American Gut Project; 10317.000020585
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632929
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020585
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20585
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
23.92
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-21
collection month
March
collection season
Spring
collection time
14:40
collection_timestamp
2015-03-21 14:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
24.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f611e87f4ed1dee42ce4d4a2abbab2a212c842dc5d513c4a71d03515abe893f4479d7faee0c73cc67066acc179e78279056a4d49010d7ac7907aeaac9eef0220
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.8
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
1.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
Two
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000020585
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
344573b313a5fe7a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.34076711600000004
vioscreen_a_cal
42.54227312
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.9179460079999995
vioscreen_addsugar
30.56210938
vioscreen_adsugtot
28.09093001
vioscreen_age
215.0
vioscreen_alanine
2.8435888
vioscreen_alcohol
5.379342359
vioscreen_alcohol_servings
0.34076999999999996
vioscreen_alphacar
521.4580908
vioscreen_alphtoce
5.220520521
vioscreen_alphtoco
4.536329463
vioscreen_arginine
3.1554797860000003
vioscreen_ash
15.99137013
vioscreen_aspartam
23.190766800000002
vioscreen_aspartic
5.601588586
vioscreen_avcarb
135.4444456
vioscreen_bcodeid
Not provided
vioscreen_betacar
1769.0527399999999
vioscreen_betacryp
53.7408765
vioscreen_betaine
59.3411601
vioscreen_betatoco
0.15052052300000002
vioscreen_biochana
0.010547945
vioscreen_bmi
Not provided
vioscreen_caffeine
400.61202910000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.9043799999999997
vioscreen_calcium_servings
3.6462199999999996
vioscreen_calories
1628.923801
vioscreen_carbo
149.8598352
vioscreen_cholest
314.3436858
vioscreen_choline
306.2934717
vioscreen_clac9t11
0.241725995
vioscreen_clat10c12
0.047589043
vioscreen_copper
0.797506756
vioscreen_coumest
0.276876727
vioscreen_cystine
0.6963835420000001
vioscreen_d_cheese
1.042712319
vioscreen_d_milk
1.856054855
vioscreen_d_tot_soym
2.904383829
vioscreen_d_total
2.904383829
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.318246585
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.385315192
vioscreen_discfat_oil
8.413890598
vioscreen_discfat_sol
62.27318065
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.00660274
vioscreen_f_nj_citmlb
0.006438356
vioscreen_f_nj_other
0.285589035
vioscreen_f_nj_total
0.29202738699999997
vioscreen_f_other
0.285589035
vioscreen_f_total
0.29219176399999996
vioscreen_fat
84.51123181
vioscreen_fiber
14.40438249
vioscreen_fibh2o
5.714630378
vioscreen_fibinso
8.554847362
vioscreen_finished
3/21/15
vioscreen_fish_servings
0.23192
vioscreen_fol_deqv
232.71397689999998
vioscreen_fol_nat
133.36236090000003
vioscreen_fol_syn
58.40463399
vioscreen_formontn
0.00060274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.6
vioscreen_fructose
4.639698269
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
2.449808199
vioscreen_g_total
3.429891173
vioscreen_g_whl
0.9800822220000001
vioscreen_galactos
0.155068489
vioscreen_gammtoco
6.111807711
vioscreen_gender
false
vioscreen_genistn
0.30339729600000004
vioscreen_glac
62.20484268
vioscreen_gltc
67.44169521
vioscreen_glucose
4.751260167
vioscreen_glutamic
12.78405394
vioscreen_glycine
2.354493525
vioscreen_glycitn
0.022876712999999996
vioscreen_grams
1993.2892120000001
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
6.1
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
0.3
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
47.7
vioscreen_hei2010_sea_foods_plant_protiens
3.7
vioscreen_hei2010_sodium
2.7
vioscreen_hei2010_veg
2.8
vioscreen_hei2010_whole_fruit
2.2
vioscreen_hei2010_whole_grains
4.0
vioscreen_hei_drk_g_org_veg_leg
0.8
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
9.5
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
2.2
vioscreen_hei_oils
4.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
43.0
vioscreen_hei_sodium
2.2
vioscreen_hei_sol_fat_alc_add_sug
4.6
vioscreen_hei_veg
2.8
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
1.870246448
vioscreen_inositol
0.043643836
vioscreen_iron
