American Gut Project; 10317.000029458
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633722
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029458
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29458
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1943.0
bmi
26.23
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-28
collection month
June
collection season
Summer
collection time
07:30
collection_timestamp
2015-06-28 07:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
56.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
77dec5eb7f36a0d7998894fbcdd4c7ec8b2992dc31c0be7ec50185cdd2437030893c3e25603ebf62b2731aebdf2d4f141ea3f78cef51dd4a3b58cca94c4f9ba7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029458
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
6957529800ea203f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.8687392979999995
vioscreen_addsugar
34.56084653
vioscreen_adsugtot
29.73937018
vioscreen_age
215.0
vioscreen_alanine
4.5739726030000005
vioscreen_alcohol
0.0016712329999999998
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
2524.4121579999996
vioscreen_alphtoce
8.580273437999999
vioscreen_alphtoco
7.668327937999999
vioscreen_arginine
5.009507438
vioscreen_ash
24.78350813
vioscreen_aspartam
0.0
vioscreen_aspartic
8.386355549
vioscreen_avcarb
200.5953553
vioscreen_bcodeid
Not provided
vioscreen_betacar
8281.99863
vioscreen_betacryp
223.5362372
vioscreen_betaine
366.68732880000005
vioscreen_betatoco
0.319452009
vioscreen_biochana
0.012547945
vioscreen_bmi
Not provided
vioscreen_caffeine
330.8482877
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
2.23827
vioscreen_calcium_servings
4.02096
vioscreen_calories
1898.7047949999999
vioscreen_carbo
232.7853596
vioscreen_cholest
243.47651969999998
vioscreen_choline
419.3210188
vioscreen_clac9t11
0.154739735
vioscreen_clat10c12
0.032301372
vioscreen_copper
1.6722738190000002
vioscreen_coumest
0.052575344
vioscreen_cystine
1.213424724
vioscreen_d_cheese
0.268301371
vioscreen_d_milk
1.715123341
vioscreen_d_tot_soym
2.238273892
vioscreen_d_total
2.238273892
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.23608222899999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.825479419
vioscreen_discfat_oil
13.17071249
vioscreen_discfat_sol
36.57781732
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
0.72260274
vioscreen_f_nj_citmlb
0.717726031
vioscreen_f_nj_other
1.161862977
vioscreen_f_nj_total
1.8795890080000002
vioscreen_f_other
1.161862977
vioscreen_f_total
1.884465633
vioscreen_fat
66.79791845
vioscreen_fiber
32.19322828
vioscreen_fibh2o
8.524574592999999
vioscreen_fibinso
23.82093322
vioscreen_finished
6/27/15
vioscreen_fish_servings
3.20654
vioscreen_fol_deqv
403.1433647
vioscreen_fol_nat
344.384482
vioscreen_fol_syn
34.50602526
vioscreen_formontn
0.005150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.8
vioscreen_fructose
19.65528815
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.0107124219999997
vioscreen_g_total
7.897507759
vioscreen_g_whl
5.886795002
vioscreen_galactos
0.444575354
vioscreen_gammtoco
7.660603061000001
vioscreen_gender
false
vioscreen_genistn
0.309150675
vioscreen_glac
93.19767765
vioscreen_gltc
107.151905
vioscreen_glucose
15.86959011
vioscreen_glutamic
18.06011077
vioscreen_glycine
4.006877074
vioscreen_glycitn
0.058164377
vioscreen_grams
3995.1383560000004
vioscreen_hei2010_dairy
9.1
vioscreen_hei2010_empty_calories
17.2
vioscreen_hei2010_fatty_acids
1.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.8
vioscreen_hei_sat_fat
5.2
vioscreen_hei_score
77.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.635287685
vioscreen_inositol
0.073534247
vioscreen_iron
13.03578232
vioscreen_isoleuc
4.31950717
vioscreen_isomalt
0.0
vioscreen_joules
7944.181506999999
vioscreen_juice_servings
0.009729999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
25.39293129
vioscreen_legumes
0.145671228
vioscreen_leucine
7.329478141
vioscreen_line_gi
502.0684932
vioscreen_low_fat_dairy_serving
1.62019
vioscreen_lutzeax
6077.6130140000005
vioscreen_lycopene
3815.744178
vioscreen_lysine
