalic
311.88687930000003
vioscreen_oxalicm
321.7964255
vioscreen_pantothe
5.28600004
vioscreen_pectins
3.939396939
vioscreen_pfa182
8.32583476
vioscreen_pfa183
0.47293141
vioscreen_pfa184
0.042657535999999996
vioscreen_pfa204
0.131369855
vioscreen_pfa205
0.145369856
vioscreen_pfa225
0.06682192099999999
vioscreen_pfa226
0.32030138
vioscreen_pfatot
9.587205025
vioscreen_phenylal
3.064356472
vioscreen_phosphor
1116.301884
vioscreen_phytic
432.7189212
vioscreen_pinitol
0.000164384
vioscreen_potass
3023.7
vioscreen_procdate
10/28/15
vioscreen_proline
4.25013712
vioscreen_protanim
51.07221747
vioscreen_protein
67.2658658
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.17953633
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
463.0
vioscreen_retinol
224.5962329
vioscreen_rgrain
0.478821888
vioscreen_ribofla
1.784959098
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.71342
vioscreen_satoco
0.0
vioscreen_selenium
87.73876819
vioscreen_serine
3.317835309
vioscreen_sfa100
0.12115067800000001
vioscreen_sfa120
0.184602753
vioscreen_sfa140
0.659397198
vioscreen_sfa160
6.778630003
vioscreen_sfa170
0.033123288
vioscreen_sfa180
2.179397207
vioscreen_sfa200
0.20750686399999999
vioscreen_sfa220
0.347999991
vioscreen_sfa40
0.128849312
vioscreen_sfa60
0.074000001
vioscreen_sfa80
0.057999999999999996
vioscreen_sfatot
11.07372512
vioscreen_sodium
1900.5599320000001
vioscreen_sorbitol
1.175150665
vioscreen_srvid
18583.0
vioscreen_starch
16.50663126
vioscreen_started
4/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.45142337
vioscreen_sweet_servings
0.047580000000000004
vioscreen_tagatose
5.7815068489999994
vioscreen_tfa161t
0.011013698999999998
vioscreen_tfa181t
0.33934246700000004
vioscreen_tfa182t
0.068986297
vioscreen_tgrain
0.556493137
vioscreen_thiamin
0.732027488
vioscreen_threonin
2.762000013
vioscreen_time
19.0
vioscreen_totaltfa
0.425260277
vioscreen_totcla
0.034438361
vioscreen_totfolat
300.6007063
vioscreen_totsugar
86.85079195
vioscreen_tryptoph
0.721178112
vioscreen_tyrosine
2.568383622
vioscreen_user_id
18583.0
vioscreen_v_drkgr
0.54301369
vioscreen_v_orange
0.338136981
vioscreen_v_other
0.9091507590000001
vioscreen_v_potato
0.08591781
vioscreen_v_starcy
0.170876709
vioscreen_v_tomato
0.25317809199999997
vioscreen_v_total
2.300328754
vioscreen_valine
3.765205613
vioscreen_veg5_day
4.5
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
14098.673969999998
vioscreen_vita_rae
892.2868151
vioscreen_vita_re
1559.974829
vioscreen_vitb12
4.2926577219999995
vioscreen_vitb6
1.433588901
vioscreen_vitc
65.45090432
vioscreen_vitd
9.081288126
vioscreen_vitd2
0.000219178
vioscreen_vitd3
9.081096158
vioscreen_vitd_iu
363.251525
vioscreen_vite_iu
13.83254762
vioscreen_vitk
173.0854773
vioscreen_water
3165.402055
vioscreen_weight
Not provided
vioscreen_wgrain
0.077671234
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.024082193999999998
vioscreen_zinc
7.506710857000001
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never