10317.000028802; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633640
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:00Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028802
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28802
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
24.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-06
collection month
June
collection season
Summer
collection time
08:25
collection_timestamp
2015-06-06 08:25
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Jamaica
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
93.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not provided
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
df8f4b81d542eb33c8194be6a49b240d7df26c6086b6465e1e76b933ebb512f2bdccaa4db909b8477ce0bf5e54cb211f264fc34f4b866f040c9c9c996edbfff3
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.9
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028802
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
2b439551a604ee54
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.36243838
vioscreen_a_cal
167.9341931
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.7021364
vioscreen_addsugar
55.38802439999999
vioscreen_adsugtot
50.83120719
vioscreen_age
215.0
vioscreen_alanine
3.532246629
vioscreen_alcohol
21.00243739
vioscreen_alcohol_servings
1.3624399999999999
vioscreen_alphacar
2332.7417809999997
vioscreen_alphtoce
24.60814159
vioscreen_alphtoco
20.82158872
vioscreen_arginine
5.694548641
vioscreen_ash
16.64150792
vioscreen_aspartam
0.0
vioscreen_aspartic
7.599780608
vioscreen_avcarb
151.0043878
vioscreen_bcodeid
Not provided
vioscreen_betacar
11115.17534
vioscreen_betacryp
22.89693119
vioscreen_betaine
40.84699005
vioscreen_betatoco
0.7421369999999999
vioscreen_biochana
0.005972602
vioscreen_bmi
Not provided
vioscreen_caffeine
101.9336152
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.09027
vioscreen_calcium_servings
2.78241
vioscreen_calories
2007.054281
vioscreen_carbo
174.4814105
vioscreen_cholest
193.5774615
vioscreen_choline
336.2647046
vioscreen_clac9t11
0.028739723
vioscreen_clat10c12
0.01389041
vioscreen_copper
1.686739652
vioscreen_coumest
0.072356164
vioscreen_cystine
0.977260307
vioscreen_d_cheese
0.077726024
vioscreen_d_milk
0.2528767
vioscreen_d_tot_soym
1.090274006
vioscreen_d_total
1.090274006
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
1.465452095
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.5234791380000001
vioscreen_discfat_oil
59.11633134
vioscreen_discfat_sol
16.22663073
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001534247
vioscreen_f_citmlb
0.6157533829999999
vioscreen_f_nj_citmlb
0.615506818
vioscreen_f_nj_other
0.546410924
vioscreen_f_nj_total
1.161917741
vioscreen_f_other
0.546410924
vioscreen_f_total
1.162164307
vioscreen_fat
104.9164384
vioscreen_fiber
23.35238121
vioscreen_fibh2o
4.839972844
vioscreen_fibinso
18.6148491
vioscreen_finished
6/4/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
432.8731164
vioscreen_fol_nat
308.5201627
vioscreen_fol_syn
73.13099315
vioscreen_formontn
0.004630137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.3
vioscreen_fructose
15.40131368
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.534712324
vioscreen_g_total
1.049342493
vioscreen_g_whl
0.514657551
vioscreen_galactos
1.020712238
vioscreen_gammtoco
12.36662966
vioscreen_gender
false
vioscreen_genistn
2.330822085
vioscreen_glac
52.93581978
vioscreen_gltc
58.17199807
vioscreen_glucose
18.65575503
vioscreen_glutamic
14.00084948
vioscreen_glycine
3.604027986
vioscreen_glycitn
0.36520548799999997
vioscreen_grams
2014.989384
vioscreen_hei2010_dairy
4.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
9.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.6
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.5
vioscreen_hei_score
74.0
vioscreen_hei_sodium
7.5
vioscreen_hei_sol_fat_alc_add_sug
16.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.9
vioscreen_height
Not provided
vioscreen_histidin
1.9751779219999999
vioscreen_inositol
0.213123311
vioscreen_iron
11.27961927
vioscreen_isoleuc
3.2548493689999995
vioscreen_isomalt
0.0
vioscreen_joules
8397.515753
vioscreen_juice_servings
0.00047000000000000004
vioscreen_lactitol
0.0
vioscreen_lactose
14.21586312
vioscreen_legumes
0.0
vioscreen_leucine
5.611726107999999
vioscreen_line_gi
297.85357450000004
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
11464.599320000001
vioscreen_lycopene
1271.658048
vioscreen_lysine
4.593753344
vioscreen_m_egg
0.5884109710000001
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.16926027100000002
vioscreen_m_meat
0.620410951
vioscreen_m_mpf
2.8310684
vioscreen_m_nutsd
6.786411066
vioscreen_m_organ
0.0
vioscreen_m_poult
2.041369796
vioscreen_m_soy
0.056821917
vioscreen_magnes
425.39554789999994
vioscreen_maltitol
0.0
vioscreen_maltose
1.8966300230000002
vioscreen_mangan
4.200986596
vioscreen_mannitol
0.230246578
vioscreen_methhis3
10.81388993
vioscreen_methion
1.54139722
vioscreen_mfa141
0.02852055
vioscreen_mfa161
1.014739572
vioscreen_mfa181
47.14997325
vioscreen_mfa201
0.649671246
vioscreen_mfa221
0.019452055
vioscreen_mfatot
49.203125
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
18.99134204
vioscreen_nccglbr
102.4075342
vioscreen_nccglgr
71.63480308
vioscreen_niacin
24.20293236
vioscreen_niacineq
37.63670805
vioscreen_nitrogen
12.82120612
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.113835583
vioscreen_oxalic
407.2952483
vioscreen_oxalicm
494.90847599999995
vioscreen_pantothe
5.922766615
vioscreen_pectins
4.961369595
vioscreen_pfa182
22.18895816
vioscreen_pfa183
1.049753351
vioscreen_pfa184
0.0015616439999999998
vioscreen_pfa204
0.126109596
vioscreen_pfa205
0.011068493
vioscreen_pfa225
0.015315068999999999
vioscreen_pfa226
0.036493152
vioscreen_pfatot
23.4981646
vioscreen_phenylal
3.484054607
vioscreen_phosphor
1285.31875
vioscreen_phytic
877.3786815
vioscreen_pinitol
0.00630137
vioscreen_potass
3030.257877
vioscreen_procdate
10/28/15
vioscreen_proline
4.593287471
vioscreen_protanim
37.5210991
vioscreen_protein
76.09553189
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.56103917
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
411.0
vioscreen_retinol
160.25643190000002
vioscreen_rgrain
0.66876714
vioscreen_ribofla
1.688383254
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.20115
vioscreen_satoco
4.067260408
vioscreen_selenium
121.82723670000001
vioscreen_serine
3.8297804739999997
vioscreen_sfa100
0.202520564
vioscreen_sfa120
0.720904123
vioscreen_sfa140
1.165534116
vioscreen_sfa160
14.71909514
vioscreen_sfa170
0.024794517999999998
vioscreen_sfa180
6.421945232000001
vioscreen_sfa200
0.554904091
vioscreen_sfa220
1.026410915
vioscreen_sfa40
0.216684921
vioscreen_sfa60
0.08347945
vioscreen_sfa80
0.108000005
vioscreen_sfatot
25.82164223
vioscreen_sodium
2330.545205
vioscreen_sorbitol
0.935178072
vioscreen_srvid
18829.0
vioscreen_starch
25.55177922
vioscreen_started
6/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
51.87518194
vioscreen_sweet_servings
1.06575
vioscreen_tagatose
9.800575235
vioscreen_tfa161t
0.013917811
vioscreen_tfa181t
0.59646573
vioscreen_tfa182t
0.40424654200000004
vioscreen_tgrain
1.322657588
vioscreen_thiamin
1.046383542
vioscreen_threonin
2.769671213
vioscreen_time
19.0
vioscreen_totaltfa
1.02569856
vioscreen_totcla
0.042657533
vioscreen_totfolat
381.6511558
vioscreen_totsugar
103.72854240000001
vioscreen_tryptoph
0.8068218070000001
vioscreen_tyrosine
2.731096158
vioscreen_user_id
18829.0
vioscreen_v_drkgr
0.771808196
vioscreen_v_orange
0.409616465
vioscreen_v_other
0.881589121
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.078054794
vioscreen_v_tomato
0.086904102
vioscreen_v_total
2.227945239
vioscreen_valine
3.7832058010000003
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.5
vioscreen_visit
1.0
vioscreen_vita_iu
21020.50959
vioscreen_vita_rae
1184.6732880000002
vioscreen_vita_re
2209.089726
vioscreen_vitb12
2.982493111
vioscreen_vitb6
2.081315048
vioscreen_vitc
90.58371147
vioscreen_vitd
1.574164404
vioscreen_vitd2
0.21389041
vioscreen_vitd3
1.360301397
vioscreen_vitd_iu
62.96657615
vioscreen_vite_iu
32.40137254
vioscreen_vitk
521.3166524000001
vioscreen_water
1632.902568
vioscreen_weight
Not provided
vioscreen_wgrain
0.653863024
vioscreen_whole_grain_servings
0.51466
vioscreen_xylitol
0.068493145
vioscreen_zinc
11.34537136
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)