6.828000589
vioscreen_m_egg
0.221232877
vioscreen_m_fish_hi
0.922191798
vioscreen_m_fish_lo
0.90506851
vioscreen_m_frank
1.11923293
vioscreen_m_meat
1.750822052
vioscreen_m_mpf
6.204164437
vioscreen_m_nutsd
0.01030137
vioscreen_m_organ
0.0
vioscreen_m_poult
1.5069041630000002
vioscreen_m_soy
0.0038356159999999996
vioscreen_magnes
483.45924660000003
vioscreen_maltitol
0.0
vioscreen_maltose
4.879781477
vioscreen_mangan
7.671069001
vioscreen_mannitol
0.761534223
vioscreen_methhis3
21.35383535
vioscreen_methion
2.217835643
vioscreen_mfa141
0.138301369
vioscreen_mfa161
1.349644073
vioscreen_mfa181
21.76603034
vioscreen_mfa201
0.305835588
vioscreen_mfa221
0.122301379
vioscreen_mfatot
23.84115208
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.668327937999999
vioscreen_nccglbr
153.1907855
vioscreen_nccglgr
107.140732
vioscreen_niacin
26.57471372
vioscreen_niacineq
44.56003318
vioscreen_nitrogen
16.49473994
vioscreen_non_fried_fish_servings
3.20654
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.870000134
vioscreen_oxalic
335.5663313
vioscreen_oxalicm
321.7635274
vioscreen_pantothe
6.192684477
vioscreen_pectins
4.816164785
vioscreen_pfa182
9.853260782000001
vioscreen_pfa183
1.415890545
vioscreen_pfa184
0.030410957000000002
vioscreen_pfa204
0.127315061
vioscreen_pfa205
0.11443835699999999
vioscreen_pfa225
0.054794521
vioscreen_pfa226
0.255643829
vioscreen_pfatot
11.95021939
vioscreen_phenylal
4.127342747
vioscreen_phosphor
1666.399486
vioscreen_phytic
1025.9958900000001
vioscreen_pinitol
0.0024657529999999998
vioscreen_potass
3852.878767
vioscreen_procdate
10/28/15
vioscreen_proline
5.887837115
vioscreen_protanim
65.20959439
vioscreen_protein
101.4778896
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
36.26422036
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
354.0
vioscreen_retinol
400.8107877
vioscreen_rgrain
2.466410932
vioscreen_ribofla
2.3037534109999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.72353
vioscreen_satoco
0.0
vioscreen_selenium
160.3581657
vioscreen_serine
4.316657079
vioscreen_sfa100
0.605369881
vioscreen_sfa120
0.978767123
vioscreen_sfa140
2.414931875
vioscreen_sfa160
13.2536173
vioscreen_sfa170
0.145835615
vioscreen_sfa180
5.609835188
vioscreen_sfa200
0.10652054
vioscreen_sfa220
0.057369864000000007
vioscreen_sfa40
0.632575341
vioscreen_sfa60
0.389863022
vioscreen_sfa80
0.312904128
vioscreen_sfatot
24.82029912
vioscreen_sodium
4165.619178
vioscreen_sorbitol
0.9041369290000001
vioscreen_srvid
19996.0
vioscreen_starch
87.85075450000001
vioscreen_started
6/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
33.41090539
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
2.408849262
vioscreen_tfa161t
0.053671233
vioscreen_tfa181t
1.9922192719999998
vioscreen_tfa182t
0.34567127
vioscreen_tgrain
7.646521162999999
vioscreen_thiamin
1.605369756
vioscreen_threonin
3.7555339660000002
vioscreen_time
24.0
vioscreen_totaltfa
2.6868219239999998
vioscreen_totcla
0.186849265
vioscreen_totfolat
378.89053939999997
vioscreen_totsugar
100.7768301
vioscreen_tryptoph
1.079780809
vioscreen_tyrosine
3.30336981
vioscreen_user_id
19996.0
vioscreen_v_drkgr
0.627397302
vioscreen_v_orange
0.43339726700000003
vioscreen_v_other
0.5671506279999999
vioscreen_v_potato
0.073150687
vioscreen_v_starcy
0.304054783
vioscreen_v_tomato
0.31698629300000003
vioscreen_v_total
2.322054928
vioscreen_valine
4.965013645
vioscreen_veg5_day
3.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
17426.05616
vioscreen_vita_rae
1205.476027
vioscreen_vita_re
2010.1417809999998
vioscreen_vitb12
5.548355897
vioscreen_vitb6
2.011890652
vioscreen_vitc
140.8261558
vioscreen_vitd
11.13654819
vioscreen_vitd2
0.000219178
vioscreen_vitd3
11.13632879
vioscreen_vitd_iu
445.46192740000004
vioscreen_vite_iu
11.41498689
vioscreen_vitk
249.0908176
vioscreen_water
3592.355822
vioscreen_weight
Not provided
vioscreen_wgrain
5.180109562
vioscreen_whole_grain_servings
5.8868
vioscreen_xylitol
0.019726023999999998
vioscreen_zinc
13.831724900000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
85.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)