American Gut Project; 10317.000026617
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632754
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T22:50:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026617
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
26617
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
19.94
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
04/08/2015
collection month
April
collection season
Spring
collection time
18:10
collection_timestamp
2015-04-08 18:10
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
443.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
4ce19060355546440eab61dff395a67098d7caed4037290acb41b1ccaf738df70fb1d2f25c9bc03c9d945ddca304d78025d88bf499a624594b8a769bbeb2a14c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026617
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
d04920ca7c74295f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.8525753490000001
vioscreen_a_cal
106.35567209999999
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.24112298
vioscreen_addsugar
26.29755993
vioscreen_adsugtot
24.43665989
vioscreen_age
215.0
vioscreen_alanine
1.517945339
vioscreen_alcohol
13.32342546
vioscreen_alcohol_servings
0.8525799999999999
vioscreen_alphacar
1938.775685
vioscreen_alphtoce
14.60846666
vioscreen_alphtoco
13.83350947
vioscreen_arginine
2.1001367859999998
vioscreen_ash
18.03583851
vioscreen_aspartam
0.0
vioscreen_aspartic
3.7328502919999997
vioscreen_avcarb
176.98205269999997
vioscreen_bcodeid
Not provided
vioscreen_betacar
18869.03836
vioscreen_betacryp
345.8830265
vioscreen_betaine
120.49260490000002
vioscreen_betatoco
0.29213697899999996
vioscreen_biochana
0.00830137
vioscreen_bmi
Not provided
vioscreen_caffeine
356.3755565
vioscreen_calcium
true
vioscreen_calcium_avg
1200.0
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.30419
vioscreen_calcium_servings
2.23745
vioscreen_calories
1526.666952
vioscreen_carbo
214.02559930000004
vioscreen_cholest
49.24605629
vioscreen_choline
195.1907748
vioscreen_clac9t11
0.066684932
vioscreen_clat10c12
0.014191783000000001
vioscreen_copper
1.4733149280000002
vioscreen_coumest
0.181013698
vioscreen_cystine
0.406191849
vioscreen_d_cheese
0.253698647
vioscreen_d_milk
0.050493152
vioscreen_d_tot_soym
0.304191798
vioscreen_d_total
0.304191798
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.31389041
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8478081690000001
vioscreen_discfat_oil
35.15095783
vioscreen_discfat_sol
14.99764421
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0033424659999999997
vioscreen_f_citmlb
1.536136826
vioscreen_f_nj_citmlb
1.535506742
vioscreen_f_nj_other
2.112356191
vioscreen_f_nj_total
3.647863268
vioscreen_f_other
2.112356191
vioscreen_f_total
3.6484933510000004
vioscreen_fat
59.84517337
vioscreen_fiber
37.01229399
vioscreen_fibh2o
10.82158872
vioscreen_fibinso
26.26761558
vioscreen_finished
4/7/15
vioscreen_fish_servings
0.24731
vioscreen_fol_deqv
789.2954622999999
vioscreen_fol_nat
419.4930651000001
vioscreen_fol_syn
217.50083480000004
vioscreen_formontn
0.0046575340000000005
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.0
vioscreen_frtsumm
7.3
vioscreen_fructose
32.07890357
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.955917818
vioscreen_g_total
3.035479318
vioscreen_g_whl
2.07953416
vioscreen_galactos
0.190602718
vioscreen_gammtoco
6.423260916
vioscreen_gender
false
vioscreen_genistn
0.26369863
vioscreen_glac
83.95132170000001
vioscreen_gltc
96.66185788
vioscreen_glucose
28.6226295
vioscreen_glutamic
6.7284928829999995
vioscreen_glycine
1.4236986969999998
vioscreen_glycitn
0.038136987000000004
vioscreen_grams
3730.89726
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
1.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
3.6
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.5
vioscreen_hei_score
73.5
vioscreen_hei_sodium
3.2
vioscreen_hei_sol_fat_alc_add_sug
18.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
0.7751780890000001
vioscreen_inositol
0.23068492300000001
vioscreen_iron
18.17016669
vioscreen_isoleuc
1.2426573029999999
vioscreen_isomalt
0.0
vioscreen_joules
6387.573973
vioscreen_juice_servings
0.0012900000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
0.8421917640000001
