American Gut Project; 10317.000031854
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634345
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031854
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031854
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
34.93
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-09-13
collection month
September
collection season
Fall
collection time
23:00
collection_timestamp
2015-09-13 23:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
148.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c6e2f9ba84feac712a6c269fc55fa2c59a2574544f4c117508eb7f0007cb7d3cbf71d36fc0a4a3c3834473b0014ef7c18d83f33cd13355142b44870a167272c2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
3 months
latitude
47.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-122.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031854
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
7b9f336a101bbf63
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.104739725
vioscreen_a_cal
12.74643889
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.611479292
vioscreen_addsugar
27.44265839
vioscreen_adsugtot
25.22621736
vioscreen_age
215.0
vioscreen_alanine
3.126191607
vioscreen_alcohol
1.6016165119999999
vioscreen_alcohol_servings
0.10474000000000001
vioscreen_alphacar
1225.452483
vioscreen_alphtoce
7.363780902
vioscreen_alphtoco
6.855480121
vioscreen_arginine
3.66397287
vioscreen_ash
11.15052039
vioscreen_aspartam
0.0
vioscreen_aspartic
5.570630217000001
vioscreen_avcarb
81.16291203
vioscreen_bcodeid
Not provided
vioscreen_betacar
5394.657192000001
vioscreen_betacryp
77.46243579
vioscreen_betaine
69.66659354
vioscreen_betatoco
0.23189043
vioscreen_biochana
0.001315068
vioscreen_bmi
Not provided
vioscreen_caffeine
237.0849957
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.24885
vioscreen_calcium_servings
1.06134
vioscreen_calories
1128.496233
vioscreen_carbo
97.5572988
vioscreen_cholest
243.29216609999997
vioscreen_choline
270.6663099
vioscreen_clac9t11
0.139506865
vioscreen_clat10c12
0.031013698
vioscreen_copper
0.681205478
vioscreen_coumest
0.181123289
vioscreen_cystine
0.7587123920000001
vioscreen_d_cheese
0.15095891
vioscreen_d_milk
0.040383561
vioscreen_d_tot_soym
0.24884932
vioscreen_d_total
0.24884932
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.185753433
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.689780834
vioscreen_discfat_oil
11.44953446
vioscreen_discfat_sol
28.56874197
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0015616439999999998
vioscreen_f_citmlb
0.628904076
vioscreen_f_nj_citmlb
0.57501367
vioscreen_f_nj_other
1.048712325
vioscreen_f_nj_total
1.6237533780000002
vioscreen_f_other
1.048712325
vioscreen_f_total
1.6776711659999999
vioscreen_fat
59.07079409
vioscreen_fiber
16.35443734
vioscreen_fibh2o
5.98002729
vioscreen_fibinso
10.41049403
vioscreen_finished
9/13/15
vioscreen_fish_servings
1.23558
vioscreen_fol_deqv
202.77611299999998
vioscreen_fol_nat
158.4519799
vioscreen_fol_syn
26.06742295
vioscreen_formontn
0.001260274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.1
vioscreen_frtsumm
3.4
vioscreen_fructose
15.44117749
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.562904128
vioscreen_g_total
1.112164474
vioscreen_g_whl
0.549260262
vioscreen_galactos
0.154630144
vioscreen_gammtoco
4.100630752
vioscreen_gender
false
vioscreen_genistn
0.064493148
vioscreen_glac
36.84090325
vioscreen_gltc
41.27377997
vioscreen_glucose
12.83824647
vioscreen_glutamic
9.870959305
vioscreen_glycine
2.841342707
vioscreen_glycitn
0.0
vioscreen_grams
1387.605993
vioscreen_hei2010_dairy
1.7
vioscreen_hei2010_empty_calories
12.2
vioscreen_hei2010_fatty_acids
0.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
61.1
vioscreen_hei_sodium
5.9
vioscreen_hei_sol_fat_alc_add_sug
11.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.7191506580000002
vioscreen_inositol
0.09320548099999999
vioscreen_iron
5.731615876
vioscreen_isoleuc
2.681863194
vioscreen_isomalt
0.0
vioscreen_joules
4721.6304789999995
vioscreen_juice_servings
0.10784
vioscreen_lactitol
0.0
vioscreen_lactose
1.959260287
vioscreen_legumes
0.0
vioscreen_leucine
4.460219125
vioscreen_line_gi
219.30492290000004
vioscreen_low_fat_dairy_serving
0.057510000000000006
vioscreen_lutzeax
1621.3339039999998
vioscreen_lycopene
1804.5568489999998
vioscreen_lysine
4.434301758
vioscreen_m_egg
0.28561643800000003
vioscreen_m_fish_hi
0.610931522
vioscreen_m_fish_lo
0.093150685
vioscreen_m_frank
0.0
vioscreen_m_meat
2.279123301
vioscreen_m_mpf
4.886876605
vioscreen_m_nutsd
1.111643752
vioscreen_m_organ
0.0
vioscreen_m_poult
1.903671306
vioscreen_m_soy
0.0
vioscreen_magnes
181.65087759999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.291315032
vioscreen_mangan
1.737835275
vioscreen_mannitol
0.435424637
vioscreen_methhis3
20.52383481
vioscreen_methion
1.418767224
vioscreen_mfa141
0.060931510999999994
vioscreen_mfa161
1.070410909
vioscreen_mfa181
19.30117856
vioscreen_mfa201
0.29608214899999996
vioscreen_mfa221
0.122931504
vioscreen_mfatot
21.00443734
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
6.855480121
vioscreen_nccglbr
63.14412992
vioscreen_nccglgr
44.17095997
vioscreen_niacin
16.59769772
vioscreen_niacineq
26.67133722
vioscreen_nitrogen
9.589697935
vioscreen_non_fried_fish_servings
1.23558
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.27383565
vioscreen_oxalic
104.336601
vioscreen_oxalicm
119.2415133
vioscreen_pantothe
4.532109843
vioscreen_pectins
2.691589355
vioscreen_pfa182
7.9158898760000005
vioscreen_pfa183
0.910575302
vioscreen_pfa184
0.027041096
vioscreen_pfa204
0.138712332
vioscreen_pfa205
0.090849315
vioscreen_pfa225
0.051123287
vioscreen_pfa226
0.195095888
vioscreen_pfatot
9.385041203
vioscreen_phenylal
2.437753505
vioscreen_phosphor
739.5421233
vioscreen_phytic
408.6100171
vioscreen_pinitol
0.003890411
vioscreen_potass
1984.8678079999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.9122742539999997
vioscreen_protanim
46.75068493
vioscreen_protein
59.02871361
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
12.27794307
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
84.0
vioscreen_retinol
242.98373289999998
vioscreen_rgrain
0.609616423
vioscreen_ribofla
1.335095884
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7838900000000002
vioscreen_satoco
0.0
vioscreen_selenium
71.45769478
vioscreen_serine
2.507890592
vioscreen_sfa100
0.746547918
vioscreen_sfa120
1.320739662
vioscreen_sfa140
2.7276711660000004
vioscreen_sfa160
11.41898812
vioscreen_sfa170
0.121205484
vioscreen_sfa180
4.923014434
vioscreen_sfa200
0.131013708
vioscreen_sfa220
0.18717806
vioscreen_sfa40
0.840657524
vioscreen_sfa60
0.515232912
vioscreen_sfa80
0.39473973100000004
vioscreen_sfatot
23.63457566
vioscreen_sodium
1511.528082
vioscreen_sorbitol
0.774219168
vioscreen_srvid
20720.0
vioscreen_starch
14.92029912
vioscreen_started
9/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.63698898
vioscreen_sweet_servings
0.24472
vioscreen_tagatose
0.852602773
vioscreen_tfa161t
0.062821919
vioscreen_tfa181t
1.4395889069999999
vioscreen_tfa182t
0.220712322
vioscreen_tgrain
1.177424684
vioscreen_thiamin
0.7497260109999999
vioscreen_threonin
2.358438403
vioscreen_time
25.0
vioscreen_totaltfa
1.77413698
vioscreen_totcla
0.17158903399999997
vioscreen_totfolat
184.5194135
vioscreen_totsugar
57.05716503
vioscreen_tryptoph
0.603808176
vioscreen_tyrosine
1.976602465
vioscreen_user_id
20720.0
vioscreen_v_drkgr
0.23756164100000002
vioscreen_v_orange
0.324191765
vioscreen_v_other
0.543178109
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.208739712
vioscreen_v_total
1.313643866
vioscreen_valine
2.91662999
vioscreen_veg5_day
3.3
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.6
vioscreen_visit
1.0
vioscreen_vita_iu
10886.992470000001
vioscreen_vita_rae
746.8279966
vioscreen_vita_re
1250.670634
vioscreen_vitb12
3.053753077
vioscreen_vitb6
1.3237532109999999
vioscreen_vitc
103.37614509999999
vioscreen_vitd
3.959397407
vioscreen_vitd2
0.0
vioscreen_vitd3
3.959397407
vioscreen_vitd_iu
158.37589630000002
vioscreen_vite_iu
10.19934249
vioscreen_vitk
92.49550514
vioscreen_water
1167.472089
vioscreen_weight
Not provided
vioscreen_wgrain
0.567808219
vioscreen_whole_grain_servings
0.5492600000000001
vioscreen_xylitol
0.029589038999999998
vioscreen_zinc
7.204191861
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)