American Gut Project; 10317.000029314
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633685
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029314
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29314
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
28.65
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
Not provided
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-26
collection month
June
collection season
Summer
collection time
08:15
collection_timestamp
2015-06-26 08:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
96.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1ead8ae690e87fde5a5e6e321a20ac0a3e230afcbbe3eff192cb61f589cb4ed7d2731b5806148fd26369cfdc2fe2af73d87a42316c2ff9603a160a7298af38de
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.2
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-0.8
lowgrain_diet_type
false
lung disease
Not provided
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029314
sample type
Stool
seafood_frequency
Not provided
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
f4627de1c3dce1aa
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.386657548
vioscreen_a_cal
293.49627569999996
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.581260368
vioscreen_addsugar
18.1459185
vioscreen_adsugtot
16.09175407
vioscreen_age
215.0
vioscreen_alanine
2.8574255539999998
vioscreen_alcohol
36.69925888
vioscreen_alcohol_servings
2.38666
vioscreen_alphacar
1331.414897
vioscreen_alphtoce
9.945206147999999
vioscreen_alphtoco
8.647398732000001
vioscreen_arginine
3.26008167
vioscreen_ash
14.95728944
vioscreen_aspartam
0.0
vioscreen_aspartic
5.337343482
vioscreen_avcarb
117.3735338
vioscreen_bcodeid
Not provided
vioscreen_betacar
7280.717123
vioscreen_betacryp
60.40976027
vioscreen_betaine
125.45068490000001
vioscreen_betatoco
0.316356147
vioscreen_biochana
0.0049315059999999996
vioscreen_bmi
Not provided
vioscreen_caffeine
117.1051798
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.37521
vioscreen_calcium_servings
1.57449
vioscreen_calories
1595.653596
vioscreen_carbo
133.3161922
vioscreen_cholest
289.6422945
vioscreen_choline
347.2400043
vioscreen_clac9t11
0.056273965
vioscreen_clat10c12
0.014794522
vioscreen_copper
0.9674518740000001
vioscreen_coumest
0.071452055
vioscreen_cystine
0.8195616840000001
vioscreen_d_cheese
0.274794508
vioscreen_d_milk
0.100410963
vioscreen_d_tot_soym
0.375205471
vioscreen_d_total
0.375205471
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.646575342
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.7736440160000004
vioscreen_discfat_oil
32.81854934
vioscreen_discfat_sol
18.599093
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000109589
vioscreen_f_citmlb
0.084465758
vioscreen_f_nj_citmlb
0.082438362
vioscreen_f_nj_other
0.102054795
vioscreen_f_nj_total
0.18452054399999998
vioscreen_f_other
0.104356165
vioscreen_f_total
0.188849295
vioscreen_fat
65.70890946
vioscreen_fiber
15.94328714
vioscreen_fibh2o
4.967232649
vioscreen_fibinso
10.97775244
vioscreen_finished
6/25/15
vioscreen_fish_servings
0.8257700000000001
vioscreen_fol_deqv
317.9876284
vioscreen_fol_nat
200.9031678
vioscreen_fol_syn
68.8630137
vioscreen_formontn
0.000767123
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.4
vioscreen_fructose
7.473370612
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
3.158411146
vioscreen_g_total
4.281835269
vioscreen_g_whl
1.123424624
vioscreen_galactos
0.134410963
vioscreen_gammtoco
11.4443841
vioscreen_gender
false
vioscreen_genistn
0.6057807820000001
vioscreen_glac
57.10273973
vioscreen_gltc
63.23311751
vioscreen_glucose
8.314957459
vioscreen_glutamic
10.67268434
vioscreen_glycine
2.5210686669999998
vioscreen_glycitn
0.302876742
vioscreen_grams
2591.925342
vioscreen_hei2010_dairy
1.8
vioscreen_hei2010_empty_calories
17.1
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.3
vioscreen_hei2010_score
68.2
vioscreen_hei2010_sea_foods_plant_protiens
3.4
vioscreen_hei2010_sodium
4.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.4
vioscreen_hei2010_whole_grains
4.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.8
vioscreen_hei_non_juice_frt
1.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.4
vioscreen_hei_score
64.5
vioscreen_hei_sodium
3.8
vioscreen_hei_sol_fat_alc_add_sug
11.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
1.55246582
vioscreen_inositol
0.200438366
vioscreen_iron
10.66293343
vioscreen_isoleuc
2.558876686
vioscreen_isomalt
0.0
vioscreen_joules
