American Gut Project; 10317.000028908
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633653
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:01Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028908
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Not provided
age cat
50s
age years
50.0
age_corrected
50.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28908
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1965.0
bmi
22.87
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Not provided
collection date
2015-05-28
collection month
May
collection season
Spring
collection time
08:10
collection_timestamp
2015-05-28 08:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
South Africa
country_residence
Not provided
csection
Not sure
deodorant_use
Not provided
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
71.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
1a2068fc2243bb0ed3847ee98ccef8ed12012d3ff4f82ef68b6d71096c3c2d7f85dc51b7083d00d5e6847a89548128ab05770f817fd96f12ebb91f8ae90706ec
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
40.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-74.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028908
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NJ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
286cffa1cb837282
teethbrushing_frequency
Daily
thyroid
Not provided
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.1480821580000002
vioscreen_a_cal
309.570762
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.002794574
vioscreen_addsugar
23.45197185
vioscreen_adsugtot
22.40649347
vioscreen_age
215.0
vioscreen_alanine
6.58772675
vioscreen_alcohol
30.86851991
vioscreen_alcohol_servings
2.1480799999999998
vioscreen_alphacar
103.65131640000001
vioscreen_alphtoce
10.73767123
vioscreen_alphtoco
9.858902772
vioscreen_arginine
7.093643648
vioscreen_ash
31.42246361
vioscreen_aspartam
0.0
vioscreen_aspartic
11.58827456
vioscreen_avcarb
82.74259953
vioscreen_bcodeid
Not provided
vioscreen_betacar
4113.301027
vioscreen_betacryp
54.13604987
vioscreen_betaine
96.04952911
vioscreen_betatoco
0.14419178400000002
vioscreen_biochana
0.0046575340000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
563.2742295
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.08682
vioscreen_calcium_servings
4.46137
vioscreen_calories
2658.183048
vioscreen_carbo
103.6876177
vioscreen_cholest
941.4749144
vioscreen_choline
860.0406677999999
vioscreen_clac9t11
0.316274
vioscreen_clat10c12
0.068438355
vioscreen_copper
3.06575309
vioscreen_coumest
0.35479452100000003
vioscreen_cystine
1.5446302440000002
vioscreen_d_cheese
1.867013759
vioscreen_d_milk
0.219808207
vioscreen_d_tot_soym
2.086821924
vioscreen_d_total
2.086821924
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.39156163899999996
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.611068433
vioscreen_discfat_oil
19.72772635
vioscreen_discfat_sol
100.3374037
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.017178081
vioscreen_f_nj_citmlb
0.000465753
vioscreen_f_nj_other
0.807561671
vioscreen_f_nj_total
0.8080274609999999
vioscreen_f_other
0.807561671
vioscreen_f_total
0.824739723
vioscreen_fat
171.573277
vioscreen_fiber
20.94490315
vioscreen_fibh2o
9.825013378
vioscreen_fibinso
11.2535076
vioscreen_finished
5/27/15
vioscreen_fish_servings
2.40346
vioscreen_fol_deqv
481.34940070000005
vioscreen_fol_nat
480.59571919999996
vioscreen_fol_syn
0.44301369
vioscreen_formontn
0.0000822
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
1.6
vioscreen_fructose
2.332794608
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.120520553
vioscreen_g_total
0.120520553
vioscreen_g_whl
0.0
vioscreen_galactos
0.199452063
vioscreen_gammtoco
8.082685413
vioscreen_gender
false
vioscreen_genistn
0.14109589
vioscreen_glac
33.20698844
vioscreen_gltc
34.3715914
vioscreen_glucose
4.868137307
vioscreen_glutamic
21.36104185
vioscreen_glycine
5.702903601
vioscreen_glycitn
0.002767123
vioscreen_grams
5839.632192
vioscreen_hei2010_dairy
6.0
vioscreen_hei2010_empty_calories
6.7
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
1.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
46.4
vioscreen_hei2010_sea_foods_plant_protiens
3.7
vioscreen_hei2010_sodium
1.4
vioscreen_hei2010_veg
2.9
vioscreen_hei2010_whole_fruit
3.8
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
3.3
vioscreen_hei_fruit
1.9
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.0
vioscreen_hei_non_juice_frt
3.8
vioscreen_hei_oils
6.2
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
36.2
vioscreen_hei_sodium
1.2
vioscreen_hei_sol_fat_alc_add_sug
0.8
vioscreen_hei_veg
2.9
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.86063015
vioscreen_inositol
0.040273975
vioscreen_iron
11.75999973
vioscreen_isoleuc
6.319562017999999
vioscreen_isomalt
0.0
vioscreen_joules
11121.83836
vioscreen_juice_servings
0.033510000000000005
vioscreen_lactitol
0.0
vioscreen_lactose
5.350410691
vioscreen_legumes
0.0
vioscreen_leucine
10.37663006
vioscreen_line_gi
200.6552226
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2913.969863
vioscreen_lycopene
620.1403682
vioscreen_lysine
10.20832887
vioscreen_m_egg
2.02309587
vioscreen_m_fish_hi
0.99539728
vioscreen_m_fish_lo
0.37424659200000004
vioscreen_m_frank
0.653041098
vioscreen_m_meat
3.594575396
vioscreen_m_mpf
9.579287511
vioscreen_m_nutsd
0.217315068
vioscreen_m_organ
0.879835657
vioscreen_m_poult
3.082191781
vioscreen_m_soy
0.000191781
vioscreen_magnes
346.7542808
vioscreen_maltitol
0.0
vioscreen_maltose
1.59643839
vioscreen_mangan
2.605917902
vioscreen_mannitol
0.09600000300000001
vioscreen_methhis3
33.64471051
vioscreen_methion
3.285616104
vioscreen_mfa141
0.315561645
vioscreen_mfa161
4.479232663
vioscreen_mfa181
58.87013592
vioscreen_mfa201
0.621123348
vioscreen_mfa221
0.18202738300000001
vioscreen_mfatot
65.40593964
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.858902772
vioscreen_nccglbr
42.36438356
vioscreen_nccglgr
29.63668397
vioscreen_niacin
31.45477044
vioscreen_niacineq
55.23785852
vioscreen_nitrogen
20.90931346
vioscreen_non_fried_fish_servings
2.40346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.400520555
vioscreen_oxalic
197.09497
vioscreen_oxalicm
196.66999140000001
vioscreen_pantothe
12.12479532
vioscreen_pectins
4.2369592119999995
vioscreen_pfa182
14.78342519
vioscreen_pfa183
1.7772328830000002
vioscreen_pfa184
0.04397260099999999
vioscreen_pfa204
0.49531505
vioscreen_pfa205
0.154520552
vioscreen_pfa225
0.07934247400000001
vioscreen_pfa226
0.345945196
vioscreen_pfatot
18.13443788
vioscreen_phenylal
5.576849114
vioscreen_phosphor
1996.438014
vioscreen_phytic
361.33886989999996
vioscreen_pinitol
0.000109589
vioscreen_potass
3809.143493
vioscreen_procdate
10/28/15
vioscreen_proline
7.496245585
vioscreen_protanim
117.6926905
vioscreen_protein
130.7607021
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
13.06851991
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
424.0
vioscreen_retinol
2439.038527
vioscreen_rgrain
0.021589041
vioscreen_ribofla
3.835890679
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.25586
vioscreen_satoco
0.0
vioscreen_selenium
147.4813463
vioscreen_serine
5.94386304
vioscreen_sfa100
1.720438416
vioscreen_sfa120
1.854821945
vioscreen_sfa140
7.71430129
vioscreen_sfa160
37.57312714
vioscreen_sfa170
0.247753425
vioscreen_sfa180
16.70701386
vioscreen_sfa200
0.156082195
vioscreen_sfa220
0.058246575999999994
vioscreen_sfa40
2.094876726
vioscreen_sfa60
1.165369906
vioscreen_sfa80
0.744684925
vioscreen_sfatot
71.35774829
vioscreen_sodium
4971.037329
vioscreen_sorbitol
0.042602738
vioscreen_srvid
18768.0
vioscreen_starch
5.71646578
vioscreen_started
5/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.68767123
vioscreen_sweet_servings
1.0
vioscreen_tagatose
4.601999946
vioscreen_tfa161t
0.350328775
vioscreen_tfa181t
3.177040748
vioscreen_tfa182t
0.825041052
vioscreen_tgrain
0.021589041
vioscreen_thiamin
1.181424828
vioscreen_threonin
5.283863308
vioscreen_time
14.0
vioscreen_totaltfa
4.474438477
vioscreen_totcla
0.382986283
vioscreen_totfolat
481.0387414
vioscreen_totsugar
34.82378264
vioscreen_tryptoph
1.429589175
vioscreen_tyrosine
4.728301584
vioscreen_user_id
18768.0
vioscreen_v_drkgr
0.571780855
vioscreen_v_orange
0.132136985
vioscreen_v_other
0.868657528
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.133452052
vioscreen_v_total
1.7060272630000002
vioscreen_valine
6.957260006
vioscreen_veg5_day
6.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.4
vioscreen_visit
1.0
vioscreen_vita_iu
15117.8589
vioscreen_vita_rae
2788.390411
vioscreen_vita_re
3137.737671
vioscreen_vitb12
17.78131421
vioscreen_vitb6
2.620438416
vioscreen_vitc
104.197271
vioscreen_vitd
12.41975332
vioscreen_vitd2
0.0
vioscreen_vitd3
12.41975332
vioscreen_vitd_iu
496.79013269999996
vioscreen_vite_iu
14.64994381
vioscreen_vitk
182.2648116
vioscreen_water
5392.188356000001
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.021260275
vioscreen_zinc
16.21997137
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never