10317.000020509; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632923
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020509
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20509
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1979.0
bmi
19.44
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-24
collection month
March
collection season
Spring
collection time
07:00
collection_timestamp
2015-03-24 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
10.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b58438948e3d48b46d2fcc03c3d996018273cdaca302bc2d1ae636394421397afa4d1ca7a91924d6710451c5b7f43e2a663a84a554e0627fe718d51f1523365c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000020509
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f862f078d72d4a45
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.065726027
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.42295858
vioscreen_addsugar
82.123186
vioscreen_adsugtot
74.0252622
vioscreen_age
215.0
vioscreen_alanine
7.867342011
vioscreen_alcohol
1.09369858
vioscreen_alcohol_servings
0.06573
vioscreen_alphacar
5624.736644
vioscreen_alphtoce
25.07914972
vioscreen_alphtoco
20.51583369
vioscreen_arginine
8.896491733
vioscreen_ash
41.4463292
vioscreen_aspartam
15.97526086
vioscreen_aspartic
14.453234699999998
vioscreen_avcarb
285.9254709
vioscreen_bcodeid
Not provided
vioscreen_betacar
30525.61918
vioscreen_betacryp
148.9997003
vioscreen_betaine
248.07262409999998
vioscreen_betatoco
0.43813702299999996
vioscreen_biochana
0.01890411
vioscreen_bmi
Not provided
vioscreen_caffeine
432.0900257
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.1507099999999997
vioscreen_calcium_servings
5.672219999999999
vioscreen_calories
2856.47911
vioscreen_carbo
331.37131850000003
vioscreen_cholest
572.5023973
vioscreen_choline
804.2235445
vioscreen_clac9t11
0.182876733
vioscreen_clat10c12
0.040794524
vioscreen_copper
3.0638631739999997
vioscreen_coumest
0.888657494
vioscreen_cystine
1.958247104
vioscreen_d_cheese
0.48358906799999996
vioscreen_d_milk
1.4521096430000002
vioscreen_d_tot_soym
2.150712356
vioscreen_d_total
2.150712356
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
8.160386343999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.5985756230000003
vioscreen_discfat_oil
15.864576199999998
vioscreen_discfat_sol
60.40561323
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001808219
vioscreen_f_citmlb
0.44430132299999997
vioscreen_f_nj_citmlb
0.43454794700000005
vioscreen_f_nj_other
1.064684891
vioscreen_f_nj_total
1.4992603880000002
vioscreen_f_other
1.064684891
vioscreen_f_total
1.50904123
vioscreen_fat
109.92185359999999
vioscreen_fiber
45.38230415
vioscreen_fibh2o
13.17594446
vioscreen_fibinso
32.31849583
vioscreen_finished
3/21/15
vioscreen_fish_servings
4.31731
vioscreen_fol_deqv
951.9789384
vioscreen_fol_nat
631.4108732999999
vioscreen_fol_syn
188.51119430000003
vioscreen_formontn
0.002986301
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
22.91098834
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.556575409
vioscreen_g_total
6.393643647999999
vioscreen_g_whl
1.83709583
vioscreen_galactos
0.480328745
vioscreen_gammtoco
14.27731566
vioscreen_gender
false
vioscreen_genistn
12.03152825
vioscreen_glac
135.4283818
vioscreen_gltc
147.80129490000002
vioscreen_glucose
23.63947988
vioscreen_glutamic
26.59668504
vioscreen_glycine
6.838548132000001
vioscreen_glycitn
1.575452162
vioscreen_grams
6357.972603
vioscreen_hei2010_dairy
5.8
vioscreen_hei2010_empty_calories
13.7
vioscreen_hei2010_fatty_acids
1.8
vioscreen_hei2010_fruit
3.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.3
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.6
vioscreen_hei_sat_fat
3.5
vioscreen_hei_score
62.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
14.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.1
vioscreen_height
Not provided
vioscreen_histidin
4.230137321
vioscreen_inositol
0.12095889800000001
vioscreen_iron
27.77194189
vioscreen_isoleuc
6.908272687999999
vioscreen_isomalt
0.0
vioscreen_joules
11951.50685
vioscreen_juice_servings
0.01951
vioscreen_lactitol
0.0
vioscreen_lactose
22.51956068
vioscreen_legumes
0.087342469
vioscreen_leucine
