American Gut Project; 10317.000028445
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633599
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:29:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028445
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28445
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
26.84
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
07/02/2015
collection month
July
collection season
Summer
collection time
17:45
collection_timestamp
2015-07-02 17:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
36.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
156.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2d5063c7408a5f9994c56a72255205b2b3ccd203f57327650ca52b12348cc594d338605330efb7bc496dede1fbb908dbd61b5514dee69f47364fb7a073529ab1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-4.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Not provided
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028445
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
ef37f81deb9c9560
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.492328633
vioscreen_a_cal
181.388506
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.662712202
vioscreen_addsugar
13.47882197
vioscreen_adsugtot
12.34221961
vioscreen_age
215.0
vioscreen_alanine
2.532301477
vioscreen_alcohol
22.92350706
vioscreen_alcohol_servings
1.49233
vioscreen_alphacar
2868.174658
vioscreen_alphtoce
11.32320607
vioscreen_alphtoco
10.33969994
vioscreen_arginine
3.0881096830000003
vioscreen_ash
15.13660504
vioscreen_aspartam
23.190766800000002
vioscreen_aspartic
5.238821703999999
vioscreen_avcarb
108.01011340000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
11720.9274
vioscreen_betacryp
91.00070634
vioscreen_betaine
49.58693814
vioscreen_betatoco
0.259808245
vioscreen_biochana
0.011479452
vioscreen_bmi
Not provided
vioscreen_caffeine
154.3934503
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.07005
vioscreen_calcium_servings
2.09389
vioscreen_calories
1452.701199
vioscreen_carbo
128.08455690000002
vioscreen_cholest
181.0811216
vioscreen_choline
284.29171660000003
vioscreen_clac9t11
0.10065752800000001
vioscreen_clat10c12
0.020986305
vioscreen_copper
1.056356352
vioscreen_coumest
0.054383562999999996
vioscreen_cystine
0.592383565
vioscreen_d_cheese
0.175616434
vioscreen_d_milk
0.8921644240000001
vioscreen_d_tot_soym
1.070054815
vioscreen_d_total
1.070054815
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.06638356599999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.598274126
vioscreen_discfat_oil
30.00692958
vioscreen_discfat_sol
27.63737158
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001342466
vioscreen_f_citmlb
0.40493155700000005
vioscreen_f_nj_citmlb
0.398630179
vioscreen_f_nj_other
0.899945152
vioscreen_f_nj_total
1.298575289
vioscreen_f_other
0.899945152
vioscreen_f_total
1.304904133
vioscreen_fat
68.87830158
vioscreen_fiber
20.07391776
vioscreen_fibh2o
4.385944523
vioscreen_fibinso
15.77016535
vioscreen_finished
7/2/15
vioscreen_fish_servings
3.61635
vioscreen_fol_deqv
315.23206339999996
vioscreen_fol_nat
270.0953981
vioscreen_fol_syn
26.52544949
vioscreen_formontn
0.0027397259999999996
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
14.81384043
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.0528219140000001
vioscreen_g_total
1.230767153
vioscreen_g_whl
0.177945197
vioscreen_galactos
0.144904118
vioscreen_gammtoco
8.630274775
vioscreen_gender
false
vioscreen_genistn
0.08517807699999999
vioscreen_glac
41.69709707
vioscreen_gltc
48.02879388
vioscreen_glucose
14.62972897
vioscreen_glutamic
9.264658471
vioscreen_glycine
2.133424858
vioscreen_glycitn
0.010684932
vioscreen_grams
2209.711986
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
17.0
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.4
vioscreen_hei_score
64.7
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
11.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.4
vioscreen_height
Not provided
vioscreen_histidin
1.394493124
vioscreen_inositol
0.206657535
vioscreen_iron
8.318137976000001
vioscreen_isoleuc
2.2667396859999998
vioscreen_isomalt
0.0
vioscreen_joules
6078.102054999999
vioscreen_juice_servings
0.012629999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
11.54326038
vioscreen_legumes
0.011945205
vioscreen_leucine
3.92158872
vioscreen_line_gi
287.8647046
vioscreen_low_fat_dairy_serving
0.51742
vioscreen_lutzeax
8624.476712
vioscreen_lycopene
2732.987671
vioscreen_lysine
3.701370532
vioscreen_m_egg
0.332164378
vioscreen_m_fish_hi
0.919671213
vioscreen_m_fish_lo
1.141123314
vioscreen_m_frank
0.094356171
vioscreen_m_meat
0.539725986
vioscreen_m_mpf
3.062410705
vioscreen_m_nutsd
1.0937534279999999
vioscreen_m_organ
0.0
vioscreen_m_poult
0.36758903600000004
vioscreen_m_soy
0.00139726
vioscreen_magnes
296.5342252
vioscreen_maltitol
0.0
vioscreen_maltose
1.096164317
vioscreen_mangan
3.5290416980000003
vioscreen_mannitol
0.31276713300000003
vioscreen_methhis3
10.13594553
vioscreen_methion
1.193561544
vioscreen_mfa141
0.075205482
vioscreen_mfa161
0.9919176909999999
vioscreen_mfa181
26.26397421
vioscreen_mfa201
0.398685027
vioscreen_mfa221
0.127123281
vioscreen_mfatot
27.98449272
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.33969994
vioscreen_nccglbr
80.75341931
vioscreen_nccglgr
56.48613014
vioscreen_niacin
14.84323496
vioscreen_niacineq
24.66090272
vioscreen_nitrogen
8.364465165
vioscreen_non_fried_fish_servings
3.18885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.988712008
vioscreen_oxalic
292.8425514
vioscreen_oxalicm
302.7272046
vioscreen_pantothe
3.862492977
vioscreen_pectins
4.42945172
vioscreen_pfa182
12.86539758
vioscreen_pfa183
1.5430408219999998
vioscreen_pfa184
0.031150685
vioscreen_pfa204
0.078684935
vioscreen_pfa205
0.117260272
vioscreen_pfa225
0.043205478
vioscreen_pfa226
0.254630144
vioscreen_pfatot
15.02594579
vioscreen_phenylal
2.223123127
vioscreen_phosphor
941.8268836000001
vioscreen_phytic
358.6401541
vioscreen_pinitol
0.000739726
vioscreen_potass
3051.255137
vioscreen_procdate
10/28/15
vioscreen_proline
2.8040823319999997
vioscreen_protanim
33.503125
vioscreen_protein
51.56679688
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.06506849
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
334.0
vioscreen_retinol
289.9322132
vioscreen_rgrain
0.990657441
vioscreen_ribofla
1.33673982
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.75463
vioscreen_satoco
0.0
vioscreen_selenium
69.96035959
vioscreen_serine
2.401287925
vioscreen_sfa100
0.46490415799999996
vioscreen_sfa120
0.6886575359999999
vioscreen_sfa140
1.811178129
vioscreen_sfa160
11.39586499
vioscreen_sfa170
0.11610960199999999
vioscreen_sfa180
4.526466182
vioscreen_sfa200
0.20147943399999999
vioscreen_sfa220
0.23057535199999998
vioscreen_sfa40
0.552411014
vioscreen_sfa60
0.329999992
vioscreen_sfa80
0.226904088
vioscreen_sfatot
20.79863148
vioscreen_sodium
2531.6501710000002
vioscreen_sorbitol
0.321534248
vioscreen_srvid
20042.0
vioscreen_starch
32.4767043
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.85997298
vioscreen_sweet_servings
0.05842000000000001
vioscreen_tagatose
0.293616433
vioscreen_tfa161t
0.033424657
vioscreen_tfa181t
1.108712309
vioscreen_tfa182t
0.212821919
vioscreen_tgrain
1.232383414
vioscreen_thiamin
0.830328871
vioscreen_threonin
2.094794286
vioscreen_time
36.0
vioscreen_totaltfa
1.3650958340000001
vioscreen_totcla
0.121698625
vioscreen_totfolat
296.6208262
vioscreen_totsugar
59.52438998
vioscreen_tryptoph
0.589397315
vioscreen_tyrosine
1.804054574
vioscreen_user_id
20042.0
vioscreen_v_drkgr
0.538657536
vioscreen_v_orange
0.578657553
vioscreen_v_other
1.232822032
vioscreen_v_potato
0.32813695600000004
vioscreen_v_starcy
0.306356164
vioscreen_v_tomato
0.418054784
vioscreen_v_total
3.402657788
vioscreen_valine
2.622520635
vioscreen_veg5_day
6.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.8
vioscreen_visit
1.0
vioscreen_vita_iu
22966.86712
vioscreen_vita_rae
1389.9749140000001
vioscreen_vita_re
2490.0174660000002
vioscreen_vitb12
3.6412875239999996
vioscreen_vitb6
1.708794414
vioscreen_vitc
125.9792487
vioscreen_vitd
8.409397742000001
vioscreen_vitd2
0.001068493
vioscreen_vitd3
8.408356967000001
vioscreen_vitd_iu
336.3759097
vioscreen_vite_iu
15.4225198
vioscreen_vitk
352.87855310000003
vioscreen_water
1936.526541
vioscreen_weight
Not provided
vioscreen_wgrain
0.24172601600000002
vioscreen_whole_grain_servings
0.17795
vioscreen_xylitol
0.055178081
vioscreen_zinc
6.822439533
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)