10317.000027835; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633236
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027835
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
Not provided
age years
Not provided
age_corrected
Not provided
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27835
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
20.01
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/08/2015
collection month
June
collection season
Summer
collection time
23:00
collection_timestamp
2015-06-08 23:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
Diagnosed by an alternative medicine practitioner
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
39.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c7c6c8a53f7d75c5587a7423da462d175f0c9afc07ebd0d0aafb1ce09a9d6baec10163a4b5b9f4c813607a7e942f53cf4227dd374adc6305baa58c88be0c4895
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
37.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027835
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
c3c3df6742664910
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.982685412999999
vioscreen_addsugar
42.29150524
vioscreen_adsugtot
37.300492299999995
vioscreen_age
215.0
vioscreen_alanine
5.807972362
vioscreen_alcohol
0.011232876000000001
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1014.3553939999999
vioscreen_alphtoce
13.62723405
vioscreen_alphtoco
12.71054821
vioscreen_arginine
6.398163929
vioscreen_ash
22.80736569
vioscreen_aspartam
0.0
vioscreen_aspartic
10.87430169
vioscreen_avcarb
126.0149187
vioscreen_bcodeid
Not provided
vioscreen_betacar
11202.79932
vioscreen_betacryp
375.599786
vioscreen_betaine
57.30925728
vioscreen_betatoco
0.209726036
vioscreen_biochana
0.012602738999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
99.46496147
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9442200000000001
vioscreen_calcium_servings
2.69014
vioscreen_calories
1762.5623289999999
vioscreen_carbo
154.5991866
vioscreen_cholest
717.7769692
vioscreen_choline
757.4582192
vioscreen_clac9t11
0.054876704000000005
vioscreen_clat10c12
0.01339726
vioscreen_copper
2.659506769
vioscreen_coumest
0.013452054
vioscreen_cystine
1.433616325
vioscreen_d_cheese
0.222684928
vioscreen_d_milk
0.435698627
vioscreen_d_tot_soym
0.944219135
vioscreen_d_total
0.944219135
vioscreen_d_yogurt
0.284821915
vioscreen_daidzein
2.352246763
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.9402741730000002
vioscreen_discfat_oil
22.541532
vioscreen_discfat_sol
24.54893247
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.607808194
vioscreen_f_nj_citmlb
0.5878081860000001
vioscreen_f_nj_other
2.110383669
vioscreen_f_nj_total
2.6982191110000002
vioscreen_f_other
2.110383669
vioscreen_f_total
2.718218911
vioscreen_fat
85.25977633
vioscreen_fiber
28.57901327
vioscreen_fibh2o
7.78090419
vioscreen_fibinso
20.86830453
vioscreen_finished
6/8/15
vioscreen_fish_servings
5.34731
vioscreen_fol_deqv
576.7169949
vioscreen_fol_nat
560.7633134
vioscreen_fol_syn
9.367452376000001
vioscreen_formontn
0.002136986
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.4
vioscreen_fructose
18.764958800000002
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.640137011
vioscreen_g_total
0.645589081
vioscreen_g_whl
0.005452055
vioscreen_galactos
0.6840821570000001
vioscreen_gammtoco
8.138109348
vioscreen_gender
false
vioscreen_genistn
2.471205285
vioscreen_glac
46.62041952
vioscreen_gltc
51.64027183
vioscreen_glucose
23.19156411
vioscreen_glutamic
16.75243739
vioscreen_glycine
4.752548092
vioscreen_glycitn
0.807808236
vioscreen_grams
4147.97774
vioscreen_hei2010_dairy
4.1
vioscreen_hei2010_empty_calories
18.6
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.8
vioscreen_hei_score
70.3
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
19.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.994958998
vioscreen_inositol
0.142876696
vioscreen_iron
13.089013000000001
vioscreen_isoleuc
5.093945981
vioscreen_isomalt
0.0
vioscreen_joules
7374.559589
vioscreen_juice_servings
0.04
vioscreen_lactitol
0.0
vioscreen_lactose
9.854274132999999
vioscreen_legumes
0.131780818
vioscreen_leucine
8.47693239
vioscreen_line_gi
