American Gut Project; 10317.000022597
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632528
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022597
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22597
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
19.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/09/2015
collection month
January
collection season
Winter
collection time
06:00
collection_timestamp
2015-01-09 06:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1619.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
a20c57204d184ce69e1fc04bec55481b10ae7eb4d521a724f51b7361af0d48694255c1dddc69af3469f1a3df8f7a9d8bdc0199d3f9b442bdc0067b66ea877bd8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
40.0
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-105.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022597
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
de5b5511ce374560
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.906246488
vioscreen_a_cal
97.70114512
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.75013712
vioscreen_addsugar
17.87375321
vioscreen_adsugtot
16.86830051
vioscreen_age
215.0
vioscreen_alanine
8.287562206
vioscreen_alcohol
13.23306801
vioscreen_alcohol_servings
0.90625
vioscreen_alphacar
1355.449401
vioscreen_alphtoce
29.85213238
vioscreen_alphtoco
27.64479613
vioscreen_arginine
10.21769785
vioscreen_ash
24.79772046
vioscreen_aspartam
0.0
vioscreen_aspartic
14.52273919
vioscreen_avcarb
177.80898969999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
12534.21644
vioscreen_betacryp
190.8574272
vioscreen_betaine
132.9619649
vioscreen_betatoco
0.668739758
vioscreen_biochana
0.010849315
vioscreen_bmi
Not provided
vioscreen_caffeine
178.75247219999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.12236
vioscreen_calcium_servings
1.96616
vioscreen_calories
3169.882877
vioscreen_carbo
213.3634204
vioscreen_cholest
501.3244435
vioscreen_choline
670.4125428
vioscreen_clac9t11
0.06964383099999999
vioscreen_clat10c12
0.02279452
vioscreen_copper
2.2053152419999997
vioscreen_coumest
0.001753425
vioscreen_cystine
2.175342299
vioscreen_d_cheese
0.000438356
vioscreen_d_milk
0.121917808
vioscreen_d_tot_soym
0.122356164
vioscreen_d_total
0.122356164
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.043863014000000006
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.274357542
vioscreen_discfat_oil
118.83165670000001
vioscreen_discfat_sol
19.39610847
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.065753425
vioscreen_f_nj_citmlb
0.055671232
vioscreen_f_nj_other
0.381369855
vioscreen_f_nj_total
0.43704110799999996
vioscreen_f_other
0.381369855
vioscreen_f_total
0.44715066200000003
vioscreen_fat
185.10040669999998
vioscreen_fiber
35.54441085
vioscreen_fibh2o
9.35462797
vioscreen_fibinso
26.26177761
vioscreen_finished
1/7/15
vioscreen_fish_servings
4.97077
vioscreen_fol_deqv
448.22414380000004
vioscreen_fol_nat
410.406036
vioscreen_fol_syn
22.24027317
vioscreen_formontn
0.004410959
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.9
vioscreen_fructose
5.304493191000001
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.46290417
vioscreen_g_total
8.677672169
vioscreen_g_whl
7.214822346
vioscreen_galactos
0.080876719
vioscreen_gammtoco
18.94717466
vioscreen_gender
false
vioscreen_genistn
0.052328772999999995
vioscreen_glac
83.96983091
vioscreen_gltc
96.24682149
vioscreen_glucose
6.265506609
vioscreen_glutamic
25.12644478
vioscreen_glycine
7.827835376
vioscreen_glycitn
0.0075890409999999995
vioscreen_grams
4336.944178
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.9
vioscreen_hei2010_veg
4.2
vioscreen_hei2010_whole_fruit
1.7
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
4.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
1.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.8
vioscreen_hei_score
72.6
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
4.2
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
4.277862799999999
vioscreen_inositol
0.04013699
vioscreen_iron
18.6118057
vioscreen_isoleuc
6.77523277
vioscreen_isomalt
0.0
vioscreen_joules
13262.77397
vioscreen_juice_servings
0.02019
vioscreen_lactitol
0.0
vioscreen_lactose
1.664712315
vioscreen_legumes
