American Gut Project; 10317.000031856
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634346
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031856
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031856
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
26.63
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
08:12
collection_timestamp
2015-09-09 08:12
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
41.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Not provided
homecooked_meals_frequency
Daily
host common name
human
host subject id
8ed3d2cb4e0f467be7dfceb8816dacf0a16393f7d62568eab40f1f5db2fbbce4f559bf755df670d0ef3a3b4ee79432f9a3dab4abf1e88cf30ef43d1baab8e4af
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Not provided
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031856
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
7fbb547147ddfd06
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.987342145
vioscreen_addsugar
29.33564319
vioscreen_adsugtot
25.96701359
vioscreen_age
215.0
vioscreen_alanine
5.416137695
vioscreen_alcohol
0.010630137
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
2809.391781
vioscreen_alphtoce
14.21583637
vioscreen_alphtoco
13.15383802
vioscreen_arginine
5.879945687
vioscreen_ash
27.03871468
vioscreen_aspartam
0.0
vioscreen_aspartic
10.29936992
vioscreen_avcarb
167.75537240000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
15814.189040000001
vioscreen_betacryp
594.5830908
vioscreen_betaine
121.5136665
vioscreen_betatoco
0.24534247399999998
vioscreen_biochana
0.008547945
vioscreen_bmi
Not provided
vioscreen_caffeine
12.71893194
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.5843599999999998
vioscreen_calcium_servings
4.137919999999999
vioscreen_calories
2429.707534
vioscreen_carbo
196.04137409999998
vioscreen_cholest
450.91571060000007
vioscreen_choline
472.4218322
vioscreen_clac9t11
0.39016439399999997
vioscreen_clat10c12
0.084328769
vioscreen_copper
1.5066576809999999
vioscreen_coumest
0.004547945
vioscreen_cystine
1.2685204909999999
vioscreen_d_cheese
0.698219195
vioscreen_d_milk
1.743287471
vioscreen_d_tot_soym
2.5843559369999998
vioscreen_d_total
2.5843559369999998
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.035041096
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.7722467290000001
vioscreen_discfat_oil
25.6201921
vioscreen_discfat_sol
83.40725064
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001287671
vioscreen_f_citmlb
0.8780547679999999
vioscreen_f_nj_citmlb
0.23498627100000002
vioscreen_f_nj_other
0.607890424
vioscreen_f_nj_total
0.8428766959999999
vioscreen_f_other
0.615424671
vioscreen_f_total
1.4935068630000001
vioscreen_fat
139.6680009
vioscreen_fiber
28.28163795
vioscreen_fibh2o
6.057451975
vioscreen_fibinso
22.31780956
vioscreen_finished
9/4/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
498.10359589999996
vioscreen_fol_nat
482.8050086
vioscreen_fol_syn
8.988000321
vioscreen_formontn
0.001835616
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
1.9
vioscreen_frtsumm
3.0
vioscreen_fructose
30.16027397
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.542410947
vioscreen_g_total
2.249095676
vioscreen_g_whl
1.706712362
vioscreen_galactos
0.355232803
vioscreen_gammtoco
9.473233492
vioscreen_gender
false
vioscreen_genistn
0.04221918
vioscreen_glac
64.30263271
vioscreen_gltc
71.85698309
vioscreen_glucose
31.24893247
vioscreen_glutamic
20.26761558
vioscreen_glycine
4.722986342
vioscreen_glycitn
0.007369863000000001
vioscreen_grams
2792.760103
vioscreen_hei2010_dairy
8.2
vioscreen_hei2010_empty_calories
9.7
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
3.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
56.3
vioscreen_hei2010_sea_foods_plant_protiens
0.1
vioscreen_hei2010_sodium
0.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.3
vioscreen_hei2010_whole_grains
4.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.8
vioscreen_hei_grains
1.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.2
vioscreen_hei_non_juice_frt
4.3
vioscreen_hei_oils
8.8
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.3
vioscreen_hei_sodium
0.4
vioscreen_hei_sol_fat_alc_add_sug
10.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
3.187369903
vioscreen_inositol
0.332164399
vioscreen_iron
12.12906946
vioscreen_isoleuc
5.10860278
vioscreen_isomalt
0.0
vioscreen_joules
10165.900679999999
vioscreen_juice_servings
1.3012299999999999
vioscreen_lactitol
0.0
vioscreen_lactose
25.23465593
vioscreen_legumes
0.004082192
vioscreen_leucine
8.322384016
vioscreen_line_gi
466.9263699
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
9934.694521
vioscreen_lycopene
17759.27534
vioscreen_lysine
8.240849743
vioscreen_m_egg
0.303561631
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
3.8133150280000003
vioscreen_m_mpf
7.93630137
vioscreen_m_nutsd
0.030958905
vioscreen_m_organ
0.0
vioscreen_m_poult
4.122986007
vioscreen_m_soy
0.000767123
vioscreen_magnes
377.6929795
vioscreen_maltitol
0.0
vioscreen_maltose
2.250301664
vioscreen_mangan
3.458657628
vioscreen_mannitol
0.8372876309999999
vioscreen_methhis3
30.62597389
vioscreen_methion
2.599287812
vioscreen_mfa141
0.220849317
vioscreen_mfa161
2.470411327
vioscreen_mfa181
42.88534086
vioscreen_mfa201
0.433095895
vioscreen_mfa221
0.009123288
vioscreen_mfatot
46.27714576
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
13.15383802
vioscreen_nccglbr
122.2721533
vioscreen_nccglgr
85.51822025
vioscreen_niacin
26.77190978
vioscreen_niacineq
46.35470355
vioscreen_nitrogen
17.8277812
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.130520923
vioscreen_oxalic
305.89925089999997
vioscreen_oxalicm
292.47825339999997
vioscreen_pantothe
7.083643247
vioscreen_pectins
5.937699326000001
vioscreen_pfa182
17.60279457
vioscreen_pfa183
3.017232649
vioscreen_pfa184
0.001205479
vioscreen_pfa204
0.22024657399999997
vioscreen_pfa205
0.019342467
vioscreen_pfa225
0.035753423
vioscreen_pfa226
0.05780822
vioscreen_pfatot
21.07007973
vioscreen_phenylal
4.632931895
vioscreen_phosphor
1669.139384
vioscreen_phytic
444.23668660000004
vioscreen_pinitol
0.00030137
vioscreen_potass
4840.4431509999995
vioscreen_procdate
10/28/15
vioscreen_proline
6.356492802999999
vioscreen_protanim
87.22079944
vioscreen_protein
110.94143840000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.72016267
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
121.0
vioscreen_retinol
683.7826199
vioscreen_rgrain
0.625808214
vioscreen_ribofla
2.172191714
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
9.50567
vioscreen_satoco
0.0
vioscreen_selenium
115.5295912
vioscreen_serine
4.732739592
vioscreen_sfa100
1.892548025
vioscreen_sfa120
2.160548213
vioscreen_sfa140
6.96134284
vioscreen_sfa160
29.51986034
vioscreen_sfa170
0.356301336
vioscreen_sfa180
13.02819055
vioscreen_sfa200
0.202164386
vioscreen_sfa220
0.09643836900000001
vioscreen_sfa40
2.223561577
vioscreen_sfa60
1.457835409
vioscreen_sfa80
1.033999926
vioscreen_sfatot
59.35744863
vioscreen_sodium
4742.997603
vioscreen_sorbitol
0.5496985870000001
vioscreen_srvid
20622.0
vioscreen_starch
37.37580801
vioscreen_started
9/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
27.89970034
vioscreen_sweet_servings
0.56986
vioscreen_tagatose
1.931369729
vioscreen_tfa161t
0.081150682
vioscreen_tfa181t
3.383150618
vioscreen_tfa182t
0.695232862
vioscreen_tgrain
2.257095797
vioscreen_thiamin
1.535178156
vioscreen_threonin
4.454548039
vioscreen_time
28.0
vioscreen_totaltfa
4.35890411
vioscreen_totcla
0.47372607899999997
vioscreen_totfolat
491.7929795
vioscreen_totsugar
117.9090111
vioscreen_tryptoph
1.172739776
vioscreen_tyrosine
3.825918036
vioscreen_user_id
20622.0
vioscreen_v_drkgr
0.917671183
vioscreen_v_orange
0.592410989
vioscreen_v_other
2.899699005
vioscreen_v_potato
0.22386301100000003
vioscreen_v_starcy
0.346465772
vioscreen_v_tomato
2.416849382
vioscreen_v_total
7.396822159
vioscreen_valine
5.59682149
vioscreen_veg5_day
14.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
14.8
vioscreen_visit
1.0
vioscreen_vita_iu
31475.00822
vioscreen_vita_rae
2143.466781
vioscreen_vita_re
3603.1510270000003
vioscreen_vitb12
5.271479024
vioscreen_vitb6
2.8379996519999997
vioscreen_vitc
363.3850171
vioscreen_vitd
8.49076814
vioscreen_vitd2
0.0
vioscreen_vitd3
8.49076814
vioscreen_vitd_iu
339.6307256
vioscreen_vite_iu
19.61161842
vioscreen_vitk
452.8743579
vioscreen_water
2332.532363
vioscreen_weight
Not provided
vioscreen_wgrain
1.6312603680000002
vioscreen_whole_grain_servings
1.70671
vioscreen_xylitol
0.034109591
vioscreen_zinc
14.93030287
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)