10317.000028704; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633626
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:30:00Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028704
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
31.0
age_corrected
31.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28704
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1984.0
bmi
24.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/04/2015
collection month
June
collection season
Summer
collection time
19:10
collection_timestamp
2015-06-04 19:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
791.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
524c73155323c3c22ebbd029bca7597b28be532132fb32987ab38de5d15d4786739dbb61a936b132ba21607027b5657e0a58d6847b7525cc471fd9f23d0f9f65
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
36.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-115.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028704
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NV
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
4ef927bcf8cfcaee
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.391452068
vioscreen_a_cal
48.40846533
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.3826028069999998
vioscreen_addsugar
6.13542447
vioscreen_adsugtot
5.980136986000001
vioscreen_age
215.0
vioscreen_alanine
2.200410859
vioscreen_alcohol
5.490082205
vioscreen_alcohol_servings
0.39145
vioscreen_alphacar
432.8077055
vioscreen_alphtoce
4.624739806
vioscreen_alphtoco
4.243041323
vioscreen_arginine
2.520054647
vioscreen_ash
10.05468349
vioscreen_aspartam
0.0
vioscreen_aspartic
3.831479425
vioscreen_avcarb
63.15745933
vioscreen_bcodeid
Not provided
vioscreen_betacar
2425.207363
vioscreen_betacryp
107.0856592
vioscreen_betaine
31.2662805
vioscreen_betatoco
0.101780837
vioscreen_biochana
0.010493151000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
10.12076734
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.23934
vioscreen_calcium_servings
0.9791799999999999
vioscreen_calories
802.5356164
vioscreen_carbo
72.37479131
vioscreen_cholest
208.6997217
vioscreen_choline
220.6056293
vioscreen_clac9t11
0.041643835
vioscreen_clat10c12
0.01090411
vioscreen_copper
0.725588947
vioscreen_coumest
0.09731507
vioscreen_cystine
0.552164407
vioscreen_d_cheese
0.209698633
vioscreen_d_milk
0.028520548
vioscreen_d_tot_soym
0.239342467
vioscreen_d_total
0.239342467
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.071205479
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.788685002
vioscreen_discfat_oil
8.828355763
vioscreen_discfat_sol
15.12704142
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00109589
vioscreen_f_citmlb
0.694027417
vioscreen_f_nj_citmlb
0.6927123190000001
vioscreen_f_nj_other
0.5361644170000001
vioscreen_f_nj_total
1.228876652
vioscreen_f_other
0.5361644170000001
vioscreen_f_total
1.230164327
vioscreen_fat
36.19734322
vioscreen_fiber
9.217974101
vioscreen_fibh2o
2.412794808
vioscreen_fibinso
6.79197279
vioscreen_finished
6/4/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
170.9845997
vioscreen_fol_nat
124.08135700000001
vioscreen_fol_syn
27.56882224
vioscreen_formontn
0.002246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.5
vioscreen_fructose
11.41526113
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.253369893
vioscreen_g_total
1.2751233240000002
vioscreen_g_whl
0.021753425
vioscreen_galactos
0.099095875
vioscreen_gammtoco
3.330931614
vioscreen_gender
false
vioscreen_genistn
0.084821921
vioscreen_glac
27.47271244
vioscreen_gltc
30.62531304
vioscreen_glucose
11.48786253
vioscreen_glutamic
6.9822205429999995
vioscreen_glycine
2.057698958
vioscreen_glycitn
0.014684931000000002
vioscreen_grams
3121.1636989999997
vioscreen_hei2010_dairy
2.3
vioscreen_hei2010_empty_calories
19.4
vioscreen_hei2010_fatty_acids
6.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.2
vioscreen_hei2010_sea_foods_plant_protiens
2.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.2
vioscreen_hei_drk_g_org_veg_leg
4.5
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.2
vioscreen_hei_sat_fat
5.1
vioscreen_hei_score
64.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.200383602
vioscreen_inositol
0.065342472
vioscreen_iron
4.842575115
vioscreen_isoleuc
1.945506809
vioscreen_isomalt
0.0
vioscreen_joules
3357.808904
vioscreen_juice_servings
0.00263
vioscreen_lactitol
0.0
vioscreen_lactose
0.439452038
vioscreen_legumes
0.044520548
vioscreen_leucine
3.104054741
vioscreen_line_gi
170.98908390000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2171.257534
vioscreen_lycopene
3338.460274
vioscreen_lysine
3.01153414
vioscreen_m_egg
0.613835625
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.054931505
vioscreen_m_meat
0.986164333
vioscreen_m_mpf
3.251013351
vioscreen_m_nutsd
0.31005479
vioscreen_m_organ
0.0
vioscreen_m_poult
2.209945219
vioscreen_m_soy
0.0017260270000000002
vioscreen_magnes
134.7087436
vioscreen_maltitol
0.0
vioscreen_maltose
0.720657558
vioscreen_mangan
1.13013707
vioscreen_mannitol
0.111643836
vioscreen_methhis3
12.86230067
vioscreen_methion
1.007479315
vioscreen_mfa141
0.051534245
vioscreen_mfa161
0.923671273
vioscreen_mfa181
14.60966931
vioscreen_mfa201
0.15909589
vioscreen_mfa221
0.0027397259999999996
vioscreen_mfatot
15.89583556
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
4.243041323
vioscreen_nccglbr
43.46293076
vioscreen_nccglgr
30.40435574
vioscreen_niacin
10.54610913
vioscreen_niacineq
17.98164196
vioscreen_nitrogen
6.703479506
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.547287698
vioscreen_oxalic
127.1695098
vioscreen_oxalicm
124.96714469999999
vioscreen_pantothe
2.223945346
vioscreen_pectins
1.986986469
vioscreen_pfa182
5.558219512999999
vioscreen_pfa183
0.48071238899999996
vioscreen_pfa184
0.000191781
vioscreen_pfa204
0.140575346
vioscreen_pfa205
0.010356164000000001
vioscreen_pfa225
0.017863014
vioscreen_pfa226
0.03860274
vioscreen_pfatot
6.310903387000001
vioscreen_phenylal
1.7427669159999999
vioscreen_phosphor
476.7200771000001
vioscreen_phytic
225.25402400000002
vioscreen_pinitol
0.001890411
vioscreen_potass
1259.119092
vioscreen_procdate
10/28/15
vioscreen_proline
2.222219305
vioscreen_protanim
32.59970034
vioscreen_protein
41.49706764
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
8.897260274
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
410.0
vioscreen_retinol
92.541128
vioscreen_rgrain
1.130876599
vioscreen_ribofla
0.655726059
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.58699
vioscreen_satoco
0.0
vioscreen_selenium
48.56572667
vioscreen_serine
1.7873973269999999
vioscreen_sfa100
0.077890417
vioscreen_sfa120
0.1
vioscreen_sfa140
0.605917818
vioscreen_sfa160
6.620547276
vioscreen_sfa170
0.04712329
vioscreen_sfa180
2.5768768730000002
vioscreen_sfa200
0.058356162
vioscreen_sfa220
0.062958903
vioscreen_sfa40
0.10084930800000001
vioscreen_sfa60
0.044520548
vioscreen_sfa80
0.032054797
vioscreen_sfatot
10.55811082
vioscreen_sodium
1647.524829
vioscreen_sorbitol
0.158493136
vioscreen_srvid
18831.0
vioscreen_starch
24.23202857
vioscreen_started
6/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
6.064328714
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.040054797
vioscreen_tfa161t
0.021013699
vioscreen_tfa181t
0.784054774
vioscreen_tfa182t
0.10438355699999999
vioscreen_tgrain
1.418273926
vioscreen_thiamin
0.46810954899999996
vioscreen_threonin
1.6490411630000001
vioscreen_time
17.0
vioscreen_totaltfa
0.9231507179999999
vioscreen_totcla
0.052301376
vioscreen_totfolat
151.65008559999998
vioscreen_totsugar
31.14018622
vioscreen_tryptoph
0.44619178200000004
vioscreen_tyrosine
1.37580834
vioscreen_user_id
18831.0
vioscreen_v_drkgr
0.17298629999999998
vioscreen_v_orange
0.069068491
vioscreen_v_other
0.513232924
vioscreen_v_potato
0.08030137400000001
vioscreen_v_starcy
0.065397257
vioscreen_v_tomato
0.138328761
vioscreen_v_total
1.0393972740000001
vioscreen_valine
2.056821891
vioscreen_veg5_day
1.6
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.1
vioscreen_visit
1.0
vioscreen_vita_iu
4800.567808
vioscreen_vita_rae
317.13728599999996
vioscreen_vita_re
541.7333047999999
vioscreen_vitb12
1.3842740830000002
vioscreen_vitb6
0.918657611
vioscreen_vitc
80.4127408
vioscreen_vitd
1.21293151
vioscreen_vitd2
0.002109589
vioscreen_vitd3
1.210849375
vioscreen_vitd_iu
48.51726041
vioscreen_vite_iu
6.332328901
vioscreen_vitk
98.50058861
vioscreen_water
2966.089041
vioscreen_weight
Not provided
vioscreen_wgrain
0.287397264
vioscreen_whole_grain_servings
0.02175
vioscreen_xylitol
0.029260277
vioscreen_zinc
4.962191647
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never