American Gut Project; 10317.000031450
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634311
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031450
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
child
age years
6.0
age_corrected
6.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031450
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
2009.0
bmi
12.71
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/07/2015
collection month
August
collection season
Summer
collection time
11:50
collection_timestamp
2015-08-07 11:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Plains
elevation
321.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
111.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Never
host common name
human
host subject id
b9f0e0181040bef4fdf34c4b16426f793ef1efc5692ec54691047c1e8939d0449897d5cc68cf82f5b4c3fe334182edde1948af5b6db21380769261f3c0f8c67a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
44.0
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
No
longitude
-92.5
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031450
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MN
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
4fecba3e1c2d5548
teethbrushing_frequency
Occasionally (1-2 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Never
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.773588667
vioscreen_addsugar
25.57679527
vioscreen_adsugtot
25.32901327
vioscreen_age
215.0
vioscreen_alanine
2.545260327
vioscreen_alcohol
0.000821918
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
58.06093215
vioscreen_alphtoce
7.726603302000001
vioscreen_alphtoco
6.366192208999999
vioscreen_arginine
2.7250409689999997
vioscreen_ash
6.591150738
vioscreen_aspartam
0.0
vioscreen_aspartic
5.64271257
vioscreen_avcarb
92.82112586
vioscreen_bcodeid
Not provided
vioscreen_betacar
1134.481164
vioscreen_betacryp
717.7242722999999
vioscreen_betaine
17.5945473
vioscreen_betatoco
0.206849294
vioscreen_biochana
0.009479452
vioscreen_bmi
Not provided
vioscreen_caffeine
1.679698704
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.059860000000000003
vioscreen_calcium_servings
0.59992
vioscreen_calories
957.7028252999999
vioscreen_carbo
106.3274294
vioscreen_cholest
199.6738014
vioscreen_choline
257.8132705
vioscreen_clac9t11
0.053917809000000004
vioscreen_clat10c12
0.021589043
vioscreen_copper
0.665369865
vioscreen_coumest
0.00939726
vioscreen_cystine
0.579068495
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.05986301
vioscreen_d_tot_soym
0.05986301
vioscreen_d_total
0.05986301
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.015972603000000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.8212599660000004
vioscreen_discfat_oil
20.51246522
vioscreen_discfat_sol
7.278219312
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
1.3981643469999998
vioscreen_f_nj_citmlb
1.3981643469999998
vioscreen_f_nj_other
2.842410905
vioscreen_f_nj_total
4.2405751689999995
vioscreen_f_other
2.842410905
vioscreen_f_total
4.2405751689999995
vioscreen_fat
43.17994167
vioscreen_fiber
13.50764261
vioscreen_fibh2o
6.9244936589999995
vioscreen_fibinso
6.616301236
vioscreen_finished
8/7/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
113.4638913
vioscreen_fol_nat
113.4638913
vioscreen_fol_syn
0.0
vioscreen_formontn
0.00939726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.0
vioscreen_frtsumm
8.5
vioscreen_fructose
20.25531491
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
0.0
vioscreen_g_total
0.0
vioscreen_g_whl
0.0
vioscreen_galactos
0.186931495
vioscreen_gammtoco
12.40167086
vioscreen_gender
false
vioscreen_genistn
0.008383561
vioscreen_glac
44.45731753
vioscreen_gltc
50.4885488
vioscreen_glucose
23.34622218
vioscreen_glutamic
6.447205426
vioscreen_glycine
2.366547885
vioscreen_glycitn
0.0
vioscreen_grams
1312.617038
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
0.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
64.2
vioscreen_hei2010_sea_foods_plant_protiens
0.4
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
0.4
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
0.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.7
vioscreen_hei_score
66.6
vioscreen_hei_sodium
10.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
0.4
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.387725997
vioscreen_inositol
0.025205479
vioscreen_iron
4.762493311
vioscreen_isoleuc
1.9407947280000002
vioscreen_isomalt
0.0
vioscreen_joules
4007.026712
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.834054774
vioscreen_legumes
0.0
vioscreen_leucine
3.302876846
vioscreen_line_gi
279.5597603
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
826.3444348999999
vioscreen_lycopene
266.8497432
vioscreen_lysine
3.4916440360000003
vioscreen_m_egg
0.502356166
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
4.371205453
vioscreen_m_mpf
4.371205453
vioscreen_m_nutsd
0.056712331
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
108.52898119999999
vioscreen_maltitol
0.0
vioscreen_maltose
2.603342553
vioscreen_mangan
0.43764385100000003
vioscreen_mannitol
0.000136986
vioscreen_methhis3
19.11364378
vioscreen_methion
1.1176712659999999
vioscreen_mfa141
0.118438365
vioscreen_mfa161
0.7573425290000001
vioscreen_mfa181
13.16893194
vioscreen_mfa201
0.080904111
vioscreen_mfa221
0.000739726
vioscreen_mfatot
14.19388913
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.366192208999999
vioscreen_nccglbr
56.536189
vioscreen_nccglgr
39.55468215
vioscreen_niacin
11.77241144
vioscreen_niacineq
18.61205453
vioscreen_nitrogen
7.383890732
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.3865205109999998
vioscreen_oxalic
38.830846
vioscreen_oxalicm
39.05841182
vioscreen_pantothe
2.4298083999999998
vioscreen_pectins
4.311835469
vioscreen_pfa182
11.41575343
vioscreen_pfa183
1.368493234
vioscreen_pfa184
0.0
vioscreen_pfa204
0.075726026
vioscreen_pfa205
0.0026849309999999998
vioscreen_pfa225
0.006520548
vioscreen_pfa226
0.009479452
vioscreen_pfatot
12.88937018
vioscreen_phenylal
1.771616478
vioscreen_phosphor
483.5272688
vioscreen_phytic
43.90624465
vioscreen_pinitol
0.0
vioscreen_potass
1805.916438
vioscreen_procdate
10/28/15
vioscreen_proline
2.00336981
vioscreen_protanim
38.94002836
vioscreen_protein
45.73641374
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
6.796384043
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
221.0
vioscreen_retinol
51.75303938
vioscreen_rgrain
0.0
vioscreen_ribofla
0.67528766
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.0
vioscreen_selenium
57.25410424
vioscreen_serine
1.8726303309999999
vioscreen_sfa100
0.061479454
vioscreen_sfa120
0.06139726
vioscreen_sfa140
0.562082202
vioscreen_sfa160
7.563178242999999
vioscreen_sfa170
0.013945206000000002
vioscreen_sfa180
3.6738080589999997
vioscreen_sfa200
0.070383563
vioscreen_sfa220
0.064794525
vioscreen_sfa40
0.035972603
vioscreen_sfa60
0.011315068999999999
vioscreen_sfa80
0.011945205
vioscreen_sfatot
12.15397314
vioscreen_sodium
602.6521832000001
vioscreen_sorbitol
1.792410905
vioscreen_srvid
20346.0
vioscreen_starch
2.531808179
vioscreen_started
8/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.3966021
vioscreen_sweet_servings
0.26093
vioscreen_tagatose
1.1556985929999999
vioscreen_tfa161t
0.026547947000000002
vioscreen_tfa181t
0.746136893
vioscreen_tfa182t
0.24216438199999998
vioscreen_tgrain
0.0
vioscreen_thiamin
0.683479497
vioscreen_threonin
1.76756157
vioscreen_time
5.0
vioscreen_totaltfa
1.017945256
vioscreen_totcla
0.075232879
vioscreen_totfolat
113.4638913
vioscreen_totsugar
87.97493579
vioscreen_tryptoph
0.40961642299999995
vioscreen_tyrosine
1.417671266
vioscreen_user_id
20346.0
vioscreen_v_drkgr
0.0
vioscreen_v_orange
0.0
vioscreen_v_other
0.0
vioscreen_v_potato
0.09336986800000001
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
0.09336986800000001
vioscreen_valine
2.1760820780000003
vioscreen_veg5_day
0.1
vioscreen_vegetable_servings
0.0
vioscreen_vegsumm
0.2
vioscreen_visit
1.0
vioscreen_vita_iu
2711.8171230000003
vioscreen_vita_rae
178.61822560000002
vioscreen_vita_re
305.48199910000005
vioscreen_vitb12
2.551890418
vioscreen_vitb6
0.826657564
vioscreen_vitc
151.95014980000002
vioscreen_vitd
1.204931557
vioscreen_vitd2
0.0
vioscreen_vitd3
1.204931557
vioscreen_vitd_iu
48.19726228
vioscreen_vite_iu
9.488903976
vioscreen_vitk
47.46994863
vioscreen_water
1115.440154
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.061890411
vioscreen_zinc
6.828793878
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
15.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)