American Gut Project; 10317.000026598
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633459
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026598
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26598
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1951.0
bmi
28.67
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-28
collection month
April
collection season
Spring
collection time
12:15
collection_timestamp
2015-04-28 12:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Far West
elevation
124.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
d0e88b07732a2311077442654a6996d8db8e213100a8a4c309ed4552f38c3b2911f06cb73b8d78a35d9f74c430fd1bb9aa8fea13aa6102536575df4ead9d351d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
45.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.7
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026598
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by an alternative medicine practitioner
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
88920bed81bf1c4c
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.16599999
vioscreen_a_cal
20.34704088
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
15.02698657
vioscreen_addsugar
73.76197025
vioscreen_adsugtot
65.39034675
vioscreen_age
215.0
vioscreen_alanine
3.8510411089999996
vioscreen_alcohol
2.663178076
vioscreen_alcohol_servings
0.166
vioscreen_alphacar
1318.9036820000001
vioscreen_alphtoce
16.53013966
vioscreen_alphtoco
14.15887334
vioscreen_arginine
4.714794922
vioscreen_ash
23.94906625
vioscreen_aspartam
15.97526086
vioscreen_aspartic
8.154959065
vioscreen_avcarb
262.6134204
vioscreen_bcodeid
Not provided
vioscreen_betacar
7124.095205
vioscreen_betacryp
83.25333904
vioscreen_betaine
193.43150680000002
vioscreen_betatoco
0.551945224
vioscreen_biochana
0.017999999
vioscreen_bmi
Not provided
vioscreen_caffeine
138.5724315
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
3.2897800000000004
vioscreen_calcium_servings
4.8557
vioscreen_calories
2288.627055
vioscreen_carbo
289.1196918
vioscreen_cholest
221.47547090000003
vioscreen_choline
408.6316353
vioscreen_clac9t11
0.058000005
vioscreen_clat10c12
0.014547945
vioscreen_copper
1.771808112
vioscreen_coumest
0.019753426
vioscreen_cystine
1.108027544
vioscreen_d_cheese
0.266630136
vioscreen_d_milk
2.8740274510000003
vioscreen_d_tot_soym
3.2897805410000003
vioscreen_d_total
3.2897805410000003
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.381780797
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.25030133
vioscreen_discfat_oil
38.81736944
vioscreen_discfat_sol
36.29929099
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001534247
vioscreen_f_citmlb
0.564082148
vioscreen_f_nj_citmlb
0.5095890829999999
vioscreen_f_nj_other
0.796575426
vioscreen_f_nj_total
1.3061918909999999
vioscreen_f_other
0.798301467
vioscreen_f_total
1.3624111230000002
vioscreen_fat
91.04705694
vioscreen_fiber
26.28068547
vioscreen_fibh2o
6.136958207999999
vioscreen_fibinso
20.18627328
vioscreen_finished
4/28/15
vioscreen_fish_servings
1.14846
vioscreen_fol_deqv
492.84375
vioscreen_fol_nat
329.8370505
vioscreen_fol_syn
95.80537243
vioscreen_formontn
0.003780822
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.05114
vioscreen_frt5_day
2.1
vioscreen_frtsumm
2.7
vioscreen_fructose
21.65901247
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.17536989
vioscreen_g_total
7.248849529
vioscreen_g_whl
3.0735067289999995
vioscreen_galactos
0.362520526
vioscreen_gammtoco
20.73323256
vioscreen_gender
false
vioscreen_genistn
0.645452045
vioscreen_glac
128.8345034
vioscreen_gltc
139.83588400000002
vioscreen_glucose
22.71739352
vioscreen_glutamic
18.47419333
vioscreen_glycine
3.3408768330000003
vioscreen_glycitn
0.10194520300000001
vioscreen_grams
4242.374315
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
15.9
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
87.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.0
vioscreen_hei_drk_g_org_veg_leg
4.5
vioscreen_hei_fruit
3.7
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.9
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.6
vioscreen_hei_score
85.0
vioscreen_hei_sodium
2.9
vioscreen_hei_sol_fat_alc_add_sug
15.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
2.39016431
vioscreen_inositol
0.109342476
vioscreen_iron
14.12959118
vioscreen_isoleuc
3.9758086739999996
vioscreen_isomalt
0.0
vioscreen_joules
9575.619863
vioscreen_juice_servings
0.11241
vioscreen_lactitol
0.0
vioscreen_lactose
38.25608412
vioscreen_legumes
0.035287669
vioscreen_leucine
7.044164036000001
vioscreen_line_gi
692.6942637
vioscreen_low_fat_dairy_serving
2.86479
vioscreen_lutzeax
6381.767808
vioscreen_lycopene
7049.458904000001
vioscreen_lysine
5.831862693
vioscreen_m_egg
0.535616522
vioscreen_m_fish_hi
0.39482191899999997
vioscreen_m_fish_lo
0.259698633
vioscreen_m_frank
0.399013655
vioscreen_m_meat
1.062027437
vioscreen_m_mpf
2.748684985
vioscreen_m_nutsd
2.225753492
vioscreen_m_organ
0.0
vioscreen_m_poult
0.633205466
vioscreen_m_soy
0.024000001
vioscreen_magnes
447.332363
vioscreen_maltitol
0.0
vioscreen_maltose
3.035205413
vioscreen_mangan
6.5221372
vioscreen_mannitol
0.375890444
vioscreen_methhis3
9.368521244
vioscreen_methion
1.975013712
vioscreen_mfa141
0.055616447
vioscreen_mfa161
0.7564383729999999
vioscreen_mfa181
34.76832994
vioscreen_mfa201
0.483424649
vioscreen_mfa221
0.070328767
vioscreen_mfatot
36.26243846
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.12936644
vioscreen_nccglbr
204.2137842
vioscreen_nccglgr
142.8469178
vioscreen_niacin
21.55071436
vioscreen_niacineq
38.68583851
vioscreen_nitrogen
14.76550728
vioscreen_non_fried_fish_servings
1.14846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.0858916819999997
vioscreen_oxalic
415.8012842
vioscreen_oxalicm
427.79118150000005
vioscreen_pantothe
6.617945338999999
vioscreen_pectins
3.786986301
vioscreen_pfa182
22.18898224
vioscreen_pfa183
2.864521351
vioscreen_pfa184
0.015917808000000002
vioscreen_pfa204
0.10169863800000001
vioscreen_pfa205
0.054410966
vioscreen_pfa225
0.025835615
vioscreen_pfa226
0.12572603599999999
vioscreen_pfatot
25.42490368
vioscreen_phenylal
4.153917955
vioscreen_phosphor
1829.9753420000002
vioscreen_phytic
974.3039384
vioscreen_pinitol
0.002246575
vioscreen_potass
3896.900685
vioscreen_procdate
10/28/15
vioscreen_proline
6.457097469
vioscreen_protanim
55.56035424
vioscreen_protein
90.150503
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.58824647
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
456.0
vioscreen_retinol
675.1736728999999
vioscreen_rgrain
4.10336981
vioscreen_ribofla
2.66536999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.63847
vioscreen_satoco
0.064684933
vioscreen_selenium
149.713902
vioscreen_serine
4.568300848
vioscreen_sfa100
0.36693148700000006
vioscreen_sfa120
1.54649307
vioscreen_sfa140
1.6438081919999998
vioscreen_sfa160
11.98279377
vioscreen_sfa170
0.06654795299999999
vioscreen_sfa180
5.622548561
vioscreen_sfa200
0.318383559
vioscreen_sfa220
0.452328742
vioscreen_sfa40
0.274767147
vioscreen_sfa60
0.133342461
vioscreen_sfa80
0.267342471
vioscreen_sfatot
23.03597228
vioscreen_sodium
3830.194521
vioscreen_sorbitol
0.8570136079999999
vioscreen_srvid
18601.0
vioscreen_starch
101.7538848
vioscreen_started
4/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
54.41241974
vioscreen_sweet_servings
2.66114
vioscreen_tagatose
2.037369736
vioscreen_tfa161t
0.027150685
vioscreen_tfa181t
2.405808039
vioscreen_tfa182t
0.42512324100000004
vioscreen_tgrain
7.556110203999999
vioscreen_thiamin
1.727369836
vioscreen_threonin
3.4044115880000003
vioscreen_time
51.0
vioscreen_totaltfa
2.951095623
vioscreen_totcla
0.073013703
vioscreen_totfolat
425.641524
vioscreen_totsugar
142.53096100000002
vioscreen_tryptoph
1.027972579
vioscreen_tyrosine
3.360356245
vioscreen_user_id
18601.0
vioscreen_v_drkgr
0.547205426
vioscreen_v_orange
0.279534222
vioscreen_v_other
0.9233425190000001
vioscreen_v_potato
0.41076710299999997
vioscreen_v_starcy
0.072575342
vioscreen_v_tomato
0.5740000270000001
vioscreen_v_total
2.8073974610000003
vioscreen_valine
4.7578629999999995
vioscreen_veg5_day
4.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
15296.66849
vioscreen_vita_rae
1327.271747
vioscreen_vita_re
1979.370377
vioscreen_vitb12
5.769397474
vioscreen_vitb6
1.847890525
vioscreen_vitc
98.69815925
vioscreen_vitd
10.72542474
vioscreen_vitd2
0.001287671
vioscreen_vitd3
10.724192
vioscreen_vitd_iu
429.01698949999997
vioscreen_vite_iu
21.12062687
vioscreen_vitk
295.7528896
vioscreen_water
3784.487671
vioscreen_weight
Not provided
vioscreen_wgrain
3.45276715
vioscreen_whole_grain_servings
3.0735099999999997
vioscreen_xylitol
0.032273977
vioscreen_zinc
12.29947961
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
75.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)