10317.000029429; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633715
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029429
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29429
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
28.65
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-29
collection month
June
collection season
Summer
collection time
06:30
collection_timestamp
2015-06-29 06:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
27.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7d8a011fc2fcc49b62f710f934324708fc50a53af3f6eb4455a25ccd2f6c2bd299fa10f130a37a59033d85f856eaf7597889ad130943a1fb7fa7574f9b6e3d27
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-2.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029429
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Occasionally (1-2 times/week)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
14f508185c954721
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.195479385
vioscreen_a_cal
227.7803938
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.264767163
vioscreen_addsugar
12.5801905
vioscreen_adsugtot
11.40649213
vioscreen_age
215.0
vioscreen_alanine
6.5109863279999995
vioscreen_alcohol
31.44726027
vioscreen_alcohol_servings
2.19548
vioscreen_alphacar
1663.936644
vioscreen_alphtoce
18.96161708
vioscreen_alphtoco
17.56860419
vioscreen_arginine
7.06720556
vioscreen_ash
27.34046982
vioscreen_aspartam
0.0
vioscreen_aspartic
11.3041631
vioscreen_avcarb
68.47548159
vioscreen_bcodeid
Not provided
vioscreen_betacar
11647.61507
vioscreen_betacryp
299.9513699
vioscreen_betaine
56.863559499999994
vioscreen_betatoco
0.276027397
vioscreen_biochana
0.0075890409999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
236.6702483
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.23496
vioscreen_calcium_servings
1.6536400000000002
vioscreen_calories
2431.247089
vioscreen_carbo
94.14940069
vioscreen_cholest
1055.5682359999998
vioscreen_choline
976.9420377
vioscreen_clac9t11
0.234164387
vioscreen_clat10c12
0.058904104000000006
vioscreen_copper
1.896548086
vioscreen_coumest
0.177506852
vioscreen_cystine
1.6282736580000001
vioscreen_d_cheese
0.07189041
vioscreen_d_milk
0.162876714
vioscreen_d_tot_soym
0.23495891
vioscreen_d_total
0.23495891
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.269260271
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.440986362
vioscreen_discfat_oil
47.79758669
vioscreen_discfat_sol
58.29285103
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.022301368
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.885753475
vioscreen_f_nj_total
0.885753475
vioscreen_f_other
0.885753475
vioscreen_f_total
0.9080548009999999
vioscreen_fat
157.898994
vioscreen_fiber
25.67528628
vioscreen_fibh2o
8.956356352
vioscreen_fibinso
16.55558781
vioscreen_finished
6/29/15
vioscreen_fish_servings
3.5305800000000005
vioscreen_fol_deqv
504.48681510000006
vioscreen_fol_nat
475.04464900000005
vioscreen_fol_syn
17.31298694
vioscreen_formontn
0.000438356
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
1.8
vioscreen_fructose
10.36210871
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
0.29109589
vioscreen_g_total
0.29109589
vioscreen_g_whl
0.0
vioscreen_galactos
0.18194521600000002
vioscreen_gammtoco
12.58183594
vioscreen_gender
false
vioscreen_genistn
0.294219176
vioscreen_glac
14.52063089
vioscreen_gltc
17.75517712
vioscreen_glucose
13.78748127
vioscreen_glutamic
18.018548000000003
vioscreen_glycine
5.893041658
vioscreen_glycitn
0.008794521
vioscreen_grams
3551.6671229999997
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
17.2
vioscreen_hei2010_fatty_acids
8.2
vioscreen_hei2010_fruit
2.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.6
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.3
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
4.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
49.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.2457265360000003
vioscreen_inositol
0.069835616
vioscreen_iron
14.38062794
vioscreen_isoleuc
5.301013685
vioscreen_isomalt
0.0
vioscreen_joules
10172.33562
vioscreen_juice_servings
0.0446
vioscreen_lactitol
0.0
vioscreen_lactose
1.665150765
vioscreen_legumes
0.136246574
vioscreen_leucine
8.876602633
