American Gut Project; 10317.000031005
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634233
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031005
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
30.0
age_corrected
30.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031005
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1985.0
bmi
23.17
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-13
collection month
August
collection season
Summer
collection time
16:10
collection_timestamp
2015-08-13 16:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
337.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
93e508065bdb7cd64df44e7990cb71e0c60286216a9ec6a489b37aa0b68ecc83b4dcc6f939902bd4372f0b83c996f2cc0682725ed93420a078ad0086bc938174
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-80.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not sure
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031005
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5b951d92e3b4f049
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.5156985769999998
vioscreen_a_cal
390.6478168
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.783506796
vioscreen_addsugar
19.25641053
vioscreen_adsugtot
14.08553484
vioscreen_age
215.0
vioscreen_alanine
6.589726027
vioscreen_alcohol
51.82364619
vioscreen_alcohol_servings
3.5157
vioscreen_alphacar
4408.253082
vioscreen_alphtoce
20.505998499999997
vioscreen_alphtoco
19.3217546
vioscreen_arginine
7.36605442
vioscreen_ash
25.47950557
vioscreen_aspartam
0.0
vioscreen_aspartic
12.18328874
vioscreen_avcarb
91.98507063
vioscreen_bcodeid
Not provided
vioscreen_betacar
28288.145210000002
vioscreen_betacryp
1010.3553939999999
vioscreen_betaine
89.9270655
vioscreen_betatoco
0.378767123
vioscreen_biochana
0.00660274
vioscreen_bmi
Not provided
vioscreen_caffeine
71.53706657
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.06616
vioscreen_calcium_servings
2.00331
vioscreen_calories
2088.332363
vioscreen_carbo
116.8105415
vioscreen_cholest
553.3356163999999
vioscreen_choline
645.2319777
vioscreen_clac9t11
0.029315071
vioscreen_clat10c12
0.006328767
vioscreen_copper
1.6385207080000002
vioscreen_coumest
0.000383562
vioscreen_cystine
1.5883561640000001
vioscreen_d_cheese
0.003589041
vioscreen_d_milk
0.062438352999999995
vioscreen_d_tot_soym
0.066164383
vioscreen_d_total
0.066164383
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.880356128
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.193890297
vioscreen_discfat_oil
44.95726134
vioscreen_discfat_sol
22.32802601
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.042876711
vioscreen_f_nj_citmlb
0.021178082
vioscreen_f_nj_other
0.215315079
vioscreen_f_nj_total
0.236493171
vioscreen_f_other
0.215315079
vioscreen_f_total
0.258219199
vioscreen_fat
91.37228168
vioscreen_fiber
24.82622003
vioscreen_fibh2o
5.376575878
vioscreen_fibinso
19.49463024
vioscreen_finished
8/13/15
vioscreen_fish_servings
9.47692
vioscreen_fol_deqv
508.6526113
vioscreen_fol_nat
502.6133134
vioscreen_fol_syn
3.549945152
vioscreen_formontn
0.000136986
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.5
vioscreen_fructose
16.8784086
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.147013709
vioscreen_g_total
0.147013709
vioscreen_g_whl
0.0
vioscreen_galactos
0.177150695
vioscreen_gammtoco
10.12512241
vioscreen_gender
false
vioscreen_genistn
1.368465894
vioscreen_glac
13.66010943
vioscreen_gltc
16.30964121
vioscreen_glucose
18.72967145
vioscreen_glutamic
18.333397100000003
vioscreen_glycine
5.528630337999999
vioscreen_glycitn
0.224794529
vioscreen_grams
5708.157534
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
18.4
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.4
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
1.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.3
vioscreen_hei_score
54.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
13.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.231369729
vioscreen_inositol
0.16139727
vioscreen_iron
13.04128719
vioscreen_isoleuc
5.636904029
vioscreen_isomalt
0.0
vioscreen_joules
8737.575342
vioscreen_juice_servings
0.04348
vioscreen_lactitol
0.0
vioscreen_lactose
0.614328755
