American Gut Project; 10317.000026002
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633434
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026002
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26002
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1962.0
bmi
21.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
05/01/2015
collection month
May
collection season
Spring
collection time
08:00
collection_timestamp
2015-05-01 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1591.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2e91e1667ba5890a58b8c6ed1ea509109bbb320a511d47bb1ce0bdfb1e735633ad8507591ca90bd033a7c235d5727298f32c0de9c9d4b23858020abac909331d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
39.8
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Daily
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026002
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
360cb031ca5e4fda
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.7361917570000001
vioscreen_a_cal
76.83049015
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.5317543339999995
vioscreen_addsugar
37.96967038
vioscreen_adsugtot
33.53216235
vioscreen_age
215.0
vioscreen_alanine
2.39583573
vioscreen_alcohol
10.60131502
vioscreen_alcohol_servings
0.73619
vioscreen_alphacar
2190.420548
vioscreen_alphtoce
10.08786253
vioscreen_alphtoco
9.125535102999999
vioscreen_arginine
2.946903762
vioscreen_ash
14.28668664
vioscreen_aspartam
0.0
vioscreen_aspartic
5.064657467
vioscreen_avcarb
153.450899
vioscreen_bcodeid
Not provided
vioscreen_betacar
8959.25274
vioscreen_betacryp
110.4443386
vioscreen_betaine
54.00063142
vioscreen_betatoco
0.299205477
vioscreen_biochana
0.007890411
vioscreen_bmi
Not provided
vioscreen_caffeine
173.1196918
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.86545
vioscreen_calcium_servings
2.48315
vioscreen_calories
1265.535873
vioscreen_carbo
174.4888913
vioscreen_cholest
99.32121147
vioscreen_choline
214.3130565
vioscreen_clac9t11
0.030575345
vioscreen_clat10c12
0.0063287659999999996
vioscreen_copper
1.048904126
vioscreen_coumest
0.191643827
vioscreen_cystine
0.563260306
vioscreen_d_cheese
0.32010959999999994
vioscreen_d_milk
0.044520548
vioscreen_d_tot_soym
0.865452095
vioscreen_d_total
0.865452095
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.13287671199999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.801506983
vioscreen_discfat_oil
15.20277049
vioscreen_discfat_sol
13.5701105
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001205479
vioscreen_f_citmlb
0.781260284
vioscreen_f_nj_citmlb
0.346712316
vioscreen_f_nj_other
1.084849235
vioscreen_f_nj_total
1.43156153
vioscreen_f_other
1.536082145
vioscreen_f_total
2.317369769
vioscreen_fat
39.54887093
vioscreen_fiber
20.8789611
vioscreen_fibh2o
6.613124064
vioscreen_fibinso
14.28134097
vioscreen_finished
4/30/15
vioscreen_fish_servings
2.67096
vioscreen_fol_deqv
286.19940069999996
vioscreen_fol_nat
251.0871789
vioscreen_fol_syn
20.6591235
vioscreen_formontn
0.001287671
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
3.1
vioscreen_frtsumm
4.6
vioscreen_fructose
30.88131956
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.294109606
vioscreen_g_total
1.7764932709999999
vioscreen_g_whl
0.48238354
vioscreen_galactos
0.9298082329999999
vioscreen_gammtoco
6.373150551
vioscreen_gender
false
vioscreen_genistn
0.120109589
vioscreen_glac
65.53361515
vioscreen_gltc
71.90771618
vioscreen_glucose
27.32312447
vioscreen_glutamic
9.158738897000001
vioscreen_glycine
2.03673982
vioscreen_glycitn
0.005150685
vioscreen_grams
1888.4791100000002
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
19.6
vioscreen_hei2010_fatty_acids
8.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
76.5
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
16.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.3
vioscreen_height
Not provided
vioscreen_histidin
1.2612877409999999
vioscreen_inositol
0.278000003
vioscreen_iron
7.5019176739999995
vioscreen_isoleuc
2.119041464
vioscreen_isomalt
0.0
vioscreen_joules
5294.998288000001
vioscreen_juice_servings
1.77162
vioscreen_lactitol
0.0
vioscreen_lactose
8.297396725
vioscreen_legumes
0.134986303
vioscreen_leucine
3.725863188
vioscreen_line_gi
377.8005137
vioscreen_low_fat_dairy_serving
0.522
vioscreen_lutzeax
2940.008562
vioscreen_lycopene
14575.260269999999
vioscreen_lysine
3.445616171
vioscreen_m_egg
0.032383558
vioscreen_m_fish_hi
0.7253973140000001
vioscreen_m_fish_lo
0.7967397190000001
vioscreen_m_frank
0.147835614
vioscreen_m_meat
0.24734246199999999
vioscreen_m_mpf
2.721260301
vioscreen_m_nutsd
1.118356114
vioscreen_m_organ
0.0
vioscreen_m_poult
0.8039726359999999
vioscreen_m_soy
0.000575342
vioscreen_magnes
255.15584330000002
vioscreen_maltitol
0.0
vioscreen_maltose
2.724684958
vioscreen_mangan
2.878218977
vioscreen_mannitol
0.5512876329999999
vioscreen_methhis3
9.072767284
vioscreen_methion
1.097643876
vioscreen_mfa141
0.03950685
vioscreen_mfa161
0.639452038
vioscreen_mfa181
14.72558995
vioscreen_mfa201
0.253232878
vioscreen_mfa221
0.12315067699999999
vioscreen_mfatot
15.93728863
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4
vioscreen_natoco
8.962330105
vioscreen_nccglbr
113.8285531
vioscreen_nccglgr
79.62840859999999
vioscreen_niacin
13.959314800000001
vioscreen_niacineq
22.34326038
vioscreen_nitrogen
7.895779377
vioscreen_non_fried_fish_servings
2.24346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.146246589
vioscreen_oxalic
204.48084330000003
vioscreen_oxalicm
203.56866440000002
vioscreen_pantothe
4.610301397
vioscreen_pectins
3.946822493
vioscreen_pfa182
8.064685226
vioscreen_pfa183
0.747589195
vioscreen_pfa184
0.029753426
vioscreen_pfa204
0.068301365
vioscreen_pfa205
0.110273952
vioscreen_pfa225
0.04128767
vioscreen_pfa226
0.21797261699999998
vioscreen_pfatot
9.34654725
vioscreen_phenylal
2.123397367
vioscreen_phosphor
890.5229452
vioscreen_phytic
490.57983729999995
vioscreen_pinitol
0.006246575
vioscreen_potass
2907.036301
vioscreen_procdate
10/28/15
vioscreen_proline
3.0147400739999997
vioscreen_protanim
29.43646725
vioscreen_protein
48.64063035
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.19766963
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
450.0
vioscreen_retinol
125.9401755
vioscreen_rgrain
0.838876719
vioscreen_ribofla
1.276383742
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.39321
vioscreen_satoco
0.36263013899999996
vioscreen_selenium
63.21126391
vioscreen_serine
2.293917888
vioscreen_sfa100
0.166136985
vioscreen_sfa120
0.20178082600000002
vioscreen_sfa140
0.897808336
vioscreen_sfa160
6.255862051
vioscreen_sfa170
0.043671234
vioscreen_sfa180
2.32936995
vioscreen_sfa200
0.114684933
vioscreen_sfa220
0.180575352
vioscreen_sfa40
0.204136992
vioscreen_sfa60
0.102767129
vioscreen_sfa80
0.073452053
vioscreen_sfatot
10.85427413
vioscreen_sodium
2257.771575
vioscreen_sorbitol
1.488958824
vioscreen_srvid
18632.0
vioscreen_starch
33.94216342
vioscreen_started
4/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.47944938
vioscreen_sweet_servings
0.17159000000000002
vioscreen_tagatose
4.095315176000001
vioscreen_tfa161t
0.026219175
vioscreen_tfa181t
0.48580819700000005
vioscreen_tfa182t
0.128301375
vioscreen_tgrain
1.8632876040000002
vioscreen_thiamin
0.816164283
vioscreen_threonin
1.882164357
vioscreen_time
30.0
vioscreen_totaltfa
0.641972581
vioscreen_totcla
0.037452055
vioscreen_totfolat
271.74633989999995
vioscreen_totsugar
102.1383027
vioscreen_tryptoph
0.503753411
vioscreen_tyrosine
1.6702188569999998
vioscreen_user_id
18632.0
vioscreen_v_drkgr
0.442219188
vioscreen_v_orange
0.492931544
vioscreen_v_other
0.829780892
vioscreen_v_potato
0.158849314
vioscreen_v_starcy
0.009315069
vioscreen_v_tomato
0.826520528
vioscreen_v_total
2.759397073
vioscreen_valine
2.533287905
vioscreen_veg5_day
4.8
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
17269.46575
vioscreen_vita_rae
968.4135274
vioscreen_vita_re
1810.888014
vioscreen_vitb12
3.0370959969999998
vioscreen_vitb6
1.5224111059999998
vioscreen_vitc
163.1737372
vioscreen_vitd
4.48016441
vioscreen_vitd2
0.313616442
vioscreen_vitd3
4.166547718
vioscreen_vitd_iu
179.2065764
vioscreen_vite_iu
13.71619221
vioscreen_vitk
159.1468964
vioscreen_water
1612.72911
vioscreen_weight
Not provided
vioscreen_wgrain
1.024465733
vioscreen_whole_grain_servings
0.48238000000000003
vioscreen_xylitol
0.039232881000000004
vioscreen_zinc
7.229423962
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)