American Gut Project; 10317.000020788
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632952
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020788
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
34.0
age_corrected
34.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
20788
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1981.0
bmi
20.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-22
collection month
April
collection season
Spring
collection time
10:00
collection_timestamp
2015-04-22 10:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
22.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
52e9225f6771532a721a2db42a26fbb5883c2ac5209162c035ef4edae07fa38a3e936c45973955cd766bdcd84b43c961925ad77ea450d607a3c7a8501e40b7af
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
Within the past 6 months
last_travel
6 months
latitude
53.9
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-2.8
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
Two
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020788
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
false
sex
male
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
b97fad9a2eec187c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.303068501
vioscreen_addsugar
1.517671266
vioscreen_adsugtot
1.5147671630000001
vioscreen_age
214.0
vioscreen_alanine
5.94095877
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
11538.49589
vioscreen_alphtoce
17.611369600000003
vioscreen_alphtoco
16.7255351
vioscreen_arginine
6.737561537
vioscreen_ash
26.84468643
vioscreen_aspartam
0.0
vioscreen_aspartic
10.81188998
vioscreen_avcarb
82.95413634
vioscreen_bcodeid
Not provided
vioscreen_betacar
28021.65753
vioscreen_betacryp
68.1724101
vioscreen_betaine
27.54715325
vioscreen_betatoco
0.372465745
vioscreen_biochana
0.003917808
vioscreen_bmi
Not provided
vioscreen_caffeine
71.03999893
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.04855
vioscreen_calcium_servings
1.45353
vioscreen_calories
1767.853425
vioscreen_carbo
111.5206229
vioscreen_cholest
792.366524
vioscreen_choline
826.2723459
vioscreen_clac9t11
0.114054797
vioscreen_clat10c12
0.025863015
vioscreen_copper
5.813506662000001
vioscreen_coumest
0.000410959
vioscreen_cystine
1.560876799
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.048547942999999996
vioscreen_d_tot_soym
0.048547942999999996
vioscreen_d_total
0.048547942999999996
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.18747945300000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.458630204
vioscreen_discfat_oil
28.05621789
vioscreen_discfat_sol
33.37931293
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.038657533
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
1.5000548480000002
vioscreen_f_nj_total
1.5000548480000002
vioscreen_f_other
1.5000548480000002
vioscreen_f_total
1.538712342
vioscreen_fat
106.02232450000001
vioscreen_fiber
28.56651862
vioscreen_fibh2o
6.54224703
vioscreen_fibinso
22.0591235
vioscreen_finished
11/18/14
vioscreen_fish_servings
11.541730000000001
vioscreen_fol_deqv
645.5441781000001
vioscreen_fol_nat
630.1471747
vioscreen_fol_syn
9.05013712
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
3.1
vioscreen_fructose
13.70309557
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.7028766790000001
vioscreen_g_total
0.7028766790000001
vioscreen_g_whl
0.0
vioscreen_galactos
0.15852056
vioscreen_gammtoco
7.228246736
vioscreen_gender
false
vioscreen_genistn
0.225506843
vioscreen_glac
19.40268354
vioscreen_gltc
24.60956229
vioscreen_glucose
15.32539598
vioscreen_glutamic
16.532631900000002
vioscreen_glycine
4.945287751
vioscreen_glycitn
0.056410959000000004
vioscreen_grams
4473.813699
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
8.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
0.8
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
64.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.5
vioscreen_hei_score
61.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.009918129
vioscreen_inositol
0.017315069
vioscreen_iron
13.2813704
vioscreen_isoleuc
4.7512875910000005
vioscreen_isomalt
0.0
vioscreen_joules
7396.69863
