American Gut Project; 10317.000030393
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634199
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030393
acid_reflux
Not provided
acne medication
true
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030393
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
39.54
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-20
collection month
July
collection season
Summer
collection time
06:30
collection_timestamp
2015-07-20 06:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
91.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
df467fd38a37f77c515d04514e3c93e6a0e8959246880f2baaaefc808b426e9d7e50ed74053779b297a1a119026b8114f75b5e273146297ae7254995f571c083
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030393
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
6f461d8b8b522a8f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.361726024
vioscreen_a_cal
147.15244009999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.705369756
vioscreen_addsugar
42.90539651
vioscreen_adsugtot
39.78655019
vioscreen_age
215.0
vioscreen_alanine
5.018055704
vioscreen_alcohol
19.90775364
vioscreen_alcohol_servings
1.3617299999999999
vioscreen_alphacar
1184.2985449999999
vioscreen_alphtoce
17.65159059
vioscreen_alphtoco
16.09578205
vioscreen_arginine
5.849808032
vioscreen_ash
32.47662671
vioscreen_aspartam
0.0
vioscreen_aspartic
9.203779163
vioscreen_avcarb
117.6853382
vioscreen_bcodeid
Not provided
vioscreen_betacar
6836.166437999999
vioscreen_betacryp
94.61501498
vioscreen_betaine
58.44827162
vioscreen_betatoco
0.263726012
vioscreen_biochana
0.012547945
vioscreen_bmi
Not provided
vioscreen_caffeine
546.5890411
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.01685
vioscreen_calcium_servings
3.7184699999999995
vioscreen_calories
2494.840753
vioscreen_carbo
137.66814
vioscreen_cholest
531.1126284
vioscreen_choline
560.2976884
vioscreen_clac9t11
0.24430134399999998
vioscreen_clat10c12
0.06126027
vioscreen_copper
1.848218944
vioscreen_coumest
0.320164385
vioscreen_cystine
1.201205403
vioscreen_d_cheese
0.72690413
vioscreen_d_milk
0.5402191999999999
vioscreen_d_tot_soym
2.0168493819999997
vioscreen_d_total
2.0168493819999997
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.535698627
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.42871261
vioscreen_discfat_oil
79.44838399
vioscreen_discfat_sol
57.50490689
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.48953422700000004
vioscreen_f_nj_citmlb
0.485671245
vioscreen_f_nj_other
0.038273972999999996
vioscreen_f_nj_total
0.5239726029999999
vioscreen_f_other
0.038273972999999996
vioscreen_f_total
0.527835585
vioscreen_fat
162.5365261
vioscreen_fiber
19.984878
vioscreen_fibh2o
7.737835777000001
vioscreen_fibinso
12.316028999999999
vioscreen_finished
7/17/15
vioscreen_fish_servings
2.96096
vioscreen_fol_deqv
397.1470462
vioscreen_fol_nat
378.1254281
vioscreen_fol_syn
11.18005471
vioscreen_formontn
0.001287671
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.1
vioscreen_fructose
11.92252247
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.594904066
vioscreen_g_total
0.70632876
vioscreen_g_whl
0.11139726
vioscreen_galactos
1.066657497
vioscreen_gammtoco
14.27863067
vioscreen_gender
false
vioscreen_genistn
0.350602743
vioscreen_glac
27.19854987
vioscreen_gltc
29.80646672
vioscreen_glucose
14.51471265
vioscreen_glutamic
17.35405608
vioscreen_glycine
4.31457553
vioscreen_glycitn
0.060657533
vioscreen_grams
4892.305479
vioscreen_hei2010_dairy
6.2
vioscreen_hei2010_empty_calories
15.1
vioscreen_hei2010_fatty_acids
6.9
vioscreen_hei2010_fruit
1.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.6
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
1.3
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.2
vioscreen_hei_non_juice_frt
2.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
2.876685239
vioscreen_inositol
0.13630137
vioscreen_iron
10.51087596
vioscreen_isoleuc
4.7028768460000006
vioscreen_isomalt
0.0
vioscreen_joules
10438.41575
vioscreen_juice_servings
0.00773
vioscreen_lactitol
0.0
vioscreen_lactose
18.44361622
vioscreen_legumes
0.001260274
vioscreen_leucine
7.93238308
vioscreen_line_gi
161.16108730000002
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
5560.79726
vioscreen_lycopene
3237.141438
vioscreen_lysine
7.734546902000001
vioscreen_m_egg
1.029232914
vioscreen_m_fish_hi
0.831068483
vioscreen_m_fish_lo
0.856219232
vioscreen_m_frank
0.079150683
vioscreen_m_meat
3.362739458
vioscreen_m_mpf
7.233123527999999
vioscreen_m_nutsd
1.157589011
vioscreen_m_organ
0.315835613
vioscreen_m_poult
1.788082091
vioscreen_m_soy
0.010301369
vioscreen_magnes
329.64199489999993
vioscreen_maltitol
0.0
vioscreen_maltose
0.861287658
vioscreen_mangan
3.779698536
vioscreen_mannitol
0.368493151
vioscreen_methhis3
25.57451841
vioscreen_methion
2.479013772
vioscreen_mfa141
0.21616440899999997
vioscreen_mfa161
2.434027183
vioscreen_mfa181
60.19835724
vioscreen_mfa201
0.886054888
vioscreen_mfa221
0.12430137699999999
vioscreen_mfatot
64.17295591
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.09578205
vioscreen_nccglbr
79.19731914
vioscreen_nccglgr
55.39599208
vioscreen_niacin
22.02238469
vioscreen_niacineq
39.46200235
vioscreen_nitrogen
16.09895923
vioscreen_non_fried_fish_servings
2.96096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
5.249040494
vioscreen_oxalic
333.03097169999995
vioscreen_oxalicm
299.56113010000007
vioscreen_pantothe
8.698355897
vioscreen_pectins
3.5747401410000004
vioscreen_pfa182
31.91493204
vioscreen_pfa183
4.782711834
vioscreen_pfa184
0.030657532999999997
vioscreen_pfa204
0.248739708
vioscreen_pfa205
0.12041097099999999
vioscreen_pfa225
0.05391780400000001
vioscreen_pfa226
0.261726024
vioscreen_pfatot
37.59235873
vioscreen_phenylal
4.333835884
vioscreen_phosphor
1612.667808
vioscreen_phytic
339.842744
vioscreen_pinitol
0.00849315
vioscreen_potass
3760.4609590000005
vioscreen_procdate
10/28/15
vioscreen_proline
5.754821945
vioscreen_protanim
82.41594071
vioscreen_protein
99.66733733
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.24525899
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
283.0
vioscreen_retinol
1042.8375
vioscreen_rgrain
0.534520565
vioscreen_ribofla
2.855424604
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.53384
vioscreen_satoco
0.0
vioscreen_selenium
124.5634418
vioscreen_serine
4.620164678
vioscreen_sfa100
0.9700274740000001
vioscreen_sfa120
1.042712235
vioscreen_sfa140
4.101205653
vioscreen_sfa160
26.93838292
vioscreen_sfa170
0.22791777300000002
vioscreen_sfa180
11.57479399
vioscreen_sfa200
0.438383505
vioscreen_sfa220
0.389451996
vioscreen_sfa40
1.126821858
vioscreen_sfa60
0.6756438370000001
vioscreen_sfa80
0.450082188
vioscreen_sfatot
48.44317744
vioscreen_sodium
6808.691096
vioscreen_sorbitol
0.082767116
vioscreen_srvid
20178.0
vioscreen_starch
15.13274026
vioscreen_started
7/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
38.30534568
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
6.871205453
vioscreen_tfa161t
0.105506855
vioscreen_tfa181t
2.283917822
vioscreen_tfa182t
0.7381644470000001
vioscreen_tgrain
0.631506849
vioscreen_thiamin
1.209397157
vioscreen_threonin
4.039890237
vioscreen_time
24.0
vioscreen_totaltfa
3.186054219
vioscreen_totcla
0.304191798
vioscreen_totfolat
389.3054795
vioscreen_totsugar
85.79562286
vioscreen_tryptoph
1.0482191109999999
vioscreen_tyrosine
3.6473151219999997
vioscreen_user_id
20178.0
vioscreen_v_drkgr
0.754410919
vioscreen_v_orange
0.203999997
vioscreen_v_other
2.229835489
vioscreen_v_potato
0.022931507
vioscreen_v_starcy
0.085534245
vioscreen_v_tomato
0.53975341
vioscreen_v_total
3.836493004
vioscreen_valine
5.359451587
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.7
vioscreen_visit
1.0
vioscreen_vita_iu
15935.36301
vioscreen_vita_rae
1665.8092470000001
vioscreen_vita_re
2288.776027
vioscreen_vitb12
9.974547169
vioscreen_vitb6
2.1520272030000003
vioscreen_vitc
128.58486729999998
vioscreen_vitd
9.651424042
vioscreen_vitd2
0.0
vioscreen_vitd3
9.651424042
vioscreen_vitd_iu
386.0569617
vioscreen_vite_iu
23.96356485
vioscreen_vitk
355.3911815
vioscreen_water
4469.049658
vioscreen_weight
Not provided
vioscreen_wgrain
0.09701369800000001
vioscreen_whole_grain_servings
0.1114
vioscreen_xylitol
0.060383564
vioscreen_zinc
13.37575316
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
111.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)