American Gut Project; 10317.000029331
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633692
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029331
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
69.0
age_corrected
69.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29331
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1946.0
bmi
24.69
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/02/2015
collection month
July
collection season
Summer
collection time
07:30
collection_timestamp
2015-07-02 07:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
43.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
4b436a13c602436287cd59dce15543bf721ca73bd19142fd847f38a1343863cbbf7603d4fe7b08cc9d8be7e7be282dd9ef11d574bf0bd3a24fa58c9bc1ccb2f6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
50.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029331
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
0550dd9e11b327db
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.997944537
vioscreen_addsugar
45.30813356
vioscreen_adsugtot
43.0006555
vioscreen_age
215.0
vioscreen_alanine
2.5099448840000003
vioscreen_alcohol
0.857589095
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
2185.3378420000004
vioscreen_alphtoce
12.18139715
vioscreen_alphtoco
10.94558942
vioscreen_arginine
3.005040668
vioscreen_ash
20.73186403
vioscreen_aspartam
0.0
vioscreen_aspartic
5.980383802
vioscreen_avcarb
195.5904324
vioscreen_bcodeid
Not provided
vioscreen_betacar
9279.271233
vioscreen_betacryp
130.184086
vioscreen_betaine
104.5357984
vioscreen_betatoco
0.39893146700000004
vioscreen_biochana
0.012767124
vioscreen_bmi
Not provided
vioscreen_caffeine
449.90385269999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.18195
vioscreen_calcium_servings
4.61745
vioscreen_calories
1732.240925
vioscreen_carbo
221.8491438
vioscreen_cholest
237.53799229999998
vioscreen_choline
342.1739298
vioscreen_clac9t11
0.116904115
vioscreen_clat10c12
0.018904111
vioscreen_copper
1.327917899
vioscreen_coumest
0.253068501
vioscreen_cystine
0.687205526
vioscreen_d_cheese
0.9960001070000001
vioscreen_d_milk
1.431726241
vioscreen_d_tot_soym
3.1819452989999997
vioscreen_d_total
3.1819452989999997
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.507287723
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.91720556
vioscreen_discfat_oil
20.17838319
vioscreen_discfat_sol
41.07232716
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0030410959999999996
vioscreen_f_citmlb
0.581369855
vioscreen_f_nj_citmlb
0.531095907
vioscreen_f_nj_other
1.5624382959999998
vioscreen_f_nj_total
2.0935342869999998
vioscreen_f_other
1.61202727
vioscreen_f_total
2.193397334
vioscreen_fat
73.50328018
vioscreen_fiber
26.2494756
vioscreen_fibh2o
7.992135996
vioscreen_fibinso
18.37751097
vioscreen_finished
6/23/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
469.8262414
vioscreen_fol_nat
385.63908389999995
vioscreen_fol_syn
49.488789600000004
vioscreen_formontn
0.002821918
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
3.1
vioscreen_frtsumm
4.4
vioscreen_fructose
23.87550567
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.247999886
vioscreen_g_total
2.887753505
vioscreen_g_whl
0.63975341
vioscreen_galactos
1.150219141
vioscreen_gammtoco
10.58101188
vioscreen_gender
false
vioscreen_genistn
0.37213703299999995
vioscreen_glac
81.94972175
vioscreen_gltc
90.27153253
vioscreen_glucose
23.59005779
vioscreen_glutamic
13.53572613
vioscreen_glycine
1.9307943269999999
vioscreen_glycitn
0.178575343
vioscreen_grams
3739.0
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.2
vioscreen_hei2010_fatty_acids
1.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.7
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
67.0
vioscreen_hei_sodium
4.4
vioscreen_hei_sol_fat_alc_add_sug
12.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
1.6425476909999999
vioscreen_inositol
0.14635618
vioscreen_iron
8.912572908
vioscreen_isoleuc
2.868602847
vioscreen_isomalt
0.0
vioscreen_joules
7247.695890000001
vioscreen_juice_servings
0.1997
vioscreen_lactitol
0.0
vioscreen_lactose
29.64356539
vioscreen_legumes
0.076958899
vioscreen_leucine
5.0667129310000005
