American Gut Project; 10317.000029368
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3634020
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T22:47:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029368
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29368
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1962.0
bmi
25.99
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-14
collection month
July
collection season
Summer
collection time
08:00
collection_timestamp
2015-07-14 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
124.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
171.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
010261615d544997eea929a3f0aa506f9007026c4659854f5ab395d75f3054dffa2b74bff1478fd2bb6201869a40b1f1d3d8f61dbeaded1cdf3a924cf10f1778
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
53.4
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029368
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
63aa21b668e636d6
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.17038355800000002
vioscreen_a_cal
20.73367134
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.0858632539999995
vioscreen_addsugar
35.52249304
vioscreen_adsugtot
28.95331229
vioscreen_age
215.0
vioscreen_alanine
4.068986113999999
vioscreen_alcohol
2.609424664
vioscreen_alcohol_servings
0.17038
vioscreen_alphacar
1883.3273969999998
vioscreen_alphtoce
13.78876819
vioscreen_alphtoco
12.07175326
vioscreen_arginine
5.118685118999999
vioscreen_ash
19.02539598
vioscreen_aspartam
0.0
vioscreen_aspartic
7.779617267999999
vioscreen_avcarb
159.7797089
vioscreen_bcodeid
Not provided
vioscreen_betacar
7736.740411
vioscreen_betacryp
120.390625
vioscreen_betaine
57.42794307
vioscreen_betatoco
0.42961639
vioscreen_biochana
0.007260274000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
1.275616371
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.07912000000000001
vioscreen_calcium_servings
2.01151
vioscreen_calories
1748.479452
vioscreen_carbo
185.4544307
vioscreen_cholest
150.54220890000002
vioscreen_choline
290.0836901
vioscreen_clac9t11
0.071534248
vioscreen_clat10c12
0.020054795
vioscreen_copper
1.525918036
vioscreen_coumest
0.017561645
vioscreen_cystine
0.9753698059999999
vioscreen_d_cheese
0.01309589
vioscreen_d_milk
0.065835613
vioscreen_d_tot_soym
0.079123285
vioscreen_d_total
0.079123285
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.06934247
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.754739673
vioscreen_discfat_oil
37.25019264
vioscreen_discfat_sol
19.49441085
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0010136989999999999
vioscreen_f_citmlb
0.445945217
vioscreen_f_nj_citmlb
0.432356158
vioscreen_f_nj_other
1.066164367
vioscreen_f_nj_total
1.4985206080000002
vioscreen_f_other
1.066164367
vioscreen_f_total
1.512109709
vioscreen_fat
82.12640732
vioscreen_fiber
25.66432738
vioscreen_fibh2o
6.294135943
vioscreen_fibinso
19.35723191
vioscreen_finished
7/13/15
vioscreen_fish_servings
3.9580800000000003
vioscreen_fol_deqv
814.4339897000001
vioscreen_fol_nat
244.40905389999998
vioscreen_fol_syn
335.269863
vioscreen_formontn
0.002054795
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.29589
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
15.0942744
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.502246595
vioscreen_g_total
3.497670965
vioscreen_g_whl
1.9954245369999999
vioscreen_galactos
0.131479446
vioscreen_gammtoco
15.18457433
vioscreen_gender
false
vioscreen_genistn
0.152082198
vioscreen_glac
82.30246147
vioscreen_gltc
92.30687072
vioscreen_glucose
17.10909541
vioscreen_glutamic
13.21506716
vioscreen_glycine
3.943698496
vioscreen_glycitn
0.019287672
vioscreen_grams
2620.964897
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.3
vioscreen_hei_score
75.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
2.1615343069999997
vioscreen_inositol
0.10898629800000001
vioscreen_iron
22.16120371
vioscreen_isoleuc
3.262328433
vioscreen_isomalt
0.0
vioscreen_joules
7315.634247
vioscreen_juice_servings
0.02715
vioscreen_lactitol
0.0
vioscreen_lactose
1.2104383490000001
vioscreen_legumes
0.17873972
vioscreen_leucine
5.655918236000001
