American Gut Project; 10317.000033679
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634363
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033679
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
32.0
age_corrected
32.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033679
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1982.0
bmi
21.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-13
collection month
September
collection season
Fall
collection time
13:30
collection_timestamp
2015-09-13 13:30
consume_animal_products_abx
Not sure
contraceptive
Yes, I use the NuvaRing
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
6.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Never
host common name
human
host subject id
db9a12839e34a8c6d2060f6f98ce65c3101d3643fc15ecdbdaabb143553c6a28556f4a6d272484b6fbf4844349d38015aa2002f7a4814dcea93df94a7974eaec
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
1 year
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-75.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000033679
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NJ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a6f6fbb170519def
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.694082182
vioscreen_a_cal
83.64912243
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.091451734
vioscreen_addsugar
33.30816567
vioscreen_adsugtot
28.85822185
vioscreen_age
215.0
vioscreen_alanine
3.138739766
vioscreen_alcohol
10.39819135
vioscreen_alcohol_servings
0.69408
vioscreen_alphacar
425.43369010000004
vioscreen_alphtoce
8.727369836
vioscreen_alphtoco
7.81783765
vioscreen_arginine
3.604739673
vioscreen_ash
19.79983679
vioscreen_aspartam
0.0
vioscreen_aspartic
6.082739592
vioscreen_avcarb
144.1855522
vioscreen_bcodeid
Not provided
vioscreen_betacar
8244.392466
vioscreen_betacryp
124.04273329999998
vioscreen_betaine
103.391524
vioscreen_betatoco
0.244465784
vioscreen_biochana
0.0009315069999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
15.74624625
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.96877
vioscreen_calcium_servings
2.49044
vioscreen_calories
1441.3375
vioscreen_carbo
162.5935146
vioscreen_cholest
224.72921659999997
vioscreen_choline
288.7352312
vioscreen_clac9t11
0.07739726
vioscreen_clat10c12
0.016246574
vioscreen_copper
1.4020549619999998
vioscreen_coumest
0.0052602740000000005
vioscreen_cystine
0.735452145
vioscreen_d_cheese
0.471534248
vioscreen_d_milk
0.281041101
vioscreen_d_tot_soym
0.968767224
vioscreen_d_total
0.968767224
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
1.492794842
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.8692603540000001
vioscreen_discfat_oil
15.66096024
vioscreen_discfat_sol
26.88737158
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001616438
vioscreen_f_citmlb
0.6985753309999999
vioscreen_f_nj_citmlb
0.69032877
vioscreen_f_nj_other
0.843095921
vioscreen_f_nj_total
1.533451781
vioscreen_f_other
0.843095921
vioscreen_f_total
1.541725807
vioscreen_fat
56.16929045
vioscreen_fiber
18.40295511
vioscreen_fibh2o
4.731260368
vioscreen_fibinso
13.67953366
vioscreen_finished
9/7/15
vioscreen_fish_servings
4.73635
vioscreen_fol_deqv
295.308262
vioscreen_fol_nat
220.6071276
vioscreen_fol_syn
43.89783283
vioscreen_formontn
0.000876712
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.17899
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
13.67553377
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.00693142
vioscreen_g_total
3.221315483
vioscreen_g_whl
1.214383562
vioscreen_galactos
0.46016440200000003
vioscreen_gammtoco
7.929973111
vioscreen_gender
false
vioscreen_genistn
1.710876799
vioscreen_glac
67.03503853
vioscreen_gltc
73.74979666
vioscreen_glucose
14.66769986
vioscreen_glutamic
11.52301343
vioscreen_glycine
2.7081369060000005
vioscreen_glycitn
0.248575352
vioscreen_grams
4542.203767
vioscreen_hei2010_dairy
5.2
vioscreen_hei2010_empty_calories
16.1
vioscreen_hei2010_fatty_acids
3.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.1
vioscreen_hei_sat_fat
5.0
vioscreen_hei_score
68.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
12.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.8
vioscreen_height
Not provided
vioscreen_histidin
1.666493204
vioscreen_inositol
0.12164382900000001
vioscreen_iron
7.982849288
vioscreen_isoleuc
2.7946847580000003
vioscreen_isomalt
