American Gut Project; 10317.000026486
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633880
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026486
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
Not provided
age years
Not provided
age_corrected
Not provided
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26486
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
Not provided
bmi
1.33
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-18
collection month
August
collection season
Summer
collection time
13:00
collection_timestamp
2015-08-18 13:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
29.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
5d368ab46f7e242fa0298779ea0fcd1a90aaa0c424be2164a68dcb7de0f22bfaa40622add92f4c62a26e3a3940a9e35a717b09e4299edc5d4f5f963cccb0d661
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
28.6
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-81.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026486
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d3a9d2ef38e0f13c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.652301402
vioscreen_a_cal
84.88523652
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.086109402
vioscreen_addsugar
10.72342479
vioscreen_adsugtot
10.15983586
vioscreen_age
215.0
vioscreen_alanine
3.5505210560000005
vioscreen_alcohol
9.972246896
vioscreen_alcohol_servings
0.6523
vioscreen_alphacar
2449.712329
vioscreen_alphtoce
14.971017499999999
vioscreen_alphtoco
14.11898545
vioscreen_arginine
3.84972576
vioscreen_ash
20.93482716
vioscreen_aspartam
0.0
vioscreen_aspartic
7.09123301
vioscreen_avcarb
89.85074914
vioscreen_bcodeid
Not provided
vioscreen_betacar
13124.360270000001
vioscreen_betacryp
38.39293129
vioscreen_betaine
91.03204195
vioscreen_betatoco
0.126958905
vioscreen_biochana
0.008383561
vioscreen_bmi
Not provided
vioscreen_caffeine
115.1259739
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.9312599999999998
vioscreen_calcium_servings
3.22143
vioscreen_calories
1865.7558219999999
vioscreen_carbo
108.5994007
vioscreen_cholest
1018.0801369999999
vioscreen_choline
859.4792808
vioscreen_clac9t11
0.320246574
vioscreen_clat10c12
0.058191791
vioscreen_copper
2.026411166
vioscreen_coumest
0.071917808
vioscreen_cystine
1.07463011
vioscreen_d_cheese
0.134630135
vioscreen_d_milk
1.689835556
vioscreen_d_tot_soym
1.9312601999999999
vioscreen_d_total
1.9312601999999999
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
0.140219179
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.6364108990000001
vioscreen_discfat_oil
28.55635702
vioscreen_discfat_sol
78.73293022
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
0.446630149
vioscreen_f_nj_citmlb
0.444356129
vioscreen_f_nj_other
0.173287671
vioscreen_f_nj_total
0.617643801
vioscreen_f_other
0.173287671
vioscreen_f_total
0.6198903960000001
vioscreen_fat
123.54563359999999
vioscreen_fiber
18.74958797
vioscreen_fibh2o
4.467890491
vioscreen_fibinso
14.30926129
vioscreen_finished
8/18/15
vioscreen_fish_servings
0.37115
vioscreen_fol_deqv
435.31010269999996
vioscreen_fol_nat
404.8271832
vioscreen_fol_syn
17.91391802
vioscreen_formontn
0.0010136989999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.2
vioscreen_fructose
12.17766883
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.7662191309999999
vioscreen_g_total
0.9906575240000001
vioscreen_g_whl
0.224438351
vioscreen_galactos
0.256602729
vioscreen_gammtoco
7.836053885
vioscreen_gender
false
vioscreen_genistn
0.057315074
vioscreen_glac
31.14273598
vioscreen_gltc
36.55254709
vioscreen_glucose
14.07293049
vioscreen_glutamic
13.003890199999999
vioscreen_glycine
2.67994552
vioscreen_glycitn
0.003780822
vioscreen_grams
3030.837329
vioscreen_hei2010_dairy
8.0
vioscreen_hei2010_empty_calories
6.5
vioscreen_hei2010_fatty_acids
0.1
vioscreen_hei2010_fruit
2.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
48.3
vioscreen_hei2010_sea_foods_plant_protiens
0.7
vioscreen_hei2010_sodium
1.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.1
vioscreen_hei2010_whole_grains
0.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.1
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.0
vioscreen_hei_non_juice_frt
4.1
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
50.0
vioscreen_hei_sodium
0.8
vioscreen_hei_sol_fat_alc_add_sug
3.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.4
vioscreen_height
Not provided
vioscreen_histidin
1.8457260340000001
vioscreen_inositol
0.164767143
vioscreen_iron
11.29399882
vioscreen_isoleuc