vioscreen_line_gi
432.56815070000005
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3859.194178
vioscreen_lycopene
3480.131164
vioscreen_lysine
5.301808647
vioscreen_m_egg
0.077123292
vioscreen_m_fish_hi
1.419452155
vioscreen_m_fish_lo
0.836438323
vioscreen_m_frank
2.540547912
vioscreen_m_meat
1.587424584
vioscreen_m_mpf
6.90904123
vioscreen_m_nutsd
2.212493144
vioscreen_m_organ
0.0
vioscreen_m_poult
0.52539723
vioscreen_m_soy
0.0007123289999999999
vioscreen_magnes
342.75136989999993
vioscreen_maltitol
0.0
vioscreen_maltose
5.646026862
vioscreen_mangan
3.929999866
vioscreen_mannitol
0.27789037
vioscreen_methhis3
19.94150658
vioscreen_methion
1.69460282
vioscreen_mfa141
0.062383568
vioscreen_mfa161
1.257369786
vioscreen_mfa181
32.04290186
vioscreen_mfa201
0.571369913
vioscreen_mfa221
0.250712335
vioscreen_mfatot
34.36098298
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
12.07175326
vioscreen_nccglbr
144.1739619
vioscreen_nccglgr
100.8577697
vioscreen_niacin
32.50386344
vioscreen_niacineq
46.14805758
vioscreen_nitrogen
12.50660049
vioscreen_non_fried_fish_servings
3.5305800000000005
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.8261096689999996
vioscreen_oxalic
184.2020762
vioscreen_oxalicm
213.5197774
vioscreen_pantothe
4.6050139130000005
vioscreen_pectins
4.656877408
vioscreen_pfa182
19.78038581
vioscreen_pfa183
2.101287424
vioscreen_pfa184
0.056931509000000005
vioscreen_pfa204
0.099095896
vioscreen_pfa205
0.191726037
vioscreen_pfa225
0.078958903
vioscreen_pfa226
0.398794514
vioscreen_pfatot
22.79695794
vioscreen_phenylal
3.2631775739999997
vioscreen_phosphor
1125.2678939999998
vioscreen_phytic
651.7660959
vioscreen_pinitol
0.000739726
vioscreen_potass
3090.732877
vioscreen_procdate
10/28/15
vioscreen_proline
3.638684584
vioscreen_protanim
47.89865154
vioscreen_protein
76.68533819
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.78852205
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
299.0
vioscreen_retinol
393.4077055
vioscreen_rgrain
2.000356345
vioscreen_ribofla
1.6221370330000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.90038
vioscreen_satoco
0.0
vioscreen_selenium
111.27810359999998
vioscreen_serine
3.343972737
vioscreen_sfa100
0.114876713
vioscreen_sfa120
0.47008219700000003
vioscreen_sfa140
0.850959004
vioscreen_sfa160
11.23106807
vioscreen_sfa170
0.076876721
vioscreen_sfa180
4.736164584
vioscreen_sfa200
0.275917806
vioscreen_sfa220
0.41339725899999996
vioscreen_sfa40
0.033890411
vioscreen_sfa60
0.012739725
vioscreen_sfa80
0.058684932
vioscreen_sfatot
18.54350653
vioscreen_sodium
3582.903082
vioscreen_sorbitol
0.085260271
vioscreen_srvid
20132.0
vioscreen_starch
73.09022367
vioscreen_started
7/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.77285156
vioscreen_sweet_servings
0.45098
vioscreen_tagatose
0.794684925
vioscreen_tfa161t
0.047178085999999994
vioscreen_tfa181t
1.4276439090000002
vioscreen_tfa182t
0.32030138
vioscreen_tgrain
3.552876846
vioscreen_thiamin
1.6317255730000002
vioscreen_threonin
2.965343068
vioscreen_time
33.0
vioscreen_totaltfa
1.8318083459999999
vioscreen_totcla
0.09254795199999999
vioscreen_totfolat
579.6788955
vioscreen_totsugar
65.29890304
vioscreen_tryptoph
0.81890426
vioscreen_tyrosine
2.404218951
vioscreen_user_id
20132.0
vioscreen_v_drkgr
0.277890412
vioscreen_v_orange
0.41021920799999995
vioscreen_v_other
1.1784109459999998
vioscreen_v_potato
0.548712325
vioscreen_v_starcy
0.151890418
vioscreen_v_tomato
0.334410952
vioscreen_v_total
2.9015618310000004
vioscreen_valine
3.66997271
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
15875.409590000001
vioscreen_vita_rae
1121.624914
vioscreen_vita_re
1849.841438
vioscreen_vitb12
7.26909581
vioscreen_vitb6
3.0549864889999996
vioscreen_vitc
140.95056719999997
vioscreen_vitd
9.790629682
vioscreen_vitd2
1.252739726
vioscreen_vitd3
8.53791738
vioscreen_vitd_iu
391.6251873
vioscreen_vite_iu
18.01443841
vioscreen_vitk
211.6855736
vioscreen_water
2280.334247
vioscreen_weight
Not provided
vioscreen_wgrain
1.5524930769999998
vioscreen_whole_grain_servings
1.99542
vioscreen_xylitol
0.043397266
vioscreen_zinc
15.62893301
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily