American Gut Project; 10317.000035374
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634401
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:36Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000035374
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000035374
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1947.0
bmi
24.48
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
South
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-13
collection month
September
collection season
Fall
collection time
07:30
collection_timestamp
2015-09-13 07:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
60.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
3d0bc5f583f2514460fcf71b80989ff77c47d2baeb5b9a1b6f725ea1bd0df8d15a65973d9f749f00995c1c39536c60b527ce28e8c03f29bbe144acdd8bd9f7da
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-76.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000035374
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Not provided
sex
female
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
359af242a961c753
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.7460273640000001
vioscreen_addsugar
9.311341503
vioscreen_adsugtot
9.087068573
vioscreen_age
215.0
vioscreen_alanine
3.458219513
vioscreen_alcohol
0.000027399999999999995
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1692.5878420000001
vioscreen_alphtoce
13.26619087
vioscreen_alphtoco
12.15978034
vioscreen_arginine
4.391945366
vioscreen_ash
12.58421982
vioscreen_aspartam
0.0
vioscreen_aspartic
6.270520521
vioscreen_avcarb
35.78517765
vioscreen_bcodeid
Not provided
vioscreen_betacar
13540.66575
vioscreen_betacryp
25.29564426
vioscreen_betaine
60.41090539
vioscreen_betatoco
0.326328748
vioscreen_biochana
0.0029315070000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
47.44246575
vioscreen_calcium
true
vioscreen_calcium_avg
800.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.03784
vioscreen_calcium_servings
1.24619
vioscreen_calories
1044.042209
vioscreen_carbo
49.84884953
vioscreen_cholest
358.86958480000004
vioscreen_choline
389.5252568
vioscreen_clac9t11
0.045616443
vioscreen_clat10c12
0.017698632
vioscreen_copper
1.526684905
vioscreen_coumest
0.000410959
vioscreen_cystine
0.826821941
vioscreen_d_cheese
0.001808219
vioscreen_d_milk
0.035972603
vioscreen_d_tot_soym
0.037835618
vioscreen_d_total
0.037835618
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.033013697
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.049150524
vioscreen_discfat_oil
35.84490315
vioscreen_discfat_sol
10.17838319
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.54367124
vioscreen_f_nj_citmlb
0.5396986029999999
vioscreen_f_nj_other
0.08608219199999999
vioscreen_f_nj_total
0.625780832
vioscreen_f_other
0.08608219199999999
vioscreen_f_total
0.629726044
vioscreen_fat
69.85996896
vioscreen_fiber
14.06386184
vioscreen_fibh2o
2.126055156
vioscreen_fibinso
11.95991813
vioscreen_finished
9/10/15
vioscreen_fish_servings
1.40962
vioscreen_fol_deqv
327.98953339999997
vioscreen_fol_nat
323.17559930000004
vioscreen_fol_syn
2.829671447
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.3
vioscreen_fructose
7.354275471
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.154794521
vioscreen_g_total
0.154794521
vioscreen_g_whl
0.0
vioscreen_galactos
0.05249315
vioscreen_gammtoco
9.548821436
vioscreen_gender
false
vioscreen_genistn
0.027424656000000002
vioscreen_glac
7.7481104179999996
vioscreen_gltc
9.734958931
vioscreen_glucose
7.905973753
vioscreen_glutamic
10.06942423
vioscreen_glycine
3.151780889
vioscreen_glycitn
0.0058356169999999995
vioscreen_grams
1957.1366440000002
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.8
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.9
vioscreen_hei_score
62.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.764520682
vioscreen_inositol
0.09676711199999999
vioscreen_iron
8.653424657999999
vioscreen_isoleuc
2.7816712260000003
vioscreen_isomalt
0.0
vioscreen_joules
4368.273288
vioscreen_juice_servings
0.00792
vioscreen_lactitol
0.0
vioscreen_lactose
0.34720546799999996
vioscreen_legumes
0.001452055
vioscreen_leucine
4.714219352
vioscreen_line_gi
