American Gut Project; 10317.000029581
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634069
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029581
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29581
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
20.7
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-14
collection month
July
collection season
Summer
collection time
09:15
collection_timestamp
2015-07-14 09:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
18.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
da1f814b8a4f5a7413a3725c05ef187f87e23301239205b729f7c03e0ae0fedc7613a68fc27f071b51f87229d93713674b7d52b6a9753f16ff1de6478b5c909d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
52.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-3.8
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029581
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
0ecd9fdd83be4ca8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.002191781
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.998136839
vioscreen_addsugar
11.04668437
vioscreen_adsugtot
9.169068386000001
vioscreen_age
215.0
vioscreen_alanine
1.921068333
vioscreen_alcohol
0.010767123
vioscreen_alcohol_servings
0.0021899999999999997
vioscreen_alphacar
168.57740800000002
vioscreen_alphtoce
18.11139635
vioscreen_alphtoco
16.15638378
vioscreen_arginine
3.569177748
vioscreen_ash
15.76216422
vioscreen_aspartam
0.0
vioscreen_aspartic
5.199206041
vioscreen_avcarb
142.91956340000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
3101.785959
vioscreen_betacryp
100.3672624
vioscreen_betaine
154.3925514
vioscreen_betatoco
0.7761917740000001
vioscreen_biochana
0.026054795
vioscreen_bmi
Not provided
vioscreen_caffeine
213.0551156
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.03082
vioscreen_calcium_servings
1.2469
vioscreen_calories
1501.911644
vioscreen_carbo
170.3130993
vioscreen_cholest
65.08726456
vioscreen_choline
220.0039812
vioscreen_clac9t11
0.004273972
vioscreen_clat10c12
0.00539726
vioscreen_copper
1.7082466019999998
vioscreen_coumest
0.186602762
vioscreen_cystine
0.715999906
vioscreen_d_cheese
0.008684932
vioscreen_d_milk
0.022136986
vioscreen_d_tot_soym
0.030821915
vioscreen_d_total
0.030821915
vioscreen_d_yogurt
0.0
vioscreen_daidzein
7.362712703
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.304410919
vioscreen_discfat_oil
52.99194670000001
vioscreen_discfat_sol
4.941670791
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007945210000000001
vioscreen_f_citmlb
0.330986295
vioscreen_f_nj_citmlb
0.297479457
vioscreen_f_nj_other
1.34493149
vioscreen_f_nj_total
1.642356057
vioscreen_f_other
1.34493149
vioscreen_f_total
1.6758628530000002
vioscreen_fat
77.13756421
vioscreen_fiber
27.39405233
vioscreen_fibh2o
7.096822158999999
vioscreen_fibinso
20.33956015
vioscreen_finished
7/13/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
385.4311216
vioscreen_fol_nat
334.33261989999994
vioscreen_fol_syn
30.07939587
vioscreen_formontn
0.0062191780000000006
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.4
vioscreen_fructose
15.5536989
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.4310684
vioscreen_g_total
4.655616238
vioscreen_g_whl
3.2245478380000003
vioscreen_galactos
0.20463010199999998
vioscreen_gammtoco
16.11715138
vioscreen_gender
false
vioscreen_genistn
9.019479746
vioscreen_glac
70.87737586
vioscreen_gltc
81.954939
vioscreen_glucose
14.83266
vioscreen_glutamic
9.346164651
vioscreen_glycine
2.137315222
vioscreen_glycitn
1.299616565
vioscreen_grams
2766.0657530000003
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
80.6
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.115315142
vioscreen_inositol
0.057013697
vioscreen_iron
10.68714951
vioscreen_isoleuc
1.69926022
vioscreen_isomalt
0.0
vioscreen_joules
6283.996575
vioscreen_juice_servings
0.06704
vioscreen_lactitol
0.0
vioscreen_lactose
0.31347944699999997
vioscreen_legumes
0.23841097100000003
vioscreen_leucine
3.1693697160000003
vioscreen_line_gi
375.2217894
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4787.7380140000005
vioscreen_lycopene
3612.638014
vioscreen_lysine
2.079397374
vioscreen_m_egg
0.314794525
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.080630138
vioscreen_m_mpf
0.123424655
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.0
vioscreen_m_poult
0.04279452
vioscreen_m_soy
0.99599994
vioscreen_magnes
409.1200771
vioscreen_maltitol
0.0
vioscreen_maltose
2.10402715
vioscreen_mangan
7.360437847999999
vioscreen_mannitol
0.323424666
vioscreen_methhis3
0.656493179
vioscreen_methion
0.671397295
vioscreen_mfa141
0.0027397259999999996
vioscreen_mfa161
0.277397281
vioscreen_mfa181
33.01476884
vioscreen_mfa201
0.469041088
vioscreen_mfa221
0.006547945
vioscreen_mfatot
33.82540133
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.15638378
vioscreen_nccglbr
114.3272902
vioscreen_nccglgr
79.96131742
vioscreen_niacin
15.65745264
vioscreen_niacineq
24.68741974
vioscreen_nitrogen
8.445998769
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.657616519
vioscreen_oxalic
435.40415240000004
vioscreen_oxalicm
465.73604450000005
vioscreen_pantothe
3.47797283
vioscreen_pectins
4.332739592
vioscreen_pfa182
24.41243846
vioscreen_pfa183
1.6481095819999998
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.02909589
vioscreen_pfa205
0.001890411
vioscreen_pfa225
0.000219178
vioscreen_pfa226
0.006438356
vioscreen_pfatot
26.11164384
vioscreen_phenylal
2.19235589
vioscreen_phosphor
893.5166096
vioscreen_phytic
1380.117808
vioscreen_pinitol
0.045013699000000004
vioscreen_potass
2779.295548
vioscreen_procdate
10/28/15
vioscreen_proline
2.470164678
vioscreen_protanim
3.8137805680000003
vioscreen_protein
49.14079088
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
45.32793771
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
295.0
vioscreen_retinol
71.78482449
vioscreen_rgrain
0.921643819
vioscreen_ribofla
0.9510136020000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.812
vioscreen_satoco
0.0
vioscreen_selenium
95.50857235
vioscreen_serine
2.423451881
vioscreen_sfa100
0.013041097
vioscreen_sfa120
0.118520554
vioscreen_sfa140
0.195342474
vioscreen_sfa160
8.27093255
vioscreen_sfa170
0.021013697999999997
vioscreen_sfa180
2.714054808
vioscreen_sfa200
0.412465804
vioscreen_sfa220
0.720767086
vioscreen_sfa40
0.007890411
vioscreen_sfa60
0.003780822
vioscreen_sfa80
0.012986302
vioscreen_sfatot
12.81865903
vioscreen_sodium
2844.946404
vioscreen_sorbitol
0.884383612
vioscreen_srvid
20137.0
vioscreen_starch
81.96999144
vioscreen_started
7/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.23227338
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.001945205
vioscreen_tfa161t
0.004931507
vioscreen_tfa181t
0.594164412
vioscreen_tfa182t
0.143534255
vioscreen_tgrain
4.692711901
vioscreen_thiamin
1.168082209
vioscreen_threonin
1.456164384
vioscreen_time
22.0
vioscreen_totaltfa
0.843945145
vioscreen_totcla
0.010383561
vioscreen_totfolat
364.4118579
vioscreen_totsugar
48.83484054
vioscreen_tryptoph
0.542356183
vioscreen_tyrosine
1.417314921
vioscreen_user_id
20137.0
vioscreen_v_drkgr
0.337534259
vioscreen_v_orange
0.020383563
vioscreen_v_other
0.541589063
vioscreen_v_potato
0.573260247
vioscreen_v_starcy
0.04312329
vioscreen_v_tomato
0.290684927
vioscreen_v_total
1.806630257
vioscreen_valine
2.059205439
vioscreen_veg5_day
2.2
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.5
vioscreen_visit
1.0
vioscreen_vita_iu
5633.019863
vioscreen_vita_rae
341.4742937
vioscreen_vita_re
611.1619007
vioscreen_vitb12
0.25942466399999997
vioscreen_vitb6
1.598849362
vioscreen_vitc
81.44243365
vioscreen_vitd
0.68315066
vioscreen_vitd2
0.001041096
vioscreen_vitd3
0.682136933
vioscreen_vitd_iu
27.32602639
vioscreen_vite_iu
24.1102713
vioscreen_vitk
222.2749358
vioscreen_water
2455.286473
vioscreen_weight
Not provided
vioscreen_wgrain
3.771068333
vioscreen_whole_grain_servings
3.22455
vioscreen_xylitol
0.020328767
vioscreen_zinc
7.551971854
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
53.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)