American Gut Project; 10317.000023929
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633432
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023929
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23929
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
21.93
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/01/2015
collection month
June
collection season
Summer
collection time
06:55
collection_timestamp
2015-06-01 06:55
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
59.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e97a33e950acbc106335706c602123ded0f3bae2b9bee9a60d3dff07970480bb21d56d245e6eae73e1f5c9c49f4f2c2b11dc2e66c6a2e820dce856e71a5cb103
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
44.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-73.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Not provided
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023929
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VT
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
d4c589661b95addf
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.065917807
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.84761612
vioscreen_addsugar
69.26405179999999
vioscreen_adsugtot
61.22602205
vioscreen_age
215.0
vioscreen_alanine
3.129781812
vioscreen_alcohol
0.987506856
vioscreen_alcohol_servings
0.06592
vioscreen_alphacar
2816.380308
vioscreen_alphtoce
15.0775297
vioscreen_alphtoco
13.25947533
vioscreen_arginine
4.025506675
vioscreen_ash
22.18027745
vioscreen_aspartam
0.0
vioscreen_aspartic
6.783151621
vioscreen_avcarb
227.02196060000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
12794.89589
vioscreen_betacryp
120.53003000000001
vioscreen_betaine
117.64785959999999
vioscreen_betatoco
0.471890342
vioscreen_biochana
0.028876712000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
42.68123395
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.8599700000000001
vioscreen_calcium_servings
3.74131
vioscreen_calories
2234.691096
vioscreen_carbo
258.1535531
vioscreen_cholest
357.537714
vioscreen_choline
410.2288955
vioscreen_clac9t11
0.151972627
vioscreen_clat10c12
0.029808219
vioscreen_copper
1.645287751
vioscreen_coumest
0.021205481
vioscreen_cystine
0.898219111
vioscreen_d_cheese
0.7395616509999999
vioscreen_d_milk
0.74416437
vioscreen_d_tot_soym
1.859972643
vioscreen_d_total
1.859972643
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
4.365096586
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.030959372
vioscreen_discfat_oil
42.05097924
vioscreen_discfat_sol
47.20630351
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001260274
vioscreen_f_citmlb
0.796356118
vioscreen_f_nj_citmlb
0.687863034
vioscreen_f_nj_other
0.8538081759999999
vioscreen_f_nj_total
1.541753565
vioscreen_f_other
0.96123281
vioscreen_f_total
1.75764411
vioscreen_fat
107.8122217
vioscreen_fiber
31.08811537
vioscreen_fibh2o
7.1576706979999996
vioscreen_fibinso
23.899093
vioscreen_finished
5/30/15
vioscreen_fish_servings
0.23269
vioscreen_fol_deqv
436.2099743
vioscreen_fol_nat
341.2933005
vioscreen_fol_syn
55.80885060000001
vioscreen_formontn
0.004082192
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
2.3
vioscreen_frtsumm
3.5
vioscreen_fructose
24.0665213
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.515369656
vioscreen_g_total
4.2922189369999995
vioscreen_g_whl
1.7768218580000001
vioscreen_galactos
0.729671196
vioscreen_gammtoco
15.81356218
vioscreen_gender
false
vioscreen_genistn
6.355042006000001
vioscreen_glac
106.0699914
vioscreen_gltc
118.6606378
vioscreen_glucose
23.97715111
vioscreen_glutamic
13.85172437
vioscreen_glycine
2.634575329
vioscreen_glycitn
0.741397304
vioscreen_grams
2861.294178
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
13.8
vioscreen_hei2010_fatty_acids
4.0
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
3.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.5
vioscreen_hei_score
67.6
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
14.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.7
vioscreen_height
Not provided
vioscreen_histidin
1.835534334
vioscreen_inositol
0.19145211
vioscreen_iron
12.68947854
vioscreen_isoleuc
3.223890331
vioscreen_isomalt
0.0
vioscreen_joules
9349.946575
vioscreen_juice_servings
0.43181
vioscreen_lactitol
0.0
vioscreen_lactose
17.14838265
vioscreen_legumes
0.38734247899999996
vioscreen_leucine
5.611807042000001
vioscreen_line_gi
503.50380989999996
vioscreen_low_fat_dairy_serving
0.41871
vioscreen_lutzeax
5666.625685
vioscreen_lycopene
6941.995204999999
vioscreen_lysine
4.4598091019999995
vioscreen_m_egg
1.110109512
vioscreen_m_fish_hi
0.070493149
vioscreen_m_fish_lo
0.06210958900000001
vioscreen_m_frank
0.08572603
vioscreen_m_meat
0.564739698
vioscreen_m_mpf
0.9749040999999999
vioscreen_m_nutsd
1.7710685000000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.191835628
vioscreen_m_soy
0.341424644
vioscreen_magnes
362.8628425
vioscreen_maltitol
0.0
vioscreen_maltose
3.77523277
vioscreen_mangan
4.473313757
vioscreen_mannitol
0.590219033
vioscreen_methhis3
3.9864114
vioscreen_methion
1.454164437
vioscreen_mfa141
0.094684925
vioscreen_mfa161
1.260931731
vioscreen_mfa181
39.10016856
vioscreen_mfa201
0.386082229
vioscreen_mfa221
0.024054796
vioscreen_mfatot
41.12136398
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
13.25265277
vioscreen_nccglbr
175.82853169999998
vioscreen_nccglgr
122.9961152
vioscreen_niacin
15.59068788
vioscreen_niacineq
29.04871308
vioscreen_nitrogen
11.81739753
vioscreen_non_fried_fish_servings
0.23269
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.112959018
vioscreen_oxalic
257.80791949999997
vioscreen_oxalicm
241.57215330000002
vioscreen_pantothe
5.427479532
vioscreen_pectins
5.2358903439999995
vioscreen_pfa182
19.29175139
vioscreen_pfa183
2.034657267
vioscreen_pfa184
0.004520548
vioscreen_pfa204
0.11778082699999999
vioscreen_pfa205
0.018739725
vioscreen_pfa225
0.008931506
vioscreen_pfa226
0.046301369
vioscreen_pfatot
21.57860526
vioscreen_phenylal
3.37975305
vioscreen_phosphor
1419.856079
vioscreen_phytic
955.2789384
vioscreen_pinitol
0.041589042
vioscreen_potass
3096.5616440000003
vioscreen_procdate
10/28/15
vioscreen_proline
4.915862786
vioscreen_protanim
36.13024668
vioscreen_protein
72.22937179
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
36.09345034
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
419.0
vioscreen_retinol
461.6019692
vioscreen_rgrain
2.557205493
vioscreen_ribofla
1.8878357769999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.47096
vioscreen_satoco
0.014931506
vioscreen_selenium
101.0437393
vioscreen_serine
3.759973312
vioscreen_sfa100
0.9407945609999999
vioscreen_sfa120
1.3765752919999998
vioscreen_sfa140
3.637233118
vioscreen_sfa160
18.90967064
vioscreen_sfa170
0.18712329600000002
vioscreen_sfa180
8.075863522
vioscreen_sfa200
0.301698659
vioscreen_sfa220
0.364136955
vioscreen_sfa40
1.140328603
vioscreen_sfa60
0.649150608
vioscreen_sfa80
0.470986311
vioscreen_sfatot
36.50357984
vioscreen_sodium
4254.173629999999
vioscreen_sorbitol
1.015205446
vioscreen_srvid
18788.0
vioscreen_starch
78.64484161
vioscreen_started
5/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
57.83997218
vioscreen_sweet_servings
1.47758
vioscreen_tagatose
4.350054848
vioscreen_tfa161t
0.050109592
vioscreen_tfa181t
1.9307944940000001
vioscreen_tfa182t
0.462301385
vioscreen_tgrain
4.455561724
vioscreen_thiamin
1.328520307
vioscreen_threonin
2.764904451
vioscreen_time
58.0
vioscreen_totaltfa
2.513918022
vioscreen_totcla
0.182849309
vioscreen_totfolat
397.10184080000005
vioscreen_totsugar
128.6553938
vioscreen_tryptoph
0.808849345
vioscreen_tyrosine
2.59345168
vioscreen_user_id
18788.0
vioscreen_v_drkgr
0.49978081700000004
vioscreen_v_orange
0.736849265
vioscreen_v_other
0.78090419
vioscreen_v_potato
0.213808201
vioscreen_v_starcy
0.239232876
vioscreen_v_tomato
0.405315075
vioscreen_v_total
2.8759999730000003
vioscreen_valine
3.845397448
vioscreen_veg5_day
4.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
25311.57534
vioscreen_vita_rae
1650.216267
vioscreen_vita_re
2838.828253
vioscreen_vitb12
3.2830141669999997
vioscreen_vitb6
1.660520789
vioscreen_vitc
117.13128209999999
vioscreen_vitd
4.727479198
vioscreen_vitd2
0.000630137
vioscreen_vitd3
4.726876538
vioscreen_vitd_iu
189.0991679
vioscreen_vite_iu
19.77805945
vioscreen_vitk
286.6874572
vioscreen_water
2435.779966
vioscreen_weight
Not provided
vioscreen_wgrain
1.8984110790000002
vioscreen_whole_grain_servings
1.77682
vioscreen_xylitol
0.040520556
vioscreen_zinc
10.83134231
vitamin_b_supplement_frequency
Not provided
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)