American Gut Project; 10317.000020537
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633362
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:29:44Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020537
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
25.0
age_corrected
25.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20537
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1990.0
bmi
20.01
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/05/2015
collection month
June
collection season
Summer
collection time
10:40
collection_timestamp
2015-06-05 10:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
Canada
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
9.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
173.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1f2e74a29ac2260ae36348be6980101dfa410b7fc44a2d5c37ea580c7863431352afbb4a0bc4c4e3186c5b70ccbd9447119c36f8a94d0da1b450628515dd565b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
Month
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
More than three
roommates_in_study
Not sure
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000020537
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
f7aa4535b61b9152
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.848356231
vioscreen_a_cal
225.25040669999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.541178162000001
vioscreen_addsugar
49.58781036
vioscreen_adsugtot
42.16684771
vioscreen_age
215.0
vioscreen_alanine
3.4823299039999998
vioscreen_alcohol
28.25523331
vioscreen_alcohol_servings
1.8483599999999998
vioscreen_alphacar
2004.0556510000001
vioscreen_alphtoce
19.42301076
vioscreen_alphtoco
17.98632946
vioscreen_arginine
4.382850292
vioscreen_ash
22.85375375
vioscreen_aspartam
10.70342466
vioscreen_aspartic
7.6885488010000005
vioscreen_avcarb
232.36988440000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
11463.380140000001
vioscreen_betacryp
291.93996150000004
vioscreen_betaine
127.7737372
vioscreen_betatoco
0.465726084
vioscreen_biochana
0.015205479
vioscreen_bmi
Not provided
vioscreen_caffeine
139.0941139
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.78214
vioscreen_calcium_servings
4.06551
vioscreen_calories
2472.391438
vioscreen_carbo
262.1391267
vioscreen_cholest
252.4291952
vioscreen_choline
374.74927230000003
vioscreen_clac9t11
0.067835617
vioscreen_clat10c12
0.012465753000000001
vioscreen_copper
1.866876639
vioscreen_coumest
0.084575345
vioscreen_cystine
0.95200003
vioscreen_d_cheese
0.9331781259999999
vioscreen_d_milk
0.260164381
vioscreen_d_tot_soym
1.7821371
vioscreen_d_total
1.7821371
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.398219069
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.305863054
vioscreen_discfat_oil
64.56751926
vioscreen_discfat_sol
27.874191999999997
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002547945
vioscreen_f_citmlb
0.974575346
vioscreen_f_nj_citmlb
0.859452088
vioscreen_f_nj_other
1.349999916
vioscreen_f_nj_total
2.209424497
vioscreen_f_other
1.494602653
vioscreen_f_total
2.469123234
vioscreen_fat
109.99519479999998
vioscreen_fiber
29.76227258
vioscreen_fibh2o
8.000959172
vioscreen_fibinso
21.805070100000002
vioscreen_finished
6/5/15
vioscreen_fish_servings
4.43808
vioscreen_fol_deqv
493.26571060000003
vioscreen_fol_nat
388.5947774
vioscreen_fol_syn
61.53276434
vioscreen_formontn
0.0026301370000000003
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.13516
vioscreen_frt5_day
3.3
vioscreen_frtsumm
4.9
vioscreen_fructose
27.51082245
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.264219352
vioscreen_g_total
4.775287283
vioscreen_g_whl
2.511068433
vioscreen_galactos
0.93046574
vioscreen_gammtoco
12.27610633
vioscreen_gender
false
vioscreen_genistn
0.559808141
vioscreen_glac
111.55250430000001
vioscreen_gltc
123.03646189999999
vioscreen_glucose
26.98183594
vioscreen_glutamic
15.13222121
vioscreen_glycine
2.9339733389999996
vioscreen_glycitn
0.10361644800000001
vioscreen_grams
4210.323973
vioscreen_hei2010_dairy
5.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
87.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.2
vioscreen_hei_meat_beans
9.0
vioscreen_hei_milk
5.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.6
vioscreen_hei_score
79.9
vioscreen_hei_sodium
4.6
vioscreen_hei_sol_fat_alc_add_sug
16.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
1.93934276
vioscreen_inositol
0.30789040300000003
vioscreen_iron
13.29841208
vioscreen_isoleuc
