10317.000031480; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634325
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031480
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000031480
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
36.34
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-15
collection month
September
collection season
Fall
collection time
09:00
collection_timestamp
2015-09-15 09:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
35.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Not provided
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
07c75e92815433c431649f264e65c245fdfc4b1b392ff027777129d50c5aeea358d6222a5d97e2d91defa8d38e3c514305564959a17791245490f6b31922ad1c
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
42.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031480
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Daily
sugary_sweets_frequency
Daily
survey_id
55fa16aaaf80c398
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.279342463
vioscreen_a_cal
34.70635435
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.755999838999999
vioscreen_addsugar
30.66816406
vioscreen_adsugtot
27.32087703
vioscreen_age
215.0
vioscreen_alanine
2.591068634
vioscreen_alcohol
4.350000334
vioscreen_alcohol_servings
0.27934000000000003
vioscreen_alphacar
837.5082192000001
vioscreen_alphtoce
8.259972308
vioscreen_alphtoco
7.294603489
vioscreen_arginine
3.041178162
vioscreen_ash
13.239920000000001
vioscreen_aspartam
242.95721319999998
vioscreen_aspartic
5.00158959
vioscreen_avcarb
157.42721530000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
3295.373288
vioscreen_betacryp
106.77630570000001
vioscreen_betaine
95.33913741
vioscreen_betatoco
0.29139724100000003
vioscreen_biochana
0.012273973
vioscreen_bmi
Not provided
vioscreen_caffeine
45.12925942
vioscreen_calcium
true
vioscreen_calcium_avg
214.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
1.38038
vioscreen_calcium_servings
2.53321
vioscreen_calories
1465.242123
vioscreen_carbo
172.35552230000002
vioscreen_cholest
199.5337757
vioscreen_choline
249.79351459999998
vioscreen_clac9t11
0.090191786
vioscreen_clat10c12
0.01819178
vioscreen_copper
0.879616348
vioscreen_coumest
0.051808219
vioscreen_cystine
0.67232875
vioscreen_d_cheese
0.722438363
vioscreen_d_milk
0.282164399
vioscreen_d_tot_soym
1.380383635
vioscreen_d_total
1.380383635
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.059013706
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.324246592
vioscreen_discfat_oil
21.21391669
vioscreen_discfat_sol
27.22838185
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000383562
vioscreen_f_citmlb
0.42706850700000004
vioscreen_f_nj_citmlb
0.10534246800000001
vioscreen_f_nj_other
0.33657533799999995
vioscreen_f_nj_total
0.441917775
vioscreen_f_other
0.927452025
vioscreen_f_total
1.3545204480000002
vioscreen_fat
61.05043878
vioscreen_fiber
14.92577724
vioscreen_fibh2o
3.2815339389999996
vioscreen_fibinso
11.71602767
vioscreen_finished
9/13/15
vioscreen_fish_servings
0.77462
vioscreen_fol_deqv
382.4038099
vioscreen_fol_nat
216.75845460000002
vioscreen_fol_syn
97.38245933
vioscreen_formontn
0.002493151
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
1.7
vioscreen_frtsumm
2.7
vioscreen_fructose
22.10633027
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.475287451
vioscreen_g_total
3.213780902
vioscreen_g_whl
0.738465777
vioscreen_galactos
0.595068485
vioscreen_gammtoco
8.360438517
vioscreen_gender
false
vioscreen_genistn
0.091232875
vioscreen_glac
68.78271083
vioscreen_gltc
73.90764127
vioscreen_glucose
20.05265679
vioscreen_glutamic
11.9062995
vioscreen_glycine
2.1659453930000003
vioscreen_glycitn
0.011753425
vioscreen_grams
1722.5089039999998
vioscreen_hei2010_dairy
7.2
vioscreen_hei2010_empty_calories
16.5
vioscreen_hei2010_fatty_acids
2.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.8
vioscreen_hei2010_whole_grains
3.4
vioscreen_hei_drk_g_org_veg_leg
4.5
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
9.6
vioscreen_hei_milk
7.2
vioscreen_hei_non_juice_frt
3.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.5
vioscreen_hei_score
71.4
vioscreen_hei_sodium
3.0
vioscreen_hei_sol_fat_alc_add_sug
15.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
1.5530962380000002
vioscreen_inositol
0.218273968
vioscreen_iron
8.930411895
vioscreen_isoleuc
2.591315283
vioscreen_isomalt
0.0
vioscreen_joules
6130.571918
vioscreen_juice_servings
1.8252099999999998
vioscreen_lactitol
0.0
vioscreen_lactose
12.08142525
vioscreen_legumes
0.01049315
vioscreen_leucine
4.560136518
vioscreen_line_gi
298.91894260000004
vioscreen_low_fat_dairy_serving
0.49073999999999995
vioscreen_lutzeax
2122.594692
vioscreen_lycopene
4699.232192
vioscreen_lysine
3.768329275
vioscreen_m_egg
0.330575332
vioscreen_m_fish_hi
0.09673973
vioscreen_m_fish_lo
0.34465752200000005
vioscreen_m_frank
0.19482191899999998
vioscreen_m_meat
1.00556164
vioscreen_m_mpf
2.0223012430000002
vioscreen_m_nutsd
1.116191707
vioscreen_m_organ
0.0
vioscreen_m_poult
0.380547928
vioscreen_m_soy
0.001753424
vioscreen_magnes
225.86089469999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.619972543
vioscreen_mangan
2.8597810089999998
vioscreen_mannitol
0.22194519
vioscreen_methhis3
7.718931935
vioscreen_methion
1.267561654
vioscreen_mfa141
0.088849316
vioscreen_mfa161
0.861917825
vioscreen_mfa181
21.19964148
vioscreen_mfa201
0.200739738
vioscreen_mfa221
0.004438356
vioscreen_mfatot
22.54194403
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
7.294603489
vioscreen_nccglbr
112.49983950000001
vioscreen_nccglgr
78.69137414
vioscreen_niacin
13.02641401
vioscreen_niacineq
23.19331657
vioscreen_nitrogen
9.431506849
vioscreen_non_fried_fish_servings
0.77462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.085780899
vioscreen_oxalic
113.1222068
vioscreen_oxalicm
123.8467466
vioscreen_pantothe
3.5165754760000003
vioscreen_pectins
2.557452142
vioscreen_pfa182
9.871699085
vioscreen_pfa183
1.020986144
vioscreen_pfa184
0.002410959
vioscreen_pfa204
0.067616439
vioscreen_pfa205
0.015835616
vioscreen_pfa225
0.011013697
vioscreen_pfa226
0.036273975
vioscreen_pfatot
11.07265959
vioscreen_phenylal
2.61493154
vioscreen_phosphor
1021.7227740000001
vioscreen_phytic
466.27855310000007
vioscreen_pinitol
0.001260274
vioscreen_potass
2193.293493
vioscreen_procdate
10/28/15
vioscreen_proline
4.259396739
vioscreen_protanim
36.31526381
vioscreen_protein
57.83455158
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.51487184
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
86.0
vioscreen_retinol
268.6775257
vioscreen_rgrain
2.653013465
vioscreen_ribofla
1.364684975
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.5561399999999999
vioscreen_satoco
0.0
vioscreen_selenium
92.35695634
vioscreen_serine
2.821205118
vioscreen_sfa100
0.5512328679999999
vioscreen_sfa120
0.69032877
vioscreen_sfa140
2.353150752
vioscreen_sfa160
11.52197266
vioscreen_sfa170
0.097041091
vioscreen_sfa180
4.656493472
vioscreen_sfa200
0.147780818
vioscreen_sfa220
0.198054797
vioscreen_sfa40
0.686958961
vioscreen_sfa60
0.368465727
vioscreen_sfa80
0.253726008
vioscreen_sfatot
21.89610847
vioscreen_sodium
2436.54024
vioscreen_sorbitol
0.39287673700000003
vioscreen_srvid
20713.0
vioscreen_starch
60.51788313
vioscreen_started
9/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.86630191
vioscreen_sweet_servings
0.7178100000000001
vioscreen_tagatose
3.708246602
vioscreen_tfa161t
0.045698630999999997
vioscreen_tfa181t
1.015917885
vioscreen_tfa182t
0.256191787
vioscreen_tgrain
3.35816433
vioscreen_thiamin
1.109178266
vioscreen_threonin
2.195424537
vioscreen_time
24.0
vioscreen_totaltfa
1.366493288
vioscreen_totcla
0.108849314
vioscreen_totfolat
314.14077480000003
vioscreen_totsugar
85.71044521
vioscreen_tryptoph
0.610657491
vioscreen_tyrosine
2.050465874
vioscreen_user_id
20713.0
vioscreen_v_drkgr
0.371342489
vioscreen_v_orange
0.155698625
vioscreen_v_other
0.81599999
vioscreen_v_potato
0.18383561199999998
vioscreen_v_starcy
0.235561632
vioscreen_v_tomato
0.456958886
vioscreen_v_total
2.219369549
vioscreen_valine
3.081507184
vioscreen_veg5_day
3.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.4
vioscreen_visit
1.0
vioscreen_vita_iu
7175.532877
vioscreen_vita_rae
582.6373716
vioscreen_vita_re
896.5973458999999
vioscreen_vitb12
2.7713153160000004
vioscreen_vitb6
1.248739833
vioscreen_vitc
94.28009418
vioscreen_vitd
3.03673982
vioscreen_vitd2
0.0016712329999999998
vioscreen_vitd3
3.035123141
vioscreen_vitd_iu
121.4695928
vioscreen_vite_iu
10.87709693
vioscreen_vitk
117.5380672
vioscreen_water
1434.759589
vioscreen_weight
Not provided
vioscreen_wgrain
0.705150698
vioscreen_whole_grain_servings
0.73847
vioscreen_xylitol
0.017643836
vioscreen_zinc
7.532821195
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
108.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)