American Gut Project; 10317.000002251
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632814
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:26:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000002251
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
72.0
age_corrected
72.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000002251
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by an alternative medicine practitioner
birth year
1942.0
bmi
19.75
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
12/09/2014
collection month
December
collection season
Winter
collection time
17:05
collection_timestamp
2014-12-09 17:05
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
3.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e751f92788e0f513acee4cf47d3a28070c59e0aa8f04edec14a80cf6e34e3d485c41529b2be55c46db33be22d3442d70528f9de4ce4548b1318e0188ce3fe2e6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
26.6
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-80.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000002251
sample type
Mouth
seafood_frequency
Not provided
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
ed3f85d2fc705acb
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.554876793
vioscreen_addsugar
46.58597496
vioscreen_adsugtot
44.00087757
vioscreen_age
214.0
vioscreen_alanine
2.507698623
vioscreen_alcohol
0.0051780820000000005
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
501.4186216
vioscreen_alphtoce
12.71454944
vioscreen_alphtoco
12.03824513
vioscreen_arginine
3.1077533039999996
vioscreen_ash
12.87651969
vioscreen_aspartam
0.0
vioscreen_aspartic
4.393205199
vioscreen_avcarb
82.29958797
vioscreen_bcodeid
Not provided
vioscreen_betacar
4947.32089
vioscreen_betacryp
63.57649294
vioscreen_betaine
46.32230308
vioscreen_betatoco
0.151698627
vioscreen_biochana
0.008191781
vioscreen_bmi
Not provided
vioscreen_caffeine
76.03153359999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.27852
vioscreen_calcium_servings
1.18466
vioscreen_calories
1473.280137
vioscreen_carbo
94.03515625
vioscreen_cholest
145.0450771
vioscreen_choline
192.0072346
vioscreen_clac9t11
0.054000003
vioscreen_clat10c12
0.021753425
vioscreen_copper
1.124054708
vioscreen_coumest
0.009205479
vioscreen_cystine
0.559095869
vioscreen_d_cheese
0.0010136989999999999
vioscreen_d_milk
0.27750685199999997
vioscreen_d_tot_soym
0.27852055800000003
vioscreen_d_total
0.27852055800000003
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.088301379
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.592821931
vioscreen_discfat_oil
68.65991009999999
vioscreen_discfat_sol
15.29487639
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.41846576799999996
vioscreen_f_nj_citmlb
0.414986305
vioscreen_f_nj_other
0.425890403
vioscreen_f_nj_total
0.8408767490000001
vioscreen_f_other
0.425890403
vioscreen_f_total
0.8443561709999999
vioscreen_fat
104.477226
vioscreen_fiber
11.70331362
vioscreen_fibh2o
2.992575115
vioscreen_fibinso
8.756575075
vioscreen_finished
12/9/14
vioscreen_fish_servings
0.70827
vioscreen_fol_deqv
173.0156036
vioscreen_fol_nat
166.94961469999998
vioscreen_fol_syn
3.56983559
vioscreen_formontn
0.002520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.7
vioscreen_fructose
6.545396779
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.223534237
vioscreen_g_total
0.229232872
vioscreen_g_whl
0.005671233
vioscreen_galactos
0.11490410599999999
vioscreen_gammtoco
6.003643381
vioscreen_gender
false
vioscreen_genistn
0.152438354
vioscreen_glac
35.84084707
vioscreen_gltc
38.78361783
vioscreen_glucose
8.620109161
vioscreen_glutamic
7.371369997
vioscreen_glycine
2.441068466
vioscreen_glycitn
0.022273973
vioscreen_grams
3344.592123
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
19.2
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.6
vioscreen_hei2010_sea_foods_plant_protiens
4.6
vioscreen_hei2010_sodium
4.2
vioscreen_hei2010_veg
3.5
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
3.6
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
61.8
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
19.8
vioscreen_hei_veg
3.5
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.365753341
vioscreen_inositol
0.036493155
vioscreen_iron
6.591697881
vioscreen_isoleuc
2.091315115
vioscreen_isomalt
0.0
vioscreen_joules
6164.204795000001
vioscreen_juice_servings
0.006959999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
