American Gut Project; 10317.000026662
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633466
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026662
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26662
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
32.62
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/08/2015
collection month
June
collection season
Summer
collection time
20:40
collection_timestamp
2015-06-08 20:40
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
299.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
193.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
60f4f4724c8f5799ee33de24d2cc6c09e0393261882bb8be56107ee6fbb4c7da1e0fd29244a40642760379d402bce5f437a239ccec906c80c9a55dc33478904c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-118.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Daily
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000026662
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
b8b84d901dafcaa6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.114328766
vioscreen_a_cal
14.16657481
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.5276715
vioscreen_addsugar
53.91900685
vioscreen_adsugtot
50.43805651
vioscreen_age
215.0
vioscreen_alanine
2.546027531
vioscreen_alcohol
1.780328787
vioscreen_alcohol_servings
0.11433
vioscreen_alphacar
967.7106163999999
vioscreen_alphtoce
10.34268515
vioscreen_alphtoco
9.289261157
vioscreen_arginine
2.563506996
vioscreen_ash
24.52487693
vioscreen_aspartam
0.0
vioscreen_aspartic
4.951479559
vioscreen_avcarb
143.3435574
vioscreen_bcodeid
Not provided
vioscreen_betacar
8100.991781000001
vioscreen_betacryp
114.2113763
vioscreen_betaine
77.46442637
vioscreen_betatoco
0.33761644799999996
vioscreen_biochana
0.002465754
vioscreen_bmi
Not provided
vioscreen_caffeine
593.8763271
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
1.98101
vioscreen_calcium_servings
4.04321
vioscreen_calories
1367.589897
vioscreen_carbo
166.72869219999998
vioscreen_cholest
161.2015946
vioscreen_choline
274.8666952
vioscreen_clac9t11
0.05613698599999999
vioscreen_clat10c12
0.008684931
vioscreen_copper
0.9358630040000001
vioscreen_coumest
0.443780852
vioscreen_cystine
0.7313698959999999
vioscreen_d_cheese
0.699972618
vioscreen_d_milk
0.105369861
vioscreen_d_tot_soym
1.9810137190000001
vioscreen_d_total
1.9810137190000001
vioscreen_d_yogurt
1.174876676
vioscreen_daidzein
0.510493156
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.965945226
vioscreen_discfat_oil
24.17665614
vioscreen_discfat_sol
23.96054955
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.12123287699999999
vioscreen_f_nj_citmlb
0.115123289
vioscreen_f_nj_other
0.220630155
vioscreen_f_nj_total
0.335780836
vioscreen_f_other
0.220630155
vioscreen_f_total
0.341917817
vioscreen_fat
59.71542701
vioscreen_fiber
23.38498769
vioscreen_fibh2o
10.84698603
vioscreen_fibinso
12.57682203
vioscreen_finished
4/9/15
vioscreen_fish_servings
1.60808
vioscreen_fol_deqv
641.0806934999999
vioscreen_fol_nat
281.0334974
vioscreen_fol_syn
211.79691780000002
vioscreen_formontn
0.000575342
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.7
vioscreen_fructose
14.53988923
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.550164377
vioscreen_g_total
2.8735344869999997
vioscreen_g_whl
2.323342519
vioscreen_galactos
1.6034520819999998
vioscreen_gammtoco
9.125587944
vioscreen_gender
false
vioscreen_genistn
0.216301382
vioscreen_glac
55.16892658
vioscreen_gltc
60.59501284
vioscreen_glucose
13.69178216
vioscreen_glutamic
10.68674082
vioscreen_glycine
1.910054915
vioscreen_glycitn
0.01739726
vioscreen_grams
5048.283219
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.2
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
1.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.2
vioscreen_hei2010_sea_foods_plant_protiens
4.5
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.1
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.6
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.1
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.4
vioscreen_hei_score
65.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.4189864490000001
vioscreen_inositol
0.05038356
vioscreen_iron
14.25096051
vioscreen_isoleuc
2.643068246
vioscreen_isomalt
0.0
vioscreen_joules
5721.994178
vioscreen_juice_servings
0.01225
vioscreen_lactitol
0.0
vioscreen_lactose
19.53071222
vioscreen_legumes
0.0
vioscreen_leucine
4.644904484
vioscreen_line_gi
273.4011772
vioscreen_low_fat_dairy_serving
1.19389
vioscreen_lutzeax
9257.25137
vioscreen_lycopene
5014.411986
vioscreen_lysine
3.944547972
vioscreen_m_egg
0.988821955
vioscreen_m_fish_hi
0.9163835920000001
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.138520552
vioscreen_m_meat
0.08693150599999999
vioscreen_m_mpf
1.14183567
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.003616438
vioscreen_magnes
317.8388271
vioscreen_maltitol
0.0
vioscreen_maltose
1.5533699769999998
vioscreen_mangan
3.5026862160000003
vioscreen_mannitol
0.24169865399999999
vioscreen_methhis3
4.212054861
vioscreen_methion
1.327945155
vioscreen_mfa141
0.065671236
vioscreen_mfa161
0.957753304
vioscreen_mfa181
19.92210911
vioscreen_mfa201
0.283561623
vioscreen_mfa221
0.18720548399999998
vioscreen_mfatot
21.69260354
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
9.289261157
vioscreen_nccglbr
111.08403249999999
vioscreen_nccglgr
77.71447988
vioscreen_niacin
15.25934557
vioscreen_niacineq
24.46090539
vioscreen_nitrogen
8.862876579
vioscreen_non_fried_fish_servings
1.60808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.685424637
vioscreen_oxalic
275.1814426
vioscreen_oxalicm
301.4178938
vioscreen_pantothe
7.706547651
vioscreen_pectins
3.0378357769999997
vioscreen_pfa182
11.53934343
vioscreen_pfa183
1.213369793
vioscreen_pfa184
0.040931506
vioscreen_pfa204
0.073780823
vioscreen_pfa205
0.128767123
vioscreen_pfa225
0.05013698900000001
vioscreen_pfa226
0.252356166
vioscreen_pfatot
13.39361622
vioscreen_phenylal
2.6838081259999997
vioscreen_phosphor
1180.814983
vioscreen_phytic
552.6695205
vioscreen_pinitol
0.005424658000000001
vioscreen_potass
3108.2212329999998
vioscreen_procdate
10/28/15
vioscreen_proline
4.075918036
vioscreen_protanim
37.63090218
vioscreen_protein
55.44509846
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.80084546
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
490.0
vioscreen_retinol
377.3131849
vioscreen_rgrain
0.6790410709999999
vioscreen_ribofla
2.968821904
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.22677
vioscreen_satoco
0.0
vioscreen_selenium
71.15567744
vioscreen_serine
2.9156166389999996
vioscreen_sfa100
0.455698635
vioscreen_sfa120
0.475643837
vioscreen_sfa140
2.03002729
vioscreen_sfa160
10.67917782
vioscreen_sfa170
0.07063013900000001
vioscreen_sfa180
4.296465646000001
vioscreen_sfa200
0.079205474
vioscreen_sfa220
0.024739728
vioscreen_sfa40
0.5478904410000001
vioscreen_sfa60
0.288273976
vioscreen_sfa80
0.19830136199999998
vioscreen_sfatot
19.56994328
vioscreen_sodium
3643.1455479999995
vioscreen_sorbitol
0.11534247199999999
vioscreen_srvid
18479.0
vioscreen_starch
41.68983572
vioscreen_started
4/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.56110071
vioscreen_sweet_servings
0.43711000000000005
vioscreen_tagatose
10.01049337
vioscreen_tfa161t
0.06939726
vioscreen_tfa181t
0.704493191
vioscreen_tfa182t
0.273150697
vioscreen_tgrain
3.4043289810000004
vioscreen_thiamin
1.2319177909999999
vioscreen_threonin
2.140986194
vioscreen_time
12.0
vioscreen_totaltfa
1.092520518
vioscreen_totcla
0.064958907
vioscreen_totfolat
492.8303938
vioscreen_totsugar
92.15649615
vioscreen_tryptoph
0.553835683
vioscreen_tyrosine
2.179780976
vioscreen_user_id
18479.0
vioscreen_v_drkgr
0.918493151
vioscreen_v_orange
0.137917809
vioscreen_v_other
1.195506893
vioscreen_v_potato
0.11400000199999999
vioscreen_v_starcy
0.065835618
vioscreen_v_tomato
0.619808207
vioscreen_v_total
3.051561497
vioscreen_valine
3.389726027
vioscreen_veg5_day
5.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.1
vioscreen_visit
1.0
vioscreen_vita_iu
15659.31644
vioscreen_vita_rae
1097.4761130000002
vioscreen_vita_re
1817.639384
vioscreen_vitb12
4.98364425
vioscreen_vitb6
1.5072603409999998
vioscreen_vitc
98.33777825
vioscreen_vitd
6.962794307
vioscreen_vitd2
0.0
vioscreen_vitd3
6.962794307
vioscreen_vitd_iu
278.5117723
vioscreen_vite_iu
13.78852071
vioscreen_vitk
428.7223459
vioscreen_water
4751.627397
vioscreen_weight
Not provided
vioscreen_wgrain
2.7252876180000003
vioscreen_whole_grain_servings
2.32334
vioscreen_xylitol
0.022657536000000002
vioscreen_zinc
10.86120505
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
121.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)