American Gut Project; 10317.000022599
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632529
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022599
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22599
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
24.01
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2014-12-26
collection month
December
collection season
Winter
collection time
11:30
collection_timestamp
2014-12-26 11:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1689.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Daily
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
c81e6252143d0ef2920b75f98298239d2512cb26f21370310b84793f9ccd34eef429f4583ec4aea1838433ae711eb0bdcf17b8dd6e1f5a89e346223250237c47
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
39.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022599
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
b50128d996431381
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
2.19476703
vioscreen_a_cal
276.21500430000003
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
22.26550728
vioscreen_addsugar
114.49232659999998
vioscreen_adsugtot
90.74046447
vioscreen_age
214.0
vioscreen_alanine
2.786383307
vioscreen_alcohol
34.20462864
vioscreen_alcohol_servings
2.19477
vioscreen_alphacar
588.1438356000001
vioscreen_alphtoce
8.698354559
vioscreen_alphtoco
7.61388926
vioscreen_arginine
2.963151153
vioscreen_ash
18.50040935
vioscreen_aspartam
0.0
vioscreen_aspartic
5.25
vioscreen_avcarb
222.5626284
vioscreen_bcodeid
Not provided
vioscreen_betacar
1928.872774
vioscreen_betacryp
16.9737813
vioscreen_betaine
60.66252676
vioscreen_betatoco
0.17482189
vioscreen_biochana
0.002219178
vioscreen_bmi
Not provided
vioscreen_caffeine
627.8664384
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.79625
vioscreen_calcium_servings
3.05301
vioscreen_calories
2285.616952
vioscreen_carbo
243.91639550000002
vioscreen_cholest
261.10565069999996
vioscreen_choline
322.3853168
vioscreen_clac9t11
0.197424672
vioscreen_clat10c12
0.045534249000000006
vioscreen_copper
0.8504383659999999
vioscreen_coumest
0.376712329
vioscreen_cystine
0.6608219089999999
vioscreen_d_cheese
0.380438358
vioscreen_d_milk
1.3745205809999999
vioscreen_d_tot_soym
1.7962465890000001
vioscreen_d_total
1.7962465890000001
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
0.387205484
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.403123495
vioscreen_discfat_oil
25.483971
vioscreen_discfat_sol
54.26715004
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
1.332027571
vioscreen_f_nj_citmlb
1.329205657
vioscreen_f_nj_other
0.699972534
vioscreen_f_nj_total
2.029342024
vioscreen_f_other
0.699972534
vioscreen_f_total
2.032163855
vioscreen_fat
100.0296126
vioscreen_fiber
21.33424658
vioscreen_fibh2o
10.34013672
vioscreen_fibinso
10.95027357
vioscreen_finished
12/23/14
vioscreen_fish_servings
0.8605799999999999
vioscreen_fol_deqv
293.82296660000003
vioscreen_fol_nat
215.5131207
vioscreen_fol_syn
46.00758776
vioscreen_formontn
0.00030137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.1
vioscreen_fructose
23.96660424
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.6660000740000003
vioscreen_g_total
2.7631779080000003
vioscreen_g_whl
0.09720547800000001
vioscreen_galactos
0.576821899
vioscreen_gammtoco
9.923945179
vioscreen_gender
false
vioscreen_genistn
0.149452053
vioscreen_glac
98.91194349
vioscreen_gltc
105.31510060000001
vioscreen_glucose
28.37690764
vioscreen_glutamic
11.10471158
vioscreen_glycine
2.397780661
vioscreen_glycitn
0.000520548
vioscreen_grams
3285.1154109999998
vioscreen_hei2010_dairy
6.0
vioscreen_hei2010_empty_calories
6.0
vioscreen_hei2010_fatty_acids
1.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.2
vioscreen_hei2010_protien_foods
3.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
52.7
vioscreen_hei2010_sea_foods_plant_protiens
2.3
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
1.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
1.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.0
vioscreen_hei_meat_beans
7.2
vioscreen_hei_milk
6.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
46.1
vioscreen_hei_sodium
8.3
vioscreen_hei_sol_fat_alc_add_sug
0.1
vioscreen_hei_veg
1.9
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.7436165590000001
vioscreen_inositol
0.330739708
vioscreen_iron
8.91950717
vioscreen_isoleuc
2.743150685
vioscreen_isomalt
0.0
vioscreen_joules
9563.026027
vioscreen_juice_servings
0.00562
vioscreen_lactitol
0.0
vioscreen_lactose
24.11819349
vioscreen_legumes
0.069890412
vioscreen_leucine
4.781507518
vioscreen_line_gi
450.5321062
vioscreen_low_fat_dairy_serving
0.03833
vioscreen_lutzeax
1029.543493
vioscreen_lycopene
2282.885788
vioscreen_lysine
4.307807818
vioscreen_m_egg
0.12509588
vioscreen_m_fish_hi
0.17484931399999998
vioscreen_m_fish_lo
0.318273968
vioscreen_m_frank
0.128712317
vioscreen_m_meat
2.401479559
vioscreen_m_mpf
3.606602833
vioscreen_m_nutsd
0.08347945
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5832602720000001
vioscreen_m_soy
0.00309589
vioscreen_magnes
301.1136558
vioscreen_maltitol
0.0
vioscreen_maltose
4.822137535
vioscreen_mangan
3.340520989
vioscreen_mannitol
0.099561644
vioscreen_methhis3
13.21443707
vioscreen_methion
1.3778628000000002
vioscreen_mfa141
0.137534238
vioscreen_mfa161
1.53076707
vioscreen_mfa181
33.60449219
vioscreen_mfa201
0.298191792
vioscreen_mfa221
0.030739727
vioscreen_mfatot
35.7811296
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.61388926
vioscreen_nccglbr
188.0768836
vioscreen_nccglgr
131.5648973
vioscreen_niacin
16.79821945
vioscreen_niacineq
27.58961901
vioscreen_nitrogen
9.655726267999999
vioscreen_non_fried_fish_servings
0.8605799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.596931687
vioscreen_oxalic
128.3476884
vioscreen_oxalicm
150.78677230000002
vioscreen_pantothe
7.4561095360000005
vioscreen_pectins
2.8928219310000003
vioscreen_pfa182
14.92706683
vioscreen_pfa183
2.46819249
vioscreen_pfa184
0.00720548
vioscreen_pfa204
0.071726028
vioscreen_pfa205
0.039863014
vioscreen_pfa225
0.015890411
vioscreen_pfa226
0.066493147
vioscreen_pfatot
17.64399882
vioscreen_phenylal
2.581123582
vioscreen_phosphor
1171.599743
vioscreen_phytic
317.40383130000004
vioscreen_pinitol
0.032027396
vioscreen_potass
3439.3828770000005
vioscreen_procdate
10/28/15
vioscreen_proline
3.957013525
vioscreen_protanim
46.95770013
vioscreen_protein
59.84197881
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
12.88444055
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
671.0
vioscreen_retinol
443.43951200000004
vioscreen_rgrain
2.20969857
vioscreen_ribofla
2.7186302710000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.62545
vioscreen_satoco
0.0
vioscreen_selenium
70.53321383
vioscreen_serine
2.6988217710000004
vioscreen_sfa100
1.067588994
vioscreen_sfa120
2.002301276
vioscreen_sfa140
4.4766303910000005
vioscreen_sfa160
19.08117776
vioscreen_sfa170
0.102602742
vioscreen_sfa180
9.012823068
vioscreen_sfa200
0.143506842
vioscreen_sfa220
0.095671238
vioscreen_sfa40
1.155150698
vioscreen_sfa60
0.7155068590000001
vioscreen_sfa80
0.609342476
vioscreen_sfatot
38.78038313
vioscreen_sodium
2359.90839
vioscreen_sorbitol
0.26216439
vioscreen_srvid
16576.0
vioscreen_starch
40.20087757
vioscreen_started
12/23/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
64.14742616
vioscreen_sweet_servings
2.78356
vioscreen_tagatose
1.7427124019999998
vioscreen_tfa161t
0.065452058
vioscreen_tfa181t
3.015396912
vioscreen_tfa182t
0.690821985
vioscreen_tgrain
2.709150759
vioscreen_thiamin
1.1089589579999999
vioscreen_threonin
2.3227943730000002
vioscreen_time
33.0
vioscreen_totaltfa
3.8573697019999997
vioscreen_totcla
0.243506842
vioscreen_totfolat
261.5204837
vioscreen_totsugar
148.5451627
vioscreen_tryptoph
0.6483012579999999
vioscreen_tyrosine
2.1842738319999997
vioscreen_user_id
16576.0
vioscreen_v_drkgr
0.11290410699999999
vioscreen_v_orange
0.103397265
vioscreen_v_other
0.48101376100000004
vioscreen_v_potato
0.113479447
vioscreen_v_starcy
0.028054797000000003
vioscreen_v_tomato
0.099835613
vioscreen_v_total
0.9388494620000001
vioscreen_valine
3.123589335
vioscreen_veg5_day
1.6
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.9
vioscreen_visit
1.0
vioscreen_vita_iu
5202.2445210000005
vioscreen_vita_rae
629.3928082
vioscreen_vita_re
815.3447774
vioscreen_vitb12
4.247753572
vioscreen_vitb6
1.5010135180000002
vioscreen_vitc
104.72958050000001
vioscreen_vitd
5.220575369
vioscreen_vitd2
0.000410959
vioscreen_vitd3
5.2201921019999995
vioscreen_vitd_iu
208.8230148
vioscreen_vite_iu
11.29241224
vioscreen_vitk
102.5756314
vioscreen_water
2861.361644
vioscreen_weight
Not provided
vioscreen_wgrain
0.499452105
vioscreen_whole_grain_servings
0.09721
vioscreen_xylitol
0.102630145
vioscreen_zinc
9.641944028
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
80.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)