American Gut Project; 10317.000030953
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634216
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030953
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
29.0
age_corrected
29.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030953
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1986.0
bmi
25.09
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/05/2015
collection month
August
collection season
Summer
collection time
10:50
collection_timestamp
2015-08-05 10:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
Canada
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not provided
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Canada
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
b19b1573c14e237532b41248d119f1e58d6cd4a4e02839be7e197ece9a7cac81f5e09cb120349943e03a691136e8bcbee7064360dc1c38cc10b0ae0c264a09f1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
Not provided
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000030953
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a4c70b1476c58575
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.170191788
vioscreen_a_cal
19.32230041
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.068685119
vioscreen_addsugar
40.40210831
vioscreen_adsugtot
29.38638164
vioscreen_age
215.0
vioscreen_alanine
6.437425086
vioscreen_alcohol
2.53104131
vioscreen_alcohol_servings
0.17019
vioscreen_alphacar
463.72281680000003
vioscreen_alphtoce
13.06057631
vioscreen_alphtoco
10.99550581
vioscreen_arginine
6.859862612000001
vioscreen_ash
21.31416417
vioscreen_aspartam
0.0
vioscreen_aspartic
10.99501418
vioscreen_avcarb
146.8862479
vioscreen_bcodeid
Not provided
vioscreen_betacar
3131.014384
vioscreen_betacryp
64.93144799
vioscreen_betaine
66.03488335
vioscreen_betatoco
0.415945226
vioscreen_biochana
0.00490411
vioscreen_bmi
Not provided
vioscreen_caffeine
56.50600385
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.3983
vioscreen_calcium_servings
2.7088799999999997
vioscreen_calories
1936.5214039999998
vioscreen_carbo
160.156143
vioscreen_cholest
497.0714041
vioscreen_choline
561.7127997
vioscreen_clac9t11
0.108027377
vioscreen_clat10c12
0.02372603
vioscreen_copper
1.319561768
vioscreen_coumest
0.031369865
vioscreen_cystine
1.436931621
vioscreen_d_cheese
0.5700821970000001
vioscreen_d_milk
0.769123318
vioscreen_d_tot_soym
1.3983013830000002
vioscreen_d_total
1.3983013830000002
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
1.170274123
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.9320001469999997
vioscreen_discfat_oil
32.52172785
vioscreen_discfat_sol
40.50813891
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000657534
vioscreen_f_citmlb
0.08391781599999999
vioscreen_f_nj_citmlb
0.062219175999999994
vioscreen_f_nj_other
0.27142467800000003
vioscreen_f_nj_total
0.333671256
vioscreen_f_other
0.321013715
vioscreen_f_total
0.404958981
vioscreen_fat
91.51206122
vioscreen_fiber
13.26939614
vioscreen_fibh2o
3.42476723
vioscreen_fibinso
9.802519665
vioscreen_finished
7/17/15
vioscreen_fish_servings
10.29635
vioscreen_fol_deqv
249.63341180000003
vioscreen_fol_nat
162.55742719999998
vioscreen_fol_syn
51.21619221
vioscreen_formontn
0.00030137
vioscreen_fried_fish_servings
2.77923
vioscreen_fried_food_servings
0.54977
vioscreen_frt5_day
0.6
vioscreen_frtsumm
0.8
vioscreen_fructose
8.147424818
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
4.905671755
vioscreen_g_total
5.284603422
vioscreen_g_whl
0.37893150000000003
vioscreen_galactos
0.171315065
vioscreen_gammtoco
18.60081871
vioscreen_gender
false
vioscreen_genistn
1.4649313730000002
vioscreen_glac
70.60438249
vioscreen_gltc
76.47172517
vioscreen_glucose
11.67093188
vioscreen_glutamic
19.42608225
vioscreen_glycine
5.343068747
vioscreen_glycitn
0.22684932300000002
vioscreen_grams
2853.80411
vioscreen_hei2010_dairy
5.6
vioscreen_hei2010_empty_calories
15.6
vioscreen_hei2010_fatty_acids
7.9
vioscreen_hei2010_fruit
1.3
vioscreen_hei2010_greens_beans
4.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
58.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
3.4
vioscreen_hei2010_whole_fruit
2.2
vioscreen_hei2010_whole_grains
1.3
vioscreen_hei_drk_g_org_veg_leg
2.7
vioscreen_hei_fruit
1.3
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.6
vioscreen_hei_non_juice_frt
2.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.8
vioscreen_hei_score
60.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.5
vioscreen_hei_veg
3.4
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
