American Gut Project; 10317.000022505
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632507
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:40:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022505
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22505
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
23.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
01/02/2015
collection month
January
collection season
Winter
collection time
08:49
collection_timestamp
2015-01-02 08:49
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
73.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
8788166e5bee2289affbae918e421c2ec57f4a1b99e4f1652cda8aa1699046e3e33947bfc0fb2269cade32d7a1b3a7dcfad25f8475092ab3cb08962fb976db9e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
47.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022505
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
2a902533a40bb932
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.15739726199999998
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.088192289
vioscreen_addsugar
34.44210991
vioscreen_adsugtot
32.3312607
vioscreen_age
214.0
vioscreen_alanine
2.344520381
vioscreen_alcohol
2.431479425
vioscreen_alcohol_servings
0.1574
vioscreen_alphacar
1889.9148969999999
vioscreen_alphtoce
9.209232529
vioscreen_alphtoco
8.387835777000001
vioscreen_arginine
2.927999585
vioscreen_ash
18.7129642
vioscreen_aspartam
0.0
vioscreen_aspartic
4.990274173
vioscreen_avcarb
198.47491440000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
8529.156164
vioscreen_betacryp
188.13525259999997
vioscreen_betaine
106.30241869999999
vioscreen_betatoco
0.281342472
vioscreen_biochana
0.012493151000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
416.37958050000003
vioscreen_calcium
true
vioscreen_calcium_avg
1000.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.8215899999999999
vioscreen_calcium_servings
2.19921
vioscreen_calories
1427.221404
vioscreen_carbo
230.3658818
vioscreen_cholest
91.22935574
vioscreen_choline
265.2649401
vioscreen_clac9t11
0.041123288
vioscreen_clat10c12
0.008931506
vioscreen_copper
1.5107395119999998
vioscreen_coumest
0.18589040699999998
vioscreen_cystine
0.671917766
vioscreen_d_cheese
0.117260272
vioscreen_d_milk
0.330493164
vioscreen_d_tot_soym
0.821588971
vioscreen_d_total
0.821588971
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.215287676
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.105068593
vioscreen_discfat_oil
14.47898652
vioscreen_discfat_sol
14.16731593
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00509589
vioscreen_f_citmlb
1.057862917
vioscreen_f_nj_citmlb
1.00509585
vioscreen_f_nj_other
1.982547791
vioscreen_f_nj_total
2.9876438089999997
vioscreen_f_other
2.008986214
vioscreen_f_total
3.0668219580000002
vioscreen_fat
40.34286976
vioscreen_fiber
31.88662778
vioscreen_fibh2o
10.13380712
vioscreen_fibinso
21.85613495
vioscreen_finished
12/30/14
vioscreen_fish_servings
1.58231
vioscreen_fol_deqv
396.9817637
vioscreen_fol_nat
371.75903250000005
vioscreen_fol_syn
14.82569831
vioscreen_formontn
0.0035342459999999996
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
4.1
vioscreen_frtsumm
6.1
vioscreen_fructose
35.41484375
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.640602634
vioscreen_g_total
3.449069256
vioscreen_g_whl
2.8084927489999996
vioscreen_galactos
0.6034519979999999
vioscreen_gammtoco
7.000766535
vioscreen_gender
false
vioscreen_genistn
0.127123292
vioscreen_glac
89.79214469
vioscreen_gltc
100.8920163
vioscreen_glucose
32.86216289
vioscreen_glutamic
9.743974742999999
vioscreen_glycine
2.01764401
vioscreen_glycitn
0.007890411
vioscreen_grams
3536.287671
vioscreen_hei2010_dairy
4.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
5.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
9.7
vioscreen_hei_milk
4.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
9.4
vioscreen_hei_score
83.0
vioscreen_hei_sodium
2.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.317945256
vioscreen_inositol
0.145424663
vioscreen_iron
9.413671875
vioscreen_isoleuc
2.112876579
vioscreen_isomalt
0.0
vioscreen_joules
5971.492466
vioscreen_juice_servings
0.15836
vioscreen_lactitol
0.0
vioscreen_lactose
9.957835242
vioscreen_legumes
0.129698631
vioscreen_leucine
3.7073426130000002
vioscreen_line_gi
497.3325342
vioscreen_low_fat_dairy_serving
0.7187100000000001
vioscreen_lutzeax
4425.343836
vioscreen_lycopene
17706.65479
vioscreen_lysine
3.179205239
vioscreen_m_egg
0.141397262
vioscreen_m_fish_hi
0.475726026
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.0
vioscreen_m_meat
0.461589029
vioscreen_m_mpf
1.654191861
vioscreen_m_nutsd
1.158958874
vioscreen_m_organ
0.0
vioscreen_m_poult
0.290958917
vioscreen_m_soy
0.0013150689999999999
vioscreen_magnes
386.2122432
vioscreen_maltitol
0.0
vioscreen_maltose
1.7881917880000002
vioscreen_mangan
6.360822453
vioscreen_mannitol
0.646301353
vioscreen_methhis3
6.271341904
vioscreen_methion
1.0090136379999999
vioscreen_mfa141
0.015780824
vioscreen_mfa161
0.5129863579999999
vioscreen_mfa181
13.52731298
vioscreen_mfa201
0.20928769
vioscreen_mfa221
0.067013696
vioscreen_mfatot
14.538740099999998
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.387835777000001
vioscreen_nccglbr
145.4947025
vioscreen_nccglgr
101.765015
vioscreen_niacin
15.36400631
vioscreen_niacineq
24.42449433
vioscreen_nitrogen
8.572163955
vioscreen_non_fried_fish_servings
1.58231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.249397006
vioscreen_oxalic
246.8592252
vioscreen_oxalicm
247.78598030000003
vioscreen_pantothe
6.189588238
vioscreen_pectins
5.5270955960000006
vioscreen_pfa182
8.434384364
vioscreen_pfa183
1.026876288
vioscreen_pfa184
0.016109589
vioscreen_pfa204
0.040246574
vioscreen_pfa205
0.057616445
vioscreen_pfa225
0.023561645
vioscreen_pfa226
0.12564382699999999
vioscreen_pfatot
9.760629147000001
vioscreen_phenylal
2.209999732
vioscreen_phosphor
1073.694007
vioscreen_phytic
779.3125856
vioscreen_pinitol
0.000684932
vioscreen_potass
4103.790411
vioscreen_procdate
10/28/15
vioscreen_proline
3.004629642
vioscreen_protanim
23.35854827
vioscreen_protein
52.40005886
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.03636023
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
663.0
vioscreen_retinol
142.38752140000003
vioscreen_rgrain
0.674082215
vioscreen_ribofla
1.7821645240000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.42795
vioscreen_satoco
0.0
vioscreen_selenium
75.02990154
vioscreen_serine
2.352191915
vioscreen_sfa100
0.225178068
vioscreen_sfa120
0.37846575200000004
vioscreen_sfa140
1.040054865
vioscreen_sfa160
6.732877381000001
vioscreen_sfa170
0.019616439
vioscreen_sfa180
2.999507037
vioscreen_sfa200
0.115780828
vioscreen_sfa220
0.190383535
vioscreen_sfa40
0.274383566
vioscreen_sfa60
0.139698624
vioscreen_sfa80
0.112986306
vioscreen_sfatot
12.51750589
vioscreen_sodium
2537.2679789999997
vioscreen_sorbitol
1.809425333
vioscreen_srvid
16688.0
vioscreen_starch
58.47860124
vioscreen_started
12/30/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.42547624
vioscreen_sweet_servings
0.44259
vioscreen_tagatose
4.191123649
vioscreen_tfa161t
0.040465752
vioscreen_tfa181t
0.6953698559999999
vioscreen_tfa182t
0.22980821199999998
vioscreen_tgrain
3.377616652
vioscreen_thiamin
1.17550701
vioscreen_threonin
1.882493278
vioscreen_time
33.0
vioscreen_totaltfa
1.0543561540000002
vioscreen_totcla
0.050465748
vioscreen_totfolat
386.5847603
vioscreen_totsugar
119.2296126
vioscreen_tryptoph
0.543534203
vioscreen_tyrosine
1.64117833
vioscreen_user_id
16688.0
vioscreen_v_drkgr
0.50345204
vioscreen_v_orange
0.39852060799999994
vioscreen_v_other
1.488301484
vioscreen_v_potato
0.184219172
vioscreen_v_starcy
0.164712336
vioscreen_v_tomato
0.8730684459999999
vioscreen_v_total
3.611780956
vioscreen_valine
2.5818907859999998
vioscreen_veg5_day
8.3
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.2
vioscreen_visit
1.0
vioscreen_vita_iu
16422.19726
vioscreen_vita_rae
939.7370719
vioscreen_vita_re
1737.0857879999999
vioscreen_vitb12
2.2180548680000003
vioscreen_vitb6
2.004492856
vioscreen_vitc
207.2512414
vioscreen_vitd
3.591041377
vioscreen_vitd2
0.0
vioscreen_vitd3
3.591041377
vioscreen_vitd_iu
143.6416551
vioscreen_vite_iu
12.47021886
vioscreen_vitk
176.6998074
vioscreen_water
3202.675
vioscreen_weight
Not provided
vioscreen_wgrain
2.703534354
vioscreen_whole_grain_servings
2.80849
vioscreen_xylitol
0.053506850999999994
vioscreen_zinc
8.139150123
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily