American Gut Project; 10317.000031536
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634330
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031536
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031536
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1957.0
bmi
39.82
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/04/2015
collection month
August
collection season
Summer
collection time
06:15
collection_timestamp
2015-08-04 06:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
22.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
1974581e00da16b89a39bd541b57328362be1c578b546ec884dbbf94fa38bd39f498bd62c666d362fff2196babc13a325427cb8713f89417b3da9c7effeca95e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-121.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031536
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
b98c5ac966b754ff
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.340082184
vioscreen_a_cal
42.12460135
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.686219767000001
vioscreen_addsugar
26.83550942
vioscreen_adsugtot
23.69471319
vioscreen_age
215.0
vioscreen_alanine
3.3053975139999996
vioscreen_alcohol
5.099753518
vioscreen_alcohol_servings
0.34008
vioscreen_alphacar
532.4934932
vioscreen_alphtoce
14.30577777
vioscreen_alphtoco
13.19876659
vioscreen_arginine
4.134163968999999
vioscreen_ash
17.9348499
vioscreen_aspartam
0.0
vioscreen_aspartic
6.603781839
vioscreen_avcarb
91.30592894
vioscreen_bcodeid
Not provided
vioscreen_betacar
15587.03973
vioscreen_betacryp
100.47128640000001
vioscreen_betaine
72.3312714
vioscreen_betatoco
0.323917797
vioscreen_biochana
0.002136986
vioscreen_bmi
Not provided
vioscreen_caffeine
26.29170056
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.1402700000000001
vioscreen_calcium_servings
2.93345
vioscreen_calories
1471.498801
vioscreen_carbo
110.4453232
vioscreen_cholest
306.20511560000006
vioscreen_choline
340.92356589999997
vioscreen_clac9t11
0.09654795
vioscreen_clat10c12
0.019506849
vioscreen_copper
1.238191955
vioscreen_coumest
0.023424657999999998
vioscreen_cystine
0.801753298
vioscreen_d_cheese
0.7615616470000001
vioscreen_d_milk
0.320767128
vioscreen_d_tot_soym
1.1402740059999998
vioscreen_d_total
1.1402740059999998
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.19158902100000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.727917982
vioscreen_discfat_oil
32.11807845
vioscreen_discfat_sol
32.70920644
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00230137
vioscreen_f_citmlb
0.523561619
vioscreen_f_nj_citmlb
0.517095864
vioscreen_f_nj_other
0.7553972640000001
vioscreen_f_nj_total
1.272493127
vioscreen_f_other
0.7553972640000001
vioscreen_f_total
1.278958841
vioscreen_fat
86.08001926
vioscreen_fiber
19.09729104
vioscreen_fibh2o
4.1950121739999995
vioscreen_fibinso
15.02975439
vioscreen_finished
8/3/15
vioscreen_fish_servings
1.87096
vioscreen_fol_deqv
343.5495933
vioscreen_fol_nat
320.5528467
vioscreen_fol_syn
13.51657481
vioscreen_formontn
0.0013698629999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
9.70022073
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.726767093
vioscreen_g_total
1.171287725
vioscreen_g_whl
0.444493208
vioscreen_galactos
0.272630122
vioscreen_gammtoco
9.525068894
vioscreen_gender
false
vioscreen_genistn
0.267890408
vioscreen_glac
38.881391799999996
vioscreen_gltc
42.49767498
vioscreen_glucose
10.56342439
vioscreen_glutamic
11.52580801
vioscreen_glycine
2.8467663069999998
vioscreen_glycitn
0.043013700999999994
vioscreen_grams
3588.978767
vioscreen_hei2010_dairy
6.0
vioscreen_hei2010_empty_calories
15.2
vioscreen_hei2010_fatty_acids
5.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
62.6
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
13.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
1.8193148680000002
vioscreen_inositol
0.057835622999999996
vioscreen_iron
8.730793825
vioscreen_isoleuc
3.143369743
vioscreen_isomalt
0.0
vioscreen_joules
6156.749315
vioscreen_juice_servings
0.01299
vioscreen_lactitol
0.0
vioscreen_lactose
6.418931266
vioscreen_legumes
0.0014246570000000002
vioscreen_leucine
5.115725666
vioscreen_line_gi
210.2482877
vioscreen_low_fat_dairy_serving
0.057510000000000006
vioscreen_lutzeax
19875.29726
vioscreen_lycopene
2884.3363010000003
vioscreen_lysine
4.81082145
vioscreen_m_egg
0.90769854
vioscreen_m_fish_hi
0.640219158
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.208931492
vioscreen_m_meat
0.36027397299999997
vioscreen_m_mpf
3.551232743
vioscreen_m_nutsd
1.9083012830000001
vioscreen_m_organ
0.0
vioscreen_m_poult
1.915890545
vioscreen_m_soy
0.006109589
vioscreen_magnes
307.5455908
vioscreen_maltitol
0.0
vioscreen_maltose
1.88287688
vioscreen_mangan
2.757232415
vioscreen_mannitol
0.075479455
vioscreen_methhis3
13.40873823
vioscreen_methion
1.577835376
vioscreen_mfa141
0.086246579
vioscreen_mfa161
1.2814245770000001
vioscreen_mfa181
30.72211045
vioscreen_mfa201
0.437890416
vioscreen_mfa221
0.123506865
vioscreen_mfatot
32.8571463
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.19194403
vioscreen_nccglbr
72.14046447
vioscreen_nccglgr
50.46695741
vioscreen_niacin
16.15501258
vioscreen_niacineq
29.44901274
vioscreen_nitrogen
10.91019103
vioscreen_non_fried_fish_servings
1.87096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.1248765919999997
vioscreen_oxalic
518.2181935
vioscreen_oxalicm
560.0727312000001
vioscreen_pantothe
4.536164584
vioscreen_pectins
4.4974241489999995
vioscreen_pfa182
16.02605549
vioscreen_pfa183
1.764246609
vioscreen_pfa184
0.024657532000000003
vioscreen_pfa204
0.175013702
vioscreen_pfa205
0.087013704
vioscreen_pfa225
0.047013698
vioscreen_pfa226
0.202739726
vioscreen_pfatot
18.42978114
vioscreen_phenylal
2.96950717
vioscreen_phosphor
1042.3177230000001
vioscreen_phytic
415.4800942
vioscreen_pinitol
0.001232877
vioscreen_potass
2513.72774
vioscreen_procdate
10/28/15
vioscreen_proline
3.709040895
vioscreen_protanim
46.04721212
vioscreen_protein
67.12860659
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.08175032
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
237.0
vioscreen_retinol
321.8280822
vioscreen_rgrain
0.5772055429999999
vioscreen_ribofla
1.350219225
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.10121
vioscreen_satoco
0.014931506
vioscreen_selenium
84.18735017
vioscreen_serine
3.2315068489999996
vioscreen_sfa100
0.644082182
vioscreen_sfa120
0.998274126
vioscreen_sfa140
2.711753699
vioscreen_sfa160
14.67317798
vioscreen_sfa170
0.113068484
vioscreen_sfa180
5.916494542000001
vioscreen_sfa200
0.24717808600000002
vioscreen_sfa220
0.35273976799999995
vioscreen_sfa40
0.744767113
vioscreen_sfa60
0.422410939
vioscreen_sfa80
0.319369841
vioscreen_sfatot
27.61926102
vioscreen_sodium
2865.515753
vioscreen_sorbitol
0.46312331100000004
vioscreen_srvid
20299.0
vioscreen_starch
24.46553403
vioscreen_started
8/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.63260113
vioscreen_sweet_servings
0.78171
vioscreen_tagatose
1.521945232
vioscreen_tfa161t
0.056931509000000005
vioscreen_tfa181t
1.173013598
vioscreen_tfa182t
0.342712319
vioscreen_tgrain
1.176657397
vioscreen_thiamin
0.7459177509999999
vioscreen_threonin
2.665205613
vioscreen_time
24.0
vioscreen_totaltfa
1.58964409
vioscreen_totcla
0.11657534
vioscreen_totfolat
334.0691995
vioscreen_totsugar
54.83486729999999
vioscreen_tryptoph
0.7992330470000001
vioscreen_tyrosine
2.4714521019999998
vioscreen_user_id
20299.0
vioscreen_v_drkgr
1.667506889
vioscreen_v_orange
0.291369859
vioscreen_v_other
0.6884109709999999
vioscreen_v_potato
0.064301373
vioscreen_v_starcy
0.023369862
vioscreen_v_tomato
0.08065753
vioscreen_v_total
2.815616639
vioscreen_valine
3.5037534110000004
vioscreen_veg5_day
6.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
27577.74795
vioscreen_vita_rae
1647.121918
vioscreen_vita_re
2972.416096
vioscreen_vitb12
2.81443841
vioscreen_vitb6
1.6149312059999998
vioscreen_vitc
123.86836470000001
vioscreen_vitd
6.389425032
vioscreen_vitd2
0.000575342
vioscreen_vitd3
6.3888491279999995
vioscreen_vitd_iu
255.57700130000003
vioscreen_vite_iu
19.69378077
vioscreen_vitk
903.5083048
vioscreen_water
3318.064041
vioscreen_weight
Not provided
vioscreen_wgrain
0.599452063
vioscreen_whole_grain_servings
0.44448999999999994
vioscreen_xylitol
0.025972599
vioscreen_zinc
7.706931587000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
105.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)