Human gut MAG #56 derived from sample SRS015217
Lachnospiraceae bacterium
ENA-FIRST-PUBLIC
2019-01-29T17:02:53Z
ENA-LAST-UPDATE
2019-01-28T22:39:23Z
External Id
SAMEA5278199
INSDC center name
DOE JGI
INSDC first public
2019-01-29T17:02:53Z
INSDC last update
2019-01-28T22:39:23Z
INSDC status
public
Submitter Id
HGM12593
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MegaHIT v1.1.1
binning parameters
default
binning software
MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
collection date
2018-01-01
completeness score
94.4
completeness software
CheckM v1.0.7
contamination score
0.0
environment (biome)
human gut
environment (feature)
human-associated habitat
environment (material)
faeces
geographic location (country and/or sea)
USA
geographic location (latitude)
37.09024
geographic location (longitude)
-95.712891
investigation type
metagenome-assembled genome
isolation source
human stool
metagenomic source
408170
project name
Global Human Gut MAGs
sample derived from
SRS883293
sample name
HGM12593
scientific_name
Lachnospiraceae bacterium
sequencing method
Illumina Genome Analyzer II
taxonomic identity marker
multi-marker approach