vioscreen_legumes
0.001452055
vioscreen_leucine
2.175068393
vioscreen_line_gi
498.06429789999993
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
20585.99726
vioscreen_lycopene
7209.1513700000005
vioscreen_lysine
1.527452108
vioscreen_m_egg
0.005232877
vioscreen_m_fish_hi
0.140986299
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.053342464000000006
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.23457535
vioscreen_m_nutsd
1.130328787
vioscreen_m_organ
0.0
vioscreen_m_poult
0.040246574
vioscreen_m_soy
0.008054795
vioscreen_magnes
406.98313360000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.047835844
vioscreen_mangan
6.49865823
vioscreen_mannitol
0.59567127
vioscreen_methhis3
0.8629040859999999
vioscreen_methion
0.5141917189999999
vioscreen_mfa141
0.01139726
vioscreen_mfa161
0.4555343
vioscreen_mfa181
23.08065604
vioscreen_mfa201
0.321095882
vioscreen_mfa221
0.048164383
vioscreen_mfatot
24.00887468
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.82668691
vioscreen_nccglbr
139.3519799
vioscreen_nccglgr
97.48864512
vioscreen_niacin
18.00380592
vioscreen_niacineq
24.97203018
vioscreen_nitrogen
5.760629816000001
vioscreen_non_fried_fish_servings
0.24731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.052849422
vioscreen_oxalic
682.7715325
vioscreen_oxalicm
718.6590752999999
vioscreen_pantothe
5.034794052
vioscreen_pectins
7.119206175
vioscreen_pfa182
13.44821945
vioscreen_pfa183
1.9746030209999998
vioscreen_pfa184
0.006465753
vioscreen_pfa204
0.008712329
vioscreen_pfa205
0.02512329
vioscreen_pfa225
0.008602739
vioscreen_pfa226
0.038082193
vioscreen_pfatot
15.53435493
vioscreen_phenylal
1.475561691
vioscreen_phosphor
790.8108732999999
vioscreen_phytic
661.0262842
vioscreen_pinitol
0.001835616
vioscreen_potass
3878.170205
vioscreen_procdate
10/28/15
vioscreen_proline
1.867479633
vioscreen_protanim
5.406629589
vioscreen_protein
35.05583797
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.65110231
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
491.0
vioscreen_retinol
267.1041096
vioscreen_rgrain
1.230356128
vioscreen_ribofla
1.9138355830000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.93926
vioscreen_satoco
0.014931506
vioscreen_selenium
49.48860766
vioscreen_serine
1.491917775
vioscreen_sfa100
0.37950686100000003
vioscreen_sfa120
0.400547979
vioscreen_sfa140
1.310767354
vioscreen_sfa160
8.660793691
vioscreen_sfa170
0.09260274800000001
vioscreen_sfa180
3.3426851460000004
vioscreen_sfa200
0.220000008
vioscreen_sfa220
0.240876707
vioscreen_sfa40
0.48534240700000003
vioscreen_sfa60
0.274082173
vioscreen_sfa80
0.173232865
vioscreen_sfatot
15.75758642
vioscreen_sodium
2497.039384
vioscreen_sorbitol
1.3961643999999998
vioscreen_srvid
18459.0
vioscreen_starch
61.40478917
vioscreen_started
4/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.91562232
vioscreen_sweet_servings
0.19892
vioscreen_tagatose
0.767013675
vioscreen_tfa161t
0.008082192
vioscreen_tfa181t
0.512767008
vioscreen_tfa182t
0.231890409
vioscreen_tgrain
3.540630017
vioscreen_thiamin
1.3855068259999999
vioscreen_threonin
1.186082145
vioscreen_time
17.0
vioscreen_totaltfa
0.7699177779999999
vioscreen_totcla
0.080986305
vioscreen_totfolat
636.99375
vioscreen_totsugar
95.59731378
vioscreen_tryptoph
0.41832877399999996
vioscreen_tyrosine
1.049013822
vioscreen_user_id
18459.0
vioscreen_v_drkgr
1.560356245
vioscreen_v_orange
0.480273981
vioscreen_v_other
1.507287765
vioscreen_v_potato
0.12413698
vioscreen_v_starcy
0.204383557
vioscreen_v_tomato
0.7769588940000001
vioscreen_v_total
4.653397568
vioscreen_valine
1.535753726
vioscreen_veg5_day
8.7
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.3
vioscreen_visit
1.0
vioscreen_vita_iu
34243.43014
vioscreen_vita_rae
1934.719178
vioscreen_vita_re
3602.330822
vioscreen_vitb12
2.071643903
vioscreen_vitb6
2.200794628
vioscreen_vitc
251.7505779
vioscreen_vitd
2.016109602
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
2.01536999
vioscreen_vitd_iu
80.6443841
vioscreen_vite_iu
20.61115288
vioscreen_vitk
883.4303937999999
vioscreen_water
3399.218493
vioscreen_weight
Not provided
vioscreen_wgrain
2.310246716
vioscreen_whole_grain_servings
2.07953
vioscreen_xylitol
0.087643851
vioscreen_zinc
8.863207004
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)