American Gut Project; 10317.000022986
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632597
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022986
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22986
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1956.0
bmi
23.0
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-15
collection month
January
collection season
Winter
collection time
16:40
collection_timestamp
2015-01-15 16:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Far West
elevation
44.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
df771f9c2d7e43a85d14b204beaf2793bc7a1d80c4d0fc58e0a2dba80fc5b6832f9970b5a851e4d69c0ad3b6d251bb088350467f86fdb65fb13a4376337b64f1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
61.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-150.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000022986
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AK
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
6d44eac001f64af9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.144219176
vioscreen_a_cal
15.98008214
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.414109656
vioscreen_addsugar
21.90454837
vioscreen_adsugtot
18.97591503
vioscreen_age
215.0
vioscreen_alanine
4.508163996
vioscreen_alcohol
2.123561577
vioscreen_alcohol_servings
0.14422000000000001
vioscreen_alphacar
1028.3879279999999
vioscreen_alphtoce
12.79394665
vioscreen_alphtoco
10.96504174
vioscreen_arginine
5.280685467
vioscreen_ash
24.17715111
vioscreen_aspartam
0.0
vioscreen_aspartic
8.446631528
vioscreen_avcarb
202.1795377
vioscreen_bcodeid
Not provided
vioscreen_betacar
6071.786986
vioscreen_betacryp
163.30244009999998
vioscreen_betaine
157.5609054
vioscreen_betatoco
0.484109622
vioscreen_biochana
0.019342466000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
426.2109161
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.99019
vioscreen_calcium_servings
2.6524099999999997
vioscreen_calories
2136.0436640000003
vioscreen_carbo
234.121875
vioscreen_cholest
332.32365150000004
vioscreen_choline
413.92324489999993
vioscreen_clac9t11
0.157013681
vioscreen_clat10c12
0.034410962999999996
vioscreen_copper
1.4725758169999998
vioscreen_coumest
0.320219171
vioscreen_cystine
1.21879448
vioscreen_d_cheese
0.722054761
vioscreen_d_milk
0.124438351
vioscreen_d_tot_soym
0.990191818
vioscreen_d_total
0.990191818
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.550849308
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.561370264
vioscreen_discfat_oil
26.92027237
vioscreen_discfat_sol
51.89909568
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0010136989999999999
vioscreen_f_citmlb
0.527095889
vioscreen_f_nj_citmlb
0.519150742
vioscreen_f_nj_other
1.27726014
vioscreen_f_nj_total
1.796411133
vioscreen_f_other
1.2789861809999998
vioscreen_f_total
1.806082446
vioscreen_fat
96.89234803
vioscreen_fiber
31.94273331
vioscreen_fibh2o
11.58989057
vioscreen_fibinso
20.31027531
vioscreen_finished
1/13/15
vioscreen_fish_servings
2.7246200000000003
vioscreen_fol_deqv
521.2982449
vioscreen_fol_nat
311.2733733
vioscreen_fol_syn
123.4905608
vioscreen_formontn
0.004109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.6
vioscreen_fructose
20.24090192
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.679698871
vioscreen_g_total
7.04156143
vioscreen_g_whl
2.361862893
vioscreen_galactos
0.339369871
vioscreen_gammtoco
16.00945259
vioscreen_gender
false
vioscreen_genistn
0.522520426
vioscreen_glac
98.51537885
vioscreen_gltc
110.10480520000002
vioscreen_glucose
17.55753692
vioscreen_glutamic
18.07564079
vioscreen_glycine
4.248657227
vioscreen_glycitn
0.06435616400000001
vioscreen_grams
2935.5174660000002
vioscreen_hei2010_dairy
3.6
vioscreen_hei2010_empty_calories
15.9
vioscreen_hei2010_fatty_acids
4.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.4
vioscreen_hei2010_score
69.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.4
vioscreen_hei_drk_g_org_veg_leg
4.7
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.5
vioscreen_hei_score
70.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
2.523780802
vioscreen_inositol
0.074109587
vioscreen_iron
14.73462784
vioscreen_isoleuc
4.046820821
vioscreen_isomalt
0.0
vioscreen_joules
8937.20137
vioscreen_juice_servings
0.01945
vioscreen_lactitol
0.0
vioscreen_lactose
4.38890431
vioscreen_legumes
0.130904117
vioscreen_leucine
6.973123127000001
vioscreen_line_gi
489.1484589
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
2349.143322
vioscreen_lycopene
10316.17671
vioscreen_lysine
6.132712837000001
vioscreen_m_egg
0.63008218
vioscreen_m_fish_hi
0.607452058
vioscreen_m_fish_lo
0.945287751
vioscreen_m_frank
0.9611232809999999
vioscreen_m_meat
2.362876746
vioscreen_m_mpf
5.634191727
vioscreen_m_nutsd
1.0864383229999999
vioscreen_m_organ
0.0
vioscreen_m_poult
0.757616435
vioscreen_m_soy
0.0041917809999999995
vioscreen_magnes
353.5737586
vioscreen_maltitol
0.0
vioscreen_maltose
3.225836432
vioscreen_mangan
5.34632953
vioscreen_mannitol
0.9172053920000001
vioscreen_methhis3
19.54186243
vioscreen_methion
2.057452309
vioscreen_mfa141
0.14983560199999998
vioscreen_mfa161
1.573424624
vioscreen_mfa181
31.92485285
vioscreen_mfa201
0.416876806
vioscreen_mfa221
0.074082194
vioscreen_mfatot
34.49855255
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.96504174
vioscreen_nccglbr
149.85239730000004
vioscreen_nccglgr
104.8199165
vioscreen_niacin
26.739696600000002
vioscreen_niacineq
42.78448737
vioscreen_nitrogen
15.03375027
vioscreen_non_fried_fish_servings
2.7246200000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.446685373
vioscreen_oxalic
265.0453767
vioscreen_oxalicm
235.36628849999997
vioscreen_pantothe
7.284958931
vioscreen_pectins
4.662300674
vioscreen_pfa182
19.48435493
vioscreen_pfa183
2.133753612
vioscreen_pfa184
0.018876713
vioscreen_pfa204
0.15484932699999998
vioscreen_pfa205
0.075643843
vioscreen_pfa225
0.039808218
vioscreen_pfa226
0.179726023
vioscreen_pfatot
22.19471185
vioscreen_phenylal
4.006712195
vioscreen_phosphor
1406.989384
vioscreen_phytic
972.1101027000001
vioscreen_pinitol
0.004027397
vioscreen_potass
3627.656507
vioscreen_procdate
10/28/15
vioscreen_proline
5.765095917000001
vioscreen_protanim
58.51105522
vioscreen_protein
92.30718108
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.79482021
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
620.0
vioscreen_retinol
306.1934717
vioscreen_rgrain
4.6026022719999995
vioscreen_ribofla
2.2064112000000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.03438
vioscreen_satoco
0.0
vioscreen_selenium
156.1327055
vioscreen_serine
4.198356566
vioscreen_sfa100
0.616493162
vioscreen_sfa120
0.744931407
vioscreen_sfa140
2.8672871630000003
vioscreen_sfa160
17.45103944
vioscreen_sfa170
0.21378083899999997
vioscreen_sfa180
7.464166845
vioscreen_sfa200
0.21758907800000002
vioscreen_sfa220
0.252301423
vioscreen_sfa40
0.755068593
vioscreen_sfa60
0.420328804
vioscreen_sfa80
0.27553424600000004
vioscreen_sfatot
31.819504499999997
vioscreen_sodium
4566.144863
vioscreen_sorbitol
1.066602566
vioscreen_srvid
16868.0
vioscreen_starch
116.2164063
vioscreen_started
1/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.83619569
vioscreen_sweet_servings
0.27398
vioscreen_tagatose
1.156794467
vioscreen_tfa161t
0.099671236
vioscreen_tfa181t
2.026767344
vioscreen_tfa182t
0.382493111
vioscreen_tgrain
7.443916551
vioscreen_thiamin
1.7896435880000001
vioscreen_threonin
3.475343135
vioscreen_time
35.0
vioscreen_totaltfa
2.565835697
vioscreen_totcla
0.19180824600000002
vioscreen_totfolat
434.7638699
vioscreen_totsugar
68.33563249
vioscreen_tryptoph
0.963945446
vioscreen_tyrosine
3.024958864
vioscreen_user_id
16868.0
vioscreen_v_drkgr
0.385863004
vioscreen_v_orange
0.279561625
vioscreen_v_other
1.426931386
vioscreen_v_potato
0.6952054790000001
vioscreen_v_starcy
0.05115069
vioscreen_v_tomato
0.608219094
vioscreen_v_total
3.447122485
vioscreen_valine
4.603972135
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
12133.849320000001
vioscreen_vita_rae
861.8309932
vioscreen_vita_re
1417.466524
vioscreen_vitb12
4.675917701
vioscreen_vitb6
2.1830685130000003
vioscreen_vitc
123.2729666
vioscreen_vitd
5.992164089
vioscreen_vitd2
0.0030410959999999996
vioscreen_vitd3
5.989177547000001
vioscreen_vitd_iu
239.6865636
vioscreen_vite_iu
16.31065791
vioscreen_vitk
167.0761879
vioscreen_water
2521.035616
vioscreen_weight
Not provided
vioscreen_wgrain
2.8412875239999997
vioscreen_whole_grain_servings
2.36186
vioscreen_xylitol
0.033150689
vioscreen_zinc
12.77945339
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)