vioscreen_line_gi
450.5947774
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
4934.279795
vioscreen_lycopene
7172.037670999999
vioscreen_lysine
4.0532604480000005
vioscreen_m_egg
0.630109562
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.053342464000000006
vioscreen_m_meat
0.039972602999999995
vioscreen_m_mpf
0.146273971
vioscreen_m_nutsd
1.721890551
vioscreen_m_organ
0.0
vioscreen_m_poult
0.052986302
vioscreen_m_soy
0.002191781
vioscreen_magnes
374.7413527
vioscreen_maltitol
0.0
vioscreen_maltose
1.744383595
vioscreen_mangan
5.06956135
vioscreen_mannitol
0.479808233
vioscreen_methhis3
0.658986298
vioscreen_methion
1.357424634
vioscreen_mfa141
0.133397257
vioscreen_mfa161
0.880000117
vioscreen_mfa181
23.86441299
vioscreen_mfa201
0.251315057
vioscreen_mfa221
0.003890411
vioscreen_mfatot
25.33660638
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.94558942
vioscreen_nccglbr
141.42963400000002
vioscreen_nccglgr
98.93286601
vioscreen_niacin
14.67345088
vioscreen_niacineq
26.2901113
vioscreen_nitrogen
10.32419133
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.134959014
vioscreen_oxalic
331.26551800000004
vioscreen_oxalicm
346.8785959
vioscreen_pantothe
6.906246656
vioscreen_pectins
4.767260408
vioscreen_pfa182
12.09643755
vioscreen_pfa183
1.1087946640000002
vioscreen_pfa184
0.0018630139999999999
vioscreen_pfa204
0.068082193
vioscreen_pfa205
0.004630136
vioscreen_pfa225
0.004821918
vioscreen_pfa226
0.014739726000000002
vioscreen_pfatot
13.35117856
vioscreen_phenylal
3.0413152830000003
vioscreen_phosphor
1435.685017
vioscreen_phytic
621.1923373
vioscreen_pinitol
0.003178082
vioscreen_potass
4090.4020549999996
vioscreen_procdate
10/28/15
vioscreen_proline
5.116629655
vioscreen_protanim
36.60923052
vioscreen_protein
63.62992295
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.00964255
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
374.0
vioscreen_retinol
478.6153682
vioscreen_rgrain
2.139178216
vioscreen_ribofla
2.605397514
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.008380000000001
vioscreen_satoco
0.0
vioscreen_selenium
82.14860338
vioscreen_serine
3.415314975
vioscreen_sfa100
0.855972666
vioscreen_sfa120
1.3322738859999999
vioscreen_sfa140
3.328740034
vioscreen_sfa160
14.17095997
vioscreen_sfa170
0.156684928
vioscreen_sfa180
5.863890597999999
vioscreen_sfa200
0.20109587399999998
vioscreen_sfa220
0.297726022
vioscreen_sfa40
1.046191741
vioscreen_sfa60
0.574602686
vioscreen_sfa80
0.41353421100000004
vioscreen_sfatot
28.83155768
vioscreen_sodium
2597.755479
vioscreen_sorbitol
1.190876749
vioscreen_srvid
19956.0
vioscreen_starch
52.83256635
vioscreen_started
6/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.52562072
vioscreen_sweet_servings
0.52689
vioscreen_tagatose
5.900027424
vioscreen_tfa161t
0.049369864000000006
vioscreen_tfa181t
1.577068339
vioscreen_tfa182t
0.28750685600000003
vioscreen_tgrain
3.012383615
vioscreen_thiamin
1.277095847
vioscreen_threonin
2.407671199
vioscreen_time
30.0
vioscreen_totaltfa
1.9538631069999999
vioscreen_totcla
0.135863004
vioscreen_totfolat
435.1277825
vioscreen_totsugar
129.9041631
vioscreen_tryptoph
0.6970410490000001
vioscreen_tyrosine
2.476657146
vioscreen_user_id
19956.0
vioscreen_v_drkgr
0.716356168
vioscreen_v_orange
0.39342463200000005
vioscreen_v_other
0.771506866
vioscreen_v_potato
0.252136983
vioscreen_v_starcy
0.208931513
vioscreen_v_tomato
1.10706854
vioscreen_v_total
3.449425433
vioscreen_valine
3.609150257
vioscreen_veg5_day
5.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
18990.7411
vioscreen_vita_rae
1348.368921
vioscreen_vita_re
2218.122432
vioscreen_vitb12
3.8760544869999998
vioscreen_vitb6
1.5798630809999998
vioscreen_vitc
144.2576627
vioscreen_vitd
6.768602177999999
vioscreen_vitd2
0.002082192
vioscreen_vitd3
6.7665748070000005
vioscreen_vitd_iu
270.7440871
vioscreen_vite_iu
16.29282427
vioscreen_vitk
237.5004495
vioscreen_water
3382.92363
vioscreen_weight
Not provided
vioscreen_wgrain
0.873205566
vioscreen_whole_grain_servings
0.63975
vioscreen_xylitol
0.04084932
vioscreen_zinc
9.407944938
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
80.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)