American Gut Project; 10317.000034141
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634392
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:36Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000034141
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000034141
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1976.0
bmi
21.87
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-13
collection month
September
collection season
Fall
collection time
07:20
collection_timestamp
2015-09-13 07:20
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1625.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Not provided
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
152.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
03c0764e64195a79ba16b4e8948d5a3daed2994ad751c431faff742ef1b1b099f55f1855390ee643480a14f9daf415a66c8d7148eefae72c7582be18d4a22171
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
Within the past 6 months
last_travel
1 year
latitude
39.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000034141
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
229e70c8e1ee1a16
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.06528767099999999
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.49879451399999997
vioscreen_addsugar
2.432356158
vioscreen_adsugtot
1.8754247380000002
vioscreen_age
215.0
vioscreen_alanine
4.988876217
vioscreen_alcohol
0.916054754
vioscreen_alcohol_servings
0.06529
vioscreen_alphacar
78.07221747
vioscreen_alphtoce
11.29443761
vioscreen_alphtoco
11.03421982
vioscreen_arginine
5.619123902999999
vioscreen_ash
18.39953312
vioscreen_aspartam
0.0
vioscreen_aspartic
8.29838399
vioscreen_avcarb
25.02857449
vioscreen_bcodeid
Not provided
vioscreen_betacar
24174.32877
vioscreen_betacryp
25.20832887
vioscreen_betaine
199.818857
vioscreen_betatoco
0.051616434
vioscreen_biochana
0.003178082
vioscreen_bmi
Not provided
vioscreen_caffeine
355.54141699999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.01315
vioscreen_calcium_servings
1.93934
vioscreen_calories
1108.319178
vioscreen_carbo
45.80430223
vioscreen_cholest
453.18330480000003
vioscreen_choline
561.3839469
vioscreen_clac9t11
0.14109589
vioscreen_clat10c12
0.047287672
vioscreen_copper
4.61178129
vioscreen_coumest
0.18054794899999999
vioscreen_cystine
1.051506899
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.013150685
vioscreen_d_tot_soym
0.013150685
vioscreen_d_total
0.013150685
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.18024657800000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.652849297
vioscreen_discfat_oil
0.8911233140000001
vioscreen_discfat_sol
38.14202965
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.132273969
vioscreen_f_nj_citmlb
0.123972603
vioscreen_f_nj_other
0.17493150300000002
vioscreen_f_nj_total
0.298876702
vioscreen_f_other
0.17493150300000002
vioscreen_f_total
0.307178069
vioscreen_fat
66.93533819
vioscreen_fiber
20.77542541
vioscreen_fibh2o
5.217890491
vioscreen_fibinso
15.56084921
vioscreen_finished
9/12/15
vioscreen_fish_servings
3.21615
vioscreen_fol_deqv
716.9259846
vioscreen_fol_nat
716.9259846
vioscreen_fol_syn
0.0
vioscreen_formontn
0.003150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.6
vioscreen_fructose
6.100355842999999
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.157506854
vioscreen_g_total
0.157506854
vioscreen_g_whl
0.0
vioscreen_galactos
0.056410959000000004
vioscreen_gammtoco
2.333753445
vioscreen_gender
false
vioscreen_genistn
0.06257534299999999
vioscreen_glac
4.8920821519999995
vioscreen_gltc
5.511589322000001
vioscreen_glucose
5.592164424
vioscreen_glutamic
12.68663046
vioscreen_glycine
4.435342533
vioscreen_glycitn
0.0
vioscreen_grams
2248.810274
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
11.8
vioscreen_hei2010_fatty_acids
2.2
vioscreen_hei2010_fruit
1.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
49.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.4
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.7
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
3.4
vioscreen_hei_oils
0.7
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
37.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.596794567
vioscreen_inositol
0.042684930999999995
vioscreen_iron
16.42816513
vioscreen_isoleuc
3.901917674
vioscreen_isomalt
0.0
vioscreen_joules
4637.211986
vioscreen_juice_servings
0.01658
vioscreen_lactitol
0.0
vioscreen_lactose
0.210301376
vioscreen_legumes
0.0
vioscreen_leucine
6.633698095
vioscreen_line_gi
36.24262896
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
42903.63562
vioscreen_lycopene
5.15263003
vioscreen_lysine
6.933972335
vioscreen_m_egg
0.001178082
vioscreen_m_fish_hi
1.832767183
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
5.004684824
vioscreen_m_mpf
9.393315229
vioscreen_m_nutsd
0.018082192
vioscreen_m_organ
1.7596713130000001
vioscreen_m_poult
0.7961917409999999
vioscreen_m_soy
0.0
vioscreen_magnes
378.4384418
vioscreen_maltitol
0.0
vioscreen_maltose
0.22172602800000002
vioscreen_mangan
4.148904043
vioscreen_mannitol
0.13783561
vioscreen_methhis3
28.74802815
vioscreen_methion
2.083342252
vioscreen_mfa141
0.204547955
vioscreen_mfa161
2.0503836019999997
vioscreen_mfa181
24.35520655
vioscreen_mfa201
0.5936986639999999
vioscreen_mfa221
0.37583563799999997
vioscreen_mfatot
27.70109429
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.03421982
vioscreen_nccglbr
15.19137147
vioscreen_nccglgr
10.62613709
vioscreen_niacin
26.02430169
vioscreen_niacineq
42.67802601
vioscreen_nitrogen
14.13079383
vioscreen_non_fried_fish_servings
3.21615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.359013638
vioscreen_oxalic
1721.917466
vioscreen_oxalicm
1774.777568
vioscreen_pantothe
7.81923293
vioscreen_pectins
4.6114518680000005
vioscreen_pfa182
5.215369153999999
vioscreen_pfa183
1.443972737
vioscreen_pfa184
0.079424657
vioscreen_pfa204
0.306821912
vioscreen_pfa205
0.24128767
vioscreen_pfa225
0.09734247300000001
vioscreen_pfa226
0.49731508
vioscreen_pfatot
8.251124385
vioscreen_phenylal
3.629342359
vioscreen_phosphor
1066.8486300000002
vioscreen_phytic
100.562607
vioscreen_pinitol
0.0
vioscreen_potass
3767.970548
vioscreen_procdate
10/28/15
vioscreen_proline
3.6808493419999997
vioscreen_protanim
71.1698095
vioscreen_protein
87.45301263
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.28320313
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
91.0
vioscreen_retinol
3330.557534
vioscreen_rgrain
0.0
vioscreen_ribofla
3.021287725
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.2971
vioscreen_satoco
0.0
vioscreen_selenium
107.9106699
vioscreen_serine
3.4865478519999997
vioscreen_sfa100
0.10432877199999999
vioscreen_sfa120
0.12564383699999998
vioscreen_sfa140
1.2863562179999999
vioscreen_sfa160
14.60273839
vioscreen_sfa170
0.023890412000000003
vioscreen_sfa180
7.900630082999999
vioscreen_sfa200
0.009013699
vioscreen_sfa220
0.010849315
vioscreen_sfa40
0.010657535
vioscreen_sfa60
0.003178082
vioscreen_sfa80
0.003780822
vioscreen_sfatot
24.21909247
vioscreen_sodium
2908.390753
vioscreen_sorbitol
0.090657535
vioscreen_srvid
20704.0
vioscreen_starch
3.662438463
vioscreen_started
9/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
3.512136799
vioscreen_sweet_servings
0.08327000000000001
vioscreen_tagatose
0.368821904
vioscreen_tfa161t
0.059178083
vioscreen_tfa181t
1.735342533
vioscreen_tfa182t
0.226191795
vioscreen_tgrain
0.0
vioscreen_thiamin
1.084630177
vioscreen_threonin
3.7000545139999996
vioscreen_time
11.0
vioscreen_totaltfa
2.039972676
vioscreen_totcla
0.18654795600000001
vioscreen_totfolat
716.9259846
vioscreen_totsugar
15.74290454
vioscreen_tryptoph
0.999040996
vioscreen_tyrosine
3.041479827
vioscreen_user_id
20704.0
vioscreen_v_drkgr
3.1085205080000002
vioscreen_v_orange
0.0
vioscreen_v_other
2.357671199
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
5.46619154
vioscreen_valine
4.400164544
vioscreen_veg5_day
11.0
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
10.9
vioscreen_visit
1.0
vioscreen_vita_iu
51477.56712
vioscreen_vita_rae
5349.389384
vioscreen_vita_re
7368.219862999999
vioscreen_vitb12
26.37657588
vioscreen_vitb6
2.230383802
vioscreen_vitc
133.3384632
vioscreen_vitd
9.735067958
vioscreen_vitd2
0.0
vioscreen_vitd3
9.735067958
vioscreen_vitd_iu
389.4027183
vioscreen_vite_iu
16.4312607
vioscreen_vitk
1721.742295
vioscreen_water
2038.752911
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.050712329
vioscreen_zinc
12.136713400000001
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
50.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never