American Gut Project; 10317.000031257
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634272
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031257
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031257
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
20.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/05/2015
collection month
August
collection season
Summer
collection time
09:15
collection_timestamp
2015-08-05 09:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southwest
elevation
208.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
0a0db1e512139ac0a00c48904aa3b11fed8eac7e2134aea7f548bd31968ff9d7b94ca43c75cee553cfef0d1f0ecae0f0b9d0eb19ff1568230ad5d05501476340
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
30.2
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-97.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031257
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
53dd56ad01365d2a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.312493144
vioscreen_a_cal
149.294467
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.21838312
vioscreen_addsugar
20.05833021
vioscreen_adsugtot
18.98531411
vioscreen_age
215.0
vioscreen_alanine
5.083726188
vioscreen_alcohol
19.35632759
vioscreen_alcohol_servings
1.31249
vioscreen_alphacar
3730.8825340000003
vioscreen_alphtoce
18.68690336
vioscreen_alphtoco
17.22221747
vioscreen_arginine
5.496026862000001
vioscreen_ash
26.11682096
vioscreen_aspartam
0.0
vioscreen_aspartic
9.107560333
vioscreen_avcarb
105.5315711
vioscreen_bcodeid
Not provided
vioscreen_betacar
18203.93288
vioscreen_betacryp
194.56787240000003
vioscreen_betaine
53.73942102
vioscreen_betatoco
0.301506858
vioscreen_biochana
0.0055890409999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
266.25590750000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.39348
vioscreen_calcium_servings
2.13047
vioscreen_calories
2269.522774
vioscreen_carbo
138.3571918
vioscreen_cholest
697.7433647
vioscreen_choline
699.6472603
vioscreen_clac9t11
0.19391782600000002
vioscreen_clat10c12
0.039835627
vioscreen_copper
1.435534501
vioscreen_coumest
0.18016438899999998
vioscreen_cystine
1.2618905679999999
vioscreen_d_cheese
0.12345204800000001
vioscreen_d_milk
0.19290412
vioscreen_d_tot_soym
0.39347948
vioscreen_d_total
0.39347948
vioscreen_d_yogurt
0.076684931
vioscreen_daidzein
0.250465748
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.895287751
vioscreen_discfat_oil
47.43223994
vioscreen_discfat_sol
56.29041096
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002136986
vioscreen_f_citmlb
1.354958897
vioscreen_f_nj_citmlb
1.32879438
vioscreen_f_nj_other
1.44920554
vioscreen_f_nj_total
2.778027344
vioscreen_f_other
1.44920554
vioscreen_f_total
2.804191861
vioscreen_fat
142.5996147
vioscreen_fiber
32.82629495
vioscreen_fibh2o
10.36901421
vioscreen_fibinso
22.55641053
vioscreen_finished
7/30/15
vioscreen_fish_servings
4.63865
vioscreen_fol_deqv
488.7276113
vioscreen_fol_nat
457.4962757
vioscreen_fol_syn
18.35312366
vioscreen_formontn
0.000465753
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.6
vioscreen_fructose
21.47575316
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.746739803
vioscreen_g_total
0.768493234
vioscreen_g_whl
0.021753425
vioscreen_galactos
0.305753441
vioscreen_gammtoco
13.15868606
vioscreen_gender
false
vioscreen_genistn
0.114876713
vioscreen_glac
33.47610766
vioscreen_gltc
38.88221586
vioscreen_glucose
20.78613549
vioscreen_glutamic
14.52876579
vioscreen_glycine
4.338520374
vioscreen_glycitn
0.011095891
vioscreen_grams
4643.221918
vioscreen_hei2010_dairy
1.3
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.2
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
12.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.513698797
vioscreen_inositol
0.227506873
vioscreen_iron
11.92852231
vioscreen_isoleuc
4.268493485
vioscreen_isomalt
0.0
vioscreen_joules
9495.680822
vioscreen_juice_servings
0.0523
vioscreen_lactitol
0.0
vioscreen_lactose
3.49123301
vioscreen_legumes
0.030356163999999998
vioscreen_leucine
6.960411762000001
vioscreen_line_gi
270.0923587
vioscreen_low_fat_dairy_serving