3.3610960239999996
vioscreen_isomalt
0.0
vioscreen_joules
10344.480140000001
vioscreen_juice_servings
0.5194
vioscreen_lactitol
0.0
vioscreen_lactose
13.30945259
vioscreen_legumes
0.10487671900000001
vioscreen_leucine
5.930658042999999
vioscreen_line_gi
524.0607021000001
vioscreen_low_fat_dairy_serving
0.59778
vioscreen_lutzeax
8421.739040999999
vioscreen_lycopene
7926.44863
vioscreen_lysine
5.058576025
vioscreen_m_egg
0.560191784
vioscreen_m_fish_hi
1.3215890540000002
vioscreen_m_fish_lo
1.2076439429999999
vioscreen_m_frank
0.043095889000000005
vioscreen_m_meat
0.051698632
vioscreen_m_mpf
2.66674002
vioscreen_m_nutsd
1.739260321
vioscreen_m_organ
0.0
vioscreen_m_poult
0.04279452
vioscreen_m_soy
0.157232875
vioscreen_magnes
458.7669521000001
vioscreen_maltitol
0.0
vioscreen_maltose
5.766055089
vioscreen_mangan
6.260027825
vioscreen_mannitol
0.488630112
vioscreen_methhis3
6.672054928
vioscreen_methion
1.681342305
vioscreen_mfa141
0.08057534200000001
vioscreen_mfa161
1.300054932
vioscreen_mfa181
48.03166203
vioscreen_mfa201
0.626739711
vioscreen_mfa221
0.24375344899999998
vioscreen_mfatot
50.5606967
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.98632946
vioscreen_nccglbr
181.5165026
vioscreen_nccglgr
126.9697453
vioscreen_niacin
20.93706523
vioscreen_niacineq
35.38492616
vioscreen_nitrogen
12.3983559
vioscreen_non_fried_fish_servings
4.25481
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.0842472439999997
vioscreen_oxalic
498.6782534
vioscreen_oxalicm
508.3588613
vioscreen_pantothe
5.92208369
vioscreen_pectins
5.202931025
vioscreen_pfa182
20.44013672
vioscreen_pfa183
2.352136732
vioscreen_pfa184
0.057205477000000005
vioscreen_pfa204
0.102246575
vioscreen_pfa205
0.207835639
vioscreen_pfa225
0.069315072
vioscreen_pfa226
0.398054818
vioscreen_pfatot
23.72739994
vioscreen_phenylal
3.52578125
vioscreen_phosphor
1572.654795
vioscreen_phytic
855.6823630000001
vioscreen_pinitol
0.007835617
vioscreen_potass
4216.089384000001
vioscreen_procdate
10/28/15
vioscreen_proline
4.953862104
vioscreen_protanim
42.42562072
vioscreen_protein
76.18732877
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.75320259
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
409.0
vioscreen_retinol
383.5924229
vioscreen_rgrain
2.147506756
vioscreen_ribofla
1.870575536
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.86375
vioscreen_satoco
0.0
vioscreen_selenium
118.4796875
vioscreen_serine
3.799452857
vioscreen_sfa100
0.512986316
vioscreen_sfa120
0.7718904679999999
vioscreen_sfa140
2.369177915
vioscreen_sfa160
16.23232823
vioscreen_sfa170
0.107397273
vioscreen_sfa180
5.758961632999999
vioscreen_sfa200
0.371452018
vioscreen_sfa220
0.38416438700000005
vioscreen_sfa40
0.606849315
vioscreen_sfa60
0.319808249
vioscreen_sfa80
0.251315078
vioscreen_sfatot
28.23914544
vioscreen_sodium
3671.276712
vioscreen_sorbitol
0.696328652
vioscreen_srvid
18832.0
vioscreen_starch
88.53700771
vioscreen_started
6/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
41.67457994
vioscreen_sweet_servings
0.49337
vioscreen_tagatose
5.075780581
vioscreen_tfa161t
0.060520548
vioscreen_tfa181t
1.259945135
vioscreen_tfa182t
0.382356199
vioscreen_tgrain
4.319451988
vioscreen_thiamin
1.487369736
vioscreen_threonin
2.890493231
vioscreen_time
33.0
vioscreen_totaltfa
1.724657701
vioscreen_totcla
0.081397263
vioscreen_totfolat
450.1272688
vioscreen_totsugar
116.9827483
vioscreen_tryptoph
0.867424952
vioscreen_tyrosine
2.7509593389999996
vioscreen_user_id
18832.0
vioscreen_v_drkgr
0.741835586
vioscreen_v_orange
0.391260309
vioscreen_v_other
1.312356191
vioscreen_v_potato
0.7860273809999999
vioscreen_v_starcy
0.09356164800000001
vioscreen_v_tomato
0.61868491
vioscreen_v_total
3.943643648
vioscreen_valine
4.086931788
vioscreen_veg5_day
7.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.9
vioscreen_visit
1.0
vioscreen_vita_iu
22298.22192
vioscreen_vita_rae
1434.5406679999999
vioscreen_vita_re
2485.488699
vioscreen_vitb12
5.424247177000001
vioscreen_vitb6
2.492685146
vioscreen_vitc
246.509482
vioscreen_vitd
9.729561751
vioscreen_vitd2
1.068986281
vioscreen_vitd3
8.660657909
vioscreen_vitd_iu
389.18247
vioscreen_vite_iu
26.83158712
vioscreen_vitk
400.6966182
vioscreen_water
3726.3818490000003
vioscreen_weight
Not provided
vioscreen_wgrain
2.171972823
vioscreen_whole_grain_servings
2.51107
vioscreen_xylitol
0.07356165
vioscreen_zinc
11.0519752
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
59.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)