American Gut Project; 10317.000012937
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632349
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000012937
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000012937
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
22.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-02-02
collection month
February
collection season
Winter
collection time
10:00
collection_timestamp
2015-02-02 10:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
11.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2ece1a86cedec8811d507855fdc1953d3d6e1dcf04e68d78d4dbb3dfe81613d6bb1ec4cd941232355c5d4430006c8f12785408a03c9eb8daf9360f182c33a7ab
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.3
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000012937
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
66b6bbbbb181a23b
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
Not sure
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.671315149
vioscreen_a_cal
211.9100813
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.9661920419999999
vioscreen_addsugar
9.759151595
vioscreen_adsugtot
9.107340941
vioscreen_age
214.0
vioscreen_alanine
2.52630147
vioscreen_alcohol
25.60871147
vioscreen_alcohol_servings
1.6713200000000001
vioscreen_alphacar
880.9721747000001
vioscreen_alphtoce
12.24827429
vioscreen_alphtoco
11.52377997
vioscreen_arginine
3.4222465619999998
vioscreen_ash
15.17109509
vioscreen_aspartam
0.0
vioscreen_aspartic
5.164191928
vioscreen_avcarb
109.8241973
vioscreen_bcodeid
Not provided
vioscreen_betacar
8854.939041
vioscreen_betacryp
47.25410424
vioscreen_betaine
85.65000535
vioscreen_betatoco
0.292219188
vioscreen_biochana
0.022054795
vioscreen_bmi
Not provided
vioscreen_caffeine
171.59041100000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.75378
vioscreen_calcium_servings
2.05452
vioscreen_calories
1675.49161
vioscreen_carbo
132.8249144
vioscreen_cholest
211.17915240000002
vioscreen_choline
287.93163530000004
vioscreen_clac9t11
0.157123263
vioscreen_clat10c12
0.033260278
vioscreen_copper
1.206191808
vioscreen_coumest
0.018876713
vioscreen_cystine
0.7156985770000001
vioscreen_d_cheese
0.249753435
vioscreen_d_milk
0.503589034
vioscreen_d_tot_soym
0.753780835
vioscreen_d_total
0.753780835
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.067808219
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.997698724
vioscreen_discfat_oil
34.92584011
vioscreen_discfat_sol
39.75295912
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000575342
vioscreen_f_citmlb
0.323232865
vioscreen_f_nj_citmlb
0.319835611
vioscreen_f_nj_other
0.356082195
vioscreen_f_nj_total
0.675917785
vioscreen_f_other
0.356082195
vioscreen_f_total
0.67931506
vioscreen_fat
88.67391909
vioscreen_fiber
23.00109429
vioscreen_fibh2o
4.739232395
vioscreen_fibinso
18.24707299
vioscreen_finished
12/23/14
vioscreen_fish_servings
1.05865
vioscreen_fol_deqv
332.0099315
vioscreen_fol_nat
314.39497
vioscreen_fol_syn
10.35408217
vioscreen_formontn
0.00279452
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.4
vioscreen_fructose
10.60233037
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.548493184
vioscreen_g_total
3.273534487
vioscreen_g_whl
1.7250683930000001
vioscreen_galactos
0.07402739900000001
vioscreen_gammtoco
5.971315149
vioscreen_gender
false
vioscreen_genistn
0.125369858
vioscreen_glac
43.03118311
vioscreen_gltc
51.07955908
vioscreen_glucose
10.88479506
vioscreen_glutamic
9.689917996
vioscreen_glycine
2.351041109
vioscreen_glycitn
0.015013698999999998
vioscreen_grams
2479.778082
vioscreen_hei2010_dairy
3.5
vioscreen_hei2010_empty_calories
14.9
vioscreen_hei2010_fatty_acids
4.8
vioscreen_hei2010_fruit
2.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.5
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.8
vioscreen_hei_sodium
2.7
vioscreen_hei_sol_fat_alc_add_sug
9.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
1.421534541
vioscreen_inositol
0.18994521
vioscreen_iron
10.47588894
vioscreen_isoleuc
2.285808239
vioscreen_isomalt
0.0
vioscreen_joules
7010.256848999999
vioscreen_juice_servings
0.00685
vioscreen_lactitol
0.0
vioscreen_lactose
6.432301477
vioscreen_legumes
0.41060272600000003
vioscreen_leucine
4.015999237
vioscreen_line_gi
261.1034033
vioscreen_low_fat_dairy_serving
0.37411
vioscreen_lutzeax
11733.5274
vioscreen_lycopene
5628.328082
vioscreen_lysine
3.429342693
vioscreen_m_egg
0.516657539
vioscreen_m_fish_hi
0.235205475
vioscreen_m_fish_lo
0.368082209
vioscreen_m_frank
0.0
vioscreen_m_meat
1.368520491
vioscreen_m_mpf
2.0622466619999997
vioscreen_m_nutsd
1.7109042230000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.090465755
vioscreen_m_soy
0.002849315
vioscreen_magnes
324.37377999999995
vioscreen_maltitol
0.0
vioscreen_maltose
1.131945048
vioscreen_mangan
5.395560988
vioscreen_mannitol
0.351589004
vioscreen_methhis3
8.080357047
vioscreen_methion
1.06383575
vioscreen_mfa141
0.057917817
vioscreen_mfa161
1.249507037
vioscreen_mfa181
38.29731646
vioscreen_mfa201
0.40315071
vioscreen_mfa221
0.048109587999999995
vioscreen_mfatot
40.20637843
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.52377997
vioscreen_nccglbr
75.19606164
vioscreen_nccglgr
52.600240799999995
vioscreen_niacin
12.18548133
vioscreen_niacineq
21.991865100000002
vioscreen_nitrogen
8.902656785
vioscreen_non_fried_fish_servings
1.05865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.223589001
vioscreen_oxalic
307.4960188
vioscreen_oxalicm
321.330244
vioscreen_pantothe
3.19693152
vioscreen_pectins
3.9885207080000002
vioscreen_pfa182
12.03109616
vioscreen_pfa183
1.098082075
vioscreen_pfa184
0.007863014
vioscreen_pfa204
0.06139726
vioscreen_pfa205
0.032849317
vioscreen_pfa225
0.013205479
vioscreen_pfa226
0.07183562
vioscreen_pfatot
13.35202804
vioscreen_phenylal
2.384931172
vioscreen_phosphor
1007.548716
vioscreen_phytic
748.5527397000001
vioscreen_pinitol
0.001534247
vioscreen_potass
2678.0395550000003
vioscreen_procdate
10/28/15
vioscreen_proline
2.948959225
vioscreen_protanim
26.44950503
vioscreen_protein
54.26185788
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.81289865
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
670.0
vioscreen_retinol
296.9682577
vioscreen_rgrain
0.660082214
vioscreen_ribofla
1.159123251
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.81715
vioscreen_satoco
0.0
vioscreen_selenium
75.40177119
vioscreen_serine
2.600767371
vioscreen_sfa100
0.722493044
vioscreen_sfa120
0.8119177409999999
vioscreen_sfa140
2.6212330440000002
vioscreen_sfa160
15.94616198
vioscreen_sfa170
0.16794519300000002
vioscreen_sfa180
6.406000507999999
vioscreen_sfa200
0.267041099
vioscreen_sfa220
0.30638356699999997
vioscreen_sfa40
0.88895874
vioscreen_sfa60
0.5433424020000001
vioscreen_sfa80
0.345917835
vioscreen_sfatot
29.34824754
vioscreen_sodium
2842.331507
vioscreen_sorbitol
0.51199993
vioscreen_srvid
16581.0
vioscreen_starch
50.15679581
vioscreen_started
12/23/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.50279457
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
0.16194520699999998
vioscreen_tfa161t
0.026520548999999997
vioscreen_tfa181t
1.39676706
vioscreen_tfa182t
0.213342452
vioscreen_tgrain
3.284629508
vioscreen_thiamin
0.7988492779999999
vioscreen_threonin
1.9684112130000002
vioscreen_time
31.0
vioscreen_totaltfa
1.674657534
vioscreen_totcla
0.190739692
vioscreen_totfolat
324.7489512
vioscreen_totsugar
39.97255191
vioscreen_tryptoph
0.588931525
vioscreen_tyrosine
1.79816443
vioscreen_user_id
16581.0
vioscreen_v_drkgr
0.951041109
vioscreen_v_orange
0.182109592
vioscreen_v_other
0.996547918
vioscreen_v_potato
0.039917807
vioscreen_v_starcy
0.025698627999999998
vioscreen_v_tomato
0.319780825
vioscreen_v_total
2.51536999
vioscreen_valine
2.6323835819999997
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.9
vioscreen_visit
1.0
vioscreen_vita_iu
16521.04932
vioscreen_vita_rae
1073.5581339999999
vioscreen_vita_re
1850.145719
vioscreen_vitb12
2.219068553
vioscreen_vitb6
1.39676706
vioscreen_vitc
80.71715004
vioscreen_vitd
4.209945888
vioscreen_vitd2
0.0004931509999999999
vioscreen_vitd3
4.2094800139999995
vioscreen_vitd_iu
168.39783549999999
vioscreen_vite_iu
17.19093001
vioscreen_vitk
595.2399401
vioscreen_water
2169.146404
vioscreen_weight
Not provided
vioscreen_wgrain
2.624548005
vioscreen_whole_grain_servings
1.72507
vioscreen_xylitol
0.055369870999999994
vioscreen_zinc
8.877533043
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily