American Gut Project; 10317.000033804
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634380
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:35Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033804
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
20s
age years
21.0
age_corrected
21.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033804
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1994.0
bmi
20.02
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-21
collection month
September
collection season
Fall
collection time
16:40
collection_timestamp
2015-09-21 16:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
18.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
433c630a6d084868fc2dc74de6f7fca987142e031bc69a2eb8317c681121794f67e7905ce0402e12f6df476a57764df71a99c76528d9213a8c9de73a7b024a28
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
1 year
latitude
40.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000033804
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
38500bd0d9fce08a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.313534253
vioscreen_a_cal
32.01599957
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.644164705
vioscreen_addsugar
16.80915026
vioscreen_adsugtot
16.23561644
vioscreen_age
215.0
vioscreen_alanine
4.234630512
vioscreen_alcohol
4.4589315339999995
vioscreen_alcohol_servings
0.31353000000000003
vioscreen_alphacar
2677.723459
vioscreen_alphtoce
14.43553617
vioscreen_alphtoco
13.53446463
vioscreen_arginine
4.916794534
vioscreen_ash
18.58493285
vioscreen_aspartam
0.0
vioscreen_aspartic
8.129260756
vioscreen_avcarb
83.88580908
vioscreen_bcodeid
Not provided
vioscreen_betacar
7318.738356
vioscreen_betacryp
117.2703553
vioscreen_betaine
18.40065684
vioscreen_betatoco
0.308465764
vioscreen_biochana
0.003917808
vioscreen_bmi
Not provided
vioscreen_caffeine
94.72000214
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9020799999999999
vioscreen_calcium_servings
2.0476400000000003
vioscreen_calories
1520.972089
vioscreen_carbo
108.0918557
vioscreen_cholest
447.1193921
vioscreen_choline
504.9498288
vioscreen_clac9t11
0.044465752000000004
vioscreen_clat10c12
0.00958904
vioscreen_copper
1.1557807820000001
vioscreen_coumest
0.07131507
vioscreen_cystine
0.994822045
vioscreen_d_cheese
0.46906847
vioscreen_d_milk
0.059041094
vioscreen_d_tot_soym
0.9020822190000001
vioscreen_d_total
0.9020822190000001
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.097369866
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.320438333
vioscreen_discfat_oil
34.57254923
vioscreen_discfat_sol
19.20098593
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000328767
vioscreen_f_citmlb
0.606137001
vioscreen_f_nj_citmlb
0.47657533399999996
vioscreen_f_nj_other
1.577123355
vioscreen_f_nj_total
2.05369873
vioscreen_f_other
1.577123355
vioscreen_f_total
2.183260481
vioscreen_fat
87.64914919
vioscreen_fiber
24.20646939
vioscreen_fibh2o
7.211836472999999
vioscreen_fibinso
17.081561699999998
vioscreen_finished
9/20/15
vioscreen_fish_servings
5.21769
vioscreen_fol_deqv
351.1723459
vioscreen_fol_nat
347.0455265
vioscreen_fol_syn
2.42616435
vioscreen_formontn
0.0014246570000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.1
vioscreen_frtsumm
4.4
vioscreen_fructose
16.81717814
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.08046575
vioscreen_g_total
0.08046575
vioscreen_g_whl
0.0
vioscreen_galactos
0.5917533979999999
vioscreen_gammtoco
7.641862425
vioscreen_gender
false
vioscreen_genistn
0.05249315
vioscreen_glac
28.39235338
vioscreen_gltc
33.60950878
vioscreen_glucose
17.7501097
vioscreen_glutamic
13.57208235
vioscreen_glycine
3.538466195
vioscreen_glycitn
0.0000822
vioscreen_grams
2402.129795
vioscreen_hei2010_dairy
4.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.1
vioscreen_hei_score
70.4
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.278986515
vioscreen_inositol
0.125041094
vioscreen_iron
8.30520655
vioscreen_isoleuc
3.798876284
vioscreen_isomalt
0.0
vioscreen_joules
6363.7445210000005
vioscreen_juice_servings
0.25915
vioscreen_lactitol
0.0
vioscreen_lactose
6.475205346
vioscreen_legumes
0.096136987
vioscreen_leucine
6.338548132000001
vioscreen_line_gi
210.28270550000002
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
3923.8910960000003
vioscreen_lycopene
3586.652397
vioscreen_lysine
6.262548159
vioscreen_m_egg
1.579643856
vioscreen_m_fish_hi
2.348986315
vioscreen_m_fish_lo
0.624520581
vioscreen_m_frank
0.0
vioscreen_m_meat
0.730383552
vioscreen_m_mpf
5.561561564
vioscreen_m_nutsd
1.7053424990000001
vioscreen_m_organ
0.0
vioscreen_m_poult
1.8578081519999998
vioscreen_m_soy
0.0000822
vioscreen_magnes
282.85237589999997
vioscreen_maltitol
0.0
vioscreen_maltose
0.30789040300000003
vioscreen_mangan
2.103835851
vioscreen_mannitol
0.332109571
vioscreen_methhis3
19.11904029
vioscreen_methion
2.049780775
vioscreen_mfa141
0.076931501
vioscreen_mfa161
1.9297532169999998
vioscreen_mfa181
39.84208316
vioscreen_mfa201
0.649452021
vioscreen_mfa221
0.426575334
vioscreen_mfatot
43.11721158
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.53446463
vioscreen_nccglbr
56.19799872
vioscreen_nccglgr
39.30654966
vioscreen_niacin
22.29695928
vioscreen_niacineq
36.83419574
vioscreen_nitrogen
13.12597121
vioscreen_non_fried_fish_servings
5.21769
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.403643882
vioscreen_oxalic
122.23553079999999
vioscreen_oxalicm
148.51997
vioscreen_pantothe
6.865616305
vioscreen_pectins
5.807288099
vioscreen_pfa182
13.22989084
vioscreen_pfa183
1.2052601440000001
vioscreen_pfa184
0.096465751
vioscreen_pfa204
0.27068491899999997
vioscreen_pfa205
0.302986312
vioscreen_pfa225
0.129260264
vioscreen_pfa226
0.6706301339999999
vioscreen_pfatot
16.02808219
vioscreen_phenylal
3.5245481730000003
vioscreen_phosphor
1172.7045380000002
vioscreen_phytic
412.82821060000003
vioscreen_pinitol
0.0
vioscreen_potass
3274.487671
vioscreen_procdate
10/28/15
vioscreen_proline
4.025123074
vioscreen_protanim
63.42554045
vioscreen_protein
81.26312072
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.83167139
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
58.0
vioscreen_retinol
278.5621789
vioscreen_rgrain
0.055342468
vioscreen_ribofla
1.6456163380000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.78225
vioscreen_satoco
0.0
vioscreen_selenium
108.7642337
vioscreen_serine
3.938493619
vioscreen_sfa100
0.232547938
vioscreen_sfa120
0.293452056
vioscreen_sfa140
1.3798083159999999
vioscreen_sfa160
13.45136986
vioscreen_sfa170
0.09210959699999999
vioscreen_sfa180
4.0469040960000005
vioscreen_sfa200
0.240684948
vioscreen_sfa220
0.3191507
vioscreen_sfa40
0.27115068800000003
vioscreen_sfa60
0.146767112
vioscreen_sfa80
0.10199999900000001
vioscreen_sfatot
20.96876605
vioscreen_sodium
2760.841438
vioscreen_sorbitol
0.261369888
vioscreen_srvid
20806.0
vioscreen_starch
11.25731485
vioscreen_started
9/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.67797383
vioscreen_sweet_servings
0.0
vioscreen_tagatose
2.701150805
vioscreen_tfa161t
0.048136985
vioscreen_tfa181t
0.902876679
vioscreen_tfa182t
0.176383575
vioscreen_tgrain
0.055342468
vioscreen_thiamin
0.728246485
vioscreen_threonin
3.2943011560000004
vioscreen_time
10.0
vioscreen_totaltfa
1.130548012
vioscreen_totcla
0.055068494
vioscreen_totfolat
349.471661
vioscreen_totsugar
62.61522902
vioscreen_tryptoph
0.874356205
vioscreen_tyrosine
2.8665480519999997
vioscreen_user_id
20806.0
vioscreen_v_drkgr
0.50506851
vioscreen_v_orange
0.503260281
vioscreen_v_other
1.118520575
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.674958906
vioscreen_v_total
2.8018357369999998
vioscreen_valine
4.286054888
vioscreen_veg5_day
7.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
15455.2
vioscreen_vita_rae
1004.916524
vioscreen_vita_re
1731.269007
vioscreen_vitb12
5.506575409
vioscreen_vitb6
2.2475065880000002
vioscreen_vitc
148.24463830000002
vioscreen_vitd
13.33043932
vioscreen_vitd2
0.001589041
vioscreen_vitd3
13.32885006
vioscreen_vitd_iu
533.2175728
vioscreen_vite_iu
20.18972469
vioscreen_vitk
170.3099315
vioscreen_water
2116.429966
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.044904112999999996
vioscreen_zinc
9.172794039
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
51.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never