3.3685486680000003
vioscreen_inositol
0.038109594
vioscreen_iron
9.93611074
vioscreen_isoleuc
5.492410571000001
vioscreen_isomalt
0.0
vioscreen_joules
8102.4013700000005
vioscreen_juice_servings
0.14265999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
12.3945754
vioscreen_legumes
0.09101370199999999
vioscreen_leucine
9.599013403999999
vioscreen_line_gi
424.95132710000007
vioscreen_low_fat_dairy_serving
0.54162
vioscreen_lutzeax
3716.129452
vioscreen_lycopene
3910.75
vioscreen_lysine
9.285863922999999
vioscreen_m_egg
1.133397351
vioscreen_m_fish_hi
3.4275066219999997
vioscreen_m_fish_lo
2.440027524
vioscreen_m_frank
2.677260307
vioscreen_m_meat
1.663424557
vioscreen_m_mpf
11.44616465
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
1.237945139
vioscreen_m_soy
0.30747944
vioscreen_magnes
306.63872000000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.242904036
vioscreen_mangan
1.691314948
vioscreen_mannitol
0.105835619
vioscreen_methhis3
36.98205265
vioscreen_methion
3.0741645710000003
vioscreen_mfa141
0.09350684199999999
vioscreen_mfa161
1.7309036880000002
vioscreen_mfa181
29.40871415
vioscreen_mfa201
0.714821928
vioscreen_mfa221
0.627835626
vioscreen_mfatot
32.84071062
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
10.99550581
vioscreen_nccglbr
123.93125
vioscreen_nccglgr
86.70479987
vioscreen_niacin
25.19898331
vioscreen_niacineq
46.45278789
vioscreen_nitrogen
18.57619462
vioscreen_non_fried_fish_servings
7.517119999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.833863977
vioscreen_oxalic
171.496372
vioscreen_oxalicm
167.1285638
vioscreen_pantothe
4.941424644
vioscreen_pectins
1.272520551
vioscreen_pfa182
20.53887789
vioscreen_pfa183
1.948575289
vioscreen_pfa184
0.147589049
vioscreen_pfa204
0.279232893
vioscreen_pfa205
0.507616435
vioscreen_pfa225
0.1930959
vioscreen_pfa226
1.040684948
vioscreen_pfatot
24.87331443
vioscreen_phenylal
4.986493672
vioscreen_phosphor
1631.448288
vioscreen_phytic
619.0314639999999
vioscreen_pinitol
0.014054795
vioscreen_potass
2643.284247
vioscreen_procdate
10/28/15
vioscreen_proline
6.159069323
vioscreen_protanim
100.5967894
vioscreen_protein
115.85408819999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.25669012
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
285.0
vioscreen_retinol
435.1329623
vioscreen_rgrain
1.5108766319999998
vioscreen_ribofla
1.690931346
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.50658
vioscreen_satoco
0.0
vioscreen_selenium
148.35369219999998
vioscreen_serine
5.18120552
vioscreen_sfa100
0.353287663
vioscreen_sfa120
0.463671206
vioscreen_sfa140
2.1427670830000003
vioscreen_sfa160
15.02391642
vioscreen_sfa170
0.107917796
vioscreen_sfa180
6.256711526
vioscreen_sfa200
0.159589041
vioscreen_sfa220
0.084657538
vioscreen_sfa40
0.41753427200000004
vioscreen_sfa60
0.218246585
vioscreen_sfa80
0.17200000699999998
vioscreen_sfatot
25.86715004
vioscreen_sodium
4322.768493
vioscreen_sorbitol
0.170657526
vioscreen_srvid
20174.0
vioscreen_starch
71.55756099999999
vioscreen_started
7/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.19460081
vioscreen_sweet_servings
1.85205
vioscreen_tagatose
2.10997281
vioscreen_tfa161t
0.07356165
vioscreen_tfa181t
2.73471178
vioscreen_tfa182t
0.454794604
vioscreen_tgrain
5.038520374
vioscreen_thiamin
1.191342539
vioscreen_threonin
4.829506568
vioscreen_time
52.0
vioscreen_totaltfa
3.301917006
vioscreen_totcla
0.132739749
vioscreen_totfolat
213.7736515
vioscreen_totsugar
58.34640946
vioscreen_tryptoph
1.275643879
vioscreen_tyrosine
4.1520825530000005
vioscreen_user_id
20174.0
vioscreen_v_drkgr
0.251013706
vioscreen_v_orange
0.081397268
vioscreen_v_other
0.421835578
vioscreen_v_potato
0.335780815
vioscreen_v_starcy
0.078931505
vioscreen_v_tomato
0.181095886
vioscreen_v_total
1.350219141
vioscreen_valine
6.083205801
vioscreen_veg5_day
1.7
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
2.7
vioscreen_visit
1.0
vioscreen_vita_iu
7109.476712000001
vioscreen_vita_rae
718.0785959
vioscreen_vita_re
1001.023116
vioscreen_vitb12
10.03928791
vioscreen_vitb6
2.180328787
vioscreen_vitc
53.40319991
vioscreen_vitd
18.96169868
vioscreen_vitd2
0.000356164
vioscreen_vitd3
18.96134284
vioscreen_vitd_iu
758.4679472999999
vioscreen_vite_iu
16.40657508
vioscreen_vitk
172.8127033
vioscreen_water
2492.209075
vioscreen_weight
Not provided
vioscreen_wgrain
3.527644076
vioscreen_whole_grain_servings
0.37893000000000004
vioscreen_xylitol
0.011999998999999999
vioscreen_zinc
15.12430035
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)