American Gut Project; 10317.000029460
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633723
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029460
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29460
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
29.38
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-28
collection month
June
collection season
Summer
collection time
01:20
collection_timestamp
2015-06-28 01:20
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
43.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d36e3c628eb25869ef05b7a17da6a63e2c641227e68f1af36c40f54f04ee1d13bec450aca5ce2a47d7a70f04457d6067179923a295d6eaab0ec28e3ffa4b48ef
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029460
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
fe0f0236bf15dc34
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.631068733999999
vioscreen_a_cal
555.8206336000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.4428222660000003
vioscreen_addsugar
16.56898545
vioscreen_adsugtot
15.02838185
vioscreen_age
215.0
vioscreen_alanine
2.8542737989999996
vioscreen_alcohol
68.9507973
vioscreen_alcohol_servings
4.631069999999999
vioscreen_alphacar
1659.605822
vioscreen_alphtoce
8.20041136
vioscreen_alphtoco
7.255781785
vioscreen_arginine
3.375506675
vioscreen_ash
18.63999893
vioscreen_aspartam
69.57230308
vioscreen_aspartic
5.976985900000001
vioscreen_avcarb
141.8984268
vioscreen_bcodeid
Not provided
vioscreen_betacar
4843.789041
vioscreen_betacryp
147.4539919
vioscreen_betaine
101.0893622
vioscreen_betatoco
0.253095904
vioscreen_biochana
0.011342465
vioscreen_bmi
Not provided
vioscreen_caffeine
368.7742295
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.79989
vioscreen_calcium_servings
2.04458
vioscreen_calories
1766.190411
vioscreen_carbo
166.3943493
vioscreen_cholest
285.54957189999993
vioscreen_choline
410.3389983
vioscreen_clac9t11
0.059452062
vioscreen_clat10c12
0.01079452
vioscreen_copper
1.236054721
vioscreen_coumest
0.302849297
vioscreen_cystine
0.7888492109999999
vioscreen_d_cheese
0.625917785
vioscreen_d_milk
0.173013692
vioscreen_d_tot_soym
0.799890388
vioscreen_d_total
0.799890388
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.30575342
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.8124382959999998
vioscreen_discfat_oil
16.16216289
vioscreen_discfat_sol
20.72041283
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000630137
vioscreen_f_citmlb
0.85120557
vioscreen_f_nj_citmlb
0.847452158
vioscreen_f_nj_other
0.504547913
vioscreen_f_nj_total
1.352000114
vioscreen_f_other
0.504547913
vioscreen_f_total
1.355753525
vioscreen_fat
46.60352633
vioscreen_fiber
24.4973994
vioscreen_fibh2o
9.396026862000001
vioscreen_fibinso
15.13226937
vioscreen_finished
6/27/15
vioscreen_fish_servings
2.16865
vioscreen_fol_deqv
319.2032534
vioscreen_fol_nat
254.24852310000003
vioscreen_fol_syn
38.16378425
vioscreen_formontn
0.003945205
vioscreen_fried_fish_servings
0.09154
vioscreen_fried_food_servings
0.30136999999999997
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.7
vioscreen_fructose
14.71599823
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.071342406
vioscreen_g_total
2.923698697
vioscreen_g_whl
0.852328784
vioscreen_galactos
0.156986278
vioscreen_gammtoco
8.2721372
vioscreen_gender
false
vioscreen_genistn
0.14747945699999998
vioscreen_glac
69.13893408
vioscreen_gltc
77.84991438
vioscreen_glucose
14.050109699999998
vioscreen_glutamic
10.91715004
vioscreen_glycine
2.437479766
vioscreen_glycitn
0.005232877
vioscreen_grams
4313.411301
vioscreen_hei2010_dairy
3.5
vioscreen_hei2010_empty_calories
8.9
vioscreen_hei2010_fatty_acids
5.9
vioscreen_hei2010_fruit
4.8
vioscreen_hei2010_greens_beans
2.7
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.2
vioscreen_hei_drk_g_org_veg_leg
3.6
vioscreen_hei_fruit
4.8
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.6
vioscreen_hei_sat_fat
9.9
vioscreen_hei_score
63.6
vioscreen_hei_sodium
6.7
vioscreen_hei_sol_fat_alc_add_sug
3.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.543479271
vioscreen_inositol
0.341342498
vioscreen_iron
9.990273839
vioscreen_isoleuc
2.638465693
vioscreen_isomalt
0.0
vioscreen_joules
7389.739041
vioscreen_juice_servings
0.007529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