11.71123582
vioscreen_line_gi
670.2714897000001
vioscreen_low_fat_dairy_serving
0.23433
vioscreen_lutzeax
25839.56712
vioscreen_lycopene
7252.569863
vioscreen_lysine
11.16394411
vioscreen_m_egg
1.0144383259999998
vioscreen_m_fish_hi
1.235315109
vioscreen_m_fish_lo
1.225068476
vioscreen_m_frank
1.186684888
vioscreen_m_meat
4.415232703
vioscreen_m_mpf
10.52572573
vioscreen_m_nutsd
0.350876732
vioscreen_m_organ
0.315835613
vioscreen_m_poult
2.147643709
vioscreen_m_soy
0.790684948
vioscreen_magnes
658.2338613
vioscreen_maltitol
0.0
vioscreen_maltose
3.066109937
vioscreen_mangan
7.098765919
vioscreen_mannitol
0.771643819
vioscreen_methhis3
37.87750696
vioscreen_methion
3.558931199
vioscreen_mfa141
0.19884929899999998
vioscreen_mfa161
1.8969587769999998
vioscreen_mfa181
34.27039812
vioscreen_mfa201
0.392137041
vioscreen_mfa221
0.19131507399999997
vioscreen_mfatot
37.27506689
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
18.12109375
vioscreen_nccglbr
237.176006
vioscreen_nccglgr
165.9213399
vioscreen_niacin
41.00029431
vioscreen_niacineq
68.76539491
vioscreen_nitrogen
24.39147581
vioscreen_non_fried_fish_servings
4.31731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.94005545
vioscreen_oxalic
1353.108904
vioscreen_oxalicm
1314.755908
vioscreen_pantothe
13.52805544
vioscreen_pectins
7.704328981000001
vioscreen_pfa182
17.44518274
vioscreen_pfa183
2.265178356
vioscreen_pfa184
0.044547950999999995
vioscreen_pfa204
0.31169864199999997
vioscreen_pfa205
0.168849318
vioscreen_pfa225
0.085013701
vioscreen_pfa226
0.378328715
vioscreen_pfatot
20.87684878
vioscreen_phenylal
6.587724743
vioscreen_phosphor
2252.877568
vioscreen_phytic
1068.319606
vioscreen_pinitol
0.02120548
vioscreen_potass
6201.854795
vioscreen_procdate
10/28/15
vioscreen_proline
8.24608171
vioscreen_protanim
108.6486622
vioscreen_protein
151.342348
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
42.69036548
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
517.0
vioscreen_retinol
1111.16464
vioscreen_rgrain
4.323369943
vioscreen_ribofla
4.29284969
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.36731
vioscreen_satoco
5.330547678
vioscreen_selenium
205.43242719999998
vioscreen_serine
6.846465646
vioscreen_sfa100
0.875917785
vioscreen_sfa120
2.37093138
vioscreen_sfa140
3.911424778
vioscreen_sfa160
20.68534354
vioscreen_sfa170
0.1798904
vioscreen_sfa180
10.04101161
vioscreen_sfa200
0.122684939
vioscreen_sfa220
0.099698618
vioscreen_sfa40
0.795342432
vioscreen_sfa60
0.514356138
vioscreen_sfa80
0.584684942
vioscreen_sfatot
40.57852098
vioscreen_sodium
6909.864384
vioscreen_sorbitol
0.565424713
vioscreen_srvid
18354.0
vioscreen_starch
113.49883349999999
vioscreen_started
3/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
75.82065497
vioscreen_sweet_servings
2.51673
vioscreen_tagatose
2.733643916
vioscreen_tfa161t
0.080191782
vioscreen_tfa181t
3.1570138589999996
vioscreen_tfa182t
0.5804383160000001
vioscreen_tgrain
6.764904617999999
vioscreen_thiamin
2.728027177
vioscreen_threonin
6.286163581
vioscreen_time
20.0
vioscreen_totaltfa
3.898328138
vioscreen_totcla
0.22402743
vioscreen_totfolat
819.9156677999999
vioscreen_totsugar
150.47513909999998
vioscreen_tryptoph
1.666082513
vioscreen_tyrosine
5.30583563
vioscreen_user_id
18354.0
vioscreen_v_drkgr
2.010438349
vioscreen_v_orange
1.252849422
vioscreen_v_other
2.261177962
vioscreen_v_potato
0.516958911
vioscreen_v_starcy
0.210493135
vioscreen_v_tomato
0.973041022
vioscreen_v_total
7.22504147
vioscreen_valine
7.824410717999999
vioscreen_veg5_day
13.3
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
14.4
vioscreen_visit
1.0
vioscreen_vita_iu
59392.191779999994
vioscreen_vita_rae
3895.538014
vioscreen_vita_re
6679.915068
vioscreen_vitb12
13.45115047
vioscreen_vitb6
3.914575195
vioscreen_vitc
243.24135269999996
vioscreen_vitd
14.89561617
vioscreen_vitd2
0.002136986
vioscreen_vitd3
14.89347977
vioscreen_vitd_iu
595.8246468
vioscreen_vite_iu
32.31728649
vioscreen_vitk
978.7274829
vioscreen_water
5783.711644
vioscreen_weight
Not provided
vioscreen_wgrain
2.44153434
vioscreen_whole_grain_servings
1.8371
vioscreen_xylitol
0.063369882
vioscreen_zinc
22.94364566
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)