6676.211644
vioscreen_juice_servings
0.00868
vioscreen_lactitol
0.0
vioscreen_lactose
1.493424591
vioscreen_legumes
0.09484931199999999
vioscreen_leucine
4.267232648999999
vioscreen_line_gi
276.2148759
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2931.684589
vioscreen_lycopene
5927.073973
vioscreen_lysine
3.8107669360000003
vioscreen_m_egg
1.014301373
vioscreen_m_fish_hi
0.277479449
vioscreen_m_fish_lo
0.19301369
vioscreen_m_frank
0.24290409899999998
vioscreen_m_meat
1.612520735
vioscreen_m_mpf
3.455999505
vioscreen_m_nutsd
0.38241096399999996
vioscreen_m_organ
0.0
vioscreen_m_poult
1.1301095620000001
vioscreen_m_soy
0.005479451999999999
vioscreen_magnes
237.02026969999997
vioscreen_maltitol
0.0
vioscreen_maltose
3.292438329
vioscreen_mangan
2.969451653
vioscreen_mannitol
0.29257532399999997
vioscreen_methhis3
13.69287645
vioscreen_methion
1.309068654
vioscreen_mfa141
0.063808216
vioscreen_mfa161
0.9416438690000001
vioscreen_mfa181
25.36868044
vioscreen_mfa201
0.257808236
vioscreen_mfa221
0.049150676
vioscreen_mfatot
26.85966663
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.647398732000001
vioscreen_nccglbr
101.8006742
vioscreen_nccglgr
71.21490261
vioscreen_niacin
16.65246415
vioscreen_niacineq
27.291149400000002
vioscreen_nitrogen
9.515835697
vioscreen_non_fried_fish_servings
0.8257700000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.67189005
vioscreen_oxalic
185.39467040000002
vioscreen_oxalicm
158.14704619999998
vioscreen_pantothe
4.171342907
vioscreen_pectins
2.247643374
vioscreen_pfa182
14.72375455
vioscreen_pfa183
1.494602318
vioscreen_pfa184
0.010054794
vioscreen_pfa204
0.151534261
vioscreen_pfa205
0.039479452000000005
vioscreen_pfa225
0.024410957999999996
vioscreen_pfa226
0.10389040599999999
vioscreen_pfatot
16.60359188
vioscreen_phenylal
2.466930985
vioscreen_phosphor
853.9327055
vioscreen_phytic
428.73125
vioscreen_pinitol
0.007835616
vioscreen_potass
2367.292123
vioscreen_procdate
10/28/15
vioscreen_proline
3.195698443
vioscreen_protanim
37.94367241
vioscreen_protein
58.58753746
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.64504094
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
364.0
vioscreen_retinol
193.7512414
vioscreen_rgrain
2.9689871169999997
vioscreen_ribofla
1.314246525
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.20016
vioscreen_satoco
0.0
vioscreen_selenium
89.15909675
vioscreen_serine
2.588684584
vioscreen_sfa100
0.132109592
vioscreen_sfa120
0.156438362
vioscreen_sfa140
0.8406300999999999
vioscreen_sfa160
10.235726800000002
vioscreen_sfa170
0.063013699
vioscreen_sfa180
4.619122231
vioscreen_sfa200
0.14731507
vioscreen_sfa220
0.116328744
vioscreen_sfa40
0.17175341
vioscreen_sfa60
0.066465754
vioscreen_sfa80
0.054438352999999995
vioscreen_sfatot
16.76536681
vioscreen_sodium
2507.483562
vioscreen_sorbitol
0.082493147
vioscreen_srvid
19971.0
vioscreen_starch
64.18696489999999
vioscreen_started
6/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.61188865
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.48709583
vioscreen_tfa161t
0.027835616
vioscreen_tfa181t
2.014082734
vioscreen_tfa182t
0.43783561
vioscreen_tgrain
4.255836298999999
vioscreen_thiamin
1.1168220420000001
vioscreen_threonin
2.274657534
vioscreen_time
34.0
vioscreen_totaltfa
2.53783561
vioscreen_totcla
0.071342458
vioscreen_totfolat
269.7661815
vioscreen_totsugar
34.01761558
vioscreen_tryptoph
0.638958907
vioscreen_tyrosine
1.904027317
vioscreen_user_id
19971.0
vioscreen_v_drkgr
0.30572603800000003
vioscreen_v_orange
0.382109634
vioscreen_v_other
0.647095897
vioscreen_v_potato
0.53323289
vioscreen_v_starcy
0.033698631
vioscreen_v_tomato
0.673342436
vioscreen_v_total
2.575287952
vioscreen_valine
2.8264932710000004
vioscreen_veg5_day
3.5
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
5.1
vioscreen_visit
1.0
vioscreen_vita_iu
13940.72329
vioscreen_vita_rae
858.4702911
vioscreen_vita_re
1523.1907529999999
vioscreen_vitb12
2.5406846969999997
vioscreen_vitb6
1.497808085
vioscreen_vitc
70.34414598
vioscreen_vitd
3.112904337
vioscreen_vitd2
0.079178081
vioscreen_vitd3
3.03380846
vioscreen_vitd_iu
124.51617350000001
vioscreen_vite_iu
12.89608171
vioscreen_vitk
168.8428189
vioscreen_water
2302.335616
vioscreen_weight
Not provided
vioscreen_wgrain
1.286876773
vioscreen_whole_grain_servings
1.12342
vioscreen_xylitol
0.042328769
vioscreen_zinc
7.811425112
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
78.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)