American Gut Project; 10317.000023250
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632658
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023250
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23250
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
23.0
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-02-20
collection month
February
collection season
Winter
collection time
06:00
collection_timestamp
2015-02-20 06:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Not provided
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
195.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
dfe5f5ca9b67359c58c66cd52b78b4b36bc710986cb2530006119dcc1de05a6089f4d4ec8c8da2f51c33901d5d61a27be97067f175149bac24779e518dd39a5e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-88.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023250
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WI
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
d7317130dce98a18
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.310684998
vioscreen_addsugar
35.40214041
vioscreen_adsugtot
18.56460295
vioscreen_age
215.0
vioscreen_alanine
2.624986455
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
4503.865411
vioscreen_alphtoce
11.10780782
vioscreen_alphtoco
10.46649254
vioscreen_arginine
4.20378117
vioscreen_ash
21.069646300000002
vioscreen_aspartam
0.0
vioscreen_aspartic
6.579916925
vioscreen_avcarb
228.6445634
vioscreen_bcodeid
Not provided
vioscreen_betacar
15818.60274
vioscreen_betacryp
127.8676584
vioscreen_betaine
48.40037992
vioscreen_betatoco
0.26821916100000004
vioscreen_biochana
0.039972602999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
83.4963292
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.011009999999999999
vioscreen_calcium_servings
3.67184
vioscreen_calories
1619.5839039999998
vioscreen_carbo
272.9341182
vioscreen_cholest
8.896986034
vioscreen_choline
467.0007705
vioscreen_clac9t11
0.00260274
vioscreen_clat10c12
0.002493151
vioscreen_copper
2.1866575480000003
vioscreen_coumest
3.1407122889999997
vioscreen_cystine
0.8703834009999999
vioscreen_d_cheese
0.009890411
vioscreen_d_milk
0.001123288
vioscreen_d_tot_soym
0.011013698999999998
vioscreen_d_total
0.011013698999999998
vioscreen_d_yogurt
0.0
vioscreen_daidzein
30.75189159
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.467013675
vioscreen_discfat_oil
12.06038367
vioscreen_discfat_sol
2.291725974
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004219178
vioscreen_f_citmlb
0.72000005
vioscreen_f_nj_citmlb
0.72000005
vioscreen_f_nj_other
1.826274046
vioscreen_f_nj_total
2.546273846
vioscreen_f_other
1.826274046
vioscreen_f_total
2.546273846
vioscreen_fat
38.31963827
vioscreen_fiber
44.27208369
vioscreen_fibh2o
11.67898652
vioscreen_fibinso
32.49821811
vioscreen_finished
2/18/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
375.7955908
vioscreen_fol_nat
372.8427226
vioscreen_fol_syn
1.7363836419999998
vioscreen_formontn
0.007123287
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.1
vioscreen_fructose
26.07588827
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.44090409
vioscreen_g_total
5.621561296
vioscreen_g_whl
5.180657708
vioscreen_galactos
0.08756165199999999
vioscreen_gammtoco
5.093123261000001
vioscreen_gender
false
vioscreen_genistn
50.25840646
vioscreen_glac
121.85011770000001
vioscreen_gltc
141.18709330000002
vioscreen_glucose
28.474496999999996
vioscreen_glutamic
11.15082205
vioscreen_glycine
2.630137321
vioscreen_glycitn
6.832438597
vioscreen_grams
2746.9080480000002
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
79.2
vioscreen_hei_sodium
2.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.40473984
vioscreen_inositol
0.145999992
vioscreen_iron
19.20150899
vioscreen_isoleuc
2.364766829
vioscreen_isomalt
0.0
vioscreen_joules
6776.330822
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.023232878
vioscreen_legumes
1.031726074
vioscreen_leucine
4.157835576
vioscreen_line_gi
645.7289384
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5819.658904
