American Gut Project; 10317.000022525
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633035
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:13Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022525
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22525
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1968.0
bmi
38.01
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
04/03/2015
collection month
April
collection season
Spring
collection time
09:30
collection_timestamp
2015-04-03 09:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
180.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6ffd6272a2645dfe74a8894ea0c4edada53bc4944685d56e3644f5ed6926f12383fda13531d1dcc851e0c4be00e41fefa76550e273382f2b122d4b638fe713dc
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-87.6
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022525
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
88d5f4f004e64a11
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.7638082429999999
vioscreen_a_cal
101.860167
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.073123127
vioscreen_addsugar
46.61677012
vioscreen_adsugtot
41.04586366
vioscreen_age
215.0
vioscreen_alanine
2.244383762
vioscreen_alcohol
11.04221961
vioscreen_alcohol_servings
0.76381
vioscreen_alphacar
755.7944348999999
vioscreen_alphtoce
6.822630833
vioscreen_alphtoco
5.918931935
vioscreen_arginine
2.632794608
vioscreen_ash
13.73923106
vioscreen_aspartam
0.0
vioscreen_aspartic
4.34649307
vioscreen_avcarb
117.656357
vioscreen_bcodeid
Not provided
vioscreen_betacar
1961.045034
vioscreen_betacryp
4.532684744
vioscreen_betaine
138.9674229
vioscreen_betatoco
0.355698677
vioscreen_biochana
0.002383561
vioscreen_bmi
Not provided
vioscreen_caffeine
212.0080265
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.7695599999999998
vioscreen_calcium_servings
3.11603
vioscreen_calories
1389.618579
vioscreen_carbo
127.886997
vioscreen_cholest
197.29895119999998
vioscreen_choline
175.05763059999998
vioscreen_clac9t11
0.108410958
vioscreen_clat10c12
0.016931506000000002
vioscreen_copper
0.765616388
vioscreen_coumest
0.076657538
vioscreen_cystine
0.590931514
vioscreen_d_cheese
1.609506769
vioscreen_d_milk
0.160082182
vioscreen_d_tot_soym
1.769561851
vioscreen_d_total
1.769561851
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.40419177700000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.7652877180000002
vioscreen_discfat_oil
18.47893167
vioscreen_discfat_sol
42.01783497
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.003753425
vioscreen_f_nj_citmlb
0.0031232879999999997
vioscreen_f_nj_other
0.002876712
vioscreen_f_nj_total
0.0060273969999999994
vioscreen_f_other
0.002876712
vioscreen_f_total
0.0066575340000000005
vioscreen_fat
68.96065390000001
vioscreen_fiber
10.06838479
vioscreen_fibh2o
3.245123207
vioscreen_fibinso
6.8394792110000004
vioscreen_finished
2/10/15
vioscreen_fish_servings
0.12442
vioscreen_fol_deqv
186.4465967
vioscreen_fol_nat
121.9459332
vioscreen_fol_syn
37.91816406
vioscreen_formontn
0.00139726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
12.32487693
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
1.8390410959999999
vioscreen_g_total
3.5075616710000004
vioscreen_g_whl
1.668575423
vioscreen_galactos
0.19487672600000003
vioscreen_gammtoco
7.103589202
vioscreen_gender
false
vioscreen_genistn
0.588465735
vioscreen_glac
66.49478810000001
vioscreen_gltc
70.65748074
vioscreen_glucose
15.40383535
vioscreen_glutamic
10.89556199
vioscreen_glycine
1.8660274980000002
vioscreen_glycitn
0.09101370199999999
vioscreen_grams
3170.258904
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
8.4
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
2.3
vioscreen_hei2010_protien_foods
4.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
49.3
vioscreen_hei2010_sea_foods_plant_protiens
3.4
vioscreen_hei2010_sodium
1.0
vioscreen_hei2010_veg
2.2
vioscreen_hei2010_whole_fruit
0.1
vioscreen_hei2010_whole_grains
8.0
vioscreen_hei_drk_g_org_veg_leg
2.3
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
8.2
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
0.1
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
45.4
vioscreen_hei_sodium
0.8
vioscreen_hei_sol_fat_alc_add_sug
3.8
vioscreen_hei_veg
2.2
vioscreen_hei_whl_grains
4.0
vioscreen_height
Not provided
vioscreen_histidin
1.477451941
vioscreen_inositol
0.022630137999999998
vioscreen_iron
6.192055731
vioscreen_isoleuc
2.5454245369999997