7.722711767000001
vioscreen_isoleuc
3.057807483
vioscreen_isomalt
0.0
vioscreen_joules
6815.417123
vioscreen_juice_servings
0.00033
vioscreen_lactitol
0.0
vioscreen_lactose
23.52885006
vioscreen_legumes
0.11410959300000001
vioscreen_leucine
5.332603141
vioscreen_line_gi
261.6934717
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
696.0836901
vioscreen_lycopene
3015.359247
vioscreen_lysine
4.603862773
vioscreen_m_egg
0.51205482
vioscreen_m_fish_hi
0.033863013
vioscreen_m_fish_lo
0.09830137300000001
vioscreen_m_frank
0.061095888
vioscreen_m_meat
2.006876739
vioscreen_m_mpf
2.542383314
vioscreen_m_nutsd
0.364876692
vioscreen_m_organ
0.0
vioscreen_m_poult
0.34221918799999995
vioscreen_m_soy
0.001232877
vioscreen_magnes
280.64473460000005
vioscreen_maltitol
0.0
vioscreen_maltose
1.10663009
vioscreen_mangan
2.282109509
vioscreen_mannitol
0.282219163
vioscreen_methhis3
9.950985927
vioscreen_methion
1.520657474
vioscreen_mfa141
0.20810958699999998
vioscreen_mfa161
1.379452055
vioscreen_mfa181
24.50608412
vioscreen_mfa201
0.194986296
vioscreen_mfa221
0.002219178
vioscreen_mfatot
26.54506903
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
4.536329463
vioscreen_nccglbr
109.01792590000001
vioscreen_nccglgr
76.25487479
vioscreen_niacin
16.06723165
vioscreen_niacineq
28.29148116
vioscreen_nitrogen
10.382247300000001
vioscreen_non_fried_fish_servings
0.23192
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.071698667
vioscreen_oxalic
99.59978596
vioscreen_oxalicm
94.06999144
vioscreen_pantothe
5.464574861
vioscreen_pectins
1.280876599
vioscreen_pfa182
7.9990675829999995
vioscreen_pfa183
1.027534297
vioscreen_pfa184
0.002054795
vioscreen_pfa204
0.092273984
vioscreen_pfa205
0.008465753000000001
vioscreen_pfa225
0.010273973
vioscreen_pfa226
0.02320548
vioscreen_pfatot
9.222850225
vioscreen_phenylal
2.9893969389999997
vioscreen_phosphor
1219.938099
vioscreen_phytic
505.6982449
vioscreen_pinitol
0.001260274
vioscreen_potass
2272.8482879999997
vioscreen_procdate
10/28/15
vioscreen_proline
4.646246253999999
vioscreen_protanim
48.64099422
vioscreen_protein
64.4591128
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.81901086
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
516.0
vioscreen_retinol
566.1234589
vioscreen_rgrain
2.38646558
vioscreen_ribofla
2.156301336
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.04989
vioscreen_satoco
0.0
vioscreen_selenium
86.06958476
vioscreen_serine
3.244712182
vioscreen_sfa100
1.3433150619999998
vioscreen_sfa120
2.090164477
vioscreen_sfa140
5.17591837
vioscreen_sfa160
19.26435413
vioscreen_sfa170
0.238876719
vioscreen_sfa180
8.914329382
vioscreen_sfa200
0.113534253
vioscreen_sfa220
0.083753429
vioscreen_sfa40
1.515068493
vioscreen_sfa60
0.942547775
vioscreen_sfa80
0.757890341
vioscreen_sfatot
40.96218964
vioscreen_sodium
2856.78339
vioscreen_sorbitol
0.274438372
vioscreen_srvid
18355.0
vioscreen_starch
63.20276113
vioscreen_started
3/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.771099100000004
vioscreen_sweet_servings
0.67945
vioscreen_tagatose
1.197808253
vioscreen_tfa161t
0.083616445
vioscreen_tfa181t
2.410520789
vioscreen_tfa182t
0.467232858
vioscreen_tgrain
3.609205774
vioscreen_thiamin
1.049643822
vioscreen_threonin
2.5340275180000003
vioscreen_time
43.0
vioscreen_totaltfa
3.045917835
vioscreen_totcla
0.28901365100000004
vioscreen_totfolat
191.7668664
vioscreen_totsugar
62.85225278
vioscreen_tryptoph
0.733643832
vioscreen_tyrosine
2.490821985
vioscreen_user_id
18355.0
vioscreen_v_drkgr
0.020328769
vioscreen_v_orange
0.090000006
vioscreen_v_other
0.37421921
vioscreen_v_potato
0.23498629199999999
vioscreen_v_starcy
0.10419178800000001
vioscreen_v_tomato
0.19421917600000002
vioscreen_v_total
1.017945339
vioscreen_valine
3.574438142
vioscreen_veg5_day
0.7
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.0
vioscreen_visit
1.0
vioscreen_vita_iu
5315.663356
vioscreen_vita_rae
737.5125856000001
vioscreen_vita_re
908.8994863
vioscreen_vitb12
4.560191701
vioscreen_vitb6
1.110876716
vioscreen_vitc
31.27321008
vioscreen_vitd
8.695178055
vioscreen_vitd2
0.00139726
vioscreen_vitd3
8.693808192
vioscreen_vitd_iu
347.8071222
vioscreen_vite_iu
6.711343509
vioscreen_vitk
42.54103971
vioscreen_water
1707.6128420000002
vioscreen_weight
Not provided
vioscreen_wgrain
1.222739693
vioscreen_whole_grain_servings
0.98008
vioscreen_xylitol
0.013863012
vioscreen_zinc
9.629452724
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)