American Gut Project; 10317.000031015
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634238
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031015
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031015
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
22.71
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-15
collection month
July
collection season
Summer
collection time
15:00
collection_timestamp
2015-07-15 15:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
10.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Never
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
082d47d776a5f1edbb100fda15c80a32855b87290417cdc4b8f346e1addfa0186ca3139a0da82a7ad39c3fe7f109681806b7bfdbfcbceda3b8ce4296618a5763
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.4
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031015
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
b0d0e6dce0f1cc32
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.002054795
vioscreen_a_cal
333.2238442
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.920328553
vioscreen_addsugar
40.21364244
vioscreen_adsugtot
37.25469018
vioscreen_age
215.0
vioscreen_alanine
2.198000221
vioscreen_alcohol
43.35430223
vioscreen_alcohol_servings
3.00205
vioscreen_alphacar
116.13235230000001
vioscreen_alphtoce
18.70446543
vioscreen_alphtoco
16.59646698
vioscreen_arginine
3.42958884
vioscreen_ash
17.30178189
vioscreen_aspartam
0.0
vioscreen_aspartic
5.233424524
vioscreen_avcarb
158.1866545
vioscreen_bcodeid
Not provided
vioscreen_betacar
1308.926884
vioscreen_betacryp
22.07139876
vioscreen_betaine
72.61395013
vioscreen_betatoco
0.843342402
vioscreen_biochana
0.004986300999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
340.203125
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.6987400000000001
vioscreen_calcium_servings
2.98312
vioscreen_calories
2276.4958899999997
vioscreen_carbo
176.2384953
vioscreen_cholest
182.59912240000003
vioscreen_choline
240.2468108
vioscreen_clac9t11
0.159698612
vioscreen_clat10c12
0.032054802
vioscreen_copper
1.278767123
vioscreen_coumest
0.21846574800000002
vioscreen_cystine
0.6689316
vioscreen_d_cheese
0.639835598
vioscreen_d_milk
0.804958897
vioscreen_d_tot_soym
1.698739833
vioscreen_d_total
1.698739833
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
1.185643862
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.257150645
vioscreen_discfat_oil
57.23095569
vioscreen_discfat_sol
48.39857663
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000630137
vioscreen_f_citmlb
0.121999997
vioscreen_f_nj_citmlb
0.120904102
vioscreen_f_nj_other
0.139041096
vioscreen_f_nj_total
0.259917816
vioscreen_f_other
0.140767126
vioscreen_f_total
0.26271232699999997
vioscreen_fat
123.447988
vioscreen_fiber
18.02849021
vioscreen_fibh2o
6.884657936
vioscreen_fibinso
11.18972603
vioscreen_finished
7/15/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
419.9519692
vioscreen_fol_nat
228.34486299999998
vioscreen_fol_syn
112.69953980000001
vioscreen_formontn
0.00320548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.5
vioscreen_fructose
3.5295339919999997
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
4.678383522
vioscreen_g_total
4.85013712
vioscreen_g_whl
0.171726018
vioscreen_galactos
0.387479474
vioscreen_gammtoco
17.38509471
vioscreen_gender
false
vioscreen_genistn
1.332904136
vioscreen_glac
72.46775471
vioscreen_gltc
77.72740261
vioscreen_glucose
4.467315925
vioscreen_glutamic
12.12512174
vioscreen_glycine
2.1063563519999997
vioscreen_glycitn
0.44065752399999997
vioscreen_grams
2990.020548
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
12.1
vioscreen_hei2010_fatty_acids
5.7
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
2.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.0
vioscreen_hei2010_score
58.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.7
vioscreen_hei2010_veg
2.3
vioscreen_hei2010_whole_fruit
1.4
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
1.3
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
1.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
48.7
vioscreen_hei_sodium
7.0
vioscreen_hei_sol_fat_alc_add_sug
6.4
vioscreen_hei_veg
2.3
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
1.3981095819999998
vioscreen_inositol
0.090054792
vioscreen_iron
9.550357181
vioscreen_isoleuc
2.292985974
vioscreen_isomalt
0.0
vioscreen_joules
9524.858219
vioscreen_juice_servings