0.040876712999999995
vioscreen_leucine
11.51476884
vioscreen_line_gi
350.2331122
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15563.66301
vioscreen_lycopene
1362.2576199999999
vioscreen_lysine
11.06789116
vioscreen_m_egg
1.073890414
vioscreen_m_fish_hi
1.12460277
vioscreen_m_fish_lo
1.708082225
vioscreen_m_frank
0.331424661
vioscreen_m_meat
4.851890585
vioscreen_m_mpf
12.28432818
vioscreen_m_nutsd
3.4467673110000003
vioscreen_m_organ
0.0
vioscreen_m_poult
4.268328941
vioscreen_m_soy
0.00139726
vioscreen_magnes
632.0013271
vioscreen_maltitol
0.0
vioscreen_maltose
0.954438343
vioscreen_mangan
10.284959599999999
vioscreen_mannitol
0.133287675
vioscreen_methhis3
50.49912243
vioscreen_methion
3.6567118610000002
vioscreen_mfa141
0.081232876
vioscreen_mfa161
2.7323835819999998
vioscreen_mfa181
94.25110231
vioscreen_mfa201
0.8967123790000001
vioscreen_mfa221
0.143095879
vioscreen_mfatot
98.39255137
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
27.64479613
vioscreen_nccglbr
136.49513059999998
vioscreen_nccglgr
95.46550728
vioscreen_niacin
37.20364673
vioscreen_niacineq
64.41881421
vioscreen_nitrogen
24.71391802
vioscreen_non_fried_fish_servings
4.97077
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.665259792
vioscreen_oxalic
644.8337757
vioscreen_oxalicm
688.841524
vioscreen_pantothe
7.6510949539999995
vioscreen_pectins
4.573314761000001
vioscreen_pfa182
35.27465486
vioscreen_pfa183
3.033451279
vioscreen_pfa184
0.033342466
vioscreen_pfa204
0.339917828
vioscreen_pfa205
0.15575342
vioscreen_pfa225
0.09095890599999999
vioscreen_pfa226
0.354356154
vioscreen_pfatot
39.46112479
vioscreen_phenylal
6.449999331
vioscreen_phosphor
2024.177055
vioscreen_phytic
1568.739726
vioscreen_pinitol
0.00030137
vioscreen_potass
3808.636986
vioscreen_procdate
10/28/15
vioscreen_proline
6.755534299999999
vioscreen_protanim
107.68229879999998
vioscreen_protein
151.2632384
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
43.5825717
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
651.0
vioscreen_retinol
176.9702269
vioscreen_rgrain
1.219178082
vioscreen_ribofla
1.9019728569999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.59148
vioscreen_satoco
0.0
vioscreen_selenium
233.6451413
vioscreen_serine
6.74906959
vioscreen_sfa100
0.095342464
vioscreen_sfa120
0.48676711799999994
vioscreen_sfa140
0.913369876
vioscreen_sfa160
24.60375642
vioscreen_sfa170
0.075452052
vioscreen_sfa180
7.474656865
vioscreen_sfa200
0.656219064
vioscreen_sfa220
0.7090411459999999
vioscreen_sfa40
0.045808222999999995
vioscreen_sfa60
0.020246576000000002
vioscreen_sfa80
0.06106849599999999
vioscreen_sfatot
35.62008508
vioscreen_sodium
5240.129452
vioscreen_sorbitol
0.047123285
vioscreen_srvid
16791.0
vioscreen_starch
130.9204088
vioscreen_started
1/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.77627087
vioscreen_sweet_servings
0.41536000000000006
vioscreen_tagatose
0.8581096490000001
vioscreen_tfa161t
0.059780821
vioscreen_tfa181t
1.221999997
vioscreen_tfa182t
0.34865754
vioscreen_tgrain
8.686822426
vioscreen_thiamin
1.82545166
vioscreen_threonin
5.972602071
vioscreen_time
24.0
vioscreen_totaltfa
1.657260341
vioscreen_totcla
0.09452054800000001
vioscreen_totfolat
432.64619010000007
vioscreen_totsugar
35.72178136
vioscreen_tryptoph
1.631616713
vioscreen_tyrosine
5.082274722
vioscreen_user_id
16791.0
vioscreen_v_drkgr
1.0227122690000001
vioscreen_v_orange
0.338520541
vioscreen_v_other
1.3970958969999998
vioscreen_v_potato
0.008219178
vioscreen_v_starcy
0.004109589
vioscreen_v_tomato
0.112082191
vioscreen_v_total
2.88279444
vioscreen_valine
7.518001525
vioscreen_veg5_day
7.0
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
22767.88767
vioscreen_vita_rae
1285.91875
vioscreen_vita_re
2394.8647260000002
vioscreen_vitb12
6.056603168
vioscreen_vitb6
2.9979177810000004
vioscreen_vitc
127.98369009999999
vioscreen_vitd
8.480656705
vioscreen_vitd2
0.0
vioscreen_vitd3
8.480656705
vioscreen_vitd_iu
339.2262682
vioscreen_vite_iu
41.25336045
vioscreen_vitk
705.9557791
vioscreen_water
3778.510274
vioscreen_weight
Not provided
vioscreen_wgrain
7.467643675
vioscreen_whole_grain_servings
7.21482
vioscreen_xylitol
0.019506851999999998
vioscreen_zinc
19.75791551
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily