10317.000023235; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632653
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023235
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
50.0
age_corrected
50.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23235
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1965.0
bmi
25.1
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
02/03/2015
collection month
February
collection season
Winter
collection time
08:45
collection_timestamp
2015-02-03 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Plains
elevation
236.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1384dacee72104cc8f966be303c89d80f034cfda0ee7425667b0d39563ba96e27216ebbfa52bd6251cf6b1fa9d3007c9947d647d8d1641e38829da5c8c76995b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.0
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-91.7
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023235
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
dcb251f897ccc71b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.270383568
vioscreen_a_cal
189.6464469
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.54750642
vioscreen_addsugar
71.15613763
vioscreen_adsugtot
68.546875
vioscreen_age
215.0
vioscreen_alanine
4.684301089
vioscreen_alcohol
17.82246629
vioscreen_alcohol_servings
1.2703799999999998
vioscreen_alphacar
148.3882277
vioscreen_alphtoce
6.23906852
vioscreen_alphtoco
5.538657494
vioscreen_arginine
4.418383789
vioscreen_ash
23.18873876
vioscreen_aspartam
0.0
vioscreen_aspartic
8.2610686
vioscreen_avcarb
161.23470680000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
2934.114384
vioscreen_betacryp
40.89542487
vioscreen_betaine
68.8648277
vioscreen_betatoco
0.096219165
vioscreen_biochana
0.002
vioscreen_bmi
Not provided
vioscreen_caffeine
745.7253425
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
3.0314799999999997
vioscreen_calcium_servings
4.75721
vioscreen_calories
1545.855651
vioscreen_carbo
176.0373181
vioscreen_cholest
212.2517765
vioscreen_choline
412.4496147
vioscreen_clac9t11
0.040493153
vioscreen_clat10c12
0.009616438
vioscreen_copper
0.84723285
vioscreen_coumest
0.479095877
vioscreen_cystine
1.0622739190000001
vioscreen_d_cheese
0.001808219
vioscreen_d_milk
0.030821917999999997
vioscreen_d_tot_soym
3.03147976
vioscreen_d_total
3.03147976
vioscreen_d_yogurt
2.998794681
vioscreen_daidzein
0.484849318
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.33153419
vioscreen_discfat_oil
22.35569884
vioscreen_discfat_sol
9.313178243
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.431753415
vioscreen_f_nj_citmlb
0.42794519700000005
vioscreen_f_nj_other
0.026547944
vioscreen_f_nj_total
0.454493149
vioscreen_f_other
0.026547944
vioscreen_f_total
0.458301367
vioscreen_fat
43.20136719
vioscreen_fiber
14.80334172
vioscreen_fibh2o
8.836685306
vioscreen_fibinso
5.968986114
vioscreen_finished
2/2/15
vioscreen_fish_servings
0.8332700000000001
vioscreen_fol_deqv
297.58178510000005
vioscreen_fol_nat
295.4308433
vioscreen_fol_syn
1.264630127
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
8.615425005
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.030931507
vioscreen_g_total
0.16043836
vioscreen_g_whl
0.129506851
vioscreen_galactos
3.663396966
vioscreen_gammtoco
6.492684477
vioscreen_gender
false
vioscreen_genistn
0.16419178199999998
vioscreen_glac
53.36693065
vioscreen_gltc
54.71805437
vioscreen_glucose
8.78556159
vioscreen_glutamic
16.41525979
vioscreen_glycine
3.617835978
vioscreen_glycitn
0.00005479999999999999
vioscreen_grams
6381.326027
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
15.1
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.3
vioscreen_hei2010_sea_foods_plant_protiens
1.9
vioscreen_hei2010_sodium
8.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.7
vioscreen_hei2010_whole_grains
0.6
vioscreen_hei_drk_g_org_veg_leg
3.7
vioscreen_hei_fruit
1.9
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
70.9
vioscreen_hei_sodium
6.5
vioscreen_hei_sol_fat_alc_add_sug
9.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
2.516109602
vioscreen_inositol
0.074849325
vioscreen_iron
5.658054634
vioscreen_isoleuc
4.660027156
vioscreen_isomalt
0.0
vioscreen_joules
6467.861644
vioscreen_juice_servings
0.007529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
44.16449326
vioscreen_legumes
0.0
vioscreen_leucine
7.813671206
vioscreen_line_gi
270.0786387
vioscreen_low_fat_dairy_serving
2.99879
vioscreen_lutzeax
2182.8222600000004
vioscreen_lycopene
5085.423288
vioscreen_lysine
7.655725599
vioscreen_m_egg
0.754027401
vioscreen_m_fish_hi
0.277342475
vioscreen_m_fish_lo
0.197589049
vioscreen_m_frank
0.0
vioscreen_m_meat
0.977561637
vioscreen_m_mpf
5.259808433
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
3.807397126
vioscreen_m_soy
0.0
vioscreen_magnes
326.422667
vioscreen_maltitol
0.0
vioscreen_maltose
0.309561659
vioscreen_mangan
2.560191701
vioscreen_mannitol
0.21923288800000001
vioscreen_methhis3
20.71515143
vioscreen_methion
2.5030412230000003
vioscreen_mfa141
0.025561643999999998
vioscreen_mfa161
0.7113424220000001
vioscreen_mfa181
14.4928216
vioscreen_mfa201
0.241178058
vioscreen_mfa221
0.051013696
vioscreen_mfatot
15.66290534
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
5.538657494
vioscreen_nccglbr
72.62725813
vioscreen_nccglgr
50.79342359
vioscreen_niacin
20.17701199
vioscreen_niacineq
33.25608144
vioscreen_nitrogen
14.50325878
vioscreen_non_fried_fish_servings
0.8332700000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.895315176
vioscreen_oxalic
163.5035959
vioscreen_oxalicm
174.53545590000002
vioscreen_pantothe
10.00008227
vioscreen_pectins
1.875780581
vioscreen_pfa182
10.81835603
vioscreen_pfa183
1.6786850180000001
vioscreen_pfa184
0.010054794
vioscreen_pfa204
0.196219165
vioscreen_pfa205
0.041041097
vioscreen_pfa225
0.043315067
vioscreen_pfa226
0.123260268
vioscreen_pfatot
12.96345115
vioscreen_phenylal
4.262082285
vioscreen_phosphor
1530.826199
vioscreen_phytic
192.9889127
vioscreen_pinitol
0.0
vioscreen_potass
3942.82911
vioscreen_procdate
10/28/15
vioscreen_proline
6.77200008
vioscreen_protanim
82.1153414
vioscreen_protein
91.33832406
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
9.171369997000001
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
577.0
vioscreen_retinol
120.3080479
vioscreen_rgrain
0.029890411000000002
vioscreen_ribofla
3.40043845
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.36874
vioscreen_satoco
0.0
vioscreen_selenium
101.0860445
vioscreen_serine
4.487644143
vioscreen_sfa100
0.152410951
vioscreen_sfa120
0.186219181
vioscreen_sfa140
0.720547945
vioscreen_sfa160
6.482383748999999
vioscreen_sfa170
0.041863013
vioscreen_sfa180
2.586575108
vioscreen_sfa200
0.097671237
vioscreen_sfa220
0.072219185
vioscreen_sfa40
0.191424665
vioscreen_sfa60
0.09769863
vioscreen_sfa80
0.06868493099999999
vioscreen_sfatot
10.95734295
vioscreen_sodium
1960.152055
vioscreen_sorbitol
0.09550685099999999
vioscreen_srvid
17044.0
vioscreen_starch
3.438685253
vioscreen_started
2/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
68.21107128
vioscreen_sweet_servings
0.0
vioscreen_tagatose
21.31553403
vioscreen_tfa161t
0.012082191
vioscreen_tfa181t
0.725150665
vioscreen_tfa182t
0.19153423600000002
vioscreen_tgrain
0.103616438
vioscreen_thiamin
0.897178169
vioscreen_threonin
3.7449864219999998
vioscreen_time
20.0
vioscreen_totaltfa
0.9415616809999999
vioscreen_totcla
0.050410958
vioscreen_totfolat
296.69548369999995
vioscreen_totsugar
136.57634850000002
vioscreen_tryptoph
0.785643862
vioscreen_tyrosine
3.690329021
vioscreen_user_id
17044.0
vioscreen_v_drkgr
0.452520543
vioscreen_v_orange
0.0
vioscreen_v_other
1.4039998930000002
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.76493154
vioscreen_v_total
2.621616646
vioscreen_valine
5.777342412
vioscreen_veg5_day
6.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.2
vioscreen_visit
1.0
vioscreen_vita_iu
5443.8017119999995
vioscreen_vita_rae
372.706036
vioscreen_vita_re
625.1015838999999
vioscreen_vitb12
5.4010133510000005
vioscreen_vitb6
1.7100547480000001
vioscreen_vitc
105.0653253
vioscreen_vitd
2.0072332509999997
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
2.006466048
vioscreen_vitd_iu
80.28933005
vioscreen_vite_iu
8.184987693
vioscreen_vitk
149.5928189
vioscreen_water
6043.063699
vioscreen_weight
Not provided
vioscreen_wgrain
0.073726027
vioscreen_whole_grain_servings
0.12951
vioscreen_xylitol
0.025917807999999997
vioscreen_zinc
11.70336847
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never