vioscreen_lycopene
5474.718493
vioscreen_lysine
3.054410919
vioscreen_m_egg
0.0
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.098931509
vioscreen_m_mpf
0.098931509
vioscreen_m_nutsd
2.177123355
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
3.23832874
vioscreen_magnes
642.739512
vioscreen_maltitol
0.0
vioscreen_maltose
3.162493646
vioscreen_mangan
9.326603302
vioscreen_mannitol
0.922356174
vioscreen_methhis3
0.8873973270000001
vioscreen_methion
0.791753398
vioscreen_mfa141
0.00090411
vioscreen_mfa161
0.117095895
vioscreen_mfa181
13.34561617
vioscreen_mfa201
0.17734245399999998
vioscreen_mfa221
0.004986300999999999
vioscreen_mfatot
13.66326118
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.44767097
vioscreen_nccglbr
169.0192102
vioscreen_nccglgr
118.2421126
vioscreen_niacin
13.42150578
vioscreen_niacineq
25.62460402
vioscreen_nitrogen
10.08413822
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.1215617979999999
vioscreen_oxalic
614.4149829
vioscreen_oxalicm
435.1998288
vioscreen_pantothe
5.3139183569999995
vioscreen_pectins
5.922794708
vioscreen_pfa182
13.15172704
vioscreen_pfa183
1.120493348
vioscreen_pfa184
0.0004931509999999999
vioscreen_pfa204
0.004164384
vioscreen_pfa205
0.0004931509999999999
vioscreen_pfa225
0.0
vioscreen_pfa226
0.000027399999999999995
vioscreen_pfatot
14.28876819
vioscreen_phenylal
2.774849001
vioscreen_phosphor
1237.901798
vioscreen_phytic
2027.6818489999998
vioscreen_pinitol
0.021534247000000003
vioscreen_potass
3300.646575
vioscreen_procdate
10/28/15
vioscreen_proline
2.7273700030000003
vioscreen_protanim
1.8473972269999999
vioscreen_protein
60.94377676
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
59.09676263
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
556.0
vioscreen_retinol
2.8927396589999996
vioscreen_rgrain
1.49169855
vioscreen_ribofla
0.848383572
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.06249
vioscreen_satoco
0.041835618
vioscreen_selenium
134.3915026
vioscreen_serine
3.0990960110000003
vioscreen_sfa100
0.005479451999999999
vioscreen_sfa120
0.067917811
vioscreen_sfa140
0.139424645
vioscreen_sfa160
4.597780996
vioscreen_sfa170
0.004684931
vioscreen_sfa180
1.300958837
vioscreen_sfa200
0.150410963
vioscreen_sfa220
0.329095898
vioscreen_sfa40
0.004547945
vioscreen_sfa60
0.001616438
vioscreen_sfa80
0.00309589
vioscreen_sfatot
6.833096772999999
vioscreen_sodium
2712.306849
vioscreen_sorbitol
0.958931366
vioscreen_srvid
17172.0
vioscreen_starch
119.88401110000001
vioscreen_started
2/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.85484803
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.00279452
vioscreen_tfa161t
0.005808219
vioscreen_tfa181t
0.009095891
vioscreen_tfa182t
0.002520548
vioscreen_tgrain
6.717261077000001
vioscreen_thiamin
1.562657688
vioscreen_threonin
2.168191654
vioscreen_time
16.0
vioscreen_totaltfa
0.017369863
vioscreen_totcla
0.005479451999999999
vioscreen_totfolat
374.57910960000004
vioscreen_totsugar
93.67704409
vioscreen_tryptoph
0.730739813
vioscreen_tyrosine
1.78723295
vioscreen_user_id
17172.0
vioscreen_v_drkgr
0.492712319
vioscreen_v_orange
0.993452098
vioscreen_v_other
0.539205473
vioscreen_v_potato
0.040575344
vioscreen_v_starcy
0.031178083
vioscreen_v_tomato
0.367506848
vioscreen_v_total
2.464602619
vioscreen_valine
2.8127946410000004
vioscreen_veg5_day
4.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.7
vioscreen_visit
1.0
vioscreen_vita_iu
30234.39178
vioscreen_vita_rae
1514.0981160000001
vioscreen_vita_re
3025.304795
vioscreen_vitb12
0.047260269
vioscreen_vitb6
1.537095997
vioscreen_vitc
213.6011986
vioscreen_vitd
6.991396886
vioscreen_vitd2
0.0
vioscreen_vitd3
6.991396886
vioscreen_vitd_iu
279.65587539999996
vioscreen_vite_iu
15.60482261
vioscreen_vitk
279.15500860000003
vioscreen_water
2362.299658
vioscreen_weight
Not provided
vioscreen_wgrain
5.225588947
vioscreen_whole_grain_servings
5.18066
vioscreen_xylitol
0.032657532
vioscreen_zinc
13.4488803
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily