10317.000026535; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633166
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026535
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26535
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1972.0
bmi
38.74
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-28
collection month
May
collection season
Spring
collection time
08:18
collection_timestamp
2015-05-28 08:18
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
27.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
bedc6b33f35818322607eecbe3a53627d535ee3e48a267060b36e4f1643257e9f72176f2e5591d12a5912913397b2ceffbb07e1f8295e62ebaf6135e9466ee3f
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-74.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Yes
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026535
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
8d79573ee18f401e
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.079260275
vioscreen_a_cal
9.569397474
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.639232897
vioscreen_addsugar
12.20920511
vioscreen_adsugtot
11.17868485
vioscreen_age
215.0
vioscreen_alanine
1.00709588
vioscreen_alcohol
1.203917788
vioscreen_alcohol_servings
0.07926
vioscreen_alphacar
767.2720889999999
vioscreen_alphtoce
6.889013672000001
vioscreen_alphtoco
6.4177527020000005
vioscreen_arginine
1.3558631369999998
vioscreen_ash
8.901999278
vioscreen_aspartam
0.0
vioscreen_aspartic
2.152959118
vioscreen_avcarb
78.53697025
vioscreen_bcodeid
Not provided
vioscreen_betacar
7046.443836
vioscreen_betacryp
33.87827483
vioscreen_betaine
150.2168022
vioscreen_betatoco
0.27421912600000004
vioscreen_biochana
0.001616438
vioscreen_bmi
Not provided
vioscreen_caffeine
46.19599743
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.32189
vioscreen_calcium_servings
1.2566899999999999
vioscreen_calories
757.4516267000001
vioscreen_carbo
92.69750642
vioscreen_cholest
30.5866037
vioscreen_choline
90.99699272
vioscreen_clac9t11
0.010767121999999999
vioscreen_clat10c12
0.0017260270000000002
vioscreen_copper
0.820712322
vioscreen_coumest
0.0033424659999999997
vioscreen_cystine
0.34183560700000004
vioscreen_d_cheese
0.239013714
vioscreen_d_milk
0.044547946
vioscreen_d_tot_soym
0.321890405
vioscreen_d_total
0.321890405
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
1.9461648180000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.867589078
vioscreen_discfat_oil
22.48808326
vioscreen_discfat_sol
6.594438945
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000520548
vioscreen_f_citmlb
0.154082196
vioscreen_f_nj_citmlb
0.153452061
vioscreen_f_nj_other
0.39361639200000004
vioscreen_f_nj_total
0.5470684729999999
vioscreen_f_other
0.39361639200000004
vioscreen_f_total
0.547698598
vioscreen_fat
33.71898812
vioscreen_fiber
14.15295912
vioscreen_fibh2o
2.956492468
vioscreen_fibinso
11.20183473
vioscreen_finished
4/22/15
vioscreen_fish_servings
0.23192
vioscreen_fol_deqv
199.3014983
vioscreen_fol_nat
172.877515
vioscreen_fol_syn
15.53479506
vioscreen_formontn
0.000383562
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.1
vioscreen_fructose
9.142629629
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
1.0142739490000001
vioscreen_g_total
2.9540269830000003
vioscreen_g_whl
1.939753284
vioscreen_galactos
0.11454794900000001
vioscreen_gammtoco
3.5200275580000002
vioscreen_gender
false
vioscreen_genistn
2.509424831
vioscreen_glac
37.33674283
vioscreen_gltc
42.39342359
vioscreen_glucose
8.62043758
vioscreen_glutamic
5.50953319
vioscreen_glycine
0.937178269
vioscreen_glycitn
0.42049313899999996
vioscreen_grams
2209.703425
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.5
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.2
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.7
vioscreen_hei_score
78.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
0.583561644
vioscreen_inositol
0.054821918
vioscreen_iron
5.61605442
vioscreen_isoleuc
1.007150728
vioscreen_isomalt
0.0
vioscreen_joules
3169.17637
vioscreen_juice_servings
0.00126
vioscreen_lactitol
0.0
vioscreen_lactose
1.3684657269999998
vioscreen_legumes
0.028931507999999998
vioscreen_leucine
1.7199451190000001
vioscreen_line_gi
177.4217145
vioscreen_low_fat_dairy_serving
0.03833
vioscreen_lutzeax
5625.362329
vioscreen_lycopene
3729.1893840000002
vioscreen_lysine
1.238192038
vioscreen_m_egg
0.065863016
vioscreen_m_fish_hi
0.033863013
vioscreen_m_fish_lo
0.09830137300000001
vioscreen_m_frank
0.028712328
vioscreen_m_meat
0.004356164
vioscreen_m_mpf
0.304986301
vioscreen_m_nutsd
0.333643832
vioscreen_m_organ
0.0
vioscreen_m_poult
0.13975342
vioscreen_m_soy
0.549671204
vioscreen_magnes
174.8064212
vioscreen_maltitol
0.0
vioscreen_maltose
1.8552052119999998
vioscreen_mangan
3.351260167
vioscreen_mannitol
0.27523287399999996
vioscreen_methhis3
1.1526301140000001
vioscreen_methion
0.43183560299999996
vioscreen_mfa141
0.020712333
vioscreen_mfa161
0.39534251600000003
vioscreen_mfa181
17.78273892
vioscreen_mfa201
0.120958908
vioscreen_mfa221
0.006
vioscreen_mfatot
18.40139796
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
6.4177527020000005
vioscreen_nccglbr
61.99398009
vioscreen_nccglgr
43.36185788
vioscreen_niacin
6.705617241000001
vioscreen_niacineq
11.82326225
vioscreen_nitrogen
4.249507371
vioscreen_non_fried_fish_servings
0.23192
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.5463013529999999
vioscreen_oxalic
268.1818707
vioscreen_oxalicm
258.58576630000005
vioscreen_pantothe
1.6405755030000002
vioscreen_pectins
2.057041283
vioscreen_pfa182
5.03161688
vioscreen_pfa183
0.527589061
vioscreen_pfa184
0.000876712
vioscreen_pfa204
0.015616437
vioscreen_pfa205
0.004328767
vioscreen_pfa225
0.003178082
vioscreen_pfa226
0.01049315
vioscreen_pfatot
5.615451092000001
vioscreen_phenylal
1.1137537290000001
vioscreen_phosphor
451.8463613
vioscreen_phytic
475.5660103
vioscreen_pinitol
0.021260273
vioscreen_potass
1305.694349
vioscreen_procdate
10/28/15
vioscreen_proline
1.6635342530000001
vioscreen_protanim
6.564794922000001
vioscreen_protein
25.73416631
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.16879682
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
465.0
vioscreen_retinol
46.32514983
vioscreen_rgrain
1.030493248
vioscreen_ribofla
0.542904161
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.0563
vioscreen_satoco
0.0
vioscreen_selenium
45.41047196
vioscreen_serine
1.154355904
vioscreen_sfa100
0.109150685
vioscreen_sfa120
0.23284930899999998
vioscreen_sfa140
0.45967123
vioscreen_sfa160
4.698684985
vioscreen_sfa170
0.024958902999999998
vioscreen_sfa180
1.4570411159999999
vioscreen_sfa200
0.117616439
vioscreen_sfa220
0.08509588900000001
vioscreen_sfa40
0.107808225
vioscreen_sfa60
0.055287672
vioscreen_sfa80
0.065863011
vioscreen_sfatot
7.513149481
vioscreen_sodium
1547.2410960000002
vioscreen_sorbitol
0.174410948
vioscreen_srvid
18572.0
vioscreen_starch
38.66701092
vioscreen_started
4/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.38882304
vioscreen_sweet_servings
0.17159000000000002
vioscreen_tagatose
0.77186296
vioscreen_tfa161t
0.013041097
vioscreen_tfa181t
0.388575347
vioscreen_tfa182t
0.10797259199999999
vioscreen_tgrain
3.0524383960000003
vioscreen_thiamin
0.742575449
vioscreen_threonin
0.880082138
vioscreen_time
24.0
vioscreen_totaltfa
0.573945221
vioscreen_totcla
0.012684931000000002
vioscreen_totfolat
188.41228600000002
vioscreen_totsugar
31.65449486
vioscreen_tryptoph
0.30728768100000003
vioscreen_tyrosine
0.8108221179999999
vioscreen_user_id
18572.0
vioscreen_v_drkgr
0.5126575210000001
vioscreen_v_orange
0.227287669
vioscreen_v_other
0.73246577
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.00060274
vioscreen_v_tomato
0.42019176700000005
vioscreen_v_total
1.8932605480000002
vioscreen_valine
1.170958887
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.8
vioscreen_visit
1.0
vioscreen_vita_iu
12566.424659999999
vioscreen_vita_rae
666.9107021000001
vioscreen_vita_re
1287.495805
vioscreen_vitb12
0.670767212
vioscreen_vitb6
0.7399176609999999
vioscreen_vitc
60.16584439
vioscreen_vitd
0.853123328
vioscreen_vitd2
0.000410959
vioscreen_vitd3
0.8527397259999999
vioscreen_vitd_iu
34.12493311
vioscreen_vite_iu
9.578437366000001
vioscreen_vitk
267.5652611
vioscreen_water
2053.0991440000003
vioscreen_weight
Not provided
vioscreen_wgrain
2.021917808
vioscreen_whole_grain_servings
1.93975
vioscreen_xylitol
0.02282192
vioscreen_zinc
3.437507023
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
108.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)