American Gut Project; 10317.000011005
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633348
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:43Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000011005
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000011005
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1951.0
bmi
25.66
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
07/03/2015
collection month
July
collection season
Summer
collection time
12:05
collection_timestamp
2015-07-03 12:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1631.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
e34bd1d3bab346ca6e838d218d7fe1190ed02b61ada309b512a02b315216bb6f359187d23faabe512746762ea4ea6484062d8955293ad822feaf92368dc6dd48
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
39.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000011005
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
32e008bb3f19c9ac
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Rarely (less than once/week)
vioscreen_a_bev
2.7289861810000002
vioscreen_a_cal
336.03852739999996
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.14569911
vioscreen_addsugar
78.81925835
vioscreen_adsugtot
69.40555437
vioscreen_age
215.0
vioscreen_alanine
3.412520401
vioscreen_alcohol
42.06879281
vioscreen_alcohol_servings
2.72899
vioscreen_alphacar
236.21395550000003
vioscreen_alphtoce
8.699507705
vioscreen_alphtoco
7.959671312999999
vioscreen_arginine
3.704739004
vioscreen_ash
19.20449353
vioscreen_aspartam
0.0
vioscreen_aspartic
6.853862104
vioscreen_avcarb
212.9431293
vioscreen_bcodeid
Not provided
vioscreen_betacar
7006.634247
vioscreen_betacryp
164.2587329
vioscreen_betaine
105.0580372
vioscreen_betatoco
0.304465767
vioscreen_biochana
0.000383562
vioscreen_bmi
Not provided
vioscreen_caffeine
195.78439640000002
vioscreen_calcium
true
vioscreen_calcium_avg
800.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
1.25296
vioscreen_calcium_servings
2.88567
vioscreen_calories
2004.707192
vioscreen_carbo
234.06378419999996
vioscreen_cholest
275.3547517
vioscreen_choline
354.7212757
vioscreen_clac9t11
0.110986297
vioscreen_clat10c12
0.022547947000000002
vioscreen_copper
1.154383495
vioscreen_coumest
0.144657543
vioscreen_cystine
0.85169845
vioscreen_d_cheese
0.44517809700000005
vioscreen_d_milk
0.22013698199999998
vioscreen_d_tot_soym
1.2529589509999999
vioscreen_d_total
1.2529589509999999
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.34926026200000004
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.267643759
vioscreen_discfat_oil
10.57358934
vioscreen_discfat_sol
34.42122753
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.006109589
vioscreen_f_citmlb
1.9052876509999999
vioscreen_f_nj_citmlb
1.900739612
vioscreen_f_nj_other
1.969013705
vioscreen_f_nj_total
3.869753652
vioscreen_f_other
1.969013705
vioscreen_f_total
3.8742742669999997
vioscreen_fat
60.49838399
vioscreen_fiber
21.12147902
vioscreen_fibh2o
7.8744374729999995
vioscreen_fibinso
13.24046715
vioscreen_finished
6/29/15
vioscreen_fish_servings
1.45346
vioscreen_fol_deqv
349.2895762
vioscreen_fol_nat
217.5663741
vioscreen_fol_syn
77.36809182
vioscreen_formontn
0.000465753
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
6.0
vioscreen_frtsumm
7.7
vioscreen_fructose
22.61370131
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
3.25246582
vioscreen_g_total
4.200931413
vioscreen_g_whl
0.9484383359999999
vioscreen_galactos
1.3009589209999999
vioscreen_gammtoco
6.072410102999999
vioscreen_gender
false
vioscreen_genistn
0.25402738
vioscreen_glac
96.74758134
vioscreen_gltc
104.9055116
vioscreen_glucose
26.36988977
vioscreen_glutamic
13.30734161
vioscreen_glycine
2.932218536
vioscreen_glycitn
0.056219179
vioscreen_grams
3166.64589
vioscreen_hei2010_dairy
4.8
vioscreen_hei2010_empty_calories
8.6
vioscreen_hei2010_fatty_acids
1.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.6
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.7
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
7.2
vioscreen_hei2010_veg
1.8
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.2
vioscreen_hei_drk_g_org_veg_leg
2.1
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
9.8
vioscreen_hei_milk
4.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.4
vioscreen_hei_sat_fat
7.8
vioscreen_hei_score
54.3
vioscreen_hei_sodium
5.7
vioscreen_hei_sol_fat_alc_add_sug
2.8
vioscreen_hei_veg
1.8
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.880054881
vioscreen_inositol
0.34575343700000005
vioscreen_iron
11.50153441
vioscreen_isoleuc
3.151863161
vioscreen_isomalt
0.0
vioscreen_joules
8387.69589
vioscreen_juice_servings
0.009040000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
13.43462917
vioscreen_legumes
0.0076164380000000005
vioscreen_leucine
5.490054447
vioscreen_line_gi
521.9866866
vioscreen_low_fat_dairy_serving
0.72249
vioscreen_lutzeax
4543.4794520000005
vioscreen_lycopene
5897.1767119999995
vioscreen_lysine
4.9480819910000005
vioscreen_m_egg
0.612273961
vioscreen_m_fish_hi
0.610931522
vioscreen_m_fish_lo
0.217342471
vioscreen_m_frank
0.35169861700000005
vioscreen_m_meat
1.91383575
vioscreen_m_mpf
3.6246026860000002
vioscreen_m_nutsd
0.6367945420000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.530794536
vioscreen_m_soy
0.011726028000000001
vioscreen_magnes
301.20449489999993
vioscreen_maltitol
0.0
vioscreen_maltose
6.600383267000001
vioscreen_mangan
3.04778133
vioscreen_mannitol
0.10030136099999999
vioscreen_methhis3
14.32616385
vioscreen_methion
1.627150277
vioscreen_mfa141
0.08372603099999999
vioscreen_mfa161
1.1494245140000001
vioscreen_mfa181
21.43986114
vioscreen_mfa201
0.273698655
vioscreen_mfa221
0.12520547099999998
vioscreen_mfatot
23.41767177
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
7.959671312999999
vioscreen_nccglbr
163.33083259999998
vioscreen_nccglgr
114.28681509999998
vioscreen_niacin
17.97531304
vioscreen_niacineq
29.70214309
vioscreen_nitrogen
11.50178189
vioscreen_non_fried_fish_servings
1.45346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.305479285
vioscreen_oxalic
206.1627354
vioscreen_oxalicm
251.83118580000001
vioscreen_pantothe
5.597890023
vioscreen_pectins
3.792136331
vioscreen_pfa182
7.664685895
vioscreen_pfa183
0.9488491109999999
vioscreen_pfa184
0.027315068999999997
vioscreen_pfa204
0.11734247099999999
vioscreen_pfa205
0.09479452699999999
vioscreen_pfa225
0.044356161
vioscreen_pfa226
0.19090409
vioscreen_pfatot
9.171260301
vioscreen_phenylal
3.1035892019999998
vioscreen_phosphor
1206.436473
vioscreen_phytic
358.8604452
vioscreen_pinitol
0.008164384
vioscreen_potass
3290.106507
vioscreen_procdate
10/28/15
vioscreen_proline
4.86268461
vioscreen_protanim
49.79000428
vioscreen_protein
70.99597603
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.19556132
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
346.0
vioscreen_retinol
247.7708048
vioscreen_rgrain
3.865096252
vioscreen_ribofla
1.9267121619999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.5867899999999999
vioscreen_satoco
0.0
vioscreen_selenium
97.17051584
vioscreen_serine
3.3717803539999998
vioscreen_sfa100
0.482520535
vioscreen_sfa120
0.703150752
vioscreen_sfa140
2.226356318
vioscreen_sfa160
11.69479345
vioscreen_sfa170
0.10284930699999999
vioscreen_sfa180
5.549479947000001
vioscreen_sfa200
0.100082188
vioscreen_sfa220
0.11893150599999999
vioscreen_sfa40
0.582219163
vioscreen_sfa60
0.310465753
vioscreen_sfa80
0.22758904
vioscreen_sfatot
22.51909514
vioscreen_sodium
2718.110616
vioscreen_sorbitol
3.7540828339999996
vioscreen_srvid
20012.0
vioscreen_starch
48.66840218
vioscreen_started
6/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
70.63363656
vioscreen_sweet_servings
1.66575
vioscreen_tagatose
4.7341372139999995
vioscreen_tfa161t
0.07772603
vioscreen_tfa181t
2.209972643
vioscreen_tfa182t
0.330219175
vioscreen_tgrain
4.687698991
vioscreen_thiamin
1.19315035
vioscreen_threonin
2.6713701640000003
vioscreen_time
24.0
vioscreen_totaltfa
2.7102736380000003
vioscreen_totcla
0.134712345
vioscreen_totfolat
294.93439639999997
vioscreen_totsugar
143.1714469
vioscreen_tryptoph
0.7038081759999999
vioscreen_tyrosine
2.539452456
vioscreen_user_id
20012.0
vioscreen_v_drkgr
0.28800000800000003
vioscreen_v_orange
0.048876712999999995
vioscreen_v_other
0.19120548199999998
vioscreen_v_potato
0.043424659000000004
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.22553424600000002
vioscreen_v_total
0.797205426
vioscreen_valine
3.71443841
vioscreen_veg5_day
1.2
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.6
vioscreen_visit
1.0
vioscreen_vita_iu
12841.20822
vioscreen_vita_rae
848.3445205
vioscreen_vita_re
1448.915582
vioscreen_vitb12
4.135972616
vioscreen_vitb6
1.469424731
vioscreen_vitc
135.838902
vioscreen_vitd
4.70860278
vioscreen_vitd2
0.000273973
vioscreen_vitd3
4.708328873999999
vioscreen_vitd_iu
188.3441112
vioscreen_vite_iu
11.85679848
vioscreen_vitk
218.4392337
vioscreen_water
2752.356849
vioscreen_weight
Not provided
vioscreen_wgrain
0.8226301640000001
vioscreen_whole_grain_servings
0.94844
vioscreen_xylitol
0.084219183
vioscreen_zinc
9.835808406
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)