American Gut Project; 10317.000021991
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633396
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021991
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
21991
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
41.14
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Not provided
collection date
01/08/2015
collection month
January
collection season
Winter
collection time
10:40
collection_timestamp
2015-01-08 10:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
Australia
country of birth
Germany
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
602.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6bd3b230358aa394ba01d584053520b24dd5d4e2db06586c75e09ee582b270a17ddcfe7060e524c5a06eb13aca085951a68084371a73ff20698e7ccc38144a51
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-35.4
level_of_education
High School or GED equilivant
liver_disease
Diagnosed by a medical professional (doctor, physician assistant)
livingwith
No
longitude
149.1
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
Not provided
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000021991
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ACT
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
284009d48bb10a10
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.006547945
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.7773965910000005
vioscreen_addsugar
40.41216289
vioscreen_adsugtot
34.8198095
vioscreen_age
215.0
vioscreen_alanine
3.03325998
vioscreen_alcohol
0.053671233
vioscreen_alcohol_servings
0.00655
vioscreen_alphacar
5438.973288
vioscreen_alphtoce
11.15361596
vioscreen_alphtoco
10.26183447
vioscreen_arginine
3.678932002
vioscreen_ash
24.06619756
vioscreen_aspartam
0.0
vioscreen_aspartic
6.751096961
vioscreen_avcarb
185.3118365
vioscreen_bcodeid
Not provided
vioscreen_betacar
24085.90685
vioscreen_betacryp
127.4926584
vioscreen_betaine
164.01642769999998
vioscreen_betatoco
0.275287639
vioscreen_biochana
0.009013699
vioscreen_bmi
Not provided
vioscreen_caffeine
108.7204409
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.91704
vioscreen_calcium_servings
3.40266
vioscreen_calories
1672.32226
vioscreen_carbo
214.84685359999997
vioscreen_cholest
291.73863439999997
vioscreen_choline
402.4389983
vioscreen_clac9t11
0.147506839
vioscreen_clat10c12
0.028356165
vioscreen_copper
1.640438048
vioscreen_coumest
0.019671232
vioscreen_cystine
0.8468767559999999
vioscreen_d_cheese
0.060219177
vioscreen_d_milk
1.4810411430000001
vioscreen_d_tot_soym
1.917041016
vioscreen_d_total
1.917041016
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.5378082279999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.593698831
vioscreen_discfat_oil
15.30772555
vioscreen_discfat_sol
36.37959118
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002109589
vioscreen_f_citmlb
0.542109534
vioscreen_f_nj_citmlb
0.53909586
vioscreen_f_nj_other
0.924301356
vioscreen_f_nj_total
1.4634795719999998
vioscreen_f_other
0.924301356
vioscreen_f_total
1.466493204
vioscreen_fat
66.1494863
vioscreen_fiber
29.53594553
vioscreen_fibh2o
6.412163554
vioscreen_fibinso
23.23857823
vioscreen_finished
4/15/15
vioscreen_fish_servings
1.38615
vioscreen_fol_deqv
357.756036
vioscreen_fol_nat
341.490518
vioscreen_fol_syn
9.554547703999999
vioscreen_formontn
0.00309589
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.9
vioscreen_fructose
20.10504201
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.49728769799999994
vioscreen_g_total
2.7502739060000003
vioscreen_g_whl
2.2529862080000003
vioscreen_galactos
0.89802731
vioscreen_gammtoco
7.659341556
vioscreen_gender
false
vioscreen_genistn
0.5571232629999999
vioscreen_glac
83.45454837
vioscreen_gltc
93.85934289
vioscreen_glucose
20.47076466
vioscreen_glutamic
12.11496014
vioscreen_glycine
2.491452235
vioscreen_glycitn
0.14868493300000002
vioscreen_grams
3696.371233
vioscreen_hei2010_dairy
8.8
vioscreen_hei2010_empty_calories
14.6
vioscreen_hei2010_fatty_acids
2.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
9.5
vioscreen_hei_milk
8.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.6
vioscreen_hei_sat_fat
3.0
vioscreen_hei_score
71.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
1.681589121
vioscreen_inositol
0.096547939
vioscreen_iron
9.573559236
vioscreen_isoleuc
2.949835456
vioscreen_isomalt
0.0
vioscreen_joules
6996.99589
vioscreen_juice_servings
0.00603
vioscreen_lactitol
0.0
vioscreen_lactose
23.77909621
vioscreen_legumes
0.0
vioscreen_leucine
5.0022467630000005
vioscreen_line_gi
461.4418236000001
vioscreen_low_fat_dairy_serving
0.41871
vioscreen_lutzeax
9581.438356
vioscreen_lycopene
2669.605479
vioscreen_lysine
4.470493097
vioscreen_m_egg
0.837616468
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.46101371
vioscreen_m_frank
0.138520552
vioscreen_m_meat
0.40457533700000003
vioscreen_m_mpf
2.011260234
vioscreen_m_nutsd
1.095534233
vioscreen_m_organ
0.0
vioscreen_m_poult
0.678191804
vioscreen_m_soy
0.028849313999999997
vioscreen_magnes
393.1089041
vioscreen_maltitol
0.0
vioscreen_maltose
4.6625749139999995
vioscreen_mangan
4.8990685869999995
vioscreen_mannitol
0.53821917
vioscreen_methhis3
7.180465406000001
vioscreen_methion
1.447041216
vioscreen_mfa141
0.049780827
vioscreen_mfa161
0.914328797
vioscreen_mfa181
21.85005619
vioscreen_mfa201
0.289698603
vioscreen_mfa221
0.074109597
vioscreen_mfatot
23.26476884
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
10.26183447
vioscreen_nccglbr
147.5619114
vioscreen_nccglgr
103.2128639
vioscreen_niacin
17.90753291
vioscreen_niacineq
30.291379499999998
vioscreen_nitrogen
10.89095877
vioscreen_non_fried_fish_servings
0.95865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5366299559999999
vioscreen_oxalic
372.6154538
vioscreen_oxalicm
362.55393839999994
vioscreen_pantothe
6.31443841
vioscreen_pectins
5.759259284
vioscreen_pfa182
10.72915173
vioscreen_pfa183
1.299807865
vioscreen_pfa184
0.015589043
vioscreen_pfa204
0.117671225
vioscreen_pfa205
0.064520546
vioscreen_pfa225
0.02317808
vioscreen_pfa226
0.133945204
vioscreen_pfatot
12.45101402
vioscreen_phenylal
2.959780675
vioscreen_phosphor
1282.538014
vioscreen_phytic
603.7414812000001
vioscreen_pinitol
0.026410957000000002
vioscreen_potass
3791.688014
vioscreen_procdate
10/28/15
vioscreen_proline
4.114793918999999
vioscreen_protanim
38.85920377
vioscreen_protein
67.20196918
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.33698363
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
477.0
vioscreen_retinol
394.83968319999997
vioscreen_rgrain
0.753342469
vioscreen_ribofla
1.9488493619999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.87825
vioscreen_satoco
0.0
vioscreen_selenium
94.00761986
vioscreen_serine
3.258520508
vioscreen_sfa100
0.677150653
vioscreen_sfa120
0.8492327959999999
vioscreen_sfa140
2.458493084
vioscreen_sfa160
12.73235499
vioscreen_sfa170
0.135013716
vioscreen_sfa180
5.212712034
vioscreen_sfa200
0.157315074
vioscreen_sfa220
0.206054792
vioscreen_sfa40
0.812547908
vioscreen_sfa60
0.537506856
vioscreen_sfa80
0.406109619
vioscreen_sfatot
24.40233037
vioscreen_sodium
4343.117808
vioscreen_sorbitol
0.803753328
vioscreen_srvid
18516.0
vioscreen_starch
60.23027611
vioscreen_started
4/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.19172464
vioscreen_sweet_servings
0.18991
vioscreen_tagatose
3.005452028
vioscreen_tfa161t
0.026356163999999998
vioscreen_tfa181t
1.614136913
vioscreen_tfa182t
0.279506882
vioscreen_tgrain
2.687589128
vioscreen_thiamin
1.221123097
vioscreen_threonin
2.726739753
vioscreen_time
29.0
vioscreen_totaltfa
2.0895342269999997
vioscreen_totcla
0.175945209
vioscreen_totfolat
351.0450557
vioscreen_totsugar
104.94375
vioscreen_tryptoph
0.744356087
vioscreen_tyrosine
2.408219178
vioscreen_user_id
18516.0
vioscreen_v_drkgr
0.770657558
vioscreen_v_orange
1.40336981
vioscreen_v_other
1.402027454
vioscreen_v_potato
0.7751780890000001
vioscreen_v_starcy
0.15057534
vioscreen_v_tomato
0.22660275800000002
vioscreen_v_total
4.728383522
vioscreen_valine
3.529068787
vioscreen_veg5_day
8.0
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.5
vioscreen_visit
1.0
vioscreen_vita_iu
46097.89589
vioscreen_vita_rae
2633.935959
vioscreen_vita_re
4873.030479
vioscreen_vitb12
4.085424805
vioscreen_vitb6
2.091917942
vioscreen_vitc
152.1155608
vioscreen_vitd
7.162356191000001
vioscreen_vitd2
0.0
vioscreen_vitd3
7.162356191000001
vioscreen_vitd_iu
286.49424760000005
vioscreen_vite_iu
15.29422223
vioscreen_vitk
430.9886558
vioscreen_water
3346.47363
vioscreen_weight
Not provided
vioscreen_wgrain
1.934246575
vioscreen_whole_grain_servings
2.25299
vioscreen_xylitol
0.045616443
vioscreen_zinc
9.696219499
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
112.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)