American Gut Project; 10317.000031284
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634280
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031284
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031284
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
30.27
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-08-18
collection month
August
collection season
Summer
collection time
11:00
collection_timestamp
2015-08-18 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
32.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
eca419f69135fe2078bcf062c1c2ba2ecdfc877a2f7f3e5ace29c0c280b5860ab28488e0b877bcd665fd50002cfb22df9d0cabc487e5cc60c066eb1ec89dbfc7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031284
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
95d84e490d33a4bd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
10.10399989
vioscreen_a_cal
1062.559332
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.564931708
vioscreen_addsugar
17.74071062
vioscreen_adsugtot
15.51408123
vioscreen_age
215.0
vioscreen_alanine
3.345917835
vioscreen_alcohol
145.38351880000002
vioscreen_alcohol_servings
10.104
vioscreen_alphacar
135.61103380000003
vioscreen_alphtoce
9.052685547000001
vioscreen_alphtoco
7.666493204
vioscreen_arginine
3.7927667489999997
vioscreen_ash
19.95030367
vioscreen_aspartam
0.0
vioscreen_aspartic
6.035423801
vioscreen_avcarb
209.847881
vioscreen_bcodeid
Not provided
vioscreen_betacar
2603.4366440000003
vioscreen_betacryp
241.58077909999997
vioscreen_betaine
207.1778253
vioscreen_betatoco
0.430082222
vioscreen_biochana
0.008027397
vioscreen_bmi
Not provided
vioscreen_caffeine
106.7619756
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.00173
vioscreen_calcium_servings
2.51342
vioscreen_calories
2874.770548
vioscreen_carbo
230.17915240000002
vioscreen_cholest
215.8105308
vioscreen_choline
296.11337760000004
vioscreen_clac9t11
0.113397259
vioscreen_clat10c12
0.022246578
vioscreen_copper
1.282876712
vioscreen_coumest
0.10890411
vioscreen_cystine
1.047561687
vioscreen_d_cheese
0.9088219209999999
vioscreen_d_milk
0.090410948
vioscreen_d_tot_soym
1.001726041
vioscreen_d_total
1.001726041
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.363698714
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.686493004
vioscreen_discfat_oil
20.32295992
vioscreen_discfat_sol
41.11813731
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000520548
vioscreen_f_citmlb
0.8341095390000001
vioscreen_f_nj_citmlb
0.047753425
vioscreen_f_nj_other
0.262520547
vioscreen_f_nj_total
0.310301355
vioscreen_f_other
0.584821894
vioscreen_f_total
1.4189588569999998
vioscreen_fat
74.51702697
vioscreen_fiber
20.33216369
vioscreen_fibh2o
7.401260167
vioscreen_fibinso
12.89931507
vioscreen_finished
8/15/15
vioscreen_fish_servings
1.49173
vioscreen_fol_deqv
539.3732877
vioscreen_fol_nat
269.8772688
vioscreen_fol_syn
158.359482
vioscreen_formontn
0.000657534
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.12877
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.8
vioscreen_fructose
25.90684932
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
6.45290427
vioscreen_g_total
9.244794119
vioscreen_g_whl
2.791890351
vioscreen_galactos
0.199397236
vioscreen_gammtoco
11.42520468
vioscreen_gender
false
vioscreen_genistn
1.4811506719999998
vioscreen_glac
99.55739512
vioscreen_gltc
108.1096747
vioscreen_glucose
26.06139769
vioscreen_glutamic
15.64709305
vioscreen_glycine
3.0799453530000003
vioscreen_glycitn
0.315945205
vioscreen_grams
2549.847432
vioscreen_hei2010_dairy
2.7
vioscreen_hei2010_empty_calories
4.6
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
3.1
vioscreen_hei2010_greens_beans
2.4
vioscreen_hei2010_protien_foods
3.5
vioscreen_hei2010_refined_grains
8.2
vioscreen_hei2010_score
51.7
vioscreen_hei2010_sea_foods_plant_protiens
3.1
vioscreen_hei2010_sodium
7.8
vioscreen_hei2010_veg
3.0
vioscreen_hei2010_whole_fruit
1.3
vioscreen_hei2010_whole_grains
6.5
vioscreen_hei_drk_g_org_veg_leg
1.2
vioscreen_hei_fruit
3.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.0
vioscreen_hei_milk
2.7
vioscreen_hei_non_juice_frt
1.3
vioscreen_hei_oils
5.9
vioscreen_hei_sat_fat
9.8
vioscreen_hei_score
48.4
vioscreen_hei_sodium
6.2
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
3.0
vioscreen_hei_whl_grains
3.2
vioscreen_height
Not provided
vioscreen_histidin
1.9116438359999999
vioscreen_inositol
0.500602743
vioscreen_iron
15.15520387
vioscreen_isoleuc
3.202219004
vioscreen_isomalt
0.0
vioscreen_joules
12028.03562
vioscreen_juice_servings
2.21731
vioscreen_lactitol
0.0
vioscreen_lactose
1.765616305
vioscreen_legumes
0.112520547
vioscreen_leucine
5.410165949
vioscreen_line_gi
409.14220889999996
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3154.769863
vioscreen_lycopene
9730.860959
vioscreen_lysine
4.354685159
vioscreen_m_egg
0.46668496299999995
vioscreen_m_fish_hi
0.461178087
vioscreen_m_fish_lo
0.38893148299999997
vioscreen_m_frank
0.9854247209999999
vioscreen_m_meat
0.585917852
vioscreen_m_mpf
4.013232756
vioscreen_m_nutsd
0.020630138
vioscreen_m_organ
0.0
vioscreen_m_poult
1.59183567
vioscreen_m_soy
0.094986286
vioscreen_magnes
307.3097175
vioscreen_maltitol
0.0
vioscreen_maltose
4.360137521
vioscreen_mangan
4.688984576
vioscreen_mannitol
0.3103288
vioscreen_methhis3
13.00493097
vioscreen_methion
1.592877114
vioscreen_mfa141
0.065835613
vioscreen_mfa161
1.34095877
vioscreen_mfa181
26.45380191
vioscreen_mfa201
0.31553424199999996
vioscreen_mfa221
0.073726027
vioscreen_mfatot
28.54810841
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
7.629013939
vioscreen_nccglbr
153.9811751
vioscreen_nccglgr
107.7254281
vioscreen_niacin
21.29421955
vioscreen_niacineq
36.18463185
vioscreen_nitrogen
12.26129067
vioscreen_non_fried_fish_servings
1.49173
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.736356385
vioscreen_oxalic
229.63570209999997
vioscreen_oxalicm
175.5442851
vioscreen_pantothe
4.2411778280000005
vioscreen_pectins
2.265588713
vioscreen_pfa182
14.04156143
vioscreen_pfa183
1.4796716140000001
vioscreen_pfa184
0.016438355
vioscreen_pfa204
0.125698633
vioscreen_pfa205
0.061561652
vioscreen_pfa225
0.034465752999999995
vioscreen_pfa226
0.144684935
vioscreen_pfatot
16.03005806
vioscreen_phenylal
3.205671086
vioscreen_phosphor
1236.137414
vioscreen_phytic
784.8872432000001
vioscreen_pinitol
0.009945206
vioscreen_potass
2906.67089
vioscreen_procdate
10/28/15
vioscreen_proline
5.188383588
vioscreen_protanim
42.47934771
vioscreen_protein
75.08573951
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.60712222
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
208.0
vioscreen_retinol
194.3768622
vioscreen_rgrain
6.683972335
vioscreen_ribofla
1.597561604
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.42088
vioscreen_satoco
0.083123288
vioscreen_selenium
131.4529645
vioscreen_serine
3.217122619
vioscreen_sfa100
0.347342462
vioscreen_sfa120
0.386547893
vioscreen_sfa140
1.814712315
vioscreen_sfa160
13.3713118
vioscreen_sfa170
0.100410974
vioscreen_sfa180
5.855423266
vioscreen_sfa200
0.120712333
vioscreen_sfa220
0.061315077
vioscreen_sfa40
0.465397289
vioscreen_sfa60
0.21561645100000001
vioscreen_sfa80
0.148547949
vioscreen_sfatot
23.28213827
vioscreen_sodium
3730.671233
vioscreen_sorbitol
0.599589058
vioscreen_srvid
20392.0
vioscreen_starch
117.6592787
vioscreen_started
8/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.03134364
vioscreen_sweet_servings
0.3031
vioscreen_tagatose
0.553013674
vioscreen_tfa161t
0.04654795
vioscreen_tfa181t
2.175096151
vioscreen_tfa182t
0.390712247
vioscreen_tgrain
10.00838439
vioscreen_thiamin
1.827945072
vioscreen_threonin
2.709972141
vioscreen_time
2885.0
vioscreen_totaltfa
2.7087121410000004
vioscreen_totcla
0.136383579
vioscreen_totfolat
428.23677230000004
vioscreen_totsugar
69.49684289
vioscreen_tryptoph
0.893726171
vioscreen_tyrosine
2.41257575
vioscreen_user_id
20392.0
vioscreen_v_drkgr
0.27202740000000003
vioscreen_v_orange
0.007342465
vioscreen_v_other
0.810986412
vioscreen_v_potato
0.154273976
vioscreen_v_starcy
0.002356164
vioscreen_v_tomato
0.635616438
vioscreen_v_total
1.8828216969999998
vioscreen_valine
3.570575704
vioscreen_veg5_day
2.3
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
3.8
vioscreen_visit
1.0
vioscreen_vita_iu
5302.519863
vioscreen_vita_rae
427.04717469999997
vioscreen_vita_re
659.7159675
vioscreen_vitb12
2.777369836
vioscreen_vitb6
1.611205553
vioscreen_vitc
147.3891267
vioscreen_vitd
4.192109241
vioscreen_vitd2
0.003671233
vioscreen_vitd3
4.188547464
vioscreen_vitd_iu
167.6843696
vioscreen_vite_iu
11.45174979
vioscreen_vitk
170.2022474
vioscreen_water
2037.570205
vioscreen_weight
Not provided
vioscreen_wgrain
3.324465566
vioscreen_whole_grain_servings
2.79189
vioscreen_xylitol
0.057178084000000004
vioscreen_zinc
9.072027504
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
92.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)