vioscreen_legumes
0.002191781
vioscreen_leucine
8.854520949
vioscreen_line_gi
119.68245929999999
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
16217.41096
vioscreen_lycopene
4347.912671
vioscreen_lysine
9.565807604
vioscreen_m_egg
1.783808293
vioscreen_m_fish_hi
3.559232529
vioscreen_m_fish_lo
1.841369796
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
11.26531464
vioscreen_m_nutsd
0.21301369899999997
vioscreen_m_organ
0.0
vioscreen_m_poult
5.864821677
vioscreen_m_soy
0.110383564
vioscreen_magnes
380.7638699
vioscreen_maltitol
0.0
vioscreen_maltose
2.407479566
vioscreen_mangan
3.7630136989999996
vioscreen_mannitol
0.473424666
vioscreen_methhis3
38.16654538
vioscreen_methion
3.08556159
vioscreen_mfa141
0.010383561999999999
vioscreen_mfa161
1.946904096
vioscreen_mfa181
42.92869221
vioscreen_mfa201
0.75613696
vioscreen_mfa221
0.6449863379999999
vioscreen_mfatot
46.47984803
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
19.3217546
vioscreen_nccglbr
76.92184825
vioscreen_nccglgr
53.80106485
vioscreen_niacin
32.24758669
vioscreen_niacineq
55.01458155
vioscreen_nitrogen
18.78748127
vioscreen_non_fried_fish_servings
9.47692
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.314492923
vioscreen_oxalic
592.5252997
vioscreen_oxalicm
556.8918664
vioscreen_pantothe
6.738055169
vioscreen_pectins
5.604054072
vioscreen_pfa182
15.28109883
vioscreen_pfa183
1.393150434
vioscreen_pfa184
0.144109595
vioscreen_pfa204
0.44624658899999997
vioscreen_pfa205
0.500547937
vioscreen_pfa225
0.21260273600000001
vioscreen_pfa226
1.065588964
vioscreen_pfatot
19.26454944
vioscreen_phenylal
4.920547945
vioscreen_phosphor
1353.030051
vioscreen_phytic
265.9888057
vioscreen_pinitol
0.003863014
vioscreen_potass
4425.263356
vioscreen_procdate
10/28/15
vioscreen_proline
4.682821864
vioscreen_protanim
98.95922517
vioscreen_protein
117.15983519999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.20107021
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
207.0
vioscreen_retinol
257.25492290000005
vioscreen_rgrain
0.248438357
vioscreen_ribofla
1.777506789
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
10.20186
vioscreen_satoco
0.0
vioscreen_selenium
142.2865154
vioscreen_serine
5.016548387
vioscreen_sfa100
0.010684932
vioscreen_sfa120
0.058273974000000006
vioscreen_sfa140
0.517890366
vioscreen_sfa160
13.12616385
vioscreen_sfa170
0.053972605
vioscreen_sfa180
4.252986208
vioscreen_sfa200
0.228273972
vioscreen_sfa220
0.077999993
vioscreen_sfa40
0.011232878
vioscreen_sfa60
0.005424658000000001
vioscreen_sfa80
0.004821918
vioscreen_sfatot
18.56485044
vioscreen_sodium
4259.299315
vioscreen_sorbitol
0.07361644099999999
vioscreen_srvid
20393.0
vioscreen_starch
13.37391642
vioscreen_started
8/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.85268354
vioscreen_sweet_servings
0.8547899999999999
vioscreen_tagatose
0.0010136989999999999
vioscreen_tfa161t
0.029150686000000002
vioscreen_tfa181t
1.4528219980000001
vioscreen_tfa182t
0.30073973800000003
vioscreen_tgrain
0.248438357
vioscreen_thiamin
1.000602576
vioscreen_threonin
5.125233103999999
vioscreen_time
9.0
vioscreen_totaltfa
1.8033149609999999
vioscreen_totcla
0.036712327999999995
vioscreen_totfolat
506.1632277
vioscreen_totsugar
53.40477847
vioscreen_tryptoph
1.363150735
vioscreen_tyrosine
3.96035591
vioscreen_user_id
20393.0
vioscreen_v_drkgr
1.529698704
vioscreen_v_orange
1.186821924
vioscreen_v_other
5.3915895229999995
vioscreen_v_potato
0.008219178
vioscreen_v_starcy
0.075561644
vioscreen_v_tomato
0.37309591200000003
vioscreen_v_total
8.565232368
vioscreen_valine
5.921835536000001
vioscreen_veg5_day
17.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
17.1
vioscreen_visit
1.0
vioscreen_vita_iu
52519.87945
vioscreen_vita_rae
2840.376199
vioscreen_vita_re
5423.500342
vioscreen_vitb12
6.786000375
vioscreen_vitb6
3.632027571
vioscreen_vitc
519.9945205
vioscreen_vitd
17.96937072
vioscreen_vitd2
0.001589041
vioscreen_vitd3
17.96778146
vioscreen_vitd_iu
718.7748288
vioscreen_vite_iu
28.83772474
vioscreen_vitk
664.7204195
vioscreen_water
5322.820205
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.067150686
vioscreen_zinc
10.46906839
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never