10317.000022188; American Gut Project
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633009
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:27:12Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022188
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22188
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
26.08
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-27
collection month
January
collection season
Winter
collection time
11:15
collection_timestamp
2015-01-27 11:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
Australia
country of birth
Australia
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
71.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
83129c2b229f0d9fb6e870c62c2b01797d6f2d1e18875a4474c1d621fd4239f0509c12f293d0febfee93496a315d1b8ed8f7d66b9046ea392b2913819b93632c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
-33.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
151.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022188
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NSW
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
f5490a31d427de8a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.29430116
vioscreen_addsugar
50.23542379999999
vioscreen_adsugtot
46.75021404
vioscreen_age
215.0
vioscreen_alanine
2.969479412
vioscreen_alcohol
0.000520548
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
453.4151113
vioscreen_alphtoce
12.269618199999998
vioscreen_alphtoco
10.59528775
vioscreen_arginine
3.633616492
vioscreen_ash
18.05372565
vioscreen_aspartam
0.0
vioscreen_aspartic
6.722137200000001
vioscreen_avcarb
208.12947350000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
1979.2101030000001
vioscreen_betacryp
113.8789598
vioscreen_betaine
62.77453981
vioscreen_betatoco
0.41200001299999994
vioscreen_biochana
0.015643836
vioscreen_bmi
Not provided
vioscreen_caffeine
356.256143
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.09836
vioscreen_calcium_servings
4.688680000000001
vioscreen_calories
1829.1366440000002
vioscreen_carbo
231.7747003
vioscreen_cholest
138.77067639999999
vioscreen_choline
256.0511558
vioscreen_clac9t11
0.07068492900000001
vioscreen_clat10c12
0.012712328
vioscreen_copper
1.261068433
vioscreen_coumest
0.299506869
vioscreen_cystine
0.836246522
vioscreen_d_cheese
0.959616465
vioscreen_d_milk
0.636849349
vioscreen_d_tot_soym
3.0983562310000003
vioscreen_d_total
3.0983562310000003
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
2.394164537
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.150767204
vioscreen_discfat_oil
33.53616492
vioscreen_discfat_sol
28.81788849
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002136986
vioscreen_f_citmlb
0.52221918
vioscreen_f_nj_citmlb
0.517643842
vioscreen_f_nj_other
2.483041256
vioscreen_f_nj_total
3.000685266
vioscreen_f_other
2.483041256
vioscreen_f_total
3.0052607289999997
vioscreen_fat
76.56422303
vioscreen_fiber
23.61624304
vioscreen_fibh2o
8.427890224
vioscreen_fibinso
15.23120719
vioscreen_finished
1/24/15
vioscreen_fish_servings
1.3865399999999999
vioscreen_fol_deqv
315.1809932
vioscreen_fol_nat
231.8439426
vioscreen_fol_syn
49.03424658
vioscreen_formontn
0.0062191780000000006
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.0
vioscreen_fructose
25.1809771
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.8412602669999998
vioscreen_g_total
4.140575837
vioscreen_g_whl
2.2993150680000003
vioscreen_galactos
2.082411006
vioscreen_gammtoco
9.710738843
vioscreen_gender
false
vioscreen_genistn
2.7485483669999997
vioscreen_glac
94.6109589
vioscreen_gltc
104.12602740000001
vioscreen_glucose
21.40539651
vioscreen_glutamic
14.73854746
vioscreen_glycine
2.434027518
vioscreen_glycitn
0.388876719
vioscreen_grams
3316.427055
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
16.4
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
0.9
vioscreen_hei2010_protien_foods
4.3
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
9.1
vioscreen_hei2010_veg
2.4
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.4
vioscreen_hei_drk_g_org_veg_leg
0.9
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
8.5
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.7
vioscreen_hei_score
78.8
vioscreen_hei_sodium
7.3
vioscreen_hei_sol_fat_alc_add_sug
17.0
vioscreen_hei_veg
2.4
vioscreen_hei_whl_grains
4.2
vioscreen_height
Not provided
vioscreen_histidin
1.907123388
vioscreen_inositol
0.07427398
vioscreen_iron
8.90405541
vioscreen_isoleuc
3.3007946280000002
vioscreen_isomalt
0.0
