American Gut Project; 10317.000033796
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634373
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033796
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
20s
age years
22.0
age_corrected
22.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033796
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1993.0
bmi
24.3
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-16
collection month
September
collection season
Fall
collection time
21:17
collection_timestamp
2015-09-16 21:17
consume_animal_products_abx
Yes
contraceptive
Yes, I use an injected contraceptive (DMPA)
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
36.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Daily
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
d3058d7cff3992ae5739ba411ad301b05aa2508f9e5f3666bb4f9e2bb8732502e93579aad8b94963fe6911e418cf0257f433603f1e5ce98a33cf53fd9db6f83a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
Within the past month
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Daily
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Hispanic
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000033796
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
Less than 5 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Daily
survey_id
26b72aa021fef1ea
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.784137047
vioscreen_a_cal
83.97767551
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
23.48756154
vioscreen_addsugar
115.5717787
vioscreen_adsugtot
92.61763699
vioscreen_age
215.0
vioscreen_alanine
7.805616572000001
vioscreen_alcohol
11.44931507
vioscreen_alcohol_servings
0.78414
vioscreen_alphacar
3856.591781
vioscreen_alphtoce
26.70970141
vioscreen_alphtoco
18.53284461
vioscreen_arginine
8.469042300000002
vioscreen_ash
38.14463292
vioscreen_aspartam
0.0
vioscreen_aspartic
14.91863094
vioscreen_avcarb
348.53283389999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
10569.687670000001
vioscreen_betacryp
230.87054790000002
vioscreen_betaine
278.0133348
vioscreen_betatoco
0.565095875
vioscreen_biochana
0.005452055
vioscreen_bmi
Not provided
vioscreen_caffeine
283.21541099999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
6.5820300000000005
vioscreen_calcium_servings
9.57986
vioscreen_calories
3678.559589
vioscreen_carbo
380.6592894
vioscreen_cholest
507.9848031
vioscreen_choline
554.5160103
vioscreen_clac9t11
0.25986301
vioscreen_clat10c12
0.044849312
vioscreen_copper
1.920849275
vioscreen_coumest
0.198054797
vioscreen_cystine
1.9386029809999998
vioscreen_d_cheese
3.687972563
vioscreen_d_milk
2.8486575610000004
vioscreen_d_tot_soym
6.582027906
vioscreen_d_total
6.582027906
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.006301838
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.186849181
vioscreen_discfat_oil
27.6359482
vioscreen_discfat_sol
103.7828874
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000136986
vioscreen_f_citmlb
0.13104109
vioscreen_f_nj_citmlb
0.12147945199999999
vioscreen_f_nj_other
0.34857537299999997
vioscreen_f_nj_total
0.47008219700000003
vioscreen_f_other
0.49145206799999996
vioscreen_f_total
0.622520551
vioscreen_fat
159.42701200000002
vioscreen_fiber
31.76911387
vioscreen_fibh2o
12.17400203
vioscreen_fibinso
19.53054768
vioscreen_finished
9/15/15
vioscreen_fish_servings
3.62846
vioscreen_fol_deqv
1450.9875
vioscreen_fol_nat
263.5436002
vioscreen_fol_syn
698.4527397
vioscreen_formontn
0.000986301
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.19178
vioscreen_frt5_day
0.7
vioscreen_frtsumm
1.2
vioscreen_fructose
18.61676477
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
7.331807845
vioscreen_g_total
8.341532668
vioscreen_g_whl
1.009725994
vioscreen_galactos
0.38194521600000003
vioscreen_gammtoco
17.61303644
vioscreen_gender
false
vioscreen_genistn
6.389013672000001
vioscreen_glac
166.472988
vioscreen_gltc
180.1346747
vioscreen_glucose
21.72320206
vioscreen_glutamic
36.31841556
vioscreen_glycine
6.597123154
vioscreen_glycitn
1.009616465
vioscreen_grams
4549.346918
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
9.0
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
0.6
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.2
vioscreen_hei2010_score
48.2
vioscreen_hei2010_sea_foods_plant_protiens
4.5
vioscreen_hei2010_sodium
2.0
vioscreen_hei2010_veg
3.4
vioscreen_hei2010_whole_fruit
1.6
vioscreen_hei2010_whole_grains
1.8
vioscreen_hei_drk_g_org_veg_leg
2.7
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
1.6
vioscreen_hei_oils
6.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
49.1
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
7.7
vioscreen_hei_veg
3.4
vioscreen_hei_whl_grains
0.9
vioscreen_height
Not provided
vioscreen_histidin
5.048877288
vioscreen_inositol
0.06887671599999999
vioscreen_iron
32.36042113
vioscreen_isoleuc
8.443808861
vioscreen_isomalt
0.0
vioscreen_joules
15391.08493
vioscreen_juice_servings
0.30488000000000004
vioscreen_lactitol
0.0
vioscreen_lactose
40.65457513
vioscreen_legumes
0.029013699
vioscreen_leucine
14.46416551
vioscreen_line_gi
709.9148116
vioscreen_low_fat_dairy_serving
2.2341599999999997
vioscreen_lutzeax
1997.096404
vioscreen_lycopene
11703.64795
vioscreen_lysine
12.57347763
vioscreen_m_egg
0.15572602800000002
vioscreen_m_fish_hi
1.868219245
vioscreen_m_fish_lo
0.200849308
vioscreen_m_frank
0.957616435
vioscreen_m_meat
2.102109475
vioscreen_m_mpf
8.656355683
vioscreen_m_nutsd
0.42534246600000003
vioscreen_m_organ
0.0
vioscreen_m_poult
3.527616318
vioscreen_m_soy
0.169397265
vioscreen_magnes
498.7779966
vioscreen_maltitol
0.0
vioscreen_maltose
6.7200543129999994
vioscreen_mangan
4.143288139
vioscreen_mannitol
0.58594515
vioscreen_methhis3
31.86465646
vioscreen_methion
4.116821624
vioscreen_mfa141
0.374027409
vioscreen_mfa161
2.946164317
vioscreen_mfa181
46.86441032
vioscreen_mfa201
0.675041094
vioscreen_mfa221
0.36224662
vioscreen_mfatot
51.90194777
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.49964416
vioscreen_nccglbr
294.4136772
vioscreen_nccglgr
205.96949909999998
vioscreen_niacin
52.5893247
vioscreen_niacineq
87.38500107
vioscreen_nitrogen
28.45860445
vioscreen_non_fried_fish_servings
3.62846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.316548052
vioscreen_oxalic
208.13005139999999
vioscreen_oxalicm
212.0610659
vioscreen_pantothe
12.04169922
vioscreen_pectins
2.665917802
vioscreen_pfa182
21.05868204
vioscreen_pfa183
2.256493137
vioscreen_pfa184
0.085616444
vioscreen_pfa204
0.276082203
vioscreen_pfa205
0.277232904
vioscreen_pfa225
0.145205479
vioscreen_pfa226
0.553643841
vioscreen_pfatot
24.90131903
vioscreen_phenylal
8.027288233
vioscreen_phosphor
3032.496575
vioscreen_phytic
1098.524486
vioscreen_pinitol
0.026794522
vioscreen_potass
4449.512329
vioscreen_procdate
10/28/15
vioscreen_proline
13.033669999999999
vioscreen_protanim
133.9477419
vioscreen_protein
176.3715218
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
42.42402611
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
76.0
vioscreen_retinol
1735.7488010000002
vioscreen_rgrain
7.312877247
vioscreen_ribofla
5.542684142000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.09271
vioscreen_satoco
11.18495893
vioscreen_selenium
246.5756421
vioscreen_serine
8.370986061
vioscreen_sfa100
2.004822112
vioscreen_sfa120
4.087562206
vioscreen_sfa140
8.961671929
vioscreen_sfa160
32.64101027
vioscreen_sfa170
0.332164378
vioscreen_sfa180
13.83882304
vioscreen_sfa200
0.188684939
vioscreen_sfa220
0.11591780199999999
vioscreen_sfa40
2.180438316
vioscreen_sfa60
1.174575346
vioscreen_sfa80
1.046438306
vioscreen_sfatot
68.11279431
vioscreen_sodium
6693.967807999999
vioscreen_sorbitol
0.35838359700000005
vioscreen_srvid
20752.0
vioscreen_starch
144.76704840000002
vioscreen_started
9/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
78.1557149
vioscreen_sweet_servings
1.54609
vioscreen_tagatose
1.57813704
vioscreen_tfa161t
0.214219185
vioscreen_tfa181t
4.74780842
vioscreen_tfa182t
1.066109686
vioscreen_tgrain
10.55419253
vioscreen_thiamin
3.567397862
vioscreen_threonin
6.9778628
vioscreen_time
99.0
vioscreen_totaltfa
6.14339817
vioscreen_totcla
0.306328802
vioscreen_totfolat
961.9964897
vioscreen_totsugar
166.7531785
vioscreen_tryptoph
2.0898905709999998
vioscreen_tyrosine
6.591560761
vioscreen_user_id
20752.0
vioscreen_v_drkgr
0.056410959000000004
vioscreen_v_orange
0.701835653
vioscreen_v_other
1.170136836
vioscreen_v_potato
0.27912328
vioscreen_v_starcy
0.063068494
vioscreen_v_tomato
0.45534245700000003
vioscreen_v_total
2.7259178680000002
vioscreen_valine
9.446410129
vioscreen_veg5_day
4.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
26813.92329
vioscreen_vita_rae
2786.866952
vioscreen_vita_re
3837.9859590000005
vioscreen_vitb12
17.46764368
vioscreen_vitb6
4.770766334
vioscreen_vitc
194.80635700000002
vioscreen_vitd
27.08295965
vioscreen_vitd2
0.589972635
vioscreen_vitd3
26.49306774
vioscreen_vitd_iu
1083.318386
vioscreen_vite_iu
31.26303778
vioscreen_vitk
95.02294521
vioscreen_water
3821.8256850000002
vioscreen_weight
Not provided
vioscreen_wgrain
3.2383013160000003
vioscreen_whole_grain_servings
1.00973
vioscreen_xylitol
0.028821922000000003
vioscreen_zinc
26.92047036
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
66.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily