American Gut Project; 10317.000023824
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632694
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023824
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23824
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
25.09
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-03-17
collection month
March
collection season
Spring
collection time
20:00
collection_timestamp
2015-03-17 20:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Plains
elevation
185.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
17435093c67323fa9cfb0dcb8fb4fa81bbca7e0fdfee2e44348ae2a223c91b4292ea00968aad864ceb4e729032b2cd836c606755343bf19c2771f1035717e491
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
38.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-90.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023824
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
ce801620db8b7081
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.211479459
vioscreen_a_cal
253.46558219999997
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.22452041
vioscreen_addsugar
45.0747164
vioscreen_adsugtot
42.79369649
vioscreen_age
215.0
vioscreen_alanine
3.220493432
vioscreen_alcohol
33.29136879
vioscreen_alcohol_servings
2.21148
vioscreen_alphacar
4584.739726
vioscreen_alphtoce
13.91498689
vioscreen_alphtoco
12.63175567
vioscreen_arginine
3.6428771139999996
vioscreen_ash
22.46254548
vioscreen_aspartam
0.0
vioscreen_aspartic
6.323095703
vioscreen_avcarb
207.91055219999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
21757.49041
vioscreen_betacryp
204.2762414
vioscreen_betaine
223.47579199999998
vioscreen_betatoco
0.514794546
vioscreen_biochana
0.014082193
vioscreen_bmi
Not provided
vioscreen_caffeine
13.40002676
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.6138100000000001
vioscreen_calcium_servings
2.5709
vioscreen_calories
1938.1073629999999
vioscreen_carbo
245.04646830000002
vioscreen_cholest
135.7155394
vioscreen_choline
309.6844178
vioscreen_clac9t11
0.047205477999999995
vioscreen_clat10c12
0.00909589
vioscreen_copper
1.7745476709999999
vioscreen_coumest
0.004712329
vioscreen_cystine
0.89076722
vioscreen_d_cheese
0.45290410299999995
vioscreen_d_milk
0.160493156
vioscreen_d_tot_soym
0.613808201
vioscreen_d_total
0.613808201
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.575451995
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.731068567
vioscreen_discfat_oil
20.00079195
vioscreen_discfat_sol
25.80136986
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003068493
vioscreen_f_citmlb
1.030657625
vioscreen_f_nj_citmlb
1.018438386
vioscreen_f_nj_other
0.5703835270000001
vioscreen_f_nj_total
1.5888217040000001
vioscreen_f_other
0.5703835270000001
vioscreen_f_total
1.601068366
vioscreen_fat
58.59325771
vioscreen_fiber
37.10208958
vioscreen_fibh2o
7.539890571
vioscreen_fibinso
29.66318226
vioscreen_finished
3/17/15
vioscreen_fish_servings
3.22231
vioscreen_fol_deqv
464.3856164
vioscreen_fol_nat
407.21301370000003
vioscreen_fol_syn
33.57227365
vioscreen_formontn
0.0020273970000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.2
vioscreen_fructose
20.00624732
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.8009588369999998
vioscreen_g_total
5.85668544
vioscreen_g_whl
4.055698844
vioscreen_galactos
0.20109587399999998
vioscreen_gammtoco
10.52221814
vioscreen_gender
false
vioscreen_genistn
0.970109663
vioscreen_glac
90.70075985
vioscreen_gltc
103.00916099999999
vioscreen_glucose
18.91309396
vioscreen_glutamic
13.79364432
vioscreen_glycine
2.756767377
vioscreen_glycitn
0.158986298
vioscreen_grams
3693.6267119999998
vioscreen_hei2010_dairy
2.4
vioscreen_hei2010_empty_calories
16.2
vioscreen_hei2010_fatty_acids
5.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.1
vioscreen_hei_milk
2.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.6
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
68.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
10.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.688657661
vioscreen_inositol
0.23975341
vioscreen_iron
14.02460135
vioscreen_isoleuc
2.820876699
vioscreen_isomalt
0.0
vioscreen_joules
8109.034932
vioscreen_juice_servings
0.02449
vioscreen_lactitol
0.0
vioscreen_lactose
2.672575316
vioscreen_legumes
0.11380822199999999
vioscreen_leucine
4.760054915
vioscreen_line_gi
454.7631421
vioscreen_low_fat_dairy_serving
0.01208
vioscreen_lutzeax
16468.078080000003
vioscreen_lycopene
21633.30274
vioscreen_lysine
4.090191901
vioscreen_m_egg
0.23969862399999997
vioscreen_m_fish_hi
1.1517260409999999
vioscreen_m_fish_lo
0.684465758
vioscreen_m_frank
0.036931506
vioscreen_m_meat
1.017205392
vioscreen_m_mpf
2.890328687
vioscreen_m_nutsd
0.061917809000000004
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.294191773
vioscreen_magnes
417.60004280000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.61230151
vioscreen_mangan
6.454959734
vioscreen_mannitol
0.8605204540000001
vioscreen_methhis3
10.40375375
vioscreen_methion
1.3668493819999998
vioscreen_mfa141
0.062383562999999996
vioscreen_mfa161
0.845452045
vioscreen_mfa181
19.64553189
vioscreen_mfa201
0.287479432
vioscreen_mfa221
0.199671225
vioscreen_mfatot
21.24490582
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.63175567
vioscreen_nccglbr
160.4167487
vioscreen_nccglgr
112.2156892
vioscreen_niacin
18.92687687
vioscreen_niacineq
31.49133936
vioscreen_nitrogen
10.84410986
vioscreen_non_fried_fish_servings
3.22231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.113424724
vioscreen_oxalic
426.0496575
vioscreen_oxalicm
428.6299658
vioscreen_pantothe
4.623452884
vioscreen_pectins
6.458520842
vioscreen_pfa182
11.12147902
vioscreen_pfa183
1.571890217
vioscreen_pfa184
0.04279452
vioscreen_pfa204
0.065726027
vioscreen_pfa205
0.142410968
vioscreen_pfa225
0.056136991
vioscreen_pfa226
0.300630125
vioscreen_pfatot
13.37887816
vioscreen_phenylal
2.87257565
vioscreen_phosphor
1201.66875
vioscreen_phytic
999.0642979
vioscreen_pinitol
0.0007123289999999999
vioscreen_potass
3853.680137
vioscreen_procdate
10/28/15
vioscreen_proline
3.761616746
vioscreen_protanim
30.83920698
vioscreen_protein
66.67014662
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.83153093
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
522.0
vioscreen_retinol
130.4477312
vioscreen_rgrain
1.8401644769999999
vioscreen_ribofla
1.3300274570000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.02342
vioscreen_satoco
0.0
vioscreen_selenium
111.95613229999998
vioscreen_serine
2.965999572
vioscreen_sfa100
0.36079452700000003
vioscreen_sfa120
1.414630043
vioscreen_sfa140
1.680054881
vioscreen_sfa160
9.504056079
vioscreen_sfa170
0.073917807
vioscreen_sfa180
4.604931306
vioscreen_sfa200
0.104493159
vioscreen_sfa220
0.060027402
vioscreen_sfa40
0.282191802
vioscreen_sfa60
0.141178079
vioscreen_sfa80
0.25326028100000003
vioscreen_sfatot
18.70528548
vioscreen_sodium
4393.632877
vioscreen_sorbitol
0.40041094200000005
vioscreen_srvid
18327.0
vioscreen_starch
95.89144906
vioscreen_started
3/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
49.38441246
vioscreen_sweet_servings
1.28219
vioscreen_tagatose
1.520684898
vioscreen_tfa161t
0.034904108999999996
vioscreen_tfa181t
1.32969862
vioscreen_tfa182t
0.374410927
vioscreen_tgrain
5.7654798529999995
vioscreen_thiamin
1.37923283
vioscreen_threonin
2.595123207
vioscreen_time
23.0
vioscreen_totaltfa
1.777506789
vioscreen_totcla
0.056876708
vioscreen_totfolat
440.7851027
vioscreen_totsugar
93.54007920000001
vioscreen_tryptoph
0.753452165
vioscreen_tyrosine
2.1431510190000003
vioscreen_user_id
18327.0
vioscreen_v_drkgr
1.483397267
vioscreen_v_orange
0.988958907
vioscreen_v_other
2.33397267
vioscreen_v_potato
0.054383562999999996
vioscreen_v_starcy
0.032438353999999996
vioscreen_v_tomato
1.173616425
vioscreen_v_total
6.067588827000001
vioscreen_valine
3.2407122889999997
vioscreen_veg5_day
10.5
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
12.1
vioscreen_visit
1.0
vioscreen_vita_iu
40688.80822
vioscreen_vita_rae
2143.114897
vioscreen_vita_re
4155.782192000001
vioscreen_vitb12
3.287451841
vioscreen_vitb6
2.395314841
vioscreen_vitc
266.7455693
vioscreen_vitd
6.859615796
vioscreen_vitd2
0.000739726
vioscreen_vitd3
6.858958288999999
vioscreen_vitd_iu
274.3846318
vioscreen_vite_iu
18.83586526
vioscreen_vitk
779.4696918
vioscreen_water
3285.47363
vioscreen_weight
Not provided
vioscreen_wgrain
3.925315042
vioscreen_whole_grain_servings
4.0557
vioscreen_xylitol
0.077150685
vioscreen_zinc
9.335397715
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
83.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)