American Gut Project; 10317.000029397
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633711
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029397
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
Yes
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000029397
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959
bmi
35.26
bmi_cat
Obese
bmi_corrected
35.26
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool) - Type 1 and 2
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-29
collection month
June
collection season
Summer
collection time
20:40
collection_timestamp
2015-06-29 20:40
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
99.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom:Unspecified
gluten
No
has_physical_specimen
true
height cm
165
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b6c5bd7f678eb8a7d3f52705701fabb1ec74150d0617306940fa9a123a46921dc0b7930290b78a95e21f15bd1bc381cbed4b4ffe4e7f1df5d76db1ff5c760845
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
54.4
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-2.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029397
sample type
Stool
seafood_frequency
Never
seasonal_allergies
No
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
No
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
True
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
ca763baff705f277
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0
vioscreen_a_cal
0
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.730384471
vioscreen_addsugar
48.02912564
vioscreen_adsugtot
38.73273759
vioscreen_age
215
vioscreen_alanine
2.833616492
vioscreen_alcohol
0.000876712
vioscreen_alcohol_servings
0
vioscreen_alphacar
1026.24726
vioscreen_alphtoce
11.47109509
vioscreen_alphtoco
10.43589068
vioscreen_arginine
3.487178269
vioscreen_ash
21.03542782
vioscreen_aspartam
0
vioscreen_aspartic
5.835013779
vioscreen_avcarb
126.0922731
vioscreen_bcodeid
Not provided
vioscreen_betacar
10079.70753
vioscreen_betacryp
187.6616866
vioscreen_betaine
135.5825021
vioscreen_betatoco
0.289506865
vioscreen_biochana
0.013260274
vioscreen_bmi
Not provided
vioscreen_caffeine
466.0262842
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.36723
vioscreen_calcium_servings
2.96381
vioscreen_calories
1361.407534
vioscreen_carbo
155.1285103
vioscreen_cholest
184.5147688
vioscreen_choline
300.2274615
vioscreen_clac9t11
0.081808221
vioscreen_clat10c12
0.014383562
vioscreen_copper
1.211561647
vioscreen_coumest
0.330520546
vioscreen_cystine
0.687287631
vioscreen_d_cheese
0.581917791
vioscreen_d_milk
0.782986325
vioscreen_d_tot_soym
1.3672329
vioscreen_d_total
1.3672329
vioscreen_d_yogurt
0
vioscreen_daidzein
0.572274028
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.68950697
vioscreen_discfat_oil
24.20433166
vioscreen_discfat_sol
26.506654
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0
vioscreen_f_citmlb
0.692137
vioscreen_f_nj_citmlb
0.685972616
vioscreen_f_nj_other
0.445287626
vioscreen_f_nj_total
1.131342472
vioscreen_f_other
0.445287626
vioscreen_f_total
1.137479432
vioscreen_fat
61.95516909
vioscreen_fiber
29.03701306
vioscreen_fibh2o
9.577205961
vioscreen_fibinso
19.62035665
vioscreen_finished
6/23/15
vioscreen_fish_servings
2.39154
vioscreen_fol_deqv
373.1338185
vioscreen_fol_nat
356.580244
vioscreen_fol_syn
9.73043865
vioscreen_formontn
0.002328767
vioscreen_fried_fish_servings
0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2
vioscreen_frtsumm
2.3
vioscreen_fructose
17.91674203
vioscreen_fruit_servings
2
vioscreen_g_nwhl
0.338876719
vioscreen_g_total
1.768219245
vioscreen_g_whl
1.429342359
vioscreen_galactos
0.442630047
vioscreen_gammtoco
9.054383829
vioscreen_gender
F
vioscreen_genistn
0.354465725
vioscreen_glac
53.91657748
vioscreen_gltc
60.42736515
vioscreen_glucose
20.95917835
vioscreen_glutamic
11.14216476
vioscreen_glycine
2.427068507
vioscreen_glycitn
0.140054792
vioscreen_grams
3770.05274
vioscreen_hei2010_dairy
7.7
vioscreen_hei2010_empty_calories
14
vioscreen_hei2010_fatty_acids
3
vioscreen_hei2010_fruit
5
vioscreen_hei2010_greens_beans
5
vioscreen_hei2010_protien_foods
5
vioscreen_hei2010_refined_grains
10
vioscreen_hei2010_score
71.7
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
0
vioscreen_hei2010_veg
5
vioscreen_hei2010_whole_fruit
5
vioscreen_hei2010_whole_grains
7
vioscreen_hei_drk_g_org_veg_leg
5
vioscreen_hei_fruit
5
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10
vioscreen_hei_milk
7.7
vioscreen_hei_non_juice_frt
5
vioscreen_hei_oils
10
vioscreen_hei_sat_fat
0.8
vioscreen_hei_score
68.7
vioscreen_hei_sodium
0
vioscreen_hei_sol_fat_alc_add_sug
14.5
vioscreen_hei_veg
5
vioscreen_hei_whl_grains
3.5
vioscreen_height
Not provided
vioscreen_histidin
1.645918002
vioscreen_inositol
0.175616434
vioscreen_iron
9.23684985
vioscreen_isoleuc
2.746410966
vioscreen_isomalt
0
vioscreen_joules
5696.12774
vioscreen_juice_servings
0.01233
vioscreen_lactitol
0
vioscreen_lactose
11.510686
vioscreen_legumes
0.089287672
vioscreen_leucine
4.604547704
vioscreen_line_gi
287.4364512
vioscreen_low_fat_dairy_serving
0.02244
vioscreen_lutzeax
13913.70411
vioscreen_lycopene
1698.61524
vioscreen_lysine
4.264903615
vioscreen_m_egg
0.311260276
vioscreen_m_fish_hi
0.344356171
vioscreen_m_fish_lo
1.018684952
vioscreen_m_frank
0.570383568
vioscreen_m_meat
0.099917812
vioscreen_m_mpf
2.962027437
vioscreen_m_nutsd
1.147150662
vioscreen_m_organ
0
vioscreen_m_poult
0.928904076
vioscreen_m_soy
0.001041096
vioscreen_magnes
345.8640839
vioscreen_maltitol
0
vioscreen_maltose
3.238301651
vioscreen_mangan
3.633507465
vioscreen_mannitol
0.168657528
vioscreen_methhis3
7.706547651
vioscreen_methion
1.3295615
vioscreen_mfa141
0.081616441
vioscreen_mfa161
0.752109559
vioscreen_mfa181
20.59709439
vioscreen_mfa201
0.227123271
vioscreen_mfa221
0.021123288
vioscreen_mfatot
21.86158765
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.43589068
vioscreen_nccglbr
103.9194777
vioscreen_nccglgr
72.68544521
vioscreen_niacin
18.32402879
vioscreen_niacineq
30.19986087
vioscreen_nitrogen
10.2455339
vioscreen_non_fried_fish_servings
2.39154
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.563342285
vioscreen_oxalic
502.572988
vioscreen_oxalicm
547.2116866
vioscreen_pantothe
6.56101509
vioscreen_pectins
4.852876177
vioscreen_pfa182
11.13443854
vioscreen_pfa183
1.414027049
vioscreen_pfa184
0.005506849
vioscreen_pfa204
0.092273973
vioscreen_pfa205
0.028547945
vioscreen_pfa225
0.017643836
vioscreen_pfa226
0.098410954
vioscreen_pfatot
12.85383535
vioscreen_phenylal
2.665835529
vioscreen_phosphor
1045.495719
vioscreen_phytic
546.7158818
vioscreen_pinitol
0.024684932
vioscreen_potass
3073.706164
vioscreen_procdate
10/28/15
vioscreen_proline
3.59720576
vioscreen_protanim
37.84841075
vioscreen_protein
63.12954837
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.28247003
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
377
vioscreen_retinol
311.5076627
vioscreen_rgrain
0.473506896
vioscreen_ribofla
2.149287644
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
1.59345
vioscreen_satoco
0
vioscreen_selenium
90.44772046
vioscreen_serine
2.845561657
vioscreen_sfa100
0.580712347
vioscreen_sfa120
0.716630157
vioscreen_sfa140
2.291506749
vioscreen_sfa160
11.33191754
vioscreen_sfa170
0.1129315
vioscreen_sfa180
4.746054286
vioscreen_sfa200
0.174739733
vioscreen_sfa220
0.222082206
vioscreen_sfa40
0.725534267
vioscreen_sfa60
0.403945212
vioscreen_sfa80
0.26972604
vioscreen_sfatot
21.91942289
vioscreen_sodium
2889.172945
vioscreen_sorbitol
0.12624657
vioscreen_srvid
19947
vioscreen_starch
31.0165213
vioscreen_started
6/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0
vioscreen_sucrlose
0
vioscreen_sucrose
25.39279484
vioscreen_sweet_servings
0.56986
vioscreen_tagatose
1.594602653
vioscreen_tfa161t
0.038164382
vioscreen_tfa181t
1.039890404
vioscreen_tfa182t
0.300301372
vioscreen_tgrain
1.701863328
vioscreen_thiamin
1.012876746
vioscreen_threonin
2.393150685
vioscreen_time
24
vioscreen_totaltfa
1.453780835
vioscreen_totcla
0.096657541
vioscreen_totfolat
366.3105736
vioscreen_totsugar
79.99063035
vioscreen_tryptoph
0.713506913
vioscreen_tyrosine
2.178821971
vioscreen_user_id
19947
vioscreen_v_drkgr
1.257671199
vioscreen_v_orange
0.171863002
vioscreen_v_other
1.600684932
vioscreen_v_potato
0.15967123
vioscreen_v_starcy
0.235534229
vioscreen_v_tomato
0.091643838
vioscreen_v_total
3.517096198
vioscreen_valine
3.137999987
vioscreen_veg5_day
7.5
vioscreen_vegetable_servings
5
vioscreen_vegsumm
7
vioscreen_visit
1
vioscreen_vita_iu
18848.86164
vioscreen_vita_rae
1202.063356
vioscreen_vita_re
2092.619692
vioscreen_vitb12
2.864767163
vioscreen_vitb6
1.697862933
vioscreen_vitc
208.1212115
vioscreen_vitd
5.868465058
vioscreen_vitd2
0.002383562
vioscreen_vitd3
5.866109268
vioscreen_vitd_iu
234.7386023
vioscreen_vite_iu
15.51077028
vioscreen_vitk
627.1802226
vioscreen_water
3482.073288
vioscreen_weight
Not provided
vioscreen_wgrain
1.228356097
vioscreen_whole_grain_servings
1.42934
vioscreen_xylitol
0.047095892
vioscreen_zinc
7.683231218
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
96
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)