0.0
vioscreen_joules
6030.556164
vioscreen_juice_servings
0.01655
vioscreen_lactitol
0.0
vioscreen_lactose
9.068602847000001
vioscreen_legumes
0.009342465
vioscreen_leucine
4.882958984
vioscreen_line_gi
310.00535099999996
vioscreen_low_fat_dairy_serving
0.26375
vioscreen_lutzeax
6473.065753
vioscreen_lycopene
5183.160274
vioscreen_lysine
4.453753746
vioscreen_m_egg
0.328246569
vioscreen_m_fish_hi
1.171972656
vioscreen_m_fish_lo
1.527150779
vioscreen_m_frank
0.32435616300000003
vioscreen_m_meat
0.710054748
vioscreen_m_mpf
4.092109241
vioscreen_m_nutsd
0.625698644
vioscreen_m_organ
0.0
vioscreen_m_poult
0.358575356
vioscreen_m_soy
0.138191777
vioscreen_magnes
295.27403680000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.50350693
vioscreen_mangan
3.275560855
vioscreen_mannitol
0.167972596
vioscreen_methhis3
12.55427413
vioscreen_methion
1.4820822519999999
vioscreen_mfa141
0.07002739599999999
vioscreen_mfa161
0.93616425
vioscreen_mfa181
18.59468375
vioscreen_mfa201
0.32904113399999996
vioscreen_mfa221
0.188575347
vioscreen_mfatot
20.31485044
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.81783765
vioscreen_nccglbr
109.0604345
vioscreen_nccglgr
76.29002569
vioscreen_niacin
15.27032989
vioscreen_niacineq
26.85416578
vioscreen_nitrogen
10.09980937
vioscreen_non_fried_fish_servings
4.30885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.89695861
vioscreen_oxalic
229.2940068
vioscreen_oxalicm
230.83107880000003
vioscreen_pantothe
4.109754253999999
vioscreen_pectins
3.3093696489999997
vioscreen_pfa182
9.728219312
vioscreen_pfa183
1.267671183
vioscreen_pfa184
0.044767124000000005
vioscreen_pfa204
0.096767133
vioscreen_pfa205
0.176465743
vioscreen_pfa225
0.061479454
vioscreen_pfa226
0.347561625
vioscreen_pfatot
11.81145254
vioscreen_phenylal
2.721726175
vioscreen_phosphor
1043.2882710000001
vioscreen_phytic
462.3994863
vioscreen_pinitol
0.010958903999999998
vioscreen_potass
2535.886644
vioscreen_procdate
10/28/15
vioscreen_proline
3.713807992
vioscreen_protanim
42.69744756
vioscreen_protein
62.31122646
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.61016428
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
109.0
vioscreen_retinol
248.51515409999996
vioscreen_rgrain
1.70619164
vioscreen_ribofla
1.142164424
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.5763
vioscreen_satoco
0.0
vioscreen_selenium
95.11068065
vioscreen_serine
2.871917808
vioscreen_sfa100
0.446767102
vioscreen_sfa120
0.668821904
vioscreen_sfa140
2.027068507
vioscreen_sfa160
10.07610833
vioscreen_sfa170
0.098410964
vioscreen_sfa180
4.079671447
vioscreen_sfa200
0.11887672099999999
vioscreen_sfa220
0.14005479199999998
vioscreen_sfa40
0.539287661
vioscreen_sfa60
0.29723289199999997
vioscreen_sfa80
0.21791781100000002
vioscreen_sfatot
19.03197506
vioscreen_sodium
3630.741781
vioscreen_sorbitol
0.488356123
vioscreen_srvid
20651.0
vioscreen_starch
56.88112158
vioscreen_started
9/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.51695741
vioscreen_sweet_servings
0.90774
vioscreen_tagatose
2.189342426
vioscreen_tfa161t
0.037315068
vioscreen_tfa181t
1.272356174
vioscreen_tfa182t
0.268547915
vioscreen_tgrain
3.2767678460000003
vioscreen_thiamin
0.908164581
vioscreen_threonin
2.439945252
vioscreen_time
44.0
vioscreen_totaltfa
1.610794694
vioscreen_totcla
0.094273972
vioscreen_totfolat
264.50496580000004
vioscreen_totsugar
72.19301691
vioscreen_tryptoph
0.695643887
vioscreen_tyrosine
2.18630137
vioscreen_user_id
20651.0
vioscreen_v_drkgr
0.472520551
vioscreen_v_orange
0.246739719
vioscreen_v_other
0.9450960340000001
vioscreen_v_potato
0.210356161
vioscreen_v_starcy
0.129205479
vioscreen_v_tomato
0.31545207399999997
vioscreen_v_total
2.319452155
vioscreen_valine
3.227808286
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
15028.10959
vioscreen_vita_rae
958.4434932
vioscreen_vita_re
1668.370548
vioscreen_vitb12
4.320931213
vioscreen_vitb6
1.6321646909999998
vioscreen_vitc
107.79226240000001
vioscreen_vitd
7.380930945
vioscreen_vitd2
0.000849315
vioscreen_vitd3
7.380136317000001
vioscreen_vitd_iu
295.2372378
vioscreen_vite_iu
11.65898571
vioscreen_vitk
274.1041096
vioscreen_water
4252.004452
vioscreen_weight
Not provided
vioscreen_wgrain
1.5705753690000002
vioscreen_whole_grain_servings
1.21438
vioscreen_xylitol
0.035726035
vioscreen_zinc
8.639122699
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)