vioscreen_joules
7653.104109999999
vioscreen_juice_servings
0.00915
vioscreen_lactitol
0.0
vioscreen_lactose
30.72490636
vioscreen_legumes
0.0
vioscreen_leucine
5.970493766000001
vioscreen_line_gi
479.6402397
vioscreen_low_fat_dairy_serving
1.52011
vioscreen_lutzeax
1262.059161
vioscreen_lycopene
1303.33339
vioscreen_lysine
4.911233144
vioscreen_m_egg
0.18994521
vioscreen_m_fish_hi
0.197589049
vioscreen_m_fish_lo
0.592767125
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
0.36123285200000005
vioscreen_m_mpf
1.253232857
vioscreen_m_nutsd
2.221917808
vioscreen_m_organ
0.0
vioscreen_m_poult
0.09271232900000001
vioscreen_m_soy
0.226438339
vioscreen_magnes
362.28848460000006
vioscreen_maltitol
0.0
vioscreen_maltose
2.107233251
vioscreen_mangan
5.112356191
vioscreen_mannitol
0.603726071
vioscreen_methhis3
1.8690685530000002
vioscreen_methion
1.643643816
vioscreen_mfa141
0.12019177800000001
vioscreen_mfa161
0.8671232879999999
vioscreen_mfa181
30.03361515
vioscreen_mfa201
0.30065754899999997
vioscreen_mfa221
0.009534247
vioscreen_mfatot
31.58789598
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.17292982
vioscreen_nccglbr
134.301616
vioscreen_nccglgr
93.93223459
vioscreen_niacin
16.45805463
vioscreen_niacineq
28.45717573
vioscreen_nitrogen
11.4095061
vioscreen_non_fried_fish_servings
1.3865399999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.2267946840000001
vioscreen_oxalic
184.57624140000001
vioscreen_oxalicm
209.5621147
vioscreen_pantothe
6.571753264
vioscreen_pectins
3.47742435
vioscreen_pfa182
13.78322988
vioscreen_pfa183
1.148000137
vioscreen_pfa184
0.004739726
vioscreen_pfa204
0.045260275
vioscreen_pfa205
0.014054795
vioscreen_pfa225
0.007095891
vioscreen_pfa226
0.05306849
vioscreen_pfatot
15.10326011
vioscreen_phenylal
3.47958884
vioscreen_phosphor
1514.292637
vioscreen_phytic
868.6174658
vioscreen_pinitol
0.014191782
vioscreen_potass
3252.6089039999997
vioscreen_procdate
10/28/15
vioscreen_proline
5.862300674
vioscreen_protanim
43.86677012
vioscreen_protein
69.91334546
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.02002622
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
594.0
vioscreen_retinol
301.98518839999997
vioscreen_rgrain
1.820547945
vioscreen_ribofla
2.2891778819999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.69581
vioscreen_satoco
0.93860273
vioscreen_selenium
114.9553831
vioscreen_serine
3.866082178
vioscreen_sfa100
0.571808196
vioscreen_sfa120
0.742219272
vioscreen_sfa140
2.493780768
vioscreen_sfa160
13.08739566
vioscreen_sfa170
0.094684925
vioscreen_sfa180
4.888794614
vioscreen_sfa200
0.268575381
vioscreen_sfa220
0.388821955
vioscreen_sfa40
0.703753411
vioscreen_sfa60
0.368246585
vioscreen_sfa80
0.251726041
vioscreen_sfatot
24.49249251
vioscreen_sodium
2164.085959
vioscreen_sorbitol
1.663698797
vioscreen_srvid
16976.0
vioscreen_starch
63.98580372
vioscreen_started
1/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
50.21010809
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
11.48512414
vioscreen_tfa161t
0.060191784000000005
vioscreen_tfa181t
0.737287715
vioscreen_tfa182t
0.252054795
vioscreen_tgrain
4.303397234
vioscreen_thiamin
1.173150635
vioscreen_threonin
2.6467945669999997
vioscreen_time
17.0
vioscreen_totaltfa
1.0493698329999999
vioscreen_totcla
0.083397262
vioscreen_totfolat
280.8780608
vioscreen_totsugar
133.6589362
vioscreen_tryptoph
0.720383652
vioscreen_tyrosine
2.8656166389999997
vioscreen_user_id
16976.0
vioscreen_v_drkgr
0.064465755
vioscreen_v_orange
0.066493152
vioscreen_v_other
0.37852055799999995
vioscreen_v_potato
0.18673973600000002
vioscreen_v_starcy
0.074931503
vioscreen_v_tomato
0.19484932300000002
vioscreen_v_total
0.96599999
vioscreen_valine
4.2622190710000005
vioscreen_veg5_day
1.3
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.9
vioscreen_visit
1.0
vioscreen_vita_iu
4776.196233
vioscreen_vita_rae
490.55642120000005
vioscreen_vita_re
679.1280393999999
vioscreen_vitb12
4.369287778
vioscreen_vitb6
1.4051232740000001
vioscreen_vitc
70.59562821
vioscreen_vitd
5.220712488999999
vioscreen_vitd2
0.053945207
vioscreen_vitd3
5.166794199
vioscreen_vitd_iu
208.82849960000001
vioscreen_vite_iu
16.07989218
vioscreen_vitk
96.10224743
vioscreen_water
2932.263014
vioscreen_weight
Not provided
vioscreen_wgrain
2.482821864
vioscreen_whole_grain_servings
2.2993200000000003
vioscreen_xylitol
0.042739727000000005
vioscreen_zinc
10.53462984
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
71.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily