American Gut Project; 10317.000028463
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633604
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028463
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28463
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1953.0
bmi
22.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-15
collection month
June
collection season
Summer
collection time
08:00
collection_timestamp
2015-06-15 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
131.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
166.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
77c4f560134d714cf43d277f0de502a64871153d3b66f7b15aa6afa6dd9f20157571396bcea92dc2aa7566f93ba4583a7bdc5552a15f8a4dac5ed35c66cbb471
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
0.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Not provided
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028463
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
9cec0036bc62e8ad
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.301232868
vioscreen_a_cal
34.09251926
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.59887628
vioscreen_addsugar
63.82591503
vioscreen_adsugtot
57.67614512
vioscreen_age
215.0
vioscreen_alanine
4.814931373
vioscreen_alcohol
4.53002729
vioscreen_alcohol_servings
0.30123
vioscreen_alphacar
1728.398973
vioscreen_alphtoce
13.16961954
vioscreen_alphtoco
10.68671072
vioscreen_arginine
5.503725652999999
vioscreen_ash
25.48257973
vioscreen_aspartam
0.0
vioscreen_aspartic
9.733588399
vioscreen_avcarb
264.3986729
vioscreen_bcodeid
Not provided
vioscreen_betacar
6351.472603
vioscreen_betacryp
69.00354238
vioscreen_betaine
206.0993793
vioscreen_betatoco
0.545150673
vioscreen_biochana
0.014082193
vioscreen_bmi
Not provided
vioscreen_caffeine
251.57014130000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.2739700000000003
vioscreen_calcium_servings
3.76425
vioscreen_calories
2439.8335620000003
vioscreen_carbo
290.5103596
vioscreen_cholest
272.9651755
vioscreen_choline
441.8072346
vioscreen_clac9t11
0.13400001
vioscreen_clat10c12
0.027205483
vioscreen_copper
1.80416427
vioscreen_coumest
0.060383564
vioscreen_cystine
1.290657608
vioscreen_d_cheese
0.312301385
vioscreen_d_milk
1.458794414
vioscreen_d_tot_soym
2.2739726030000003
vioscreen_d_total
2.2739726030000003
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
2.755781116
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.83421982
vioscreen_discfat_oil
40.64019692
vioscreen_discfat_sol
37.70366545
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.459780842
vioscreen_f_nj_citmlb
0.45504112799999996
vioscreen_f_nj_other
0.20386300300000001
vioscreen_f_nj_total
0.658904151
vioscreen_f_other
0.20386300300000001
vioscreen_f_total
0.663643866
vioscreen_fat
97.57579195
vioscreen_fiber
26.09126445
vioscreen_fibh2o
7.388110017000001
vioscreen_fibinso
18.6799711
vioscreen_finished
6/11/15
vioscreen_fish_servings
2.5398099999999997
vioscreen_fol_deqv
496.42906680000004
vioscreen_fol_nat
309.6794307
vioscreen_fol_syn
109.7781999
vioscreen_formontn
0.001945206
vioscreen_fried_fish_servings
0.21385
vioscreen_fried_food_servings
0.11507
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.3
vioscreen_fructose
18.21761826
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
4.026054487
vioscreen_g_total
6.772685012
vioscreen_g_whl
2.746575175
vioscreen_galactos
0.724273932
vioscreen_gammtoco
22.07416658
vioscreen_gender
false
vioscreen_genistn
4.099068921000001
vioscreen_glac
136.94912240000002
vioscreen_gltc
149.6726991
vioscreen_glucose
19.26898411
vioscreen_glutamic
19.55449353
vioscreen_glycine
4.224766561
vioscreen_glycitn
0.54991777
vioscreen_grams
3597.5989729999997
vioscreen_hei2010_dairy
7.2
vioscreen_hei2010_empty_calories
17.2
vioscreen_hei2010_fatty_acids
6.9
vioscreen_hei2010_fruit
1.7
vioscreen_hei2010_greens_beans
3.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.4
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
3.4
vioscreen_hei_fruit
1.7
vioscreen_hei_grains
4.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.2
vioscreen_hei_non_juice_frt
3.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.9
vioscreen_hei_score
73.2
vioscreen_hei_sodium
0.3
vioscreen_hei_sol_fat_alc_add_sug
16.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
2.786821924
vioscreen_inositol
0.10336987199999999
vioscreen_iron
14.88029886
vioscreen_isoleuc
4.590904591
vioscreen_isomalt
0.0
vioscreen_joules
10208.26233
vioscreen_juice_servings
0.00951
vioscreen_lactitol
0.0
vioscreen_lactose
26.31383508
vioscreen_legumes
0.086767129
vioscreen_leucine
7.9699707029999995
vioscreen_line_gi
636.3100598999999
vioscreen_low_fat_dairy_serving
1.75227
vioscreen_lutzeax
4595.313014
vioscreen_lycopene
4818.921918
vioscreen_lysine
7.1070680379999995
vioscreen_m_egg
0.415041069
vioscreen_m_fish_hi
0.793150685
vioscreen_m_fish_lo
0.6541370129999999
vioscreen_m_frank
0.661260276
vioscreen_m_meat
2.228246736
vioscreen_m_mpf
5.588274227
vioscreen_m_nutsd
1.1062739959999999
vioscreen_m_organ
0.0
vioscreen_m_poult
1.251506816
vioscreen_m_soy
0.099643833
vioscreen_magnes
457.5657962
vioscreen_maltitol
0.0
vioscreen_maltose
2.819041297
vioscreen_mangan
6.39621883
vioscreen_mannitol
0.231424598
vioscreen_methhis3
20.98399909
vioscreen_methion
2.323835817
vioscreen_mfa141
0.135287674
vioscreen_mfa161
1.278027511
vioscreen_mfa181
29.79202965
vioscreen_mfa201
0.40213698299999995
vioscreen_mfa221
0.14224657
vioscreen_mfatot
31.97912564
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.68671072
vioscreen_nccglbr
212.82583480000002
vioscreen_nccglgr
148.872988
vioscreen_niacin
27.35610552
vioscreen_niacineq
45.714597600000005
vioscreen_nitrogen
16.65435707
vioscreen_non_fried_fish_servings
2.32596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.127260475
vioscreen_oxalic
353.58621580000005
vioscreen_oxalicm
275.853018
vioscreen_pantothe
6.622931828
vioscreen_pectins
3.6724659539999998
vioscreen_pfa182
25.34599743
vioscreen_pfa183
2.70457563
vioscreen_pfa184
0.029671232999999998
vioscreen_pfa204
0.142383565
vioscreen_pfa205
0.10520547300000001
vioscreen_pfa225
0.053534249000000006
vioscreen_pfa226
0.235397255
vioscreen_pfatot
28.71603168
vioscreen_phenylal
4.549507037
vioscreen_phosphor
1738.760959
vioscreen_phytic
1001.0767119999999
vioscreen_pinitol
0.023095891
vioscreen_potass
4262.490068
vioscreen_procdate
10/28/15
vioscreen_proline
6.491205586
vioscreen_protanim
66.8406464
vioscreen_protein
102.28137840000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.43339576
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
395.0
vioscreen_retinol
410.59366439999997
vioscreen_rgrain
3.7289861810000002
vioscreen_ribofla
2.348904043
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.81307
vioscreen_satoco
0.0
vioscreen_selenium
159.2980843
vioscreen_serine
4.79956155
vioscreen_sfa100
0.541671209
vioscreen_sfa120
1.2053424990000001
vioscreen_sfa140
2.359671313
vioscreen_sfa160
15.77246629
vioscreen_sfa170
0.151452051
vioscreen_sfa180
6.782054661
vioscreen_sfa200
0.23545204100000003
vioscreen_sfa220
0.294958956
vioscreen_sfa40
0.524767147
vioscreen_sfa60
0.312465783
vioscreen_sfa80
0.293315062
vioscreen_sfatot
28.89556132
vioscreen_sodium
4810.276712
vioscreen_sorbitol
0.325342487
vioscreen_srvid
18866.0
vioscreen_starch
134.5678831
vioscreen_started
6/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.41687714
vioscreen_sweet_servings
1.2614100000000001
vioscreen_tagatose
4.237479598999999
vioscreen_tfa161t
0.063808216
vioscreen_tfa181t
1.871260301
vioscreen_tfa182t
0.43421919299999995
vioscreen_tgrain
6.78293156
vioscreen_thiamin
1.707643943
vioscreen_threonin
3.9618906519999997
vioscreen_time
36.0
vioscreen_totaltfa
2.465753257
vioscreen_totcla
0.162054799
vioscreen_totfolat
419.456464
vioscreen_totsugar
112.075503
vioscreen_tryptoph
1.1019999459999998
vioscreen_tyrosine
3.5721097760000005
vioscreen_user_id
18866.0
vioscreen_v_drkgr
0.257150687
vioscreen_v_orange
0.323753399
vioscreen_v_other
0.9212603009999999
vioscreen_v_potato
1.763369709
vioscreen_v_starcy
0.117424659
vioscreen_v_tomato
0.280054798
vioscreen_v_total
3.66298594
vioscreen_valine
5.379425299999999
vioscreen_veg5_day
3.8
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
7.3
vioscreen_visit
1.0
vioscreen_vita_iu
13450.75753
vioscreen_vita_rae
1014.7744859999999
vioscreen_vita_re
1618.955479
vioscreen_vitb12
5.844575396000001
vioscreen_vitb6
2.505835295
vioscreen_vitc
100.15131640000001
vioscreen_vitd
9.625561858
vioscreen_vitd2
0.001123288
vioscreen_vitd3
9.624438142
vioscreen_vitd_iu
385.0224743
vioscreen_vite_iu
15.92994703
vioscreen_vitk
213.9288741
vioscreen_water
3105.6777399999996
vioscreen_weight
Not provided
vioscreen_wgrain
3.053945045
vioscreen_whole_grain_servings
2.74658
vioscreen_xylitol
0.032684935
vioscreen_zinc
14.13120853
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily