American Gut Project; 10317.000022969
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632592
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:13Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022969
acid_reflux
Not provided
acne medication
true
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22969
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
20.82
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-26
collection month
January
collection season
Winter
collection time
06:20
collection_timestamp
2015-01-26 06:20
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1662.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
932ef2688fe864600c20ed27785eee6195f5d866bcbc2c9cc95f9bde735ff6d26806467485ed869a1450e8e400673f03315779a2c6a7363b92add6c8f47ee6fc
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000022969
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
0e8c3bfd818d4017
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.708740234
vioscreen_addsugar
44.96153682
vioscreen_adsugtot
38.19241492
vioscreen_age
215.0
vioscreen_alanine
2.354958396
vioscreen_alcohol
0.013452054
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
1659.763527
vioscreen_alphtoce
10.928879499999999
vioscreen_alphtoco
9.984877328
vioscreen_arginine
3.065232703
vioscreen_ash
18.19301557
vioscreen_aspartam
0.0
vioscreen_aspartic
5.352082553
vioscreen_avcarb
221.1953767
vioscreen_bcodeid
Not provided
vioscreen_betacar
21797.7726
vioscreen_betacryp
183.2913313
vioscreen_betaine
206.7912885
vioscreen_betatoco
0.408739649
vioscreen_biochana
0.0066301369999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
120.55627140000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.25389
vioscreen_calcium_servings
3.15362
vioscreen_calories
1537.1422949999999
vioscreen_carbo
256.9090539
vioscreen_cholest
45.19424765
vioscreen_choline
236.1523759
vioscreen_clac9t11
0.036958906
vioscreen_clat10c12
0.005917808
vioscreen_copper
1.7456437619999998
vioscreen_coumest
0.344958893
vioscreen_cystine
0.769808333
vioscreen_d_cheese
0.820821935
vioscreen_d_milk
0.059232879
vioscreen_d_tot_soym
1.253890448
vioscreen_d_total
1.253890448
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
7.045947266000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.78449289
vioscreen_discfat_oil
13.17128505
vioscreen_discfat_sol
12.73186269
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000876712
vioscreen_f_citmlb
0.9125754159999999
vioscreen_f_nj_citmlb
0.910547962
vioscreen_f_nj_other
1.4464382219999998
vioscreen_f_nj_total
2.356986435
vioscreen_f_other
1.4464382219999998
vioscreen_f_total
2.359013806
vioscreen_fat
38.86618686
vioscreen_fiber
35.66658016
vioscreen_fibh2o
9.359564293
vioscreen_fibinso
26.4026006
vioscreen_finished
1/9/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
406.27230310000004
vioscreen_fol_nat
352.93550939999994
vioscreen_fol_syn
31.37183487
vioscreen_formontn
0.0033424659999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.7
vioscreen_fructose
24.18815818
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.83783561
vioscreen_g_total
5.283342252
vioscreen_g_whl
3.4455071439999996
vioscreen_galactos
0.7167396859999999
vioscreen_gammtoco
7.098575958
vioscreen_gender
false
vioscreen_genistn
10.464576199999998
vioscreen_glac
109.19073200000001
vioscreen_gltc
124.1589362
vioscreen_glucose
23.19364566
vioscreen_glutamic
11.41030207
vioscreen_glycine
2.10315025
vioscreen_glycitn
1.401589004
vioscreen_grams
2817.139384
vioscreen_hei2010_dairy
6.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
6.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.1
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
82.2
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.3038903640000001
vioscreen_inositol
0.177123292
vioscreen_iron
12.85131502
vioscreen_isoleuc
2.317397193
vioscreen_isomalt
0.0
vioscreen_joules
6431.399315
vioscreen_juice_servings
0.00405
vioscreen_lactitol
0.0
vioscreen_lactose
7.167780795
vioscreen_legumes
0.0027123290000000003
vioscreen_leucine
4.0883842569999995
vioscreen_line_gi
580.9400257
vioscreen_low_fat_dairy_serving
1.0630700000000002
vioscreen_lutzeax
13036.87534
vioscreen_lycopene
8917.295890000001
vioscreen_lysine
2.893150685
vioscreen_m_egg
0.115287666
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.028712328
vioscreen_m_meat
0.132465749
vioscreen_m_mpf
0.161178077
vioscreen_m_nutsd
1.166794534
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
1.0357261340000001
vioscreen_magnes
422.8096318
vioscreen_maltitol
0.0
vioscreen_maltose
6.137177601
vioscreen_mangan
7.451068199
vioscreen_mannitol
0.723835566
vioscreen_methhis3
0.7149041159999999
vioscreen_methion
0.9792876779999999
vioscreen_mfa141
0.011205478999999999
vioscreen_mfa161
0.343589009
vioscreen_mfa181
12.18430009
vioscreen_mfa201
0.134794512
vioscreen_mfa221
0.012328767
vioscreen_mfatot
12.86591797
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
9.940932684
vioscreen_nccglbr
175.90183009999998
vioscreen_nccglgr
123.04648970000001
vioscreen_niacin
13.201016699999998
vioscreen_niacineq
24.80873823
vioscreen_nitrogen
9.322383347999999
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.908109649
vioscreen_oxalic
607.9713613
vioscreen_oxalicm
611.7302225999999
vioscreen_pantothe
4.707863669
vioscreen_pectins
6.392548025
vioscreen_pfa182
9.284001097
vioscreen_pfa183
0.904520531
vioscreen_pfa184
0.000246575
vioscreen_pfa204
0.010027397
vioscreen_pfa205
0.0007945210000000001
vioscreen_pfa225
0.000739726
vioscreen_pfa226
0.001753425
vioscreen_pfatot
10.22027571
vioscreen_phenylal
2.579725961
vioscreen_phosphor
1166.638613
vioscreen_phytic
1063.4202050000001
vioscreen_pinitol
0.037095893
vioscreen_potass
3393.432192
vioscreen_procdate
10/28/15
vioscreen_proline
3.8021367319999997
vioscreen_protanim
16.61509525
vioscreen_protein
56.65731485
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
40.03564319
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
642.0
vioscreen_retinol
96.20342466
vioscreen_rgrain
1.738876886
vioscreen_ribofla
1.38673982
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7955599999999998
vioscreen_satoco
0.097643834
vioscreen_selenium
83.40380993
vioscreen_serine
2.661178296
vioscreen_sfa100
0.191287691
vioscreen_sfa120
0.320438375
vioscreen_sfa140
0.941315199
vioscreen_sfa160
6.30438316
vioscreen_sfa170
0.032547946
vioscreen_sfa180
2.707972696
vioscreen_sfa200
0.112356149
vioscreen_sfa220
0.187561662
vioscreen_sfa40
0.269397244
vioscreen_sfa60
0.089643839
vioscreen_sfa80
0.104164395
vioscreen_sfatot
11.55676905
vioscreen_sodium
2678.831678
vioscreen_sorbitol
0.908438403
vioscreen_srvid
16818.0
vioscreen_starch
89.14674658
vioscreen_started
1/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.2205747
vioscreen_sweet_servings
0.9741
vioscreen_tagatose
4.175753492
vioscreen_tfa161t
0.004684932
vioscreen_tfa181t
0.44241094700000005
vioscreen_tfa182t
0.21139724899999998
vioscreen_tgrain
5.495450957999999
vioscreen_thiamin
1.499753184
vioscreen_threonin
2.044602653
vioscreen_time
15.0
vioscreen_totaltfa
0.707999953
vioscreen_totcla
0.043095894
vioscreen_totfolat
384.3072774
vioscreen_totsugar
106.25623929999999
vioscreen_tryptoph
0.696794567
vioscreen_tyrosine
1.906356352
vioscreen_user_id
16818.0
vioscreen_v_drkgr
0.7429588840000001
vioscreen_v_orange
0.9712603009999999
vioscreen_v_other
0.7469589440000001
vioscreen_v_potato
0.133342461
vioscreen_v_starcy
0.564575321
vioscreen_v_tomato
0.651589046
vioscreen_v_total
3.810931146
vioscreen_valine
2.854055075
vioscreen_veg5_day
6.0
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.6
vioscreen_visit
1.0
vioscreen_vita_iu
38186.02466
vioscreen_vita_rae
1989.479452
vioscreen_vita_re
3882.753425
vioscreen_vitb12
1.500164377
vioscreen_vitb6
1.69430149
vioscreen_vitc
170.382363
vioscreen_vitd
1.0031778409999998
vioscreen_vitd2
0.000410959
vioscreen_vitd3
1.00279424
vioscreen_vitd_iu
40.12711366
vioscreen_vite_iu
14.92490636
vioscreen_vitk
528.3272688
vioscreen_water
2455.233219
vioscreen_weight
Not provided
vioscreen_wgrain
3.756575075
vioscreen_whole_grain_servings
3.44551
vioscreen_xylitol
0.048821917
vioscreen_zinc
8.792520601
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily