American Gut Project; 10317.000001040
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632306
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-09T19:40:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000001040
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000001040
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
34.93
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-04-20
collection month
April
collection season
Spring
collection time
08:45
collection_timestamp
2015-04-20 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
New England
elevation
-12.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
31e4412a4e440f61f822e029db2b65c36f33e7a315d5e4f2409aea1dc778c9f96632d7e48d27ea4bf8bfae72870489070286d04519bd8efe325c63f550477b51
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
44.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not provided
longitude
-68.3
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000001040
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ME
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
89b4f69e9b20f4bd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.5010685330000002
vioscreen_addsugar
7.346932524
vioscreen_adsugtot
7.013396966
vioscreen_age
215.0
vioscreen_alanine
1.166493121
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
229.60584330000003
vioscreen_alphtoce
6.48232957
vioscreen_alphtoco
5.873123796000001
vioscreen_arginine
1.8083287069999998
vioscreen_ash
8.250767204
vioscreen_aspartam
0.0
vioscreen_aspartic
2.586219098
vioscreen_avcarb
55.26168664
vioscreen_bcodeid
Not provided
vioscreen_betacar
1281.716353
vioscreen_betacryp
55.44616331
vioscreen_betaine
15.70674096
vioscreen_betatoco
0.260219187
vioscreen_biochana
0.007041096
vioscreen_bmi
Not provided
vioscreen_caffeine
104.8407748
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.26868000000000003
vioscreen_calcium_servings
0.8728799999999999
vioscreen_calories
623.2686216
vioscreen_carbo
65.12172517
vioscreen_cholest
125.76435149999999
vioscreen_choline
155.96037030000002
vioscreen_clac9t11
0.010520548000000001
vioscreen_clat10c12
0.003671233
vioscreen_copper
0.760684831
vioscreen_coumest
0.072356164
vioscreen_cystine
0.33701370399999997
vioscreen_d_cheese
0.139041096
vioscreen_d_milk
0.02279452
vioscreen_d_tot_soym
0.268684931
vioscreen_d_total
0.268684931
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
0.328684914
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.7341643870000001
vioscreen_discfat_oil
15.816712599999999
vioscreen_discfat_sol
6.04709573
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.358684968
vioscreen_f_nj_citmlb
0.35698631
vioscreen_f_nj_other
0.18876712699999998
vioscreen_f_nj_total
0.545753458
vioscreen_f_other
0.584657518
vioscreen_f_total
0.943315062
vioscreen_fat
32.51800353
vioscreen_fiber
9.860027825
vioscreen_fibh2o
2.9347124489999996
vioscreen_fibinso
6.928903574
vioscreen_finished
4/13/15
vioscreen_fish_servings
0.24885
vioscreen_fol_deqv
134.46061640000002
vioscreen_fol_nat
122.82460400000001
vioscreen_fol_syn
6.835288019
vioscreen_formontn
0.00260274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
1.3
vioscreen_frtsumm
1.9
vioscreen_fructose
10.94849235
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.327424642
vioscreen_g_total
0.816602733
vioscreen_g_whl
0.48920547299999995
vioscreen_galactos
0.18238356100000003
vioscreen_gammtoco
4.979260421
vioscreen_gender
false
vioscreen_genistn
0.427260307
vioscreen_glac
23.12695848
vioscreen_gltc
26.03764448
vioscreen_glucose
9.327205961
vioscreen_glutamic
4.71076727
vioscreen_glycine
1.133123278
vioscreen_glycitn
0.081068499
vioscreen_grams
2911.731507
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.0
vioscreen_hei2010_veg
4.8
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.2
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.1
vioscreen_hei_score
77.4
vioscreen_hei_sodium
3.2
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
4.8
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
0.630602651
vioscreen_inositol
0.065342467
vioscreen_iron
3.5108217839999996
vioscreen_isoleuc
1.0259179520000001
vioscreen_isomalt
0.0
vioscreen_joules
2607.755822
vioscreen_juice_servings
0.79515
vioscreen_lactitol
0.0
vioscreen_lactose
1.8607671030000001
vioscreen_legumes
0.043068490999999993
vioscreen_leucine
1.8556710859999999
vioscreen_line_gi
147.98628
vioscreen_low_fat_dairy_serving
0.10679000000000001
vioscreen_lutzeax
682.0409247
vioscreen_lycopene
2062.6438359999997
vioscreen_lysine
1.381041059
vioscreen_m_egg
0.573095912
vioscreen_m_fish_hi
0.035452054
vioscreen_m_fish_lo
0.106383567
vioscreen_m_frank
0.15136986300000002
vioscreen_m_meat
0.102246575
vioscreen_m_mpf
0.559123293
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.16369863
vioscreen_m_soy
0.15523288699999999
vioscreen_magnes
162.0079302
vioscreen_maltitol
0.0
vioscreen_maltose
0.18723288800000001
vioscreen_mangan
1.632493278
vioscreen_mannitol
0.061643835999999994
vioscreen_methhis3
1.5162739790000002
vioscreen_methion
0.495095825
vioscreen_mfa141
0.014849315
vioscreen_mfa161
0.30947945
vioscreen_mfa181
13.9796166
vioscreen_mfa201
0.2038356
vioscreen_mfa221
0.003972603
vioscreen_mfatot
14.55684932
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.873123796000001
vioscreen_nccglbr
39.50062875
vioscreen_nccglgr
27.63271618
vioscreen_niacin
7.864821677
vioscreen_niacineq
12.33865582
vioscreen_nitrogen
4.188356499
vioscreen_non_fried_fish_servings
0.24885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.35810960700000005
vioscreen_oxalic
96.13416096
vioscreen_oxalicm
121.14961470000001
vioscreen_pantothe
2.387561537
vioscreen_pectins
1.699096011
vioscreen_pfa182
7.7963833739999995
vioscreen_pfa183
0.328191804
vioscreen_pfa184
0.001068493
vioscreen_pfa204
0.056602745
vioscreen_pfa205
0.004520548
vioscreen_pfa225
0.002547945
vioscreen_pfa226
0.021835617
vioscreen_pfatot
8.229451386000001
vioscreen_phenylal
1.176904046
vioscreen_phosphor
423.08891270000004
vioscreen_phytic
363.9270548
vioscreen_pinitol
0.005890411
vioscreen_potass
1108.779538
vioscreen_procdate
10/28/15
vioscreen_proline
1.4418630940000001
vioscreen_protanim
10.669315199999998
vioscreen_protein
24.9146859
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.2438918
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
485.0
vioscreen_retinol
74.15955694
vioscreen_rgrain
0.35671232
vioscreen_ribofla
0.657315063
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.3574
vioscreen_satoco
0.0
vioscreen_selenium
43.69043771
vioscreen_serine
1.3492876440000001
vioscreen_sfa100
0.051534245
vioscreen_sfa120
0.09800000099999999
vioscreen_sfa140
0.318630145
vioscreen_sfa160
4.468411548
vioscreen_sfa170
0.021726027000000002
vioscreen_sfa180
1.505561724
vioscreen_sfa200
0.17057533800000002
vioscreen_sfa220
0.34252056
vioscreen_sfa40
0.062657531
vioscreen_sfa60
0.028027396
vioscreen_sfa80
0.02608219
vioscreen_sfatot
7.300410691000001
vioscreen_sodium
1023.387414
vioscreen_sorbitol
0.207534247
vioscreen_srvid
18493.0
vioscreen_starch
18.66164517
vioscreen_started
4/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.96600091
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.7692602709999999
vioscreen_tfa161t
0.007671233
vioscreen_tfa181t
0.244356171
vioscreen_tfa182t
0.039808221
vioscreen_tgrain
0.767315089
vioscreen_thiamin
0.49624654700000004
vioscreen_threonin
0.881287708
vioscreen_time
27.0
vioscreen_totaltfa
0.292547942
vioscreen_totcla
0.014493151000000001
vioscreen_totfolat
129.65992079999998
vioscreen_totsugar
31.98846854
vioscreen_tryptoph
0.268602721
vioscreen_tyrosine
0.874575262
vioscreen_user_id
18493.0
vioscreen_v_drkgr
0.10805480099999999
vioscreen_v_orange
0.05646575
vioscreen_v_other
0.19495891399999998
vioscreen_v_potato
0.132520555
vioscreen_v_starcy
0.005726028
vioscreen_v_tomato
0.111534244
vioscreen_v_total
0.609260204
vioscreen_valine
1.22616435
vioscreen_veg5_day
1.0
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
1.2
vioscreen_visit
1.0
vioscreen_vita_iu
2621.353596
vioscreen_vita_rae
192.8466824
vioscreen_vita_re
311.5333048
vioscreen_vitb12
0.8912876909999999
vioscreen_vitb6
0.6284108620000001
vioscreen_vitc
42.64399615
vioscreen_vitd
1.052109559
vioscreen_vitd2
0.0007123289999999999
vioscreen_vitd3
1.051424627
vioscreen_vitd_iu
42.08438236
vioscreen_vite_iu
8.751177895
vioscreen_vitk
35.74616866
vioscreen_water
2787.40976
vioscreen_weight
Not provided
vioscreen_wgrain
0.41063015
vioscreen_whole_grain_servings
0.48921000000000003
vioscreen_xylitol
0.012082194
vioscreen_zinc
3.471260635
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)