American Gut Project; 10317.000023237
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632655
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023237
acid_reflux
Not provided
acne medication
Not provided
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
74.0
age_corrected
74.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23237
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1941.0
bmi
25.1
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-02-16
collection month
February
collection season
Winter
collection time
10:15
collection_timestamp
2015-02-16 10:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
18.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
738c41c9505dcbc6835a0275ccef734e3b83ec70fcaad7f2008b8703863ad674fa70fbf9e812fe0fd17aa5b1c19ae5eab62e5472cd29f8a775575b9af7183d9b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.0
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000023237
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
02124630961a0480
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.392273953
vioscreen_a_cal
298.6139983
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.19323279
vioscreen_addsugar
23.05348084
vioscreen_adsugtot
17.90175246
vioscreen_age
215.0
vioscreen_alanine
1.818273926
vioscreen_alcohol
37.40701252
vioscreen_alcohol_servings
2.39227
vioscreen_alphacar
1309.143408
vioscreen_alphtoce
12.74939801
vioscreen_alphtoco
11.80068493
vioscreen_arginine
2.862849155
vioscreen_ash
17.90169628
vioscreen_aspartam
0.0
vioscreen_aspartic
4.2401644769999995
vioscreen_avcarb
136.5149401
vioscreen_bcodeid
Not provided
vioscreen_betacar
12561.36849
vioscreen_betacryp
173.76750859999999
vioscreen_betaine
133.6985659
vioscreen_betatoco
0.39643839
vioscreen_biochana
0.005972602
vioscreen_bmi
Not provided
vioscreen_caffeine
142.1594178
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.27784000000000003
vioscreen_calcium_servings
2.68485
vioscreen_calories
1539.064212
vioscreen_carbo
162.79909030000002
vioscreen_cholest
118.09814850000001
vioscreen_choline
267.22495719999995
vioscreen_clac9t11
0.016246576000000002
vioscreen_clat10c12
0.004164384
vioscreen_copper
1.648191687
vioscreen_coumest
0.277726035
vioscreen_cystine
0.653123244
vioscreen_d_cheese
0.25268492
vioscreen_d_milk
0.024767123
vioscreen_d_tot_soym
1.433862974
vioscreen_d_total
0.277835606
vioscreen_d_yogurt
0.0
vioscreen_daidzein
10.569424900000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.002958784
vioscreen_discfat_oil
32.14166845
vioscreen_discfat_sol
10.33635622
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000876712
vioscreen_f_citmlb
0.253835621
vioscreen_f_nj_citmlb
0.253835621
vioscreen_f_nj_other
0.476821858
vioscreen_f_nj_total
0.730630033
vioscreen_f_other
0.476821858
vioscreen_f_total
0.730630033
vioscreen_fat
54.97335188
vioscreen_fiber
26.28175567
vioscreen_fibh2o
7.90027424
vioscreen_fibinso
18.47038474
vioscreen_finished
2/10/15
vioscreen_fish_servings
0.10904000000000001
vioscreen_fol_deqv
364.2524401
vioscreen_fol_nat
317.5162671
vioscreen_fol_syn
27.47884739
vioscreen_formontn
0.002082192
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.5
vioscreen_fructose
10.29016347
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
1.3025480090000001
vioscreen_g_total
4.708603449
vioscreen_g_whl
3.406054688
vioscreen_galactos
0.113178076
vioscreen_gammtoco
7.703039383999999
vioscreen_gender
false
vioscreen_genistn
12.47539598
vioscreen_glac
58.06741224
vioscreen_gltc
66.71857342
vioscreen_glucose
10.40306748
vioscreen_glutamic
8.110110097
vioscreen_glycine
1.767863067
vioscreen_glycitn
1.8211780290000001
vioscreen_grams
4136.649658
vioscreen_hei2010_dairy
7.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
87.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.8
vioscreen_hei_milk
7.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.5
vioscreen_hei_sodium
2.7
vioscreen_hei_sol_fat_alc_add_sug
14.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
0.954630144
vioscreen_inositol
0.22523287399999997
vioscreen_iron
12.08920564
vioscreen_isoleuc
1.663369876
vioscreen_isomalt
0.0
vioscreen_joules
6439.4410960000005
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.47512332399999996
vioscreen_legumes
0.09328768
