American Gut Project; 10317.000031793
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634340
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031793
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031793
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
18.02
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/12/2015
collection month
August
collection season
Summer
collection time
09:45
collection_timestamp
2015-08-12 09:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am ambidextrous
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
New England
elevation
14.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
d3934ec6d538f7b7d5dfaf0e2a78d63f213f72893d265ad7c8e0fba467ad4b093edcff6b4225262800625b5275f4a9c3d3bfc88365a1cbf751436e4066f89573
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-72.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031793
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CT
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
15390ce04d14cf2c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000136986
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.8342194860000003
vioscreen_addsugar
18.677944399999998
vioscreen_adsugtot
17.87868418
vioscreen_age
215.0
vioscreen_alanine
2.049671246
vioscreen_alcohol
0.002082192
vioscreen_alcohol_servings
0.00014
vioscreen_alphacar
2399.876541
vioscreen_alphtoce
15.19383428
vioscreen_alphtoco
14.50218991
vioscreen_arginine
3.005808206
vioscreen_ash
17.62320741
vioscreen_aspartam
0.0
vioscreen_aspartic
4.474822078
vioscreen_avcarb
131.1273973
vioscreen_bcodeid
Not provided
vioscreen_betacar
22149.7411
vioscreen_betacryp
187.6670805
vioscreen_betaine
213.9682363
vioscreen_betatoco
0.262438338
vioscreen_biochana
0.003780822
vioscreen_bmi
Not provided
vioscreen_caffeine
213.97951630000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.54203
vioscreen_calcium_servings
2.4246
vioscreen_calories
1194.3081339999999
vioscreen_carbo
161.3364191
vioscreen_cholest
78.9875
vioscreen_choline
205.953018
vioscreen_clac9t11
0.036739728
vioscreen_clat10c12
0.0075890409999999995
vioscreen_copper
1.732082085
vioscreen_coumest
0.000246575
vioscreen_cystine
0.6556986770000001
vioscreen_d_cheese
0.42969862
vioscreen_d_milk
0.054821918
vioscreen_d_tot_soym
0.542027429
vioscreen_d_total
0.542027429
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.322712331
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.769041213
vioscreen_discfat_oil
16.87304152
vioscreen_discfat_sol
14.22580801
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004739726
vioscreen_f_citmlb
1.7300821380000002
vioscreen_f_nj_citmlb
1.72383565
vioscreen_f_nj_other
0.8845479890000001
vioscreen_f_nj_total
2.608410812
vioscreen_f_other
0.8845479890000001
vioscreen_f_total
2.614684724
vioscreen_fat
48.38150685
vioscreen_fiber
30.20931614
vioscreen_fibh2o
7.813014367999999
vioscreen_fibinso
22.44282294
vioscreen_finished
8/11/15
vioscreen_fish_servings
1.00481
vioscreen_fol_deqv
496.3510702
vioscreen_fol_nat
423.87880989999996
vioscreen_fol_syn
42.60912083
vioscreen_formontn
0.000876712
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.2
vioscreen_fructose
16.16008401
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.462931594
vioscreen_g_total
3.901122712
vioscreen_g_whl
2.438219212
vioscreen_galactos
0.21599999
vioscreen_gammtoco
5.79224703
vioscreen_gender
false
vioscreen_genistn
0.487369778
vioscreen_glac
58.95359589
vioscreen_gltc
66.89078553
vioscreen_glucose
14.046329199999999
vioscreen_glutamic
8.871125187
vioscreen_glycine
1.8985480319999999
vioscreen_glycitn
0.099260283
vioscreen_grams
3938.5232880000003
vioscreen_hei2010_dairy
3.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.7
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.3
vioscreen_hei_milk
3.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
81.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.008876853
vioscreen_inositol
0.10019178
vioscreen_iron
12.69169922
vioscreen_isoleuc
1.84183567
vioscreen_isomalt
0.0
vioscreen_joules
4996.983219
vioscreen_juice_servings
0.01255
vioscreen_lactitol
0.0
vioscreen_lactose
2.231808179
vioscreen_legumes
0.168054795
vioscreen_leucine
3.150246482
vioscreen_line_gi
333.0826841
vioscreen_low_fat_dairy_serving
0.06959
vioscreen_lutzeax
30083.621919999998
vioscreen_lycopene
11465.665070000001
vioscreen_lysine
2.5906853659999998
vioscreen_m_egg
0.150027403
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.24367124
vioscreen_m_frank
0.028712328
vioscreen_m_meat
0.035452056
vioscreen_m_mpf
0.697178086
vioscreen_m_nutsd
1.113671206
vioscreen_m_organ
0.0
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.15643837300000002
vioscreen_magnes
480.94892980000003
vioscreen_maltitol
0.0
vioscreen_maltose
1.008520591
vioscreen_mangan
7.327013993
vioscreen_mannitol
0.332876691
vioscreen_methhis3
2.2385752219999997
vioscreen_methion
0.7761096690000001
vioscreen_mfa141
0.029808217
vioscreen_mfa161
0.714684891
vioscreen_mfa181
17.89854853
vioscreen_mfa201
0.259232842
vioscreen_mfa221
0.065315069
vioscreen_mfatot
19.09520414
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.50218991
vioscreen_nccglbr
96.75253639
vioscreen_nccglgr
67.68402718
vioscreen_niacin
11.23978088
vioscreen_niacineq
21.45213907
vioscreen_nitrogen
7.339671179
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.764520515
vioscreen_oxalic
1675.998116
vioscreen_oxalicm
1721.473459
vioscreen_pantothe
3.7307393110000002
vioscreen_pectins
5.120246615
vioscreen_pfa182
9.795918504
vioscreen_pfa183
1.572931326
vioscreen_pfa184
0.01580822
vioscreen_pfa204
0.029424657000000003
vioscreen_pfa205
0.05224658
vioscreen_pfa225
0.019315069
vioscreen_pfa226
0.10476711699999999
vioscreen_pfatot
11.63260381
vioscreen_phenylal
2.094712516
vioscreen_phosphor
875.2351884
vioscreen_phytic
769.027911
vioscreen_pinitol
0.006328767
vioscreen_potass
3593.8708899999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.598164765
vioscreen_protanim
12.53597362
vioscreen_protein
44.55632491
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.02033123
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
213.0
vioscreen_retinol
108.19497
vioscreen_rgrain
1.313589018
vioscreen_ribofla
1.303507013
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.88638
vioscreen_satoco
0.0
vioscreen_selenium
69.29410852
vioscreen_serine
2.165233204
vioscreen_sfa100
0.23021919600000001
vioscreen_sfa120
0.267178094
vioscreen_sfa140
1.060082172
vioscreen_sfa160
7.593617562
vioscreen_sfa170
0.046383562
vioscreen_sfa180
2.568136806
vioscreen_sfa200
0.134164366
vioscreen_sfa220
0.199972597
vioscreen_sfa40
0.296054788
vioscreen_sfa60
0.14961644
vioscreen_sfa80
0.106082185
vioscreen_sfatot
12.95473834
vioscreen_sodium
2881.942466
vioscreen_sorbitol
0.48076707
vioscreen_srvid
20372.0
vioscreen_starch
60.77752569
vioscreen_started
8/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.12350974
vioscreen_sweet_servings
0.20756999999999998
vioscreen_tagatose
1.076027481
vioscreen_tfa161t
0.019315068
vioscreen_tfa181t
0.48191779100000004
vioscreen_tfa182t
0.178630129
vioscreen_tgrain
3.938876886
vioscreen_thiamin
1.118465559
vioscreen_threonin
1.7774791980000002
vioscreen_time
15.0
vioscreen_totaltfa
0.681479425
vioscreen_totcla
0.044356165999999995
vioscreen_totfolat
466.4879709
vioscreen_totsugar
57.75829944
vioscreen_tryptoph
0.613835625
vioscreen_tyrosine
1.570383736
vioscreen_user_id
20372.0
vioscreen_v_drkgr
1.658219011
vioscreen_v_orange
0.511972631
vioscreen_v_other
0.461863019
vioscreen_v_potato
0.005479451999999999
vioscreen_v_starcy
0.0032328770000000003
vioscreen_v_tomato
0.309616444
vioscreen_v_total
2.950355843
vioscreen_valine
2.188822205
vioscreen_veg5_day
6.2
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
39432.08767
vioscreen_vita_rae
2061.821575
vioscreen_vita_re
4015.4472600000004
vioscreen_vitb12
1.443315062
vioscreen_vitb6
1.291095723
vioscreen_vitc
129.99722820000002
vioscreen_vitd
2.297725813
vioscreen_vitd2
0.000410959
vioscreen_vitd3
2.297342546
vioscreen_vitd_iu
91.90903253
vioscreen_vite_iu
21.62791497
vioscreen_vitk
1076.813185
vioscreen_water
3676.735274
vioscreen_weight
Not provided
vioscreen_wgrain
2.625287618
vioscreen_whole_grain_servings
2.4382200000000003
vioscreen_xylitol
0.055260279
vioscreen_zinc
7.6146009470000005
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
47.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily