10317.000002248; American Gut Project
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632813
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:26:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000002248
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000002248
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Self-diagnosed
birth year
1956.0
bmi
23.86
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Not provided
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-20
collection month
May
collection season
Spring
collection time
08:00
collection_timestamp
2015-05-20 08:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Self-diagnosed
diabetes type
Not provided
diet type
Not provided
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southeast
elevation
5.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
5d5efcc7c3ff1ef4e108080625ff250f9bf7bc38ec046c53b35855b29884855652769fe2626a5c0d22184bf59ffa637462616ef866d4782f85aaf93ef2965869
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
26.4
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000002248
sample type
Mouth
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Not provided
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f0994d720ff8a89d
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
15.93649267
vioscreen_addsugar
92.06706978
vioscreen_adsugtot
70.07389234
vioscreen_age
215.0
vioscreen_alanine
2.964876525
vioscreen_alcohol
0.010630137
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1870.145719
vioscreen_alphtoce
15.8740823
vioscreen_alphtoco
14.26553537
vioscreen_arginine
4.126492937
vioscreen_ash
16.62424952
vioscreen_aspartam
0.0
vioscreen_aspartic
6.307369702000001
vioscreen_avcarb
185.4444563
vioscreen_bcodeid
Not provided
vioscreen_betacar
8572.058904000001
vioscreen_betacryp
27.37274187
vioscreen_betaine
64.94803617
vioscreen_betatoco
0.533945246
vioscreen_biochana
0.013315068000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
135.7493151
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.93
vioscreen_calcium_servings
2.2223
vioscreen_calories
1838.4727739999998
vioscreen_carbo
207.2673159
vioscreen_cholest
207.2358519
vioscreen_choline
298.03505989999996
vioscreen_clac9t11
0.084876711
vioscreen_clat10c12
0.019178082
vioscreen_copper
1.333096021
vioscreen_coumest
0.09863013699999999
vioscreen_cystine
0.819671213
vioscreen_d_cheese
0.19879451399999998
vioscreen_d_milk
0.6698904379999999
vioscreen_d_tot_soym
1.0712328770000001
vioscreen_d_total
0.930000033
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
1.666383675
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.186575443
vioscreen_discfat_oil
45.17473245
vioscreen_discfat_sol
28.53870933
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.077315072
vioscreen_f_nj_citmlb
0.069780825
vioscreen_f_nj_other
0.248630137
vioscreen_f_nj_total
0.318684972
vioscreen_f_other
0.248630137
vioscreen_f_total
0.326246622
vioscreen_fat
91.87653039
vioscreen_fiber
21.67433112
vioscreen_fibh2o
5.702739726
vioscreen_fibinso
15.94391722
vioscreen_finished
5/20/15
vioscreen_fish_servings
2.4584599999999996
vioscreen_fol_deqv
339.37163960000004
vioscreen_fol_nat
250.6135488
vioscreen_fol_syn
52.1900899
vioscreen_formontn
0.0034246579999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.17159000000000002
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.7
vioscreen_fructose
19.76030073
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
2.435123308
vioscreen_g_total
3.1889588239999997
vioscreen_g_whl
0.7538355999999999
vioscreen_galactos
0.947862933
vioscreen_gammtoco
13.38090753
vioscreen_gender
false
vioscreen_genistn
2.134137214
vioscreen_glac
91.35303938
vioscreen_gltc
98.19156678
vioscreen_glucose
24.69509578
vioscreen_glutamic
12.04468509
vioscreen_glycine
2.796109636
vioscreen_glycitn
0.305123274
vioscreen_grams
1768.4832190000002
vioscreen_hei2010_dairy
4.5
vioscreen_hei2010_empty_calories
13.8
vioscreen_hei2010_fatty_acids
9.8
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.2
vioscreen_hei2010_whole_grains
2.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
2.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.5
vioscreen_hei_non_juice_frt
2.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.8
vioscreen_hei_score
63.5
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
14.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.4
vioscreen_height
Not provided
vioscreen_histidin
1.632959152
vioscreen_inositol
0.07610958599999999
vioscreen_iron
9.970629548
vioscreen_isoleuc
2.6895616510000004
vioscreen_isomalt
0.0
vioscreen_joules
7692.170548
vioscreen_juice_servings
0.015119999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
8.914219017999999
vioscreen_legumes
0.15931506199999998
vioscreen_leucine
4.744603823
vioscreen_line_gi
417.7166096
vioscreen_low_fat_dairy_serving
0.10189
vioscreen_lutzeax
4695.434247
vioscreen_lycopene
6900.065068000001
vioscreen_lysine
3.92739726
vioscreen_m_egg
0.526054821
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.643260297
vioscreen_m_frank
0.18701368399999999
vioscreen_m_meat
0.241178079
vioscreen_m_mpf
2.561945333
vioscreen_m_nutsd
3.3256712189999997
vioscreen_m_organ
0.0
vioscreen_m_poult
0.7327945240000001
vioscreen_m_soy
0.163808211
vioscreen_magnes
321.8860659
vioscreen_maltitol
0.0
vioscreen_maltose
6.289041096
vioscreen_mangan
3.168930932
vioscreen_mannitol
0.27632879
vioscreen_methhis3
8.998959225
vioscreen_methion
1.316904063
vioscreen_mfa141
0.017452056
vioscreen_mfa161
0.849725927
vioscreen_mfa181
34.98207673
vioscreen_mfa201
0.60652052
vioscreen_mfa221
0.128986285
vioscreen_mfatot
36.7637789
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2.0
vioscreen_natoco
14.23602981
vioscreen_nccglbr
173.82101880000002
vioscreen_nccglgr
121.58186
vioscreen_niacin
19.12315122
vioscreen_niacineq
30.99145709
vioscreen_nitrogen
10.39695995
vioscreen_non_fried_fish_servings
2.4584599999999996
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.392329135
vioscreen_oxalic
258.9231378
vioscreen_oxalicm
284.0479452
vioscreen_pantothe
4.597095395
vioscreen_pectins
3.748000388
vioscreen_pfa182
21.45172571
vioscreen_pfa183
1.9969863680000002
vioscreen_pfa184
0.029178084
vioscreen_pfa204
0.097643834
vioscreen_pfa205
0.106684907
vioscreen_pfa225
0.040219179
vioscreen_pfa226
0.219534239
vioscreen_pfatot
24.06739619
vioscreen_phenylal
2.849452189
vioscreen_phosphor
1091.790925
vioscreen_phytic
801.4185788
vioscreen_pinitol
0.070657537
vioscreen_potass
2494.37363
vioscreen_procdate
10/28/15
vioscreen_proline
3.624383963
vioscreen_protanim
32.1088506
vioscreen_protein
62.78664384
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.67896244
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
434.0
vioscreen_retinol
264.2684075
vioscreen_rgrain
2.180164243
vioscreen_ribofla
1.444109522
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.3421100000000001
vioscreen_satoco
0.064684933
vioscreen_selenium
98.64643622
vioscreen_serine
3.1038353489999997
vioscreen_sfa100
0.447753446
vioscreen_sfa120
0.810054748
vioscreen_sfa140
1.8971509119999999
vioscreen_sfa160
13.30369622
vioscreen_sfa170
0.08712328
vioscreen_sfa180
5.521589389
vioscreen_sfa200
0.368438344
vioscreen_sfa220
0.5778903910000001
vioscreen_sfa40
0.5038630239999999
vioscreen_sfa60
0.324054791
vioscreen_sfa80
0.284082178
vioscreen_sfatot
24.54689908
vioscreen_sodium
3194.941096
vioscreen_sorbitol
0.178630129
vioscreen_srvid
18730.0
vioscreen_starch
60.02693707
vioscreen_started
5/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
35.91876873
vioscreen_sweet_servings
0.43836
vioscreen_tagatose
1.383835717
vioscreen_tfa161t
0.041863013
vioscreen_tfa181t
1.3491505240000001
vioscreen_tfa182t
0.34723285
vioscreen_tgrain
3.389424698
vioscreen_thiamin
1.105232803
vioscreen_threonin
2.367370104
vioscreen_time
28.0
vioscreen_totaltfa
1.78876719
vioscreen_totcla
0.10432878300000001
vioscreen_totfolat
302.80310360000004
vioscreen_totsugar
96.59439212
vioscreen_tryptoph
0.712794557
vioscreen_tyrosine
2.168492983
vioscreen_user_id
18730.0
vioscreen_v_drkgr
0.49389042299999997
vioscreen_v_orange
0.44619174100000003
vioscreen_v_other
0.929260254
vioscreen_v_potato
0.231808221
vioscreen_v_starcy
0.092602738
vioscreen_v_tomato
0.32950686100000004
vioscreen_v_total
2.523506394
vioscreen_valine
3.1084930839999996
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
16748.70685
vioscreen_vita_rae
1057.6709759999999
vioscreen_vita_re
1851.07089
vioscreen_vitb12
2.991808246
vioscreen_vitb6
1.538081924
vioscreen_vitc
66.34911173
vioscreen_vitd
6.658739565
vioscreen_vitd2
0.364547939
vioscreen_vitd3
6.294218884
vioscreen_vitd_iu
266.34958259999996
vioscreen_vite_iu
21.29312393
vioscreen_vitk
244.25515840000003
vioscreen_water
1408.893408
vioscreen_weight
Not provided
vioscreen_wgrain
1.20926012
vioscreen_whole_grain_servings
0.75384
vioscreen_xylitol
0.016301373
vioscreen_zinc
8.178027344
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)