American Gut Project; 10317.000028849
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633647
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:01Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028849
acid_reflux
Not provided
acne medication
Not provided
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28849
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
27.26
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/04/2015
collection month
June
collection season
Summer
collection time
10:28
collection_timestamp
2015-06-04 10:28
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
246.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
1f01bdd4bc8c67e0da46ac8aa4498cee0ac37ffdcffde33e9027d2d551278eea8f6ff5f2cdfac971ecdfed9fc7c562379420a94be927ffd704306e3c404205d6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
32.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-97.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
Not provided
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028849
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
ad12e23f32f5dae4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0056164380000000005
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.7451507989999997
vioscreen_addsugar
15.65991813
vioscreen_adsugtot
14.73849262
vioscreen_age
215.0
vioscreen_alanine
5.546876672000001
vioscreen_alcohol
0.027698629
vioscreen_alcohol_servings
0.00562
vioscreen_alphacar
3558.000685
vioscreen_alphtoce
50.70928403
vioscreen_alphtoco
47.51292808
vioscreen_arginine
10.55597175
vioscreen_ash
36.25460724
vioscreen_aspartam
0.0
vioscreen_aspartic
13.86405581
vioscreen_avcarb
145.13689
vioscreen_bcodeid
Not provided
vioscreen_betacar
35530.46849
vioscreen_betacryp
849.7796232999999
vioscreen_betaine
148.0602954
vioscreen_betatoco
1.8463835419999999
vioscreen_biochana
0.022383562000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
60.72460402
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.10835999999999998
vioscreen_calcium_servings
3.20858
vioscreen_calories
2725.2816780000003
vioscreen_carbo
203.8724743
vioscreen_cholest
258.3269692
vioscreen_choline
583.1844606000001
vioscreen_clac9t11
0.035917813
vioscreen_clat10c12
0.024493152
vioscreen_copper
4.028931667
vioscreen_coumest
0.035808217999999996
vioscreen_cystine
1.496876672
vioscreen_d_cheese
0.06753424599999999
vioscreen_d_milk
0.040821919
vioscreen_d_tot_soym
0.10835616199999999
vioscreen_d_total
0.10835616199999999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.645561615
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.252027371
vioscreen_discfat_oil
88.26504174
vioscreen_discfat_sol
13.78246468
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00630137
vioscreen_f_citmlb
0.894794537
vioscreen_f_nj_citmlb
0.875123324
vioscreen_f_nj_other
1.5699178619999998
vioscreen_f_nj_total
2.4450411030000003
vioscreen_f_other
1.5699178619999998
vioscreen_f_total
2.464712315
vioscreen_fat
179.6840539
vioscreen_fiber
58.73408605
vioscreen_fibh2o
11.94372458
vioscreen_fibinso
46.97769692
vioscreen_finished
6/4/15
vioscreen_fish_servings
2.68519
vioscreen_fol_deqv
955.1446917999999
vioscreen_fol_nat
932.1380992999999
vioscreen_fol_syn
13.51435681
vioscreen_formontn
0.013643836000000001
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
4.9
vioscreen_fructose
26.98964576
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.622931452
vioscreen_g_total
0.92663014
vioscreen_g_whl
0.303698626
vioscreen_galactos
0.285561653
vioscreen_gammtoco
24.36950985
vioscreen_gender
false
vioscreen_genistn
0.747945205
vioscreen_glac
42.5633963
vioscreen_gltc
51.23471747
vioscreen_glucose
24.76742562
vioscreen_glutamic
23.13660103
vioscreen_glycine
6.244986087000001
vioscreen_glycitn
0.159452046
vioscreen_grams
5600.6369859999995
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.3
vioscreen_hei_score
66.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.4
vioscreen_height
Not provided
vioscreen_histidin
2.913452148
vioscreen_inositol
0.12115070900000001
vioscreen_iron
20.80123341
vioscreen_isoleuc
4.3772056269999995
vioscreen_isomalt
0.0
vioscreen_joules
11402.57397
vioscreen_juice_servings
0.03937
vioscreen_lactitol
0.0
vioscreen_lactose
0.357808236
vioscreen_legumes
0.21345204399999998
vioscreen_leucine
8.10567142
vioscreen_line_gi
375.00667810000004
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
39459.65479
vioscreen_lycopene
12374.11918
vioscreen_lysine
5.910547544
vioscreen_m_egg
1.001753465
vioscreen_m_fish_hi
1.300876732
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.012301369
vioscreen_m_meat
1.1923561409999999
vioscreen_m_mpf
2.7348766589999998
vioscreen_m_nutsd
17.41123314
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.024849313999999997
vioscreen_magnes
952.4726027
vioscreen_maltitol
0.0
vioscreen_maltose
1.310328653
vioscreen_mangan
8.692082486
vioscreen_mannitol
0.691561722
vioscreen_methhis3
10.87712302
vioscreen_methion
1.9975616040000002
vioscreen_mfa141
0.029534246
vioscreen_mfa161
1.520657474
vioscreen_mfa181
82.25241331
vioscreen_mfa201
1.5730137659999999
vioscreen_mfa221
0.279452055
vioscreen_mfatot
85.78983305
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
47.51292808
vioscreen_nccglbr
97.86222175
vioscreen_nccglgr
68.46035959
vioscreen_niacin
48.26780287
vioscreen_niacineq
70.59292594
vioscreen_nitrogen
21.03717894
vioscreen_non_fried_fish_servings
2.68519
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.037342312
vioscreen_oxalic
1586.587158
vioscreen_oxalicm
1841.13339
vioscreen_pantothe
9.098494355
vioscreen_pectins
13.36788982
vioscreen_pfa182
44.77257599
vioscreen_pfa183
1.377424433
vioscreen_pfa184
0.057835618
vioscreen_pfa204
0.119397265
vioscreen_pfa205
0.174356163
vioscreen_pfa225
0.066684932
vioscreen_pfa226
0.36156164700000004
vioscreen_pfatot
47.03005672
vioscreen_phenylal
5.591808246
vioscreen_phosphor
2040.689726
vioscreen_phytic
2108.901027
vioscreen_pinitol
0.013178083
vioscreen_potass
6740.753425
vioscreen_procdate
10/28/15
vioscreen_proline
5.950245477999999
vioscreen_protanim
29.30531625
vioscreen_protein
121.8406571
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
92.53923373
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
412.0
vioscreen_retinol
148.88512409999998
vioscreen_rgrain
0.659972601
vioscreen_ribofla
2.169753485
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
7.676710000000001
vioscreen_satoco
0.0
vioscreen_selenium
209.2174015
vioscreen_serine
6.445123876
vioscreen_sfa100
0.146712316
vioscreen_sfa120
0.50663009
vioscreen_sfa140
1.146876672
vioscreen_sfa160
21.50263003
vioscreen_sfa170
0.060876716
vioscreen_sfa180
6.722027504
vioscreen_sfa200
1.1932054490000001
vioscreen_sfa220
2.635424637
vioscreen_sfa40
0.157397273
vioscreen_sfa60
0.090684938
vioscreen_sfa80
0.07882193
vioscreen_sfatot
35.43474422
vioscreen_sodium
5514.488699
vioscreen_sorbitol
0.883452199
vioscreen_srvid
18826.0
vioscreen_starch
42.33194296
vioscreen_started
6/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.56191674
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.003178082
vioscreen_tfa161t
0.013369863000000001
vioscreen_tfa181t
0.642273953
vioscreen_tfa182t
0.07583561700000001
vioscreen_tgrain
0.987780762
vioscreen_thiamin
1.97884973
vioscreen_threonin
4.046876672
vioscreen_time
24.0
vioscreen_totaltfa
0.730630201
vioscreen_totcla
0.061369867
vioscreen_totfolat
945.6524829
vioscreen_totsugar
86.42422409999999
vioscreen_tryptoph
1.338904059
vioscreen_tyrosine
3.9804660739999997
vioscreen_user_id
18826.0
vioscreen_v_drkgr
2.71443841
vioscreen_v_orange
0.820465757
vioscreen_v_other
2.9603284860000003
vioscreen_v_potato
0.11591780199999999
vioscreen_v_starcy
0.010410958
vioscreen_v_tomato
1.435397381
vioscreen_v_total
8.057205158
vioscreen_valine
5.199150523999999
vioscreen_veg5_day
19.4
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
16.1
vioscreen_visit
1.0
vioscreen_vita_iu
63387.517810000005
vioscreen_vita_rae
3293.417123
vioscreen_vita_re
6437.94863
vioscreen_vitb12
3.055287484
vioscreen_vitb6
4.157177733999999
vioscreen_vitc
443.3994007
vioscreen_vitd
7.118767391
vioscreen_vitd2
0.000191781
vioscreen_vitd3
7.118602847000001
vioscreen_vitd_iu
284.75069560000003
vioscreen_vite_iu
70.90353703
vioscreen_vitk
1605.4416099999999
vioscreen_water
5067.862329
vioscreen_weight
Not provided
vioscreen_wgrain
0.32778082
vioscreen_whole_grain_servings
0.3037
vioscreen_xylitol
0.038383565
vioscreen_zinc
17.58550674
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never