2.7317260739999996
vioscreen_legumes
0.096767122
vioscreen_leucine
4.392410571
vioscreen_line_gi
364.3613014
vioscreen_low_fat_dairy_serving
0.37112
vioscreen_lutzeax
1665.593836
vioscreen_lycopene
5264.138014
vioscreen_lysine
3.882082085
vioscreen_m_egg
1.042767083
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.478136998
vioscreen_m_frank
0.22342466600000002
vioscreen_m_meat
0.36005479
vioscreen_m_mpf
2.9094248310000004
vioscreen_m_nutsd
1.127616485
vioscreen_m_organ
0.0
vioscreen_m_poult
1.090109629
vioscreen_m_soy
0.000630137
vioscreen_magnes
319.2506421
vioscreen_maltitol
0.0
vioscreen_maltose
1.5540273169999999
vioscreen_mangan
3.3815613630000003
vioscreen_mannitol
0.417287665
vioscreen_methhis3
11.11608251
vioscreen_methion
1.3380549179999999
vioscreen_mfa141
0.020219176999999998
vioscreen_mfa161
0.683178
vioscreen_mfa181
16.33608064
vioscreen_mfa201
0.272520551
vioscreen_mfa221
0.126109586
vioscreen_mfatot
17.55679179
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
7.255781785
vioscreen_nccglbr
110.2564212
vioscreen_nccglgr
77.13175835
vioscreen_niacin
19.32325824
vioscreen_niacineq
31.31468054
vioscreen_nitrogen
10.09208115
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.205150698
vioscreen_oxalic
150.8816246
vioscreen_oxalicm
153.65901110000001
vioscreen_pantothe
6.606795136000001
vioscreen_pectins
3.8849315069999997
vioscreen_pfa182
8.84594459
vioscreen_pfa183
0.801753465
vioscreen_pfa184
0.02849315
vioscreen_pfa204
0.151616439
vioscreen_pfa205
0.10021917300000001
vioscreen_pfa225
0.044520548
vioscreen_pfa226
0.230794515
vioscreen_pfatot
10.26545176
vioscreen_phenylal
2.558328707
vioscreen_phosphor
1052.658134
vioscreen_phytic
516.8129709
vioscreen_pinitol
0.00060274
vioscreen_potass
3202.703425
vioscreen_procdate
10/28/15
vioscreen_proline
3.295945259
vioscreen_protanim
37.86361837
vioscreen_protein
62.07514983
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.21188998
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
358.0
vioscreen_retinol
226.4942637
vioscreen_rgrain
2.107397126
vioscreen_ribofla
1.925013712
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.6604400000000001
vioscreen_satoco
0.0
vioscreen_selenium
87.52503746
vioscreen_serine
2.705287818
vioscreen_sfa100
0.219780804
vioscreen_sfa120
0.242082173
vioscreen_sfa140
1.081917959
vioscreen_sfa160
8.05857569
vioscreen_sfa170
0.053534254
vioscreen_sfa180
3.3548767930000003
vioscreen_sfa200
0.132191791
vioscreen_sfa220
0.195972599
vioscreen_sfa40
0.320383547
vioscreen_sfa60
0.138356154
vioscreen_sfa80
0.100794534
vioscreen_sfatot
14.15117856
vioscreen_sodium
2203.540925
vioscreen_sorbitol
0.355123316
vioscreen_srvid
19991.0
vioscreen_starch
62.83068814
vioscreen_started
6/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
17.2233452
vioscreen_sweet_servings
0.30946999999999997
vioscreen_tagatose
0.8800274570000001
vioscreen_tfa161t
0.011671233999999999
vioscreen_tfa181t
0.989863064
vioscreen_tfa182t
0.210273994
vioscreen_tgrain
2.899150524
vioscreen_thiamin
1.198383655
vioscreen_threonin
2.355041169
vioscreen_time
30.0
vioscreen_totaltfa
1.266657581
vioscreen_totcla
0.071150688
vioscreen_totfolat
292.412286
vioscreen_totsugar
51.37230308
vioscreen_tryptoph
0.719753485
vioscreen_tyrosine
2.025972716
vioscreen_user_id
19991.0
vioscreen_v_drkgr
0.09191780599999999
vioscreen_v_orange
0.318164397
vioscreen_v_other
0.696164317
vioscreen_v_potato
0.943534203
vioscreen_v_starcy
0.22361644600000002
vioscreen_v_tomato
0.614821928
vioscreen_v_total
2.8882193789999997
vioscreen_valine
2.9852599260000003
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
10334.31644
vioscreen_vita_rae
705.4377568
vioscreen_vita_re
1184.382106
vioscreen_vitb12
2.866246388
vioscreen_vitb6
1.955917567
vioscreen_vitc
136.0958583
vioscreen_vitd
5.406438624
vioscreen_vitd2
0.001945206
vioscreen_vitd3
5.404520949
vioscreen_vitd_iu
216.2575449
vioscreen_vite_iu
10.78545256
vioscreen_vitk
94.24803082
vioscreen_water
3979.686644
vioscreen_weight
Not provided
vioscreen_wgrain
0.791780822
vioscreen_whole_grain_servings
0.8523299999999999
vioscreen_xylitol
0.058273974000000006
vioscreen_zinc
8.054219954
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
82.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)