vioscreen_line_gi
142.14439209999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5318.09589
vioscreen_lycopene
10554.04795
vioscreen_lysine
8.720054982
vioscreen_m_egg
4.030493164
vioscreen_m_fish_hi
1.419452155
vioscreen_m_fish_lo
0.592767125
vioscreen_m_frank
1.376246539
vioscreen_m_meat
5.303397234
vioscreen_m_mpf
9.527205292
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.29328768
vioscreen_m_poult
0.5422739529999999
vioscreen_m_soy
0.000356164
vioscreen_magnes
296.9212543
vioscreen_maltitol
0.0
vioscreen_maltose
1.414109656
vioscreen_mangan
2.148520274
vioscreen_mannitol
0.5133698760000001
vioscreen_methhis3
31.4121067
vioscreen_methion
2.8936162239999996
vioscreen_mfa141
0.254876688
vioscreen_mfa161
3.756958677
vioscreen_mfa181
65.45155715
vioscreen_mfa201
0.759260287
vioscreen_mfa221
0.252986312
vioscreen_mfatot
70.85370291
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.56860419
vioscreen_nccglbr
52.70046019
vioscreen_nccglgr
36.86386451
vioscreen_niacin
28.05681988
vioscreen_niacineq
46.46651862
vioscreen_nitrogen
18.41060306
vioscreen_non_fried_fish_servings
3.5305800000000005
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.795945259
vioscreen_oxalic
254.9939426
vioscreen_oxalicm
245.75010699999999
vioscreen_pantothe
10.29254869
vioscreen_pectins
5.441918611
vioscreen_pfa182
23.91597282
vioscreen_pfa183
3.01164417
vioscreen_pfa184
0.055863012000000004
vioscreen_pfa204
0.47019176700000004
vioscreen_pfa205
0.186164396
vioscreen_pfa225
0.08520548
vioscreen_pfa226
0.45778081200000004
vioscreen_pfatot
28.34613656
vioscreen_phenylal
4.957260006
vioscreen_phosphor
1455.8844179999999
vioscreen_phytic
417.35569350000003
vioscreen_pinitol
0.000191781
vioscreen_potass
3967.6671229999997
vioscreen_procdate
10/28/15
vioscreen_proline
5.24909668
vioscreen_protanim
97.10390625
vioscreen_protein
114.4629709
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.36265652
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
362.0
vioscreen_retinol
1056.358219
vioscreen_rgrain
0.5503013720000001
vioscreen_ribofla
2.888849462
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.01173
vioscreen_satoco
0.0
vioscreen_selenium
161.63666519999998
vioscreen_serine
5.5863839760000005
vioscreen_sfa100
0.475287701
vioscreen_sfa120
0.520684898
vioscreen_sfa140
2.59156143
vioscreen_sfa160
27.21893461
vioscreen_sfa170
0.35145209299999997
vioscreen_sfa180
10.72235459
vioscreen_sfa200
0.289589075
vioscreen_sfa220
0.237671254
vioscreen_sfa40
0.518493192
vioscreen_sfa60
0.317315089
vioscreen_sfa80
0.195479448
vioscreen_sfatot
43.78010488
vioscreen_sodium
5176.903767
vioscreen_sorbitol
0.089260269
vioscreen_srvid
19982.0
vioscreen_starch
17.02386291
vioscreen_started
6/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.82624679
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.00769863
vioscreen_tfa161t
0.12761642199999998
vioscreen_tfa181t
3.1052058810000003
vioscreen_tfa182t
0.503424658
vioscreen_tgrain
0.5503013720000001
vioscreen_thiamin
1.243561544
vioscreen_threonin
4.747369636
vioscreen_time
4223.0
vioscreen_totaltfa
3.804629642
vioscreen_totcla
0.293424632
vioscreen_totfolat
492.35757710000007
vioscreen_totsugar
37.73668397
vioscreen_tryptoph
1.105589148
vioscreen_tyrosine
3.8274250189999997
vioscreen_user_id
19982.0
vioscreen_v_drkgr
0.7207945109999999
vioscreen_v_orange
0.48821917
vioscreen_v_other
1.528301249
vioscreen_v_potato
0.033835617000000005
vioscreen_v_starcy
0.019342466000000003
vioscreen_v_tomato
1.479150725
vioscreen_v_total
4.269725558999999
vioscreen_valine
5.901369862999999
vioscreen_veg5_day
9.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
8.5
vioscreen_visit
1.0
vioscreen_vita_iu
24571.0
vioscreen_vita_rae
2108.824486
vioscreen_vita_re
3161.286301
vioscreen_vitb12
12.588740099999999
vioscreen_vitb6
2.7486851519999997
vioscreen_vitc
188.6159033
vioscreen_vitd
12.5126311
vioscreen_vitd2
0.002383562
vioscreen_vitd3
12.51027531
vioscreen_vitd_iu
500.50524400000006
vioscreen_vite_iu
26.20249893
vioscreen_vitk
301.3008348
vioscreen_water
3168.7476030000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.023424657999999998
vioscreen_zinc
16.34682149
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
78.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never