261.0903682
vioscreen_low_fat_dairy_serving
0.30553
vioscreen_lutzeax
11879.32877
vioscreen_lycopene
1161.975856
vioscreen_lysine
8.460110097000001
vioscreen_m_egg
2.688054835
vioscreen_m_fish_hi
1.550849308
vioscreen_m_fish_lo
1.496465814
vioscreen_m_frank
0.02739726
vioscreen_m_meat
2.315369823
vioscreen_m_mpf
7.834383695
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.586547935
vioscreen_m_poult
1.8578081519999998
vioscreen_m_soy
0.135616428
vioscreen_magnes
332.9829195
vioscreen_maltitol
0.0
vioscreen_maltose
2.5400001
vioscreen_mangan
3.1539172860000004
vioscreen_mannitol
0.310904098
vioscreen_methhis3
27.15558915
vioscreen_methion
2.765479519
vioscreen_mfa141
0.09005480199999999
vioscreen_mfa161
2.124356037
vioscreen_mfa181
35.32465753
vioscreen_mfa201
0.442109576
vioscreen_mfa221
0.259616444
vioscreen_mfatot
38.46227793
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
12.71054821
vioscreen_nccglbr
91.33848459
vioscreen_nccglgr
63.8976295
vioscreen_niacin
24.004032000000002
vioscreen_niacineq
43.40495773
vioscreen_nitrogen
17.12865877
vioscreen_non_fried_fish_servings
5.34731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.497342212
vioscreen_oxalic
272.118857
vioscreen_oxalicm
263.58621580000005
vioscreen_pantothe
8.659617134
vioscreen_pectins
7.1844124570000005
vioscreen_pfa182
12.27394852
vioscreen_pfa183
1.642575282
vioscreen_pfa184
0.057589042
vioscreen_pfa204
0.38854792299999996
vioscreen_pfa205
0.22123291899999997
vioscreen_pfa225
0.09147945
vioscreen_pfa226
0.485589056
vioscreen_pfatot
15.38652344
vioscreen_phenylal
4.674438811
vioscreen_phosphor
1452.268836
vioscreen_phytic
407.4035103
vioscreen_pinitol
0.016219178
vioscreen_potass
3926.7366439999996
vioscreen_procdate
10/28/15
vioscreen_proline
5.1797808089999995
vioscreen_protanim
88.48273759
vioscreen_protein
106.9645869
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.47811029
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
399.0
vioscreen_retinol
1444.283733
vioscreen_rgrain
0.5735342370000001
vioscreen_ribofla
2.590355944
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.28937
vioscreen_satoco
0.0
vioscreen_selenium
142.09760269999998
vioscreen_serine
5.121259966
vioscreen_sfa100
0.229917803
vioscreen_sfa120
0.46764384200000003
vioscreen_sfa140
1.261862977
vioscreen_sfa160
14.14523224
vioscreen_sfa170
0.079150699
vioscreen_sfa180
5.254246708999999
vioscreen_sfa200
0.11369863
vioscreen_sfa220
0.067671251
vioscreen_sfa40
0.243780831
vioscreen_sfa60
0.118465758
vioscreen_sfa80
0.114931509
vioscreen_sfatot
22.30293103
vioscreen_sodium
3435.3037670000003
vioscreen_sorbitol
0.9455890809999999
vioscreen_srvid
18859.0
vioscreen_starch
16.49567102
vioscreen_started
6/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.38054902
vioscreen_sweet_servings
0.9754700000000001
vioscreen_tagatose
3.6155888810000003
vioscreen_tfa161t
0.040575341
vioscreen_tfa181t
1.3373424790000001
vioscreen_tfa182t
0.31542465
vioscreen_tgrain
0.5735342370000001
vioscreen_thiamin
1.056931504
vioscreen_threonin
4.474301691
vioscreen_time
17.0
vioscreen_totaltfa
1.702739559
vioscreen_totcla
0.069506846
vioscreen_totfolat
570.1307363
vioscreen_totsugar
93.44683219
vioscreen_tryptoph
1.1664110159999999
vioscreen_tyrosine
3.806794133
vioscreen_user_id
18859.0
vioscreen_v_drkgr
1.13909586
vioscreen_v_orange
0.26515068199999997
vioscreen_v_other
2.218986449
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.149561644
vioscreen_v_tomato
0.166027393
vioscreen_v_total
3.93879428
vioscreen_valine
5.729040695
vioscreen_veg5_day
10.7
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.8
vioscreen_visit
1.0
vioscreen_vita_iu
24642.75068
vioscreen_vita_rae
2435.767123
vioscreen_vita_re
3427.246575
vioscreen_vitb12
13.573809400000002
vioscreen_vitb6
2.523397367
vioscreen_vitc
220.14340750000002
vioscreen_vitd
11.9203018
vioscreen_vitd2
0.000438356
vioscreen_vitd3
11.91988977
vioscreen_vitd_iu
476.8120719
vioscreen_vite_iu
18.956742300000002
vioscreen_vitk
564.8049658
vioscreen_water
3799.1722600000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.00545
vioscreen_xylitol
0.059205492
vioscreen_zinc
12.33265598
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)