American Gut Project; 10317.000023030
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632614
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023030
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23030
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
25.69
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-23
collection month
March
collection season
Spring
collection time
15:15
collection_timestamp
2015-03-23 15:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Mideast
elevation
224.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
73140b4a08bd290136838a2e22d29c2dfa3fc6bc27e29f65b5f278019ff60694fb3bc87658a37350e6f9c988a11d4a632faab4cdf6e6c0129c43666152f6fcfb
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-76.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000023030
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
80aad40ecc231676
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.065424655
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.470739913
vioscreen_addsugar
15.26372672
vioscreen_adsugtot
14.29271324
vioscreen_age
215.0
vioscreen_alanine
2.9903015969999998
vioscreen_alcohol
0.9382465520000001
vioscreen_alcohol_servings
0.06542
vioscreen_alphacar
1357.849144
vioscreen_alphtoce
7.075698309
vioscreen_alphtoco
6.306957004
vioscreen_arginine
3.306246321
vioscreen_ash
13.387287300000002
vioscreen_aspartam
0.0
vioscreen_aspartic
5.082274053
vioscreen_avcarb
71.27221212
vioscreen_bcodeid
Not provided
vioscreen_betacar
7942.203425
vioscreen_betacryp
64.57145227
vioscreen_betaine
63.49394264
vioscreen_betatoco
0.144794537
vioscreen_biochana
0.0047945209999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
107.16444779999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.28241
vioscreen_calcium_servings
1.31701
vioscreen_calories
1113.6976029999998
vioscreen_carbo
82.18115368
vioscreen_cholest
435.23227740000004
vioscreen_choline
409.8202911
vioscreen_clac9t11
0.111643836
vioscreen_clat10c12
0.026301376
vioscreen_copper
0.734986355
vioscreen_coumest
0.096109584
vioscreen_cystine
0.7600821720000001
vioscreen_d_cheese
0.05487671400000001
vioscreen_d_milk
0.227178077
vioscreen_d_tot_soym
0.282410964
vioscreen_d_total
0.282410964
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.14649315400000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.671452102
vioscreen_discfat_oil
15.684194400000003
vioscreen_discfat_sol
34.32562072
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.220958887
vioscreen_f_nj_citmlb
0.11241095599999999
vioscreen_f_nj_other
0.274931503
vioscreen_f_nj_total
0.38734243700000004
vioscreen_f_other
0.274931503
vioscreen_f_total
0.495890369
vioscreen_fat
64.32104559
vioscreen_fiber
10.89775324
vioscreen_fibh2o
3.62783571
vioscreen_fibinso
7.267644344
vioscreen_finished
1/12/15
vioscreen_fish_servings
0.7601899999999999
vioscreen_fol_deqv
240.0694563
vioscreen_fol_nat
176.4271725
vioscreen_fol_syn
37.44008455
vioscreen_formontn
0.000986301
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
0.6
vioscreen_frtsumm
1.0
vioscreen_fructose
6.0807396460000005
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.666493037
vioscreen_g_total
1.6859177680000001
vioscreen_g_whl
0.019424658
vioscreen_galactos
0.072273981
vioscreen_gammtoco
6.945398116000001
vioscreen_gender
false
vioscreen_genistn
0.11405480800000001
vioscreen_glac
35.14093001
vioscreen_gltc
38.56879281
vioscreen_glucose
7.621616812999999
vioscreen_glutamic
8.674793317
vioscreen_glycine
2.7610137519999998
vioscreen_glycitn
0.010547945
vioscreen_grams
2557.50839
vioscreen_hei2010_dairy
2.0
vioscreen_hei2010_empty_calories
11.0
vioscreen_hei2010_fatty_acids
2.9
vioscreen_hei2010_fruit
2.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
51.7
vioscreen_hei2010_sea_foods_plant_protiens
3.6
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.3
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.8
vioscreen_hei_grains
2.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.0
vioscreen_hei_non_juice_frt
4.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.517863067
vioscreen_inositol
0.07197260400000001
vioscreen_iron
7.656575075
vioscreen_isoleuc
2.466411267
vioscreen_isomalt
0.0
vioscreen_joules
4659.710959
vioscreen_juice_servings
0.21706999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
2.7967398869999998
vioscreen_legumes
0.015726027
vioscreen_leucine
4.153205600000001
vioscreen_line_gi
166.78075769999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
7935.953425
vioscreen_lycopene
1527.789726
vioscreen_lysine
3.927945072
vioscreen_m_egg
1.60649297
vioscreen_m_fish_hi
0.086246574
vioscreen_m_fish_lo
0.346958902
vioscreen_m_frank
0.53515069
vioscreen_m_meat
2.6187122080000003
vioscreen_m_mpf
3.845040935
vioscreen_m_nutsd
0.203041098
vioscreen_m_organ
0.0
vioscreen_m_poult
0.257999995
vioscreen_m_soy
0.000876712
vioscreen_magnes
167.87930219999998
vioscreen_maltitol
0.0
vioscreen_maltose
1.073890414
vioscreen_mangan
1.3546026359999999
vioscreen_mannitol
0.12027397699999999
vioscreen_methhis3
14.9815336
vioscreen_methion
1.319589024
vioscreen_mfa141
0.114328745
vioscreen_mfa161
1.257616435
vioscreen_mfa181
23.27246629
vioscreen_mfa201
0.20378081399999998
vioscreen_mfa221
0.011534248
vioscreen_mfatot
25.08131689
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.306957004
vioscreen_nccglbr
61.14747432
vioscreen_nccglgr
42.77222282
vioscreen_niacin
11.94427306
vioscreen_niacineq
20.63126204
vioscreen_nitrogen
8.64331456
vioscreen_non_fried_fish_servings
0.7601899999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.076739836
vioscreen_oxalic
261.7446704
vioscreen_oxalicm
273.3002783
vioscreen_pantothe
3.857095797
vioscreen_pectins
2.130301196
vioscreen_pfa182
9.258162992
vioscreen_pfa183
0.9870411490000001
vioscreen_pfa184
0.001150685
vioscreen_pfa204
0.180493143
vioscreen_pfa205
0.01761644
vioscreen_pfa225
0.013260273000000001
vioscreen_pfa226
0.058465749000000004
vioscreen_pfatot
10.56657615
vioscreen_phenylal
2.343972569
vioscreen_phosphor
670.7771404
vioscreen_phytic
189.96735869999998
vioscreen_pinitol
0.001068493
vioscreen_potass
1701.7246579999999
vioscreen_procdate
10/28/15
vioscreen_proline
2.813589269
vioscreen_protanim
43.0114512
vioscreen_protein
53.67983198
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
10.66903896
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
626.0
vioscreen_retinol
260.74398540000004
vioscreen_rgrain
1.5468766719999998
vioscreen_ribofla
1.275178089
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.40679
vioscreen_satoco
0.0
vioscreen_selenium
75.83420912
vioscreen_serine
2.575369723
vioscreen_sfa100
0.40312332799999995
vioscreen_sfa120
0.7616164120000001
vioscreen_sfa140
1.7226572530000002
vioscreen_sfa160
12.40709279
vioscreen_sfa170
0.193260276
vioscreen_sfa180
5.823946516
vioscreen_sfa200
0.108301356
vioscreen_sfa220
0.07016439
vioscreen_sfa40
0.44380819200000005
vioscreen_sfa60
0.261260255
vioscreen_sfa80
0.208191775
vioscreen_sfatot
22.56879548
vioscreen_sodium
2478.9839039999997
vioscreen_sorbitol
0.088739735
vioscreen_srvid
16850.0
vioscreen_starch
31.27922464
vioscreen_started
1/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.85843857
vioscreen_sweet_servings
0.45098
vioscreen_tagatose
0.8272602240000001
vioscreen_tfa161t
0.044849322999999996
vioscreen_tfa181t
1.6786577619999998
vioscreen_tfa182t
0.27336988100000004
vioscreen_tgrain
1.681917875
vioscreen_thiamin
0.7443288309999999
vioscreen_threonin
2.203972636
vioscreen_time
17.0
vioscreen_totaltfa
2.008164664
vioscreen_totcla
0.13808220599999999
vioscreen_totfolat
213.8671661
vioscreen_totsugar
33.38819831
vioscreen_tryptoph
0.521369913
vioscreen_tyrosine
1.823616425
vioscreen_user_id
16850.0
vioscreen_v_drkgr
0.46369858799999997
vioscreen_v_orange
0.317205455
vioscreen_v_other
0.42208222700000003
vioscreen_v_potato
0.21309588699999998
vioscreen_v_starcy
0.112684934
vioscreen_v_tomato
0.093643836
vioscreen_v_total
1.622411106
vioscreen_valine
2.7595616169999997
vioscreen_veg5_day
2.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.2
vioscreen_visit
1.0
vioscreen_vita_iu
15290.91096
vioscreen_vita_rae
981.8625
vioscreen_vita_re
1702.980308
vioscreen_vitb12
3.6650962519999997
vioscreen_vitb6
1.141862927
vioscreen_vitc
56.754436
vioscreen_vitd
3.5264387569999998
vioscreen_vitd2
0.001068493
vioscreen_vitd3
3.5254247380000003
vioscreen_vitd_iu
141.0575503
vioscreen_vite_iu
9.399970569
vioscreen_vitk
313.9360873
vioscreen_water
2366.874486
vioscreen_weight
Not provided
vioscreen_wgrain
0.135013695
vioscreen_whole_grain_servings
0.01942
vioscreen_xylitol
0.012493151999999999
vioscreen_zinc
7.875862184
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never