vioscreen_leucine
2.9483562310000004
vioscreen_line_gi
306.1740796
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
11472.733559999999
vioscreen_lycopene
631.4705908
vioscreen_lysine
2.105808206
vioscreen_m_egg
0.50230136
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.06210958900000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.06893150599999999
vioscreen_m_mpf
0.193808213
vioscreen_m_nutsd
1.7053424990000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.062767123
vioscreen_m_soy
1.37816438
vioscreen_magnes
417.1207192
vioscreen_maltitol
0.0
vioscreen_maltose
5.9421386720000005
vioscreen_mangan
5.290218991000001
vioscreen_mannitol
0.23802741100000002
vioscreen_methhis3
0.68123286
vioscreen_methion
0.69186301
vioscreen_mfa141
0.02060274
vioscreen_mfa161
0.43446579999999996
vioscreen_mfa181
24.22060413
vioscreen_mfa201
0.242164403
vioscreen_mfa221
0.0016712329999999998
vioscreen_mfatot
25.10057256
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
11.80068493
vioscreen_nccglbr
110.6855415
vioscreen_nccglgr
77.42109375
vioscreen_niacin
12.99890572
vioscreen_niacineq
21.55862987
vioscreen_nitrogen
7.434273999
vioscreen_non_fried_fish_servings
0.10904000000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.073972268
vioscreen_oxalic
653.6125856000001
vioscreen_oxalicm
645.6156678
vioscreen_pantothe
3.914219352
vioscreen_pectins
3.611315416
vioscreen_pfa182
13.11936938
vioscreen_pfa183
1.053369726
vioscreen_pfa184
0.000739726
vioscreen_pfa204
0.045917809000000004
vioscreen_pfa205
0.004849315
vioscreen_pfa225
0.001780822
vioscreen_pfa226
0.013260273999999999
vioscreen_pfatot
14.54021966
vioscreen_phenylal
1.9583833880000001
vioscreen_phosphor
1022.037757
vioscreen_phytic
1078.808733
vioscreen_pinitol
0.061917809000000004
vioscreen_potass
2792.757021
vioscreen_procdate
10/28/15
vioscreen_proline
2.29934266
vioscreen_protanim
7.786302039
vioscreen_protein
44.51638752
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
36.73046875
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
566.0
vioscreen_retinol
250.79464900000002
vioscreen_rgrain
0.91939714
vioscreen_ribofla
1.5212330440000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.9971
vioscreen_satoco
0.0
vioscreen_selenium
74.54412992
vioscreen_serine
2.131753498
vioscreen_sfa100
0.11334247300000001
vioscreen_sfa120
0.251890418
vioscreen_sfa140
0.585753391
vioscreen_sfa160
7.302438062
vioscreen_sfa170
0.029205479
vioscreen_sfa180
2.338410845
vioscreen_sfa200
0.206684938
vioscreen_sfa220
0.296493133
vioscreen_sfa40
0.12520548199999998
vioscreen_sfa60
0.062657537
vioscreen_sfa80
0.064000002
vioscreen_sfatot
11.65013779
vioscreen_sodium
2611.886986
vioscreen_sorbitol
0.530027416
vioscreen_srvid
17126.0
vioscreen_starch
68.3880244
vioscreen_started
2/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
17.63230282
vioscreen_sweet_servings
0.09315
vioscreen_tagatose
0.044739725999999994
vioscreen_tfa161t
0.01471233
vioscreen_tfa181t
0.5860273810000001
vioscreen_tfa182t
0.123452069
vioscreen_tgrain
4.819178082
vioscreen_thiamin
1.139479546
vioscreen_threonin
1.487041149
vioscreen_time
23.0
vioscreen_totaltfa
0.773890414
vioscreen_totcla
0.020630139
vioscreen_totfolat
344.99511989999996
vioscreen_totsugar
45.69958797
vioscreen_tryptoph
0.513369793
vioscreen_tyrosine
1.3732879219999998
vioscreen_user_id
17126.0
vioscreen_v_drkgr
1.0747944870000001
vioscreen_v_orange
0.414520515
vioscreen_v_other
1.189342342
vioscreen_v_potato
0.15386301300000002
vioscreen_v_starcy
0.12331507400000001
vioscreen_v_tomato
0.032684932
vioscreen_v_total
2.988548132
vioscreen_valine
1.985233171
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
23006.42466
vioscreen_vita_rae
1359.363613
vioscreen_vita_re
2467.932534
vioscreen_vitb12
1.8413699630000002
vioscreen_vitb6
1.404959065
vioscreen_vitc
101.4428189
vioscreen_vitd
3.974081964
vioscreen_vitd2
2.98030153
vioscreen_vitd3
0.993780852
vioscreen_vitd_iu
158.9632786
vioscreen_vite_iu
17.58643916
vioscreen_vitk
453.7260702
vioscreen_water
3826.216096
vioscreen_weight
Not provided
vioscreen_wgrain
3.8998080319999997
vioscreen_whole_grain_servings
3.40605
vioscreen_xylitol
0.080000007
vioscreen_zinc
7.292931962000001
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)