American Gut Project; 10317.000027910
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633917
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027910
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27910
antibiotic_history
Year
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
29.26
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
19:08
collection_timestamp
2015-07-27 19:08
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
99.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
707d2d1eab581e75d6ad60ce5066a63e392d6665a87cfe16166d986eb46dea00ebd19b752f671a0276fdc3e3c9004720e1dee16cb0613d0cbba1cd25d161cc17
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
47.8
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027910
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Not provided
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
eefabb5486180820
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.182958901
vioscreen_a_cal
19.35980843
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.104794604
vioscreen_addsugar
5.2253428
vioscreen_adsugtot
4.83120552
vioscreen_age
215.0
vioscreen_alanine
2.6987400000000004
vioscreen_alcohol
2.657835576
vioscreen_alcohol_servings
0.18295999999999998
vioscreen_alphacar
473.65860449999997
vioscreen_alphtoce
6.373698363
vioscreen_alphtoco
5.5403842039999995
vioscreen_arginine
3.039753451
vioscreen_ash
12.00822052
vioscreen_aspartam
0.0
vioscreen_aspartic
5.039724355
vioscreen_avcarb
51.52741866
vioscreen_bcodeid
Not provided
vioscreen_betacar
2200.2837329999998
vioscreen_betacryp
60.53054902
vioscreen_betaine
34.62169307
vioscreen_betatoco
0.147397269
vioscreen_biochana
0.006849315
vioscreen_bmi
Not provided
vioscreen_caffeine
256.974786
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.43225
vioscreen_calcium_servings
1.26378
vioscreen_calories
926.4428082000001
vioscreen_carbo
61.65659782
vioscreen_cholest
809.7075342
vioscreen_choline
701.0868151000001
vioscreen_clac9t11
0.045945207
vioscreen_clat10c12
0.00958904
vioscreen_copper
0.517013717
vioscreen_coumest
0.19279452800000002
vioscreen_cystine
0.912191814
vioscreen_d_cheese
0.173260279
vioscreen_d_milk
0.25898631899999996
vioscreen_d_tot_soym
0.432246545
vioscreen_d_total
0.432246545
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.24309589999999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.849890471
vioscreen_discfat_oil
8.962931427000001
vioscreen_discfat_sol
28.56181239
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.25594520000000004
vioscreen_f_nj_citmlb
0.254273966
vioscreen_f_nj_other
0.21331507
vioscreen_f_nj_total
0.467589036
vioscreen_f_other
0.21331507
vioscreen_f_total
0.469260312
vioscreen_fat
51.86046661
vioscreen_fiber
10.12649427
vioscreen_fibh2o
4.658465994
vioscreen_fibinso
5.4496993389999995
vioscreen_finished
7/25/15
vioscreen_fish_servings
0.8023100000000001
vioscreen_fol_deqv
271.5606378
vioscreen_fol_nat
190.1851027
vioscreen_fol_syn
47.83348138
vioscreen_formontn
0.001808219
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.054770000000000006
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
4.596602766
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.372383682
vioscreen_g_total
1.7057259340000002
vioscreen_g_whl
0.33336986399999996
vioscreen_galactos
0.11005481
vioscreen_gammtoco
7.565451092000001
vioscreen_gender
false
vioscreen_genistn
0.090767116
vioscreen_glac
21.41356352
vioscreen_gltc
23.98098512
vioscreen_glucose
6.949424096
vioscreen_glutamic
8.477781865
vioscreen_glycine
2.0705484469999997
vioscreen_glycitn
0.001041096
vioscreen_grams
2204.36661
vioscreen_hei2010_dairy
3.6
vioscreen_hei2010_empty_calories
13.1
vioscreen_hei2010_fatty_acids
4.8
vioscreen_hei2010_fruit
3.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.4
vioscreen_hei_drk_g_org_veg_leg
4.0
vioscreen_hei_fruit
3.2
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.1
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
12.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
1.341452152
vioscreen_inositol
0.028219176000000002
vioscreen_iron
6.899807363
vioscreen_isoleuc
2.50043845
vioscreen_isomalt
0.0
vioscreen_joules
3876.237329
vioscreen_juice_servings
0.0033399999999999997
vioscreen_lactitol
0.0
vioscreen_lactose
2.9779179819999997
vioscreen_legumes
0.077671234
vioscreen_leucine
4.17087603
vioscreen_line_gi
114.8970783
vioscreen_low_fat_dairy_serving
0.00518
vioscreen_lutzeax
1669.919349
vioscreen_lycopene
3027.728082
vioscreen_lysine
3.5433971669999997
vioscreen_m_egg
4.02156163
vioscreen_m_fish_hi
0.345890411
vioscreen_m_fish_lo
0.11126027599999999
vioscreen_m_frank
0.037835615
vioscreen_m_meat
0.9782190609999999
vioscreen_m_mpf
1.604739673
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.131534242
vioscreen_m_soy
0.000109589
vioscreen_magnes
142.5110659
vioscreen_maltitol
0.0
vioscreen_maltose
0.923643682
vioscreen_mangan
1.447917949
vioscreen_mannitol
0.120246584
vioscreen_methhis3
6.301369863
vioscreen_methion
1.362109459
vioscreen_mfa141
0.063835614
vioscreen_mfa161
0.9857533909999999
vioscreen_mfa181
19.29525899
vioscreen_mfa201
0.203863045
vioscreen_mfa221
0.071178086
vioscreen_mfatot
20.70490555
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.5403842039999995
vioscreen_nccglbr
36.85941781
vioscreen_nccglgr
25.78808594
vioscreen_niacin
8.565697907999999
vioscreen_niacineq
18.27704276
vioscreen_nitrogen
8.427342412
vioscreen_non_fried_fish_servings
0.8023100000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.8152601270000001
vioscreen_oxalic
87.58422517
vioscreen_oxalicm
90.68618365
vioscreen_pantothe
5.617808219
vioscreen_pectins
1.303972302
vioscreen_pfa182
7.82106967
vioscreen_pfa183
0.549479404
vioscreen_pfa184
0.014739728
vioscreen_pfa204
0.325123241
vioscreen_pfa205
0.059068492
vioscreen_pfa225
0.02052055
vioscreen_pfa226
0.171589044
vioscreen_pfatot
8.994383427999999
vioscreen_phenylal
2.491068299
vioscreen_phosphor
770.4523116
vioscreen_phytic
250.60085619999998
vioscreen_pinitol
0.000191781
vioscreen_potass
1500.230651
vioscreen_procdate
10/28/15
vioscreen_proline
2.631698483
vioscreen_protanim
41.8428537
vioscreen_protein
52.09239084
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
10.24964549
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
263.0
vioscreen_retinol
435.23458899999997
vioscreen_rgrain
1.491534173
vioscreen_ribofla
1.967314921
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.99055
vioscreen_satoco
0.0
vioscreen_selenium
97.42977312
vioscreen_serine
3.0605746330000003
vioscreen_sfa100
0.174876686
vioscreen_sfa120
0.283095875
vioscreen_sfa140
0.8583287909999999
vioscreen_sfa160
9.95945259
vioscreen_sfa170
0.09273973199999999
vioscreen_sfa180
4.074657869
vioscreen_sfa200
0.092410947
vioscreen_sfa220
0.129150673
vioscreen_sfa40
0.21035614
vioscreen_sfa60
0.110383564
vioscreen_sfa80
0.08682192400000001
vioscreen_sfatot
16.22651702
vioscreen_sodium
1859.7039379999999
vioscreen_sorbitol
0.261342443
vioscreen_srvid
20231.0
vioscreen_starch
25.84895923
vioscreen_started
7/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
6.418410879
vioscreen_sweet_servings
0.10959
vioscreen_tagatose
0.067972607
vioscreen_tfa161t
0.013808218999999998
vioscreen_tfa181t
1.7344382090000001
vioscreen_tfa182t
0.17701367899999998
vioscreen_tgrain
1.890712121
vioscreen_thiamin
0.689452038
vioscreen_threonin
2.207780728
vioscreen_time
38.0
vioscreen_totaltfa
1.9368488469999998
vioscreen_totcla
0.056602734
vioscreen_totfolat
238.01853599999998
vioscreen_totsugar
22.08089951
vioscreen_tryptoph
0.5826574870000001
vioscreen_tyrosine
1.915150598
vioscreen_user_id
20231.0
vioscreen_v_drkgr
0.124958895
vioscreen_v_orange
0.096602735
vioscreen_v_other
0.39430140700000005
vioscreen_v_potato
0.050273974000000006
vioscreen_v_starcy
0.018164383
vioscreen_v_tomato
0.273616425
vioscreen_v_total
0.957999953
vioscreen_valine
2.831260033
vioscreen_veg5_day
1.4
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.9
vioscreen_visit
1.0
vioscreen_vita_iu
5563.335615999999
vioscreen_vita_rae
640.8490154
vioscreen_vita_re
846.4648116000001
vioscreen_vitb12
3.9350137789999997
vioscreen_vitb6
0.8468218240000001
vioscreen_vitc
34.26819884
vioscreen_vitd
6.892711901
vioscreen_vitd2
0.0007123289999999999
vioscreen_vitd3
6.892026969
vioscreen_vitd_iu
275.70847599999996
vioscreen_vite_iu
8.241588185
vioscreen_vitk
55.25370826
vioscreen_water
2056.462329
vioscreen_weight
Not provided
vioscreen_wgrain
0.399178116
vioscreen_whole_grain_servings
0.33337
vioscreen_xylitol
0.009835616
vioscreen_zinc
6.092877783
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)