3.4748488330000002
vioscreen_isomalt
0.0
vioscreen_joules
7806.327397
vioscreen_juice_servings
0.00455
vioscreen_lactitol
0.0
vioscreen_lactose
22.05462998
vioscreen_legumes
0.047561646
vioscreen_leucine
5.7546018839999995
vioscreen_line_gi
295.6918236
vioscreen_low_fat_dairy_serving
0.10679000000000001
vioscreen_lutzeax
14534.424659999999
vioscreen_lycopene
13824.5863
vioscreen_lysine
5.134629508
vioscreen_m_egg
4.004520615
vioscreen_m_fish_hi
0.21147945899999998
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.021424657000000003
vioscreen_m_meat
0.702246595
vioscreen_m_mpf
2.031835603
vioscreen_m_nutsd
0.005561644
vioscreen_m_organ
0.47375342
vioscreen_m_poult
0.622931493
vioscreen_m_soy
0.000767123
vioscreen_magnes
302.195869
vioscreen_maltitol
0.0
vioscreen_maltose
0.430520588
vioscreen_mangan
2.601233245
vioscreen_mannitol
0.552465737
vioscreen_methhis3
6.24769772
vioscreen_methion
1.8097532509999998
vioscreen_mfa141
0.064657535
vioscreen_mfa161
1.7405475769999998
vioscreen_mfa181
43.10687607
vioscreen_mfa201
0.332027425
vioscreen_mfa221
0.04789041
vioscreen_mfatot
45.41840218
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
14.11898545
vioscreen_nccglbr
59.40115582
vioscreen_nccglgr
41.5473673
vioscreen_niacin
12.32345222
vioscreen_niacineq
26.19561751
vioscreen_nitrogen
11.51630191
vioscreen_non_fried_fish_servings
0.37115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.248246702
vioscreen_oxalic
696.1862586
vioscreen_oxalicm
720.8190068
vioscreen_pantothe
7.9687941460000005
vioscreen_pectins
3.594136612
vioscreen_pfa182
13.34520816
vioscreen_pfa183
2.040657775
vioscreen_pfa184
0.009287670999999999
vioscreen_pfa204
0.386958919
vioscreen_pfa205
0.040630138999999996
vioscreen_pfa225
0.017780821000000002
vioscreen_pfa226
0.140082184
vioscreen_pfatot
16.08736756
vioscreen_phenylal
3.448383321
vioscreen_phosphor
1287.712158
vioscreen_phytic
201.4811858
vioscreen_pinitol
0.000109589
vioscreen_potass
3502.846575
vioscreen_procdate
10/28/15
vioscreen_proline
4.014027718
vioscreen_protanim
57.54830372
vioscreen_protein
72.23014234
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.6813704
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
188.0
vioscreen_retinol
1782.6849320000001
vioscreen_rgrain
0.7216438190000001
vioscreen_ribofla
2.947041216
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.56995
vioscreen_satoco
0.0
vioscreen_selenium
112.8975385
vioscreen_serine
4.0346301769999995
vioscreen_sfa100
1.6659450580000001
vioscreen_sfa120
1.722931828
vioscreen_sfa140
5.514549109
vioscreen_sfa160
25.70243739
vioscreen_sfa170
0.39021915799999995
vioscreen_sfa180
10.74991639
vioscreen_sfa200
0.21197261
vioscreen_sfa220
0.087315081
vioscreen_sfa40
2.042438329
vioscreen_sfa60
1.3655616240000001
vioscreen_sfa80
0.936301286
vioscreen_sfatot
50.51627783
vioscreen_sodium
3560.55
vioscreen_sorbitol
0.27402743
vioscreen_srvid
20436.0
vioscreen_starch
22.08816353
vioscreen_started
8/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.50326145
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
0.880520504
vioscreen_tfa161t
0.02139726
vioscreen_tfa181t
3.223807724
vioscreen_tfa182t
0.481753331
vioscreen_tgrain
0.9966848709999999
vioscreen_thiamin
0.974000027
vioscreen_threonin
3.124712382
vioscreen_time
26.0
vioscreen_totaltfa
3.83208175
vioscreen_totcla
0.37926025399999996
vioscreen_totfolat
422.7410959
vioscreen_totsugar
59.87696383
vioscreen_tryptoph
0.8315889540000001
vioscreen_tyrosine
2.786273946
vioscreen_user_id
20436.0
vioscreen_v_drkgr
0.76860268
vioscreen_v_orange
0.433095895
vioscreen_v_other
0.44169859200000006
vioscreen_v_potato
0.126219177
vioscreen_v_starcy
0.166876722
vioscreen_v_tomato
2.266821958
vioscreen_v_total
4.203342385
vioscreen_valine
4.0108766319999996
vioscreen_veg5_day
7.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
8.4
vioscreen_visit
1.0
vioscreen_vita_iu
29892.276710000002
vioscreen_vita_rae
2980.056164
vioscreen_vita_re
4177.424315
vioscreen_vitb12
11.14665762
vioscreen_vitb6
1.6494520209999999
vioscreen_vitc
122.80902179999998
vioscreen_vitd
11.49241091
vioscreen_vitd2
0.000191781
vioscreen_vitd3
11.49224636
vioscreen_vitd_iu
459.6964362
vioscreen_vite_iu
21.06145254
vioscreen_vitk
529.2669521
vioscreen_water
2722.989041
vioscreen_weight
Not provided
vioscreen_wgrain
0.27501371199999997
vioscreen_whole_grain_servings
0.22444
vioscreen_xylitol
0.040219179
vioscreen_zinc
9.290000936
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
3.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)