American Gut Project; 10317.000022015
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632973
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022015
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
32.0
age_corrected
32.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22015
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1983.0
bmi
23.31
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-16
collection month
April
collection season
Spring
collection time
13:15
collection_timestamp
2015-04-16 13:15
consume_animal_products_abx
Not sure
contraceptive
Yes, I use an injected contraceptive (DMPA)
cosmetics_frequency
Never
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
64.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
805eb4c25157484add9a92156bae46020e818ee999bfd6d3f56e351b58030a812d96afcbf455c0c9c471b3870d68528d85d1f2e6f28e7983e3b9a494a8186ce4
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
-37.8
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
147.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Daily
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022015
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
78b78f21f4b13fdc
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0018630139999999999
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.104684824
vioscreen_addsugar
29.31375214
vioscreen_adsugtot
26.14180758
vioscreen_age
215.0
vioscreen_alanine
1.9622466619999999
vioscreen_alcohol
0.009753425
vioscreen_alcohol_servings
0.00186
vioscreen_alphacar
851.0642979
vioscreen_alphtoce
9.862138137
vioscreen_alphtoco
8.706384445
vioscreen_arginine
2.34956155
vioscreen_ash
17.88879629
vioscreen_aspartam
0.0
vioscreen_aspartic
4.964274533999999
vioscreen_avcarb
173.82575980000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
4662.289384000001
vioscreen_betacryp
225.6702911
vioscreen_betaine
123.5007277
vioscreen_betatoco
0.35693146200000003
vioscreen_biochana
0.009178081999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
294.205244
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.39099
vioscreen_calcium_servings
3.46855
vioscreen_calories
1714.461815
vioscreen_carbo
190.1068493
vioscreen_cholest
258.3425514
vioscreen_choline
274.301113
vioscreen_clac9t11
0.19126026699999998
vioscreen_clat10c12
0.031589048
vioscreen_copper
1.372191798
vioscreen_coumest
0.163369855
vioscreen_cystine
0.6348218529999999
vioscreen_d_cheese
0.531205478
vioscreen_d_milk
1.84906842
vioscreen_d_tot_soym
2.390986194
vioscreen_d_total
2.390986194
vioscreen_d_yogurt
0.0
vioscreen_daidzein
2.6341917269999997
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.2883835880000003
vioscreen_discfat_oil
29.33731271
vioscreen_discfat_sol
50.84861408
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00030137
vioscreen_f_citmlb
0.19123286399999997
vioscreen_f_nj_citmlb
0.19117807899999997
vioscreen_f_nj_other
0.586904155
vioscreen_f_nj_total
0.7780821920000001
vioscreen_f_other
0.586904155
vioscreen_f_total
0.77813704
vioscreen_fat
87.18748395
vioscreen_fiber
16.28186136
vioscreen_fibh2o
4.905014582
vioscreen_fibinso
11.39424631
vioscreen_finished
4/15/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
362.0962329
vioscreen_fol_nat
232.25659249999998
vioscreen_fol_syn
76.38904645
vioscreen_formontn
0.000767123
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.6
vioscreen_fructose
10.76704169
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.883123194
vioscreen_g_total
3.690191567
vioscreen_g_whl
0.807041116
vioscreen_galactos
0.077671234
vioscreen_gammtoco
9.894575396
vioscreen_gender
false
vioscreen_genistn
3.4642193519999998
vioscreen_glac
86.81555544
vioscreen_gltc
94.30433433
vioscreen_glucose
11.80712222
vioscreen_glutamic
10.92578125
vioscreen_glycine
1.5098084330000001
vioscreen_glycitn
0.7120273540000001
vioscreen_grams
4101.034247
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
11.8
vioscreen_hei2010_fatty_acids
0.6
vioscreen_hei2010_fruit
2.8
vioscreen_hei2010_greens_beans
3.6
vioscreen_hei2010_protien_foods
2.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.0
vioscreen_hei2010_sea_foods_plant_protiens
4.3
vioscreen_hei2010_sodium
4.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.1
vioscreen_hei_drk_g_org_veg_leg
3.0
vioscreen_hei_fruit
2.8
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
4.9
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
61.6
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
12.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.3429316269999998
vioscreen_inositol
0.03536986
vioscreen_iron
9.266247726
vioscreen_isoleuc
2.326383575
vioscreen_isomalt
0.0
vioscreen_joules
7173.3102739999995
vioscreen_juice_servings
0.00011
vioscreen_lactitol
0.0
vioscreen_lactose
23.53394424
vioscreen_legumes
0.022958904
vioscreen_leucine
4.049287644
vioscreen_line_gi
369.69734589999996
vioscreen_low_fat_dairy_serving
0.01208
vioscreen_lutzeax
3397.383904
vioscreen_lycopene
2447.52774
vioscreen_lysine
3.1601646110000003
vioscreen_m_egg
0.825369806
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.044739725999999994
vioscreen_m_mpf
0.124219179
vioscreen_m_nutsd
0.488136981
vioscreen_m_organ
0.0
vioscreen_m_poult
0.07947945299999999
vioscreen_m_soy
0.58630137
vioscreen_magnes
355.3274829
vioscreen_maltitol
0.0
vioscreen_maltose
2.173507063
vioscreen_mangan
3.561096024
vioscreen_mannitol
0.127698632
vioscreen_methhis3
0.537342479
vioscreen_methion
1.061534307
vioscreen_mfa141
0.054438352999999995
vioscreen_mfa161
0.78235599
vioscreen_mfa181
29.1568734
vioscreen_mfa201
0.17002740100000002
vioscreen_mfa221
0.00139726
vioscreen_mfatot
30.29794521
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.706384445
vioscreen_nccglbr
150.9824272
vioscreen_nccglgr
105.5963827
vioscreen_niacin
15.79931239
vioscreen_niacineq
26.20463131
vioscreen_nitrogen
8.373561911
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.420986228
vioscreen_oxalic
272.1306079
vioscreen_oxalicm
280.4110017
vioscreen_pantothe
4.7907674710000006
vioscreen_pectins
2.506273745
vioscreen_pfa182
13.18120585
vioscreen_pfa183
1.398137006
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.06441096
vioscreen_pfa205
0.0037260270000000002
vioscreen_pfa225
0.0032328770000000003
vioscreen_pfa226
0.014904108000000001
vioscreen_pfatot
14.69983412
vioscreen_phenylal
2.486192008
vioscreen_phosphor
1039.695634
vioscreen_phytic
603.4684932
vioscreen_pinitol
0.020438356
vioscreen_potass
3006.2297949999997
vioscreen_procdate
10/28/15
vioscreen_proline
3.828520642
vioscreen_protanim
26.6515625
vioscreen_protein
51.69386237
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.04281892
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
474.0
vioscreen_retinol
522.3943492999999
vioscreen_rgrain
3.090109295
vioscreen_ribofla
1.8427124019999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.4297799999999998
vioscreen_satoco
0.0
vioscreen_selenium
80.90237586
vioscreen_serine
2.7403290210000004
vioscreen_sfa100
1.1907122890000001
vioscreen_sfa120
1.683589068
vioscreen_sfa140
4.174958864
vioscreen_sfa160
17.17885006
vioscreen_sfa170
0.183726042
vioscreen_sfa180
7.261287992000001
vioscreen_sfa200
0.18931506399999998
vioscreen_sfa220
0.098986294
vioscreen_sfa40
1.324191828
vioscreen_sfa60
0.9144932579999999
vioscreen_sfa80
0.764575363
vioscreen_sfatot
35.22627622
vioscreen_sodium
2761.551027
vioscreen_sorbitol
0.008054795
vioscreen_srvid
18521.0
vioscreen_starch
87.82815711
vioscreen_started
4/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.769536600000002
vioscreen_sweet_servings
0.7359100000000001
vioscreen_tagatose
1.41879448
vioscreen_tfa161t
0.03249315
vioscreen_tfa181t
1.725780748
vioscreen_tfa182t
0.407616435
vioscreen_tgrain
3.913369542
vioscreen_thiamin
1.283945162
vioscreen_threonin
1.950822219
vioscreen_time
16.0
vioscreen_totaltfa
2.318411046
vioscreen_totcla
0.223150656
vioscreen_totfolat
308.6455479
vioscreen_totsugar
72.12144692
vioscreen_tryptoph
0.623945262
vioscreen_tyrosine
1.935835496
vioscreen_user_id
18521.0
vioscreen_v_drkgr
0.244547951
vioscreen_v_orange
0.168794522
vioscreen_v_other
0.736109569
vioscreen_v_potato
1.179479395
vioscreen_v_starcy
0.006575343000000001
vioscreen_v_tomato
0.17221918
vioscreen_v_total
2.507753304
vioscreen_valine
2.805096017
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
10409.78356
vioscreen_vita_rae
955.7840752999998
vioscreen_vita_re
1389.1716609999999
vioscreen_vitb12
3.0418630939999995
vioscreen_vitb6
1.5921097430000002
vioscreen_vitc
124.41937069999999
vioscreen_vitd
7.480383802
vioscreen_vitd2
0.0019178079999999998
vioscreen_vitd3
7.478466127999999
vioscreen_vitd_iu
299.2153521
vioscreen_vite_iu
12.96942423
vioscreen_vitk
151.9561216
vioscreen_water
3760.3753420000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.8232876709999999
vioscreen_whole_grain_servings
0.80704
vioscreen_xylitol
0.017534248
vioscreen_zinc
6.664465165
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
65.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)