92.72687286
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
17825.34795
vioscreen_lycopene
2204.058219
vioscreen_lysine
4.613780902
vioscreen_m_egg
1.006821891
vioscreen_m_fish_hi
0.41175344799999997
vioscreen_m_fish_lo
0.391643869
vioscreen_m_frank
0.0
vioscreen_m_meat
2.151424544
vioscreen_m_mpf
5.216054754
vioscreen_m_nutsd
2.179205573
vioscreen_m_organ
0.29328768
vioscreen_m_poult
1.968027444
vioscreen_m_soy
0.000438356
vioscreen_magnes
234.6077269
vioscreen_maltitol
0.0
vioscreen_maltose
0.064575347
vioscreen_mangan
2.554054908
vioscreen_mannitol
0.190657545
vioscreen_methhis3
19.20120532
vioscreen_methion
1.497095897
vioscreen_mfa141
0.084931517
vioscreen_mfa161
1.056164467
vioscreen_mfa181
29.56273812
vioscreen_mfa201
0.392027429
vioscreen_mfa221
0.089315064
vioscreen_mfatot
31.25271297
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.15978034
vioscreen_nccglbr
24.53161655
vioscreen_nccglgr
17.16065791
vioscreen_niacin
17.8875602
vioscreen_niacineq
29.36312607
vioscreen_nitrogen
10.28191754
vioscreen_non_fried_fish_servings
1.40962
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.8362190980000002
vioscreen_oxalic
505.98116439999995
vioscreen_oxalicm
550.8035531
vioscreen_pantothe
3.8426025389999996
vioscreen_pectins
3.471452269
vioscreen_pfa182
15.54126177
vioscreen_pfa183
1.576986569
vioscreen_pfa184
0.016301369
vioscreen_pfa204
0.217534251
vioscreen_pfa205
0.06589041400000001
vioscreen_pfa225
0.03060274
vioscreen_pfa226
0.147205489
vioscreen_pfatot
17.70690283
vioscreen_phenylal
2.660301397
vioscreen_phosphor
769.4410958999999
vioscreen_phytic
260.7126926
vioscreen_pinitol
0.000246575
vioscreen_potass
2098.78476
vioscreen_procdate
10/28/15
vioscreen_proline
2.759863114
vioscreen_protanim
46.78191888
vioscreen_protein
62.78080051
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.99972576
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
94.0
vioscreen_retinol
665.6083904
vioscreen_rgrain
0.10432877199999999
vioscreen_ribofla
1.209397324
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.56255
vioscreen_satoco
0.0
vioscreen_selenium
95.45946062
vioscreen_serine
2.871890384
vioscreen_sfa100
0.034465752999999995
vioscreen_sfa120
0.091808215
vioscreen_sfa140
0.474630194
vioscreen_sfa160
10.00158992
vioscreen_sfa170
0.041123291
vioscreen_sfa180
3.7790410289999996
vioscreen_sfa200
0.252931485
vioscreen_sfa220
0.396246547
vioscreen_sfa40
0.008109589
vioscreen_sfa60
0.003589041
vioscreen_sfa80
0.007150685
vioscreen_sfatot
15.28484857
vioscreen_sodium
2280.882192
vioscreen_sorbitol
0.034301371000000004
vioscreen_srvid
20694.0
vioscreen_starch
6.043917887999999
vioscreen_started
9/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.065479185
vioscreen_sweet_servings
0.01281
vioscreen_tagatose
0.057260273
vioscreen_tfa161t
0.025890412999999998
vioscreen_tfa181t
0.787616468
vioscreen_tfa182t
0.159534235
vioscreen_tgrain
0.10432877199999999
vioscreen_thiamin
0.636520553
vioscreen_threonin
2.5854517269999997
vioscreen_time
33.0
vioscreen_totaltfa
0.980931447
vioscreen_totcla
0.063369866
vioscreen_totfolat
326.0052654
vioscreen_totsugar
25.48857288
vioscreen_tryptoph
0.6883288240000001
vioscreen_tyrosine
2.167232984
vioscreen_user_id
20694.0
vioscreen_v_drkgr
1.2694794120000001
vioscreen_v_orange
0.313671248
vioscreen_v_other
1.0003014129999999
vioscreen_v_potato
0.005479451999999999
vioscreen_v_starcy
0.0023287670000000003
vioscreen_v_tomato
0.38194521600000003
vioscreen_v_total
2.973205399
vioscreen_valine
3.0403290210000002
vioscreen_veg5_day
5.6
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
26218.0137
vioscreen_vita_rae
1865.57637
vioscreen_vita_re
3065.5428079999997
vioscreen_vitb12
6.6019725220000005
vioscreen_vitb6
1.4460271969999998
vioscreen_vitc
98.60847603
vioscreen_vitd
3.573205399
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
3.57243853
vioscreen_vitd_iu
142.928216
vioscreen_vite_iu
18.14786227
vioscreen_vitk
798.4427226
vioscreen_water
1771.0811640000002
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.034684931
vioscreen_zinc
8.210630485
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
73.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never