0.07668
vioscreen_lutzeax
10927.76781
vioscreen_lycopene
9126.336301000001
vioscreen_lysine
7.022081015
vioscreen_m_egg
2.400876732
vioscreen_m_fish_hi
1.9823561580000002
vioscreen_m_fish_lo
0.661150705
vioscreen_m_frank
0.09350684199999999
vioscreen_m_meat
2.130931614
vioscreen_m_mpf
6.852027371
vioscreen_m_nutsd
0.18758904399999998
vioscreen_m_organ
0.0
vioscreen_m_poult
1.984164471
vioscreen_m_soy
0.000520548
vioscreen_magnes
326.4522046
vioscreen_maltitol
0.0
vioscreen_maltose
1.5555891480000001
vioscreen_mangan
3.20569851
vioscreen_mannitol
0.628931417
vioscreen_methhis3
24.95301263
vioscreen_methion
2.302931192
vioscreen_mfa141
0.10383561
vioscreen_mfa161
3.089808299
vioscreen_mfa181
59.5885488
vioscreen_mfa201
0.709588957
vioscreen_mfa221
0.377451983
vioscreen_mfatot
64.18638164
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.22221747
vioscreen_nccglbr
76.49514662
vioscreen_nccglgr
53.5145762
vioscreen_niacin
24.72936644
vioscreen_niacineq
40.5623796
vioscreen_nitrogen
14.68786253
vioscreen_non_fried_fish_servings
4.63865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.366219633
vioscreen_oxalic
290.9080693
vioscreen_oxalicm
289.1116652
vioscreen_pantothe
8.959480682999999
vioscreen_pectins
7.5230127620000005
vioscreen_pfa182
20.07665748
vioscreen_pfa183
2.2958905780000003
vioscreen_pfa184
0.08167123700000001
vioscreen_pfa204
0.34361643299999994
vioscreen_pfa205
0.271287662
vioscreen_pfa225
0.117890429
vioscreen_pfa226
0.6007945020000001
vioscreen_pfatot
23.92194991
vioscreen_phenylal
3.852027705
vioscreen_phosphor
1225.611558
vioscreen_phytic
412.46386989999996
vioscreen_pinitol
0.000465753
vioscreen_potass
4177.985616
vioscreen_procdate
10/28/15
vioscreen_proline
4.173671607
vioscreen_protanim
73.35158390000001
vioscreen_protein
91.55178724
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.20043878
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
247.0
vioscreen_retinol
490.7075342
vioscreen_rgrain
0.729835573
vioscreen_ribofla
2.312137301
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.60296
vioscreen_satoco
0.0
vioscreen_selenium
117.1948844
vioscreen_serine
4.250300661
vioscreen_sfa100
0.797479332
vioscreen_sfa120
0.872383515
vioscreen_sfa140
3.13950697
vioscreen_sfa160
25.12131314
vioscreen_sfa170
0.308109566
vioscreen_sfa180
9.547998047
vioscreen_sfa200
0.253424637
vioscreen_sfa220
0.139945221
vioscreen_sfa40
0.987589044
vioscreen_sfa60
0.606054771
vioscreen_sfa80
0.376274004
vioscreen_sfatot
42.42351777
vioscreen_sodium
4212.934589
vioscreen_sorbitol
0.478383522
vioscreen_srvid
20273.0
vioscreen_starch
19.8049604
vioscreen_started
7/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.00334172
vioscreen_sweet_servings
0.12775999999999998
vioscreen_tagatose
1.016082178
vioscreen_tfa161t
0.049178079000000006
vioscreen_tfa181t
2.352904437
vioscreen_tfa182t
0.370383485
vioscreen_tgrain
0.812383615
vioscreen_thiamin
1.021726007
vioscreen_threonin
3.8665199589999997
vioscreen_time
23.0
vioscreen_totaltfa
2.785095549
vioscreen_totcla
0.23490410399999997
vioscreen_totfolat
475.8493579
vioscreen_totsugar
67.96194884
vioscreen_tryptoph
0.951917758
vioscreen_tyrosine
3.0816443039999997
vioscreen_user_id
20273.0
vioscreen_v_drkgr
0.9867670759999999
vioscreen_v_orange
0.9305753520000001
vioscreen_v_other
2.035397046
vioscreen_v_potato
0.036876712
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.6090410620000001
vioscreen_v_total
4.599150859
vioscreen_valine
4.697068306
vioscreen_veg5_day
10.9
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
35246.8274
vioscreen_vita_rae
2171.267123
vioscreen_vita_re
3851.819521
vioscreen_vitb12
6.422192717000001
vioscreen_vitb6
2.71769869
vioscreen_vitc
244.5484375
vioscreen_vitd
12.92882197
vioscreen_vitd2
0.00139726
vioscreen_vitd3
12.92742535
vioscreen_vitd_iu
517.1528789
vioscreen_vite_iu
25.67602472
vioscreen_vitk
538.4472602999999
vioscreen_water
4247.157534
vioscreen_weight
Not provided
vioscreen_wgrain
0.082547948
vioscreen_whole_grain_servings
0.02175
vioscreen_xylitol
0.078410961
vioscreen_zinc
11.48507063
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)