4.351315015
vioscreen_legumes
0.029863012999999997
vioscreen_leucine
3.46136993
vioscreen_line_gi
161.4128853
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5175.55137
vioscreen_lycopene
646.0334332
vioscreen_lysine
3.528164798
vioscreen_m_egg
0.028164385
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.40367122299999997
vioscreen_m_frank
0.613013699
vioscreen_m_meat
2.587890458
vioscreen_m_mpf
4.625260194
vioscreen_m_nutsd
0.681315048
vioscreen_m_organ
0.0
vioscreen_m_poult
1.020684898
vioscreen_m_soy
0.005068493
vioscreen_magnes
191.51091609999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.9604383490000001
vioscreen_mangan
2.004794688
vioscreen_mannitol
0.11890410300000001
vioscreen_methhis3
16.50276648
vioscreen_methion
1.08583558
vioscreen_mfa141
0.106630122
vioscreen_mfa161
1.6824105040000001
vioscreen_mfa181
49.03088613
vioscreen_mfa201
0.43356164399999997
vioscreen_mfa221
0.001534247
vioscreen_mfatot
51.76619756
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
12.03142391
vioscreen_nccglbr
63.32548159
vioscreen_nccglgr
44.30090432
vioscreen_niacin
11.3700008
vioscreen_niacineq
19.42183487
vioscreen_nitrogen
7.553945045
vioscreen_non_fried_fish_servings
0.70827
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.369123234
vioscreen_oxalic
353.6284675
vioscreen_oxalicm
339.5240582
vioscreen_pantothe
2.669753652
vioscreen_pectins
2.724959198
vioscreen_pfa182
16.70961446
vioscreen_pfa183
2.304356071
vioscreen_pfa184
0.000547945
vioscreen_pfa204
0.079150683
vioscreen_pfa205
0.021890412
vioscreen_pfa225
0.011671233999999999
vioscreen_pfa226
0.031068494
vioscreen_pfatot
19.22429902
vioscreen_phenylal
1.888739933
vioscreen_phosphor
612.7824057999999
vioscreen_phytic
255.13998289999998
vioscreen_pinitol
0.000109589
vioscreen_potass
1669.324144
vioscreen_procdate
10/28/15
vioscreen_proline
2.257863168
vioscreen_protanim
37.26608251
vioscreen_protein
46.46301905
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
9.199863549
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
690.0
vioscreen_retinol
56.34120291
vioscreen_rgrain
0.257260257
vioscreen_ribofla
0.7108767159999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8766299999999999
vioscreen_satoco
0.014931506
vioscreen_selenium
49.3695366
vioscreen_serine
1.878520474
vioscreen_sfa100
0.17695889399999998
vioscreen_sfa120
0.19405479999999997
vioscreen_sfa140
1.150383602
vioscreen_sfa160
16.04528842
vioscreen_sfa170
0.06717809400000001
vioscreen_sfa180
8.030602526000001
vioscreen_sfa200
0.303999977
vioscreen_sfa220
0.173342457
vioscreen_sfa40
0.214767122
vioscreen_sfa60
0.064410954
vioscreen_sfa80
0.067890413
vioscreen_sfatot
26.61709386
vioscreen_sodium
2395.616952
vioscreen_sorbitol
0.228904097
vioscreen_srvid
14916.0
vioscreen_starch
9.72597188
vioscreen_started
12/9/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
41.49419414
vioscreen_sweet_servings
1.6669999999999998
vioscreen_tagatose
7.3837536120000005
vioscreen_tfa161t
0.038684934
vioscreen_tfa181t
0.9038356
vioscreen_tfa182t
0.75556164
vioscreen_tgrain
0.29684929
vioscreen_thiamin
0.598328765
vioscreen_threonin
1.859945386
vioscreen_time
23.0
vioscreen_totaltfa
1.702657621
vioscreen_totcla
0.07473972799999999
vioscreen_totfolat
170.5192958
vioscreen_totsugar
61.88424658
vioscreen_tryptoph
0.48326027200000005
vioscreen_tyrosine
1.550712356
vioscreen_user_id
14916.0
vioscreen_v_drkgr
0.387863034
vioscreen_v_orange
0.151890418
vioscreen_v_other
0.5108767160000001
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.00139726
vioscreen_v_tomato
0.045616437
vioscreen_v_total
1.097671133
vioscreen_valine
2.248959058
vioscreen_veg5_day
2.6
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.2
vioscreen_visit
1.0
vioscreen_vita_iu
8903.474658
vioscreen_vita_rae
492.1605736000001
vioscreen_vita_re
927.9769692
vioscreen_vitb12
2.45693142
vioscreen_vitb6
1.025451995
vioscreen_vitc
65.26246789
vioscreen_vitd
0.631369896
vioscreen_vitd2
0.0
vioscreen_vitd3
0.631369896
vioscreen_vitd_iu
25.25479586
vioscreen_vite_iu
17.97104158
vioscreen_vitk
261.00010699999996
vioscreen_water
3091.313699
vioscreen_weight
Not provided
vioscreen_wgrain
0.039589041
vioscreen_whole_grain_servings
0.0056700000000000006
vioscreen_xylitol
0.018958906
vioscreen_zinc
8.023945179
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
48.0
weight_change
Not provided
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never