American Gut Project; 10317.000027334
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633493
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:52Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027334
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27334
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1975.0
bmi
20.92
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/08/2015
collection month
June
collection season
Summer
collection time
10:35
collection_timestamp
2015-06-08 10:35
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
303.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Not provided
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
683346a0b6bbad98d7d51ad9020769a7a83687ce3a3b29f7f6648c976e19b62e7593105c2aac7707745e8b460cb9886c13e315216f9b500de7d1cec03a880cdd
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
33.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-84.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
Not provided
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Never
roommates
Not provided
roommates_in_study
Not sure
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000027334
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Occasionally (1-2 times/week)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
GA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
c19df0bd1e394b44
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
4.511342506
vioscreen_a_cal
515.3778253
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.215068159
vioscreen_addsugar
16.89964282
vioscreen_adsugtot
14.47137067
vioscreen_age
215.0
vioscreen_alanine
1.869863515
vioscreen_alcohol
65.02052654
vioscreen_alcohol_servings
4.511340000000001
vioscreen_alphacar
1389.156764
vioscreen_alphtoce
10.33482181
vioscreen_alphtoco
6.952082218999999
vioscreen_arginine
2.520575704
vioscreen_ash
11.82158738
vioscreen_aspartam
0.0
vioscreen_aspartic
4.040877167
vioscreen_avcarb
108.28013700000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
5245.909247
vioscreen_betacryp
102.3109803
vioscreen_betaine
82.47932363
vioscreen_betatoco
0.47147935799999996
vioscreen_biochana
0.003287671
vioscreen_bmi
Not provided
vioscreen_caffeine
148.57325559999998
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.19107000000000002
vioscreen_calcium_servings
1.54055
vioscreen_calories
1438.386815
vioscreen_carbo
124.8304688
vioscreen_cholest
109.21176159999999
vioscreen_choline
215.5352526
vioscreen_clac9t11
0.009205479
vioscreen_clat10c12
0.002082192
vioscreen_copper
1.0346305120000001
vioscreen_coumest
0.150684932
vioscreen_cystine
0.632602807
vioscreen_d_cheese
0.09197260199999999
vioscreen_d_milk
0.092383555
vioscreen_d_tot_soym
0.191068508
vioscreen_d_total
0.191068508
vioscreen_d_yogurt
0.0
vioscreen_daidzein
17.331391800000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
6.098355897
vioscreen_discfat_oil
14.19079623
vioscreen_discfat_sol
11.25134311
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00060274
vioscreen_f_citmlb
0.160082193
vioscreen_f_nj_citmlb
0.057698634000000006
vioscreen_f_nj_other
0.475232895
vioscreen_f_nj_total
0.532958943
vioscreen_f_other
0.574410969
vioscreen_f_total
0.734520565
vioscreen_fat
39.59967091
vioscreen_fiber
16.48465727
vioscreen_fibh2o
6.5543015570000005
vioscreen_fibinso
9.937809022
vioscreen_finished
5/23/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
377.14995719999996
vioscreen_fol_nat
208.65196919999997
vioscreen_fol_syn
99.10665668
vioscreen_formontn
0.0007945210000000001
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.5
vioscreen_fructose
9.248164597999999
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.161424276
vioscreen_g_total
2.4722191380000003
vioscreen_g_whl
0.310849292
vioscreen_galactos
0.081397258
vioscreen_gammtoco
13.88657829
vioscreen_gender
false
vioscreen_genistn
24.51781625
vioscreen_glac
46.19018622
vioscreen_gltc
49.73654752
vioscreen_glucose
10.23186136
vioscreen_glutamic
9.133013832
vioscreen_glycine
1.6315346080000002
vioscreen_glycitn
3.3431229260000004
vioscreen_grams
1945.5681510000002
vioscreen_hei2010_dairy
1.0
vioscreen_hei2010_empty_calories
8.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.4
vioscreen_hei2010_veg
4.5
vioscreen_hei2010_whole_fruit
4.6
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.2
vioscreen_hei_grains
2.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.0
vioscreen_hei_non_juice_frt
4.6
vioscreen_hei_oils
8.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
59.0
vioscreen_hei_sodium
6.7
vioscreen_hei_sol_fat_alc_add_sug
