American Gut Project; 10317.000014549
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632373
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:40:39Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000014549
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000014549
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by an alternative medicine practitioner
birth year
1976.0
bmi
20.12
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by an alternative medicine practitioner
collection date
01/02/2015
collection month
January
collection season
Winter
collection time
09:45
collection_timestamp
2015-01-02 09:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
Not provided
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
41.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
1295598f4be5822e96dae7fb916d99ac3e29391b8355e1637e453201238a99fc84d2d1ad03cb9cfae5e903ed4263dc3b56de13e0bff81b681fbd8090ffd08575
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past 3 months
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000014549
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
32f32b7da62d3734
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.078630139
vioscreen_a_cal
9.817452376
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.559232863
vioscreen_addsugar
14.16104051
vioscreen_adsugtot
13.09367107
vioscreen_age
214.0
vioscreen_alanine
4.30452028
vioscreen_alcohol
1.229671196
vioscreen_alcohol_servings
0.07862999999999999
vioscreen_alphacar
3892.4051369999997
vioscreen_alphtoce
29.02241545
vioscreen_alphtoco
27.20808273
vioscreen_arginine
6.292685146
vioscreen_ash
23.76019371
vioscreen_aspartam
0.0
vioscreen_aspartic
8.701535076
vioscreen_avcarb
81.19356271
vioscreen_bcodeid
Not provided
vioscreen_betacar
22121.44384
vioscreen_betacryp
90.0598887
vioscreen_betaine
65.48165133
vioscreen_betatoco
0.78983564
vioscreen_biochana
0.007260274000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
102.00252569999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.0643
vioscreen_calcium_servings
1.8492099999999998
vioscreen_calories
2222.43613
vioscreen_carbo
110.43428940000001
vioscreen_cholest
332.4833262
vioscreen_choline
463.0578339
vioscreen_clac9t11
0.072493148
vioscreen_clat10c12
0.032849317
vioscreen_copper
2.007972529
vioscreen_coumest
0.024000001
vioscreen_cystine
1.057999953
vioscreen_d_cheese
0.000876712
vioscreen_d_milk
0.063424662
vioscreen_d_tot_soym
0.064301373
vioscreen_d_total
0.064301373
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.125123293
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.579890337
vioscreen_discfat_oil
98.76636344
vioscreen_discfat_sol
27.21542701
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.01539726
vioscreen_f_nj_citmlb
0.009287672
vioscreen_f_nj_other
0.580191793
vioscreen_f_nj_total
0.589479462
vioscreen_f_other
0.580191793
vioscreen_f_total
0.5955890389999999
vioscreen_fat
169.5433754
vioscreen_fiber
29.20936697
vioscreen_fibh2o
6.307890759
vioscreen_fibinso
22.995422199999997
vioscreen_finished
12/18/14
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
554.7418236000001
vioscreen_fol_nat
531.0650684999999
vioscreen_fol_syn
13.93682042
vioscreen_formontn
0.00509589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
1.2
vioscreen_fructose
8.287534782
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.654657484
vioscreen_g_total
0.660356161
vioscreen_g_whl
0.005671233
vioscreen_galactos
0.11030137599999999
vioscreen_gammtoco
14.720493099999999
vioscreen_gender
false
vioscreen_genistn
0.17197260399999997
vioscreen_glac
24.82293183
vioscreen_gltc
29.40452162
vioscreen_glucose
9.374602686
vioscreen_glutamic
14.11731459
vioscreen_glycine
4.510931815
vioscreen_glycitn
0.024986301000000002
vioscreen_grams
4972.976712
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.3
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.7
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
3.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.9
vioscreen_hei_score
58.7
vioscreen_hei_sodium
1.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.308931701
vioscreen_inositol
0.03323288
vioscreen_iron
12.92983465
vioscreen_isoleuc
3.362383615
vioscreen_isomalt
0.0
vioscreen_joules
9298.673288
vioscreen_juice_servings
0.012190000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
0.614438368
vioscreen_legumes
0.02589041
vioscreen_leucine
5.936273277000001
vioscreen_line_gi
175.5647688
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
17137.14658
vioscreen_lycopene
944.0291952
vioscreen_lysine
5.17128739
vioscreen_m_egg
1.012958934
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.555616447
vioscreen_m_meat
3.6582466019999997
vioscreen_m_mpf
4.546986034
vioscreen_m_nutsd
6.548547865
vioscreen_m_organ
0.0
vioscreen_m_poult
0.333123278
vioscreen_m_soy
0.0052602740000000005
vioscreen_magnes
445.20059929999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.125342466
vioscreen_mangan
4.670301128999999
vioscreen_mannitol
0.207698623
vioscreen_methhis3
19.66246656
vioscreen_methion
1.672136866
vioscreen_mfa141
0.125424654
vioscreen_mfa161
2.175589115
vioscreen_mfa181
80.79034675
vioscreen_mfa201
1.096109552
vioscreen_mfa221
0.022109591
vioscreen_mfatot
84.41517551
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
27.20126284
vioscreen_nccglbr
63.47591503
vioscreen_nccglgr
44.39873448
vioscreen_niacin
26.72125963
vioscreen_niacineq
40.27794842
vioscreen_nitrogen
13.99882411
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.3332874039999996
vioscreen_oxalic
584.199786
vioscreen_oxalicm
629.9160531
vioscreen_pantothe
6.103425326
vioscreen_pectins
6.936794333
vioscreen_pfa182
36.24328714
vioscreen_pfa183
3.2924928430000002
vioscreen_pfa184
0.001506849
vioscreen_pfa204
0.16813698300000002
vioscreen_pfa205
0.006465754000000001
vioscreen_pfa225
0.010054794
vioscreen_pfa226
0.023561642
vioscreen_pfatot
39.86978007
vioscreen_phenylal
3.6258357639999996
vioscreen_phosphor
1229.6773970000002
vioscreen_phytic
854.0066780999999
vioscreen_pinitol
0.000246575
vioscreen_potass
3677.878425
vioscreen_procdate
10/28/15
vioscreen_proline
4.000110031
vioscreen_protanim
44.99353061
vioscreen_protein
83.57827483
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.58857556
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
682.0
vioscreen_retinol
102.82186429999999
vioscreen_rgrain
0.44416437
vioscreen_ribofla
1.468109549
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.8425199999999995
vioscreen_satoco
0.014931506
vioscreen_selenium
120.83392549999999
vioscreen_serine
4.04578038
vioscreen_sfa100
0.049397262000000004
vioscreen_sfa120
0.192493157
vioscreen_sfa140
0.914794587
vioscreen_sfa160
22.27471238
vioscreen_sfa170
0.13657533800000002
vioscreen_sfa180
8.115589549
vioscreen_sfa200
0.7512877579999999
vioscreen_sfa220
1.140137053
vioscreen_sfa40
0.01339726
vioscreen_sfa60
0.005561644
vioscreen_sfa80
0.013945205
vioscreen_sfatot
34.11551263
vioscreen_sodium
4167.816781
vioscreen_sorbitol
0.005315068
vioscreen_srvid
16344.0
vioscreen_starch
28.59972442
vioscreen_started
12/18/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.98408605
vioscreen_sweet_servings
0.047580000000000004
vioscreen_tagatose
0.21087671600000002
vioscreen_tfa161t
0.07471233
vioscreen_tfa181t
1.101041193
vioscreen_tfa182t
0.32841094600000004
vioscreen_tgrain
0.720520521
vioscreen_thiamin
1.2274247679999999
vioscreen_threonin
3.06983559
vioscreen_time
56.0
vioscreen_totaltfa
1.505150866
vioscreen_totcla
0.10479451
vioscreen_totfolat
545.0017978999999
vioscreen_totsugar
39.5113094
vioscreen_tryptoph
0.8138355829999999
vioscreen_tyrosine
2.691205754
vioscreen_user_id
16344.0
vioscreen_v_drkgr
1.7554794519999999
vioscreen_v_orange
0.97786305
vioscreen_v_other
2.76523287
vioscreen_v_potato
0.15035616699999999
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.082904115
vioscreen_v_total
5.731808513
vioscreen_valine
3.859533859
vioscreen_veg5_day
12.7
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
11.5
vioscreen_visit
1.0
vioscreen_vita_iu
40530.80822
vioscreen_vita_rae
2112.2126710000002
vioscreen_vita_re
4121.600685
vioscreen_vitb12
3.175671219
vioscreen_vitb6
2.406959011
vioscreen_vitc
145.1986194
vioscreen_vitd
2.106191808
vioscreen_vitd2
0.0
vioscreen_vitd3
2.106191808
vioscreen_vitd_iu
84.2476723
vioscreen_vite_iu
40.60933754
vioscreen_vitk
800.6108732999999
vioscreen_water
4594.278425
vioscreen_weight
Not provided
vioscreen_wgrain
0.276356151
vioscreen_whole_grain_servings
0.0056700000000000006
vioscreen_xylitol
0.037753424
vioscreen_zinc
13.42243686
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
49.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)