vioscreen_juice_servings
0.07729
vioscreen_lactitol
0.0
vioscreen_lactose
0.430136986
vioscreen_legumes
0.0
vioscreen_leucine
8.276164517
vioscreen_line_gi
226.18610869999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
8061.3
vioscreen_lycopene
3655.67363
vioscreen_lysine
8.200602659
vioscreen_m_egg
1.56720556
vioscreen_m_fish_hi
6.432356325
vioscreen_m_fish_lo
0.144904108
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.620000008
vioscreen_m_mpf
9.688273892
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
2.058575356
vioscreen_m_poult
0.411123281
vioscreen_m_soy
0.002356164
vioscreen_magnes
394.89375
vioscreen_maltitol
0.0
vioscreen_maltose
0.060465758
vioscreen_mangan
3.654466101
vioscreen_mannitol
0.860438433
vioscreen_methhis3
25.9011799
vioscreen_methion
2.672328667
vioscreen_mfa141
0.034164382
vioscreen_mfa161
2.62246562
vioscreen_mfa181
44.43040989
vioscreen_mfa201
1.322547975
vioscreen_mfa221
1.24569861
vioscreen_mfatot
49.82564747
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.7255351
vioscreen_nccglbr
59.34966824
vioscreen_nccglgr
41.50484803
vioscreen_niacin
38.55432898
vioscreen_niacineq
57.91591931
vioscreen_nitrogen
16.96939747
vioscreen_non_fried_fish_servings
11.541730000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.194274401
vioscreen_oxalic
222.041417
vioscreen_oxalicm
234.8730094
vioscreen_pantothe
11.31561831
vioscreen_pectins
7.588410344
vioscreen_pfa182
12.97736917
vioscreen_pfa183
0.987917965
vioscreen_pfa184
0.279424652
vioscreen_pfa204
0.503260281
vioscreen_pfa205
0.854137013
vioscreen_pfa225
0.32241098100000004
vioscreen_pfa226
1.751780722
vioscreen_pfatot
18.24506903
vioscreen_phenylal
4.511040507
vioscreen_phosphor
1612.9852740000001
vioscreen_phytic
420.8851027
vioscreen_pinitol
0.002356164
vioscreen_potass
4910.903082
vioscreen_procdate
10/28/15
vioscreen_proline
4.171862291
vioscreen_protanim
84.08353489
vioscreen_protein
104.739908
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.65638378
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
749.0
vioscreen_retinol
4224.684247
vioscreen_rgrain
0.44115069700000004
vioscreen_ribofla
3.085643862
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.6931
vioscreen_satoco
0.0
vioscreen_selenium
149.2733733
vioscreen_serine
4.762959185
vioscreen_sfa100
0.423671189
vioscreen_sfa120
0.495342474
vioscreen_sfa140
2.095178223
vioscreen_sfa160
17.40071302
vioscreen_sfa170
0.155917797
vioscreen_sfa180
6.302520334
vioscreen_sfa200
0.257150687
vioscreen_sfa220
0.37336986
vioscreen_sfa40
0.5144931739999999
vioscreen_sfa60
0.319863014
vioscreen_sfa80
0.195068506
vioscreen_sfatot
28.84740208
vioscreen_sodium
4534.460274
vioscreen_sorbitol
0.007561644
vioscreen_srvid
14584.0
vioscreen_starch
21.02972496
vioscreen_started
11/18/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.41246522
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.04487671
vioscreen_tfa181t
1.68397267
vioscreen_tfa182t
0.201041088
vioscreen_tgrain
0.44115069700000004
vioscreen_thiamin
1.146410966
vioscreen_threonin
4.660437848
vioscreen_time
13.0
vioscreen_totaltfa
1.947725981
vioscreen_totcla
0.140356153
vioscreen_totfolat
639.1973031
vioscreen_totsugar
47.03498502
vioscreen_tryptoph
1.162356191
vioscreen_tyrosine
3.552000281
vioscreen_user_id
14584.0
vioscreen_v_drkgr
0.056410959000000004
vioscreen_v_orange
2.112794641
vioscreen_v_other
2.557424718
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.788438353
vioscreen_v_total
5.515068492999999
vioscreen_valine
5.386822092
vioscreen_veg5_day
12.0
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
11.0
vioscreen_visit
1.0
vioscreen_vita_iu
70458.50959
vioscreen_vita_rae
7043.436301000001
vioscreen_vita_re
9862.182877
vioscreen_vitb12
34.35320527
vioscreen_vitb6
3.6662741469999998
vioscreen_vitc
126.22603810000001
vioscreen_vitd
30.05679581
vioscreen_vitd2
0.0
vioscreen_vitd3
30.05679581
vioscreen_vitd_iu
1202.2718320000001
vioscreen_vite_iu
24.96369863
vioscreen_vitk
122.0044092
vioscreen_water
4138.659589
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.052082197999999996
vioscreen_zinc
10.85306748
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never