American Gut Project; 10317.000027630
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633203
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027630
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
20s
age years
27.0
age_corrected
27.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27630
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1988.0
bmi
20.64
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Self-diagnosed
collection date
2015-05-20
collection month
May
collection season
Spring
collection time
11:00
collection_timestamp
2015-05-20 11:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by an alternative medicine practitioner
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
2.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Never
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Never
host common name
human
host subject id
3f6674dddd3dfe00acf3159aab1a1683b2819bca57156ece43690a19c3fbf0a67aeb7dd563ba9ec14cb3a4a67370da41553199557799b8b65c6f1fa0822fc032
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-124.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027630
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
4c7bb012316b4118
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.752027371
vioscreen_addsugar
13.946602100000002
vioscreen_adsugtot
12.28413554
vioscreen_age
215.0
vioscreen_alanine
7.055562393
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
4309.671918
vioscreen_alphtoce
17.66677012
vioscreen_alphtoco
16.8926303
vioscreen_arginine
7.817535317000001
vioscreen_ash
25.88709867
vioscreen_aspartam
0.0
vioscreen_aspartic
12.04531384
vioscreen_avcarb
89.12584546
vioscreen_bcodeid
Not provided
vioscreen_betacar
34086.876710000004
vioscreen_betacryp
83.01665240000001
vioscreen_betaine
170.4635916
vioscreen_betatoco
0.198082179
vioscreen_biochana
0.008767123
vioscreen_bmi
Not provided
vioscreen_caffeine
131.8294842
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.5684899999999999
vioscreen_calcium_servings
2.81406
vioscreen_calories
1869.9445210000001
vioscreen_carbo
113.15471959999999
vioscreen_cholest
719.3889555
vioscreen_choline
723.5559932
vioscreen_clac9t11
0.187698636
vioscreen_clat10c12
0.045205485
vioscreen_copper
5.695260327000001
vioscreen_coumest
0.010273973
vioscreen_cystine
1.585753391
vioscreen_d_cheese
0.070082192
vioscreen_d_milk
0.498219195
vioscreen_d_tot_soym
0.568493151
vioscreen_d_total
0.568493151
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.180328766
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.542164424
vioscreen_discfat_oil
30.13926316
vioscreen_discfat_sol
47.87285424
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.457287681
vioscreen_f_nj_citmlb
0.442575366
vioscreen_f_nj_other
0.183205487
vioscreen_f_nj_total
0.625808256
vioscreen_f_other
0.183205487
vioscreen_f_total
0.640493147
vioscreen_fat
105.7911922
vioscreen_fiber
24.02896244
vioscreen_fibh2o
4.727808286
vioscreen_fibinso
19.2075891
vioscreen_finished
5/17/15
vioscreen_fish_servings
5.61788
vioscreen_fol_deqv
704.9411815000001
vioscreen_fol_nat
661.2032962000001
vioscreen_fol_syn
25.71054955
vioscreen_formontn
0.00060274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.3
vioscreen_fructose
10.84572654
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.02213695
vioscreen_g_total
1.02213695
vioscreen_g_whl
0.0
vioscreen_galactos
0.188356164
vioscreen_gammtoco
6.8073964579999995
vioscreen_gender
false
vioscreen_genistn
0.300520555
vioscreen_glac
29.13643782
vioscreen_gltc
33.77622271
vioscreen_glucose
11.69934316
vioscreen_glutamic
19.09852044
vioscreen_glycine
6.503864111
vioscreen_glycitn
0.050931507
vioscreen_grams
3378.1273969999997
vioscreen_hei2010_dairy
2.3
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
2.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
59.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.2
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.1
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.3
vioscreen_hei_non_juice_frt
4.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.5912875239999997
vioscreen_inositol
0.11120548
vioscreen_iron
20.04471452
vioscreen_isoleuc
5.73583583
vioscreen_isomalt
0.0
vioscreen_joules
7823.850684999999
vioscreen_juice_servings
0.029419999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
6.165260461
vioscreen_legumes
0.050876711
vioscreen_leucine
9.631479425
vioscreen_line_gi
206.0268408
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
38539.32877
vioscreen_lycopene
6769.641095999999
vioscreen_lysine
9.797014127
vioscreen_m_egg
0.602356166
vioscreen_m_fish_hi
2.111260401
vioscreen_m_fish_lo
1.0901918179999999
vioscreen_m_frank
0.158301367
vioscreen_m_meat
4.317533978999999
vioscreen_m_mpf
12.09717733
vioscreen_m_nutsd
0.31005479
vioscreen_m_organ
2.0529315269999997
vioscreen_m_poult
2.367123288
vioscreen_m_soy
0.002876712
vioscreen_magnes
408.2191353
vioscreen_maltitol
0.0
vioscreen_maltose
1.7164933709999999
vioscreen_mangan
4.687042153
vioscreen_mannitol
0.456027347
vioscreen_methhis3
36.75114779999999
vioscreen_methion
3.071479358
vioscreen_mfa141
0.176986297
vioscreen_mfa161
2.2659450580000002
vioscreen_mfa181
40.31402772
vioscreen_mfa201
0.6819452159999999
vioscreen_mfa221
0.399506869
vioscreen_mfatot
44.18287671
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.8926303
vioscreen_nccglbr
69.03624251
vioscreen_nccglgr
48.28945313
vioscreen_niacin
35.20882117
vioscreen_niacineq
57.05870612
vioscreen_nitrogen
19.90487746
vioscreen_non_fried_fish_servings
5.61788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.1807677389999998
vioscreen_oxalic
1200.632877
vioscreen_oxalicm
1273.6704619999998
vioscreen_pantothe
9.377013324
vioscreen_pectins
5.789314667
vioscreen_pfa182
13.03040989
vioscreen_pfa183
2.084685192
vioscreen_pfa184
0.083287675
vioscreen_pfa204
0.469780825
vioscreen_pfa205
0.283753403
vioscreen_pfa225
0.128520548
vioscreen_pfa226
0.602547967
vioscreen_pfatot
17.17972362
vioscreen_phenylal
5.263424724
vioscreen_phosphor
1522.532705
vioscreen_phytic
210.2813142
vioscreen_pinitol
0.0062191780000000006
vioscreen_potass
4329.078082
vioscreen_procdate
10/28/15
vioscreen_proline
5.828602579
vioscreen_protanim
104.0732663
vioscreen_protein
124.0994756
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.0276715
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
441.0
vioscreen_retinol
4142.329110000001
vioscreen_rgrain
0.83706849
vioscreen_ribofla
3.344958998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.44282
vioscreen_satoco
0.0
vioscreen_selenium
158.5732342
vioscreen_serine
5.233040922
vioscreen_sfa100
0.569205506
vioscreen_sfa120
0.628821971
vioscreen_sfa140
2.727945239
vioscreen_sfa160
19.29353462
vioscreen_sfa170
0.28750685600000003
vioscreen_sfa180
8.614245773
vioscreen_sfa200
0.185315046
vioscreen_sfa220
0.12317809
vioscreen_sfa40
0.668356198
vioscreen_sfa60
0.441424644
vioscreen_sfa80
0.296219207
vioscreen_sfatot
34.14171929
vioscreen_sodium
5076.293836
vioscreen_sorbitol
0.13400001
vioscreen_srvid
18718.0
vioscreen_starch
31.25153575
vioscreen_started
5/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.17991893
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.007178082
vioscreen_tfa161t
0.091589031
vioscreen_tfa181t
2.552849255
vioscreen_tfa182t
0.363068505
vioscreen_tgrain
0.83706849
vioscreen_thiamin
1.167424785
vioscreen_threonin
5.261041176
vioscreen_time
36.0
vioscreen_totaltfa
3.071068333
vioscreen_totcla
0.23386303600000002
vioscreen_totfolat
686.9138699
vioscreen_totsugar
43.53317637
vioscreen_tryptoph
1.3113150820000001
vioscreen_tyrosine
4.294246977
vioscreen_user_id
18718.0
vioscreen_v_drkgr
2.269753485
vioscreen_v_orange
1.087452008
vioscreen_v_other
1.177643742
vioscreen_v_potato
0.286082208
vioscreen_v_starcy
0.053835615
vioscreen_v_tomato
0.39531509200000003
vioscreen_v_total
5.27041116
vioscreen_valine
6.374849502000001
vioscreen_veg5_day
8.2
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
10.5
vioscreen_visit
1.0
vioscreen_vita_iu
74278.60822000001
vioscreen_vita_rae
7165.932192
vioscreen_vita_re
10189.53425
vioscreen_vitb12
32.63772474
vioscreen_vitb6
2.9456706839999995
vioscreen_vitc
140.9092573
vioscreen_vitd
13.27271244
vioscreen_vitd2
0.001589041
vioscreen_vitd3
13.27112452
vioscreen_vitd_iu
530.9084974
vioscreen_vite_iu
25.1921875
vioscreen_vitk
1585.904452
vioscreen_water
3038.025685
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.045972599
vioscreen_zinc
16.75104345
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never