American Gut Project; 10317.000029345
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634018
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029345
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
69.0
age_corrected
69.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29345
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1946.0
bmi
45.83
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-07-21
collection month
July
collection season
Summer
collection time
11:55
collection_timestamp
2015-07-21 11:55
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
121.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Not provided
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
69f64efafc5ba9bd9bb8ee1ddda06587ab259c558f306b594a49f1cfb2a097f2b2d858158cf6b4b9b41fa543e10ae8152a2a7400df94191292e596cb89ab6da8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.7
level_of_education
Did not complete high school
liver_disease
I do not have this condition
livingwith
No
longitude
-2.9
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
Not provided
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029345
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
Less than 5 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Daily
survey_id
ebc9b83ccd40f91b
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.953452082
vioscreen_a_cal
96.08547731
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
24.22635649
vioscreen_addsugar
121.17849960000001
vioscreen_adsugtot
105.11361299999999
vioscreen_age
215.0
vioscreen_alanine
7.540109295
vioscreen_alcohol
13.59389046
vioscreen_alcohol_servings
0.95345
vioscreen_alphacar
1999.9537670000002
vioscreen_alphtoce
12.19679607
vioscreen_alphtoco
10.20621789
vioscreen_arginine
7.690137387999999
vioscreen_ash
41.48870933
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
15.26929045
vioscreen_avcarb
429.5455051
vioscreen_bcodeid
Not provided
vioscreen_betacar
7492.358219
vioscreen_betacryp
54.95526006
vioscreen_betaine
207.6644906
vioscreen_betatoco
0.336684972
vioscreen_biochana
0.020328769
vioscreen_bmi
Not provided
vioscreen_caffeine
749.3120719
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
8.88353
vioscreen_calcium_servings
11.099969999999999
vioscreen_calories
3945.3044520000003
vioscreen_carbo
458.14242289999993
vioscreen_cholest
662.1837757000001
vioscreen_choline
887.1244007000001
vioscreen_clac9t11
0.405506834
vioscreen_clat10c12
0.067561643
vioscreen_copper
2.543945814
vioscreen_coumest
0.26827396800000003
vioscreen_cystine
1.755945326
vioscreen_d_cheese
1.079315102
vioscreen_d_milk
7.194000161
vioscreen_d_tot_soym
8.88353422
vioscreen_d_total
8.88353422
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.37142463600000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.1214519339999995
vioscreen_discfat_oil
22.90210831
vioscreen_discfat_sol
108.46504709999999
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002054794
vioscreen_f_citmlb
0.43367121399999997
vioscreen_f_nj_citmlb
0.425890403
vioscreen_f_nj_other
0.7956438459999999
vioscreen_f_nj_total
1.221589054
vioscreen_f_other
1.7986027130000002
vioscreen_f_total
2.232328566
vioscreen_fat
155.8309075
vioscreen_fiber
28.57468964
vioscreen_fibh2o
8.050137788999999
vioscreen_fibinso
20.54200155
vioscreen_finished
7/21/15
vioscreen_fish_servings
4.40519
vioscreen_fol_deqv
699.8121575
vioscreen_fol_nat
416.9269692
vioscreen_fol_syn
166.2995291
vioscreen_formontn
0.001205479
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.24475
vioscreen_frt5_day
3.3
vioscreen_frtsumm
4.5
vioscreen_fructose
41.62605415
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.996767645
vioscreen_g_total
6.563398304
vioscreen_g_whl
1.566602733
vioscreen_galactos
1.205588897
vioscreen_gammtoco
18.11657213
vioscreen_gender
false
vioscreen_genistn
0.333753382
vioscreen_glac
193.2629709
vioscreen_gltc
206.807256
vioscreen_glucose
40.27279538
vioscreen_glutamic
33.59457406
vioscreen_glycine
5.827041417
vioscreen_glycitn
0.052246575
vioscreen_grams
6333.316438
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
9.6
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
3.5
vioscreen_hei2010_greens_beans
1.3
vioscreen_hei2010_protien_foods
4.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
58.0
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
4.1
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
3.9
vioscreen_hei2010_whole_grains
2.6
vioscreen_hei_drk_g_org_veg_leg
1.9
vioscreen_hei_fruit
3.5
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
8.4
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.9
vioscreen_hei_oils
4.8
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.3
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
8.3
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
1.3
vioscreen_height
Not provided
vioscreen_histidin
4.816055089
vioscreen_inositol
0.245041103
vioscreen_iron
19.89942075
vioscreen_isoleuc
8.104767765
vioscreen_isomalt
0.0
vioscreen_joules
16507.15753
vioscreen_juice_servings
2.02145
vioscreen_lactitol
0.0
vioscreen_lactose
102.5452911
vioscreen_legumes
0.10317808199999999
vioscreen_leucine
14.20498582
vioscreen_line_gi
944.0243151000001
vioscreen_low_fat_dairy_serving
7.071039999999999
vioscreen_lutzeax
3403.493493
vioscreen_lycopene
9375.574658
vioscreen_lysine
12.84262896
vioscreen_m_egg
1.154520531
vioscreen_m_fish_hi
1.4344932240000001
vioscreen_m_fish_lo
1.076027397
vioscreen_m_frank
0.334493162
vioscreen_m_meat
2.8569590110000003
vioscreen_m_mpf
6.737150177
vioscreen_m_nutsd
0.016657533999999998
vioscreen_m_organ
0.135369863
vioscreen_m_poult
0.899890471
vioscreen_m_soy
0.00690411
vioscreen_magnes
805.8809932
vioscreen_maltitol
0.0
vioscreen_maltose
5.183424523999999
vioscreen_mangan
6.6207399129999995
vioscreen_mannitol
0.44068499
vioscreen_methhis3
25.15942316
vioscreen_methion
4.155616238
vioscreen_mfa141
0.297726022
vioscreen_mfa161
2.752081884
vioscreen_mfa181
45.74482556
vioscreen_mfa201
0.539424656
vioscreen_mfa221
0.256438352
vioscreen_mfatot
49.97337329
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.20621789
vioscreen_nccglbr
331.0163955
vioscreen_nccglgr
231.53839900000003
vioscreen_niacin
43.27049176
vioscreen_niacineq
75.72687286
vioscreen_nitrogen
27.44180758
vioscreen_non_fried_fish_servings
3.61115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.133342921
vioscreen_oxalic
288.88120719999995
vioscreen_oxalicm
269.5267123
vioscreen_pantothe
12.9846586
vioscreen_pectins
4.12419166
vioscreen_pfa182
19.13992
vioscreen_pfa183
2.359123167
vioscreen_pfa184
0.058356168
vioscreen_pfa204
0.24320547
vioscreen_pfa205
0.20276719199999998
vioscreen_pfa225
0.082712325
vioscreen_pfa226
0.432027404
vioscreen_pfatot
22.74035477
vioscreen_phenylal
7.843643648
vioscreen_phosphor
3461.4424659999995
vioscreen_phytic
785.222089
vioscreen_pinitol
0.020410958
vioscreen_potass
7618.8226030000005
vioscreen_procdate
10/28/15
vioscreen_proline
12.57939587
vioscreen_protanim
139.33489939999998
vioscreen_protein
171.1998609
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.85657641
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
272.0
vioscreen_retinol
1871.6241440000001
vioscreen_rgrain
4.985726134
vioscreen_ribofla
6.126383241
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.50929
vioscreen_satoco
0.0
vioscreen_selenium
225.4431935
vioscreen_serine
8.595561323
vioscreen_sfa100
2.238931567
vioscreen_sfa120
4.314602954
vioscreen_sfa140
8.320547945
vioscreen_sfa160
33.44378211
vioscreen_sfa170
0.418958899
vioscreen_sfa180
15.18876686
vioscreen_sfa200
0.22041095100000002
vioscreen_sfa220
0.08827397599999999
vioscreen_sfa40
2.290328352
vioscreen_sfa60
1.4067944669999999
vioscreen_sfa80
1.2275888940000002
vioscreen_sfatot
70.06031678
vioscreen_sodium
6442.617123
vioscreen_sorbitol
1.8345203140000002
vioscreen_srvid
20201.0
vioscreen_starch
114.99440279999999
vioscreen_started
7/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
92.39185574
vioscreen_sweet_servings
1.92877
vioscreen_tagatose
6.720192102
vioscreen_tfa161t
0.12383560800000001
vioscreen_tfa181t
4.610273638
vioscreen_tfa182t
0.7072603409999999
vioscreen_tgrain
6.438904645
vioscreen_thiamin
2.339917996
vioscreen_threonin
6.929232663
vioscreen_time
30.0
vioscreen_totaltfa
5.546027531
vioscreen_totcla
0.473534278
vioscreen_totfolat
583.2255565
vioscreen_totsugar
284.8194777
vioscreen_tryptoph
1.947533845
vioscreen_tyrosine
6.736712061
vioscreen_user_id
20201.0
vioscreen_v_drkgr
0.20736987
vioscreen_v_orange
0.402027371
vioscreen_v_other
0.908246518
vioscreen_v_potato
0.947178086
vioscreen_v_starcy
0.269643831
vioscreen_v_tomato
0.834082282
vioscreen_v_total
3.5685750880000002
vioscreen_valine
9.680382465
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.1
vioscreen_visit
1.0
vioscreen_vita_iu
20430.51644
vioscreen_vita_rae
2581.6089039999997
vioscreen_vita_re
3291.59589
vioscreen_vitb12
17.03796955
vioscreen_vitb6
3.138520708
vioscreen_vitc
107.3155287
vioscreen_vitd
30.82668825
vioscreen_vitd2
0.003561644
vioscreen_vitd3
30.82320741
vioscreen_vitd_iu
1233.06753
vioscreen_vite_iu
15.13441647
vioscreen_vitk
172.7960616
vioscreen_water
5545.366096
vioscreen_weight
Not provided
vioscreen_wgrain
1.4531780090000002
vioscreen_whole_grain_servings
1.5666
vioscreen_xylitol
0.039369865
vioscreen_zinc
23.84399615
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
121.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)