0.00564
vioscreen_lactitol
0.0
vioscreen_lactose
14.89482288
vioscreen_legumes
0.24520547899999998
vioscreen_leucine
4.347150578
vioscreen_line_gi
345.4939854
vioscreen_low_fat_dairy_serving
0.24921
vioscreen_lutzeax
1010.1876710000001
vioscreen_lycopene
2579.0684929999998
vioscreen_lysine
2.89682149
vioscreen_m_egg
0.316301362
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.028712328
vioscreen_m_meat
0.04890411099999999
vioscreen_m_mpf
0.104191777
vioscreen_m_nutsd
4.38890431
vioscreen_m_organ
0.0
vioscreen_m_poult
0.026575342000000002
vioscreen_m_soy
0.33649315
vioscreen_magnes
353.8577269
vioscreen_maltitol
0.0
vioscreen_maltose
2.1447673640000002
vioscreen_mangan
3.0031775069999997
vioscreen_mannitol
0.071424657
vioscreen_methhis3
0.47336986
vioscreen_methion
1.043287805
vioscreen_mfa141
0.058657534000000004
vioscreen_mfa161
0.8266026329999999
vioscreen_mfa181
42.87742669
vioscreen_mfa201
0.5373424370000001
vioscreen_mfa221
0.0031232879999999997
vioscreen_mfatot
44.50626873
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
16.59646698
vioscreen_nccglbr
125.10845459999999
vioscreen_nccglgr
87.52297731
vioscreen_niacin
19.1426303
vioscreen_niacineq
29.29126177
vioscreen_nitrogen
9.263917353
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9512059880000001
vioscreen_oxalic
252.4465753
vioscreen_oxalicm
273.68508130000004
vioscreen_pantothe
4.988329075
vioscreen_pectins
1.935095884
vioscreen_pfa182
29.7945473
vioscreen_pfa183
1.934356271
vioscreen_pfa184
0.0019178079999999998
vioscreen_pfa204
0.039424653
vioscreen_pfa205
0.004082191
vioscreen_pfa225
0.0030410959999999996
vioscreen_pfa226
0.007808219
vioscreen_pfatot
31.83644317
vioscreen_phenylal
2.7326852460000004
vioscreen_phosphor
1172.96524
vioscreen_phytic
965.6413527000001
vioscreen_pinitol
0.014027398
vioscreen_potass
2346.0477739999997
vioscreen_procdate
10/28/15
vioscreen_proline
4.258383722
vioscreen_protanim
20.16684905
vioscreen_protein
55.36684503
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.19667434
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
290.0
vioscreen_retinol
376.8637842
vioscreen_rgrain
3.4639454460000003
vioscreen_ribofla
1.846301604
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.58699
vioscreen_satoco
0.0
vioscreen_selenium
98.78764983
vioscreen_serine
3.046273678
vioscreen_sfa100
1.075890528
vioscreen_sfa120
2.043671072
vioscreen_sfa140
3.95205446
vioscreen_sfa160
19.16969847
vioscreen_sfa170
0.17690408800000001
vioscreen_sfa180
8.494026916000001
vioscreen_sfa200
0.460767145
vioscreen_sfa220
0.73216444
vioscreen_sfa40
1.171753515
vioscreen_sfa60
0.7338082090000001
vioscreen_sfa80
0.6399452520000001
vioscreen_sfatot
39.21920484
vioscreen_sodium
2765.170377
vioscreen_sorbitol
0.07164384
vioscreen_srvid
20157.0
vioscreen_starch
77.92115261
vioscreen_started
7/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
39.29709707
vioscreen_sweet_servings
0.9550799999999999
vioscreen_tagatose
3.0254247380000003
vioscreen_tfa161t
0.040410962
vioscreen_tfa181t
1.869452155
vioscreen_tfa182t
0.494794454
vioscreen_tgrain
5.04224703
vioscreen_thiamin
1.4356438619999998
vioscreen_threonin
1.8549040490000002
vioscreen_time
30.0
vioscreen_totaltfa
2.4557807819999997
vioscreen_totcla
0.19227393199999998
vioscreen_totfolat
341.0443065
vioscreen_totsugar
64.85309289
vioscreen_tryptoph
0.6093425179999999
vioscreen_tyrosine
2.039233231
vioscreen_user_id
20157.0
vioscreen_v_drkgr
0.119260271
vioscreen_v_orange
0.015753425
vioscreen_v_other
0.32687674699999997
vioscreen_v_potato
0.44715066200000003
vioscreen_v_starcy
0.044328768
vioscreen_v_tomato
0.10534245699999999
vioscreen_v_total
1.0587123920000001
vioscreen_valine
2.8085479319999997
vioscreen_veg5_day
1.1
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
2.1
vioscreen_visit
1.0
vioscreen_vita_iu
3552.971918
vioscreen_vita_rae
491.70055650000006
vioscreen_vita_re
606.5349315000001
vioscreen_vitb12
2.218383455
vioscreen_vitb6
1.207232833
vioscreen_vitc
31.38076573
vioscreen_vitd
4.021670992
vioscreen_vitd2
0.0007123289999999999
vioscreen_vitd3
4.020986395
vioscreen_vitd_iu
160.86683969999999
vioscreen_vite_iu
24.73071222
vioscreen_vitk
72.02324486
vioscreen_water
2596.006507
vioscreen_weight
Not provided
vioscreen_wgrain
1.578273993
vioscreen_whole_grain_servings
0.17173
vioscreen_xylitol
0.012328767
vioscreen_zinc
7.580602526
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)