2.2
vioscreen_hei_veg
4.5
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
1.0324931940000002
vioscreen_inositol
0.17030136899999998
vioscreen_iron
10.41087329
vioscreen_isoleuc
1.853616626
vioscreen_isomalt
0.0
vioscreen_joules
6018.207534
vioscreen_juice_servings
0.40304
vioscreen_lactitol
0.0
vioscreen_lactose
1.0873972440000002
vioscreen_legumes
0.11427396
vioscreen_leucine
3.1884116810000003
vioscreen_line_gi
258.49058219999995
vioscreen_low_fat_dairy_serving
0.02219
vioscreen_lutzeax
2112.980993
vioscreen_lycopene
2578.241096
vioscreen_lysine
2.125341964
vioscreen_m_egg
0.55824656
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.014356164
vioscreen_m_meat
0.037780824
vioscreen_m_mpf
0.06641095799999999
vioscreen_m_nutsd
0.37931506
vioscreen_m_organ
0.0
vioscreen_m_poult
0.014273973
vioscreen_m_soy
2.549232796
vioscreen_magnes
229.14332190000002
vioscreen_maltitol
0.0
vioscreen_maltose
1.275370057
vioscreen_mangan
2.681288461
vioscreen_mannitol
0.16504109
vioscreen_methhis3
0.310958904
vioscreen_methion
0.679972735
vioscreen_mfa141
0.008684931
vioscreen_mfa161
0.41271236899999997
vioscreen_mfa181
14.379234
vioscreen_mfa201
0.12734246400000002
vioscreen_mfa221
0.003369863
vioscreen_mfatot
15.07134124
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
5.5238083929999995
vioscreen_nccglbr
80.81030608
vioscreen_nccglgr
56.53207941
vioscreen_niacin
11.716028999999999
vioscreen_niacineq
20.10372565
vioscreen_nitrogen
7.302574513
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.162766966
vioscreen_oxalic
183.47688359999998
vioscreen_oxalicm
216.07953769999997
vioscreen_pantothe
4.035781317
vioscreen_pectins
2.565835697
vioscreen_pfa182
11.24958797
vioscreen_pfa183
1.149397341
vioscreen_pfa184
0.000136986
vioscreen_pfa204
0.043095892000000004
vioscreen_pfa205
0.001945205
vioscreen_pfa225
0.000465753
vioscreen_pfa226
0.010739726000000002
vioscreen_pfatot
12.48399775
vioscreen_phenylal
2.062246328
vioscreen_phosphor
700.3914384
vioscreen_phytic
831.0035958999999
vioscreen_pinitol
0.122547934
vioscreen_potass
1978.088699
vioscreen_procdate
10/28/15
vioscreen_proline
2.967890826
vioscreen_protanim
7.416684503
vioscreen_protein
43.53786655
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
36.12143622
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
430.0
vioscreen_retinol
114.1705158
vioscreen_rgrain
2.44876709
vioscreen_ribofla
1.334959014
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.58986
vioscreen_satoco
3.1758902769999997
vioscreen_selenium
49.73124465
vioscreen_serine
2.213479238
vioscreen_sfa100
0.067643837
vioscreen_sfa120
0.296493217
vioscreen_sfa140
0.32835607699999997
vioscreen_sfa160
5.4049303029999995
vioscreen_sfa170
0.033917814
vioscreen_sfa180
1.973479472
vioscreen_sfa200
0.094109574
vioscreen_sfa220
0.123616435
vioscreen_sfa40
0.057561644
vioscreen_sfa60
0.025561643999999998
vioscreen_sfa80
0.04583562
vioscreen_sfatot
8.515344071
vioscreen_sodium
1795.576884
vioscreen_sorbitol
0.376657523
vioscreen_srvid
18750.0
vioscreen_starch
46.08922303
vioscreen_started
5/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.54641615
vioscreen_sweet_servings
0.39265
vioscreen_tagatose
0.368575339
vioscreen_tfa161t
0.002246575
vioscreen_tfa181t
0.436301286
vioscreen_tfa182t
0.118493161
vioscreen_tgrain
3.178794213
vioscreen_thiamin
1.0671781359999999
vioscreen_threonin
1.6107395119999999
vioscreen_time
24.0
vioscreen_totaltfa
0.5648767339999999
vioscreen_totcla
0.012027396000000001
vioscreen_totfolat
307.757256
vioscreen_totsugar
37.60458851
vioscreen_tryptoph
0.503205516
vioscreen_tyrosine
1.4376986569999999
vioscreen_user_id
18750.0
vioscreen_v_drkgr
0.20884930300000001
vioscreen_v_orange
0.323726017
vioscreen_v_other
0.46517814700000004
vioscreen_v_potato
0.12567124
vioscreen_v_starcy
0.047013698
vioscreen_v_tomato
0.15095891
vioscreen_v_total
1.32142451
vioscreen_valine
2.0532056
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.6
vioscreen_visit
1.0
vioscreen_vita_iu
10366.990409999999
vioscreen_vita_rae
613.4743579
vioscreen_vita_re
1112.77774
vioscreen_vitb12
1.676164685
vioscreen_vitb6
1.302766983
vioscreen_vitc
72.69912243
vioscreen_vitd
1.145561574
vioscreen_vitd2
0.107424665
vioscreen_vitd3
1.03816428
vioscreen_vitd_iu
45.82246294
vioscreen_vite_iu
11.39690443
vioscreen_vitk
110.05999569999999
vioscreen_water
1675.354966
vioscreen_weight
Not provided
vioscreen_wgrain
0.730054798
vioscreen_whole_grain_servings
0.31085
vioscreen_xylitol
0.031753425
vioscreen_zinc
5.616986836000001
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)