vioscreen_isomalt
0.0
vioscreen_joules
5814.160959000001
vioscreen_juice_servings
0.00126
vioscreen_lactitol
0.0
vioscreen_lactose
2.987835777
vioscreen_legumes
0.0
vioscreen_leucine
4.215835697
vioscreen_line_gi
233.9618151
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
703.3236728999999
vioscreen_lycopene
1792.5037670000002
vioscreen_lysine
3.614794587
vioscreen_m_egg
0.161726024
vioscreen_m_fish_hi
0.017726027
vioscreen_m_fish_lo
0.05320548
vioscreen_m_frank
0.057452052999999996
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.991260267
vioscreen_m_nutsd
0.659178099
vioscreen_m_organ
0.0
vioscreen_m_poult
1.86290417
vioscreen_m_soy
0.023123287000000003
vioscreen_magnes
195.4029752
vioscreen_maltitol
0.0
vioscreen_maltose
1.677370003
vioscreen_mangan
4.253808928
vioscreen_mannitol
0.07854794
vioscreen_methhis3
8.082520869
vioscreen_methion
1.240821817
vioscreen_mfa141
0.147452064
vioscreen_mfa161
0.941780822
vioscreen_mfa181
20.93405528
vioscreen_mfa201
0.21665753899999998
vioscreen_mfa221
0.00739726
vioscreen_mfatot
22.47654645
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.889425701
vioscreen_nccglbr
101.554634
vioscreen_nccglgr
71.03646725
vioscreen_niacin
12.02328767
vioscreen_niacineq
22.79183701
vioscreen_nitrogen
8.621424845
vioscreen_non_fried_fish_servings
0.12442
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.978383522
vioscreen_oxalic
112.14986090000002
vioscreen_oxalicm
126.2137414
vioscreen_pantothe
3.0886578289999997
vioscreen_pectins
0.9476712159999999
vioscreen_pfa182
10.71041176
vioscreen_pfa183
0.9098903709999999
vioscreen_pfa184
0.00339726
vioscreen_pfa204
0.123424645
vioscreen_pfa205
0.009561643
vioscreen_pfa225
0.023589042999999997
vioscreen_pfa226
0.032849314
vioscreen_pfatot
11.88682176
vioscreen_phenylal
2.401342272
vioscreen_phosphor
977.3984588999999
vioscreen_phytic
542.9943493
vioscreen_pinitol
0.008684932
vioscreen_potass
1182.144606
vioscreen_procdate
10/28/15
vioscreen_proline
3.8857264689999997
vioscreen_protanim
37.64548106
vioscreen_protein
53.24238014
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.597782
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
565.0
vioscreen_retinol
356.598887
vioscreen_rgrain
1.750876565
vioscreen_ribofla
1.1138354990000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.064684933
vioscreen_selenium
79.62139341
vioscreen_serine
2.539780875
vioscreen_sfa100
0.917150712
vioscreen_sfa120
1.531260368
vioscreen_sfa140
3.698054567
vioscreen_sfa160
13.66287859
vioscreen_sfa170
0.155123285
vioscreen_sfa180
5.816712596
vioscreen_sfa200
0.144301365
vioscreen_sfa220
0.149013697
vioscreen_sfa40
1.016794618
vioscreen_sfa60
0.577506831
vioscreen_sfa80
0.445589081
vioscreen_sfatot
28.73120719
vioscreen_sodium
2659.895548
vioscreen_sorbitol
0.041753424
vioscreen_srvid
17128.0
vioscreen_starch
51.43686858
vioscreen_started
2/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.570766
vioscreen_sweet_servings
0.9260299999999999
vioscreen_tagatose
0.301561622
vioscreen_tfa161t
0.095232883
vioscreen_tfa181t
1.422821965
vioscreen_tfa182t
0.32989040000000003
vioscreen_tgrain
3.728191888
vioscreen_thiamin
0.645260202
vioscreen_threonin
2.002767317
vioscreen_time
14.0
vioscreen_totaltfa
1.8864383230000001
vioscreen_totcla
0.125780821
vioscreen_totfolat
159.86330269999996
vioscreen_totsugar
49.18525792
vioscreen_tryptoph
0.646958861
vioscreen_tyrosine
2.044849302
vioscreen_user_id
17128.0
vioscreen_v_drkgr
0.125945209
vioscreen_v_orange
0.12498629800000001
vioscreen_v_other
0.286849328
vioscreen_v_potato
0.085506847
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.056356164
vioscreen_v_total
0.6796711959999999
vioscreen_valine
2.832739592
vioscreen_veg5_day
1.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
1.4
vioscreen_visit
1.0
vioscreen_vita_iu
5090.470547999999
vioscreen_vita_rae
551.6997432000001
vioscreen_vita_re
746.8004281000001
vioscreen_vitb12
1.845917835
vioscreen_vitb6
0.942629963
vioscreen_vitc
26.10016053
vioscreen_vitd
4.214931373
vioscreen_vitd2
0.001068493
vioscreen_vitd3
4.213917688
vioscreen_vitd_iu
168.59725490000002
vioscreen_vite_iu
8.838081923999999
vioscreen_vitk
53.84091931
vioscreen_water
2922.3832190000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.977314988
vioscreen_whole_grain_servings
1.66858
vioscreen_xylitol
0.0072328769999999995
vioscreen_zinc
6.44824687
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
113.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)