American Gut Project; 10317.000022634
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632544
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022634
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22634
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1975.0
bmi
22.24
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-02-02
collection month
February
collection season
Winter
collection time
09:00
collection_timestamp
2015-02-02 09:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
313.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Depends on the season
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
5fad860bef8e8ad29fb984638bf98be4cf1f25e418cca8a8a4c90d1f055224e5867a19b896d15bd8fc7af3a54beb429df04d6abc558aa5b70e424fcb01b59439
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022634
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
2d8a30c55aece977
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.85364405
vioscreen_addsugar
12.0964924
vioscreen_adsugtot
11.3681654
vioscreen_age
215.0
vioscreen_alanine
5.574520414
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
6070.408904
vioscreen_alphtoce
32.031402500000006
vioscreen_alphtoco
30.41808112
vioscreen_arginine
6.495972683
vioscreen_ash
25.78112425
vioscreen_aspartam
0.0
vioscreen_aspartic
10.85964389
vioscreen_avcarb
118.8778039
vioscreen_bcodeid
Not provided
vioscreen_betacar
38483.54247
vioscreen_betacryp
389.8454623
vioscreen_betaine
135.3024294
vioscreen_betatoco
0.39263013
vioscreen_biochana
0.005917808
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.07181
vioscreen_calcium_servings
1.92625
vioscreen_calories
2613.370548
vioscreen_carbo
151.98161389999999
vioscreen_cholest
367.1691353
vioscreen_choline
532.7925514
vioscreen_clac9t11
0.10043835599999999
vioscreen_clat10c12
0.042767125
vioscreen_copper
1.87243853
vioscreen_coumest
0.00030137
vioscreen_cystine
1.233479455
vioscreen_d_cheese
0.001808219
vioscreen_d_milk
0.069945202
vioscreen_d_tot_soym
0.07180821700000001
vioscreen_d_total
0.07180821700000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.015863013999999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.810356245
vioscreen_discfat_oil
131.63074699999999
vioscreen_discfat_sol
15.69312393
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.012958903999999999
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.11504110000000001
vioscreen_f_nj_total
0.11504110000000001
vioscreen_f_other
0.11504110000000001
vioscreen_f_total
0.12802740599999998
vioscreen_fat
184.163506
vioscreen_fiber
33.10545537
vioscreen_fibh2o
8.005807871
vioscreen_fibinso
25.14342359
vioscreen_finished
2/1/15
vioscreen_fish_servings
4.22462
vioscreen_fol_deqv
479.8547089
vioscreen_fol_nat
477.1087757
vioscreen_fol_syn
1.6151233409999999
vioscreen_formontn
0.002136986
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.3
vioscreen_fructose
9.54487706
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.054876709
vioscreen_g_total
0.838712342
vioscreen_g_whl
0.7838356329999999
vioscreen_galactos
0.09087671800000001
vioscreen_gammtoco
14.34901407
vioscreen_gender
false
vioscreen_genistn
0.029726026000000003
vioscreen_glac
58.01994328
vioscreen_gltc
69.07914705
vioscreen_glucose
9.997342546
vioscreen_glutamic
15.89778066
vioscreen_glycine
4.997068306
vioscreen_glycitn
0.00005479999999999999
vioscreen_grams
3923.843493
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.6
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.3
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
0.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.3
vioscreen_hei_score
59.7
vioscreen_hei_sodium
1.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
2.912657855
vioscreen_inositol
0.01419178
vioscreen_iron
15.33383455
vioscreen_isoleuc
4.48569871
vioscreen_isomalt
0.0
vioscreen_joules
10934.33973
vioscreen_juice_servings
0.02592
vioscreen_lactitol
0.0
vioscreen_lactose
0.821780855
vioscreen_legumes
0.096136987
vioscreen_leucine
7.523095034
vioscreen_line_gi
325.8548373
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19948.16575
vioscreen_lycopene
1025.113699
vioscreen_lysine
7.6192322610000005
vioscreen_m_egg
0.794794537
vioscreen_m_fish_hi
2.209972476
vioscreen_m_fish_lo
0.197589049
vioscreen_m_frank
0.0
vioscreen_m_meat
5.091534006
vioscreen_m_mpf
8.958712141
vioscreen_m_nutsd
1.7053424990000001
vioscreen_m_organ
0.0
vioscreen_m_poult
1.45969857
vioscreen_m_soy
0.0
vioscreen_magnes
434.33082189999993
vioscreen_maltitol
0.0
vioscreen_maltose
3.542301544
vioscreen_mangan
4.2187941460000005
vioscreen_mannitol
0.21131504
vioscreen_methhis3
33.34868632
vioscreen_methion
2.404657568
vioscreen_mfa141
0.21649314100000003
vioscreen_mfa161
2.722137033
vioscreen_mfa181
97.79964683
vioscreen_mfa201
1.220712322
vioscreen_mfa221
0.43082183399999996
vioscreen_mfatot
102.62254920000001
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
30.41808112
vioscreen_nccglbr
101.40607879999999
vioscreen_nccglgr
70.92717252
vioscreen_niacin
30.85284675
vioscreen_niacineq
49.07936644
vioscreen_nitrogen
16.48043798
vioscreen_non_fried_fish_servings
4.22462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
6.222438865
vioscreen_oxalic
842.3367295
vioscreen_oxalicm
825.1457192
vioscreen_pantothe
7.111506716
vioscreen_pectins
7.021013485
vioscreen_pfa182
30.36249197
vioscreen_pfa183
5.097232516
vioscreen_pfa184
0.094191773
vioscreen_pfa204
0.221506845
vioscreen_pfa205
0.289835598
vioscreen_pfa225
0.1229863
vioscreen_pfa226
0.61906847
vioscreen_pfatot
36.90286815
vioscreen_phenylal
4.251616345
vioscreen_phosphor
1360.330223
vioscreen_phytic
517.6906678
vioscreen_pinitol
0.0
vioscreen_potass
4590.587329
vioscreen_procdate
10/28/15
vioscreen_proline
4.279150725
vioscreen_protanim
73.71901755
vioscreen_protein
101.23824909999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.52350706
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
578.0
vioscreen_retinol
152.473095
vioscreen_rgrain
0.045041097
vioscreen_ribofla
1.575780916
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.8322199999999995
vioscreen_satoco
0.0
vioscreen_selenium
123.4663848
vioscreen_serine
4.430000535
vioscreen_sfa100
0.069616438
vioscreen_sfa120
0.125945198
vioscreen_sfa140
1.114383394
vioscreen_sfa160
23.30931346
vioscreen_sfa170
0.112246579
vioscreen_sfa180
7.703095568999999
vioscreen_sfa200
0.671917766
vioscreen_sfa220
0.521917808
vioscreen_sfa40
0.012739725
vioscreen_sfa60
0.006465753
vioscreen_sfa80
0.006684931999999999
vioscreen_sfatot
33.89835456
vioscreen_sodium
4695.053425
vioscreen_sorbitol
0.001123288
vioscreen_srvid
17040.0
vioscreen_starch
58.28709867
vioscreen_started
2/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.93123261
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.000520548
vioscreen_tfa161t
0.073890414
vioscreen_tfa181t
1.6882464680000002
vioscreen_tfa182t
0.440712372
vioscreen_tgrain
0.82860283
vioscreen_thiamin
1.332548042
vioscreen_threonin
4.215616305
vioscreen_time
71.0
vioscreen_totaltfa
2.2032056
vioscreen_totcla
0.143452046
vioscreen_totfolat
478.723887
vioscreen_totsugar
42.75290828
vioscreen_tryptoph
1.092520601
vioscreen_tyrosine
3.3602465489999997
vioscreen_user_id
17040.0
vioscreen_v_drkgr
1.815561624
vioscreen_v_orange
1.986356218
vioscreen_v_other
2.9510952880000003
vioscreen_v_potato
0.984082198
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.056328771
vioscreen_v_total
7.793424925
vioscreen_valine
5.006438623999999
vioscreen_veg5_day
15.6
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
15.6
vioscreen_visit
1.0
vioscreen_vita_iu
70031.07945
vioscreen_vita_rae
3628.612329
vioscreen_vita_re
7104.752055
vioscreen_vitb12
6.392218937000001
vioscreen_vitb6
3.311397688
vioscreen_vitc
243.41543240000001
vioscreen_vitd
11.48602713
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
11.4852606
vioscreen_vitd_iu
459.4410852
vioscreen_vite_iu
45.40120933
vioscreen_vitk
857.4684932
vioscreen_water
3472.975342
vioscreen_weight
Not provided
vioscreen_wgrain
0.7835616440000001
vioscreen_whole_grain_servings
0.78384
vioscreen_xylitol
0.035205482999999996
vioscreen_zinc
14.54747967
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily