10317.000027912; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633919
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027912
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27912
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
28.48
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
11:00
collection_timestamp
2015-07-27 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
99.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
80723767f75396e292c1849d14986255857df17fbbd41c11307930c8d7dcc4a2cf6b9ae34b324213c84eea8fdeb38d26c315e67a1d94c3148e6806d975467b33
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
47.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027912
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
7dbef84818b32229
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.065150687
vioscreen_a_cal
9.725452162
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.765396912
vioscreen_addsugar
18.35881983
vioscreen_adsugtot
15.47997244
vioscreen_age
215.0
vioscreen_alanine
3.985205413
vioscreen_alcohol
0.926219198
vioscreen_alcohol_servings
0.06515
vioscreen_alphacar
357.31675939999997
vioscreen_alphtoce
8.828301584
vioscreen_alphtoco
7.745315176
vioscreen_arginine
4.501836406000001
vioscreen_ash
19.14139822
vioscreen_aspartam
69.57230308
vioscreen_aspartic
7.194408845
vioscreen_avcarb
134.65591819999997
vioscreen_bcodeid
Not provided
vioscreen_betacar
2629.17637
vioscreen_betacryp
43.02529431
vioscreen_betaine
102.853414
vioscreen_betatoco
0.306986331
vioscreen_biochana
0.0067945209999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
398.59276539999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.1237
vioscreen_calcium_servings
2.56068
vioscreen_calories
1523.357877
vioscreen_carbo
154.9533711
vioscreen_cholest
291.1640197
vioscreen_choline
371.83270550000003
vioscreen_clac9t11
0.11372601199999999
vioscreen_clat10c12
0.02569863
vioscreen_copper
1.036904029
vioscreen_coumest
0.266328765
vioscreen_cystine
0.9685204909999999
vioscreen_d_cheese
0.454411002
vioscreen_d_milk
0.666411016
vioscreen_d_tot_soym
1.123698697
vioscreen_d_total
1.123698697
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.558082225
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.8698083330000002
vioscreen_discfat_oil
17.42424952
vioscreen_discfat_sol
34.27320741
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007123289999999999
vioscreen_f_citmlb
0.113863017
vioscreen_f_nj_citmlb
0.107260268
vioscreen_f_nj_other
0.649561676
vioscreen_f_nj_total
0.7568492309999999
vioscreen_f_other
0.649561676
vioscreen_f_total
0.763451898
vioscreen_fat
69.36186323
vioscreen_fiber
20.26454944
vioscreen_fibh2o
8.323342519
vioscreen_fibinso
11.882823199999999
vioscreen_finished
7/25/15
vioscreen_fish_servings
3.1490400000000003
vioscreen_fol_deqv
663.4077055
vioscreen_fol_nat
201.0035745
vioscreen_fol_syn
271.9294307
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.18995
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.5
vioscreen_fructose
10.24159086
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.1822469630000003
vioscreen_g_total
4.722767284
vioscreen_g_whl
1.540465807
vioscreen_galactos
0.142794518
vioscreen_gammtoco
9.347123822999999
vioscreen_gender
false
vioscreen_genistn
0.566958869
vioscreen_glac
71.09524294
vioscreen_gltc
78.47916845
vioscreen_glucose
9.901288929
vioscreen_glutamic
14.62416256
vioscreen_glycine
3.6705757039999996
vioscreen_glycitn
0.067452057
vioscreen_grams
3101.934589
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
16.5
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
3.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.8
vioscreen_hei2010_score
69.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.7
vioscreen_hei_drk_g_org_veg_leg
4.1
vioscreen_hei_fruit
3.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.5
vioscreen_hei_sat_fat
1.6
vioscreen_hei_score
69.1
vioscreen_hei_sodium
0.1
vioscreen_hei_sol_fat_alc_add_sug
16.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
2.2182461669999998
vioscreen_inositol
0.01967123
vioscreen_iron
18.97345088
vioscreen_isoleuc
3.4616705910000003
vioscreen_isomalt
0.0
vioscreen_joules
6373.731507
vioscreen_juice_servings
0.01323
vioscreen_lactitol
0.0
vioscreen_lactose
8.943589468999999
vioscreen_legumes
0.124767115
vioscreen_leucine
6.11895869
vioscreen_line_gi
333.53531680000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2021.871404
vioscreen_lycopene
6539.654795
vioscreen_lysine
5.399205707
vioscreen_m_egg
0.6188219460000001
vioscreen_m_fish_hi
1.368630187
vioscreen_m_fish_lo
0.43208221
vioscreen_m_frank
0.40701369200000004
vioscreen_m_meat
2.38550691
vioscreen_m_mpf
5.21720556
vioscreen_m_nutsd
1.10276715
vioscreen_m_organ
0.0
vioscreen_m_poult
0.623972603
vioscreen_m_soy
0.014410958
vioscreen_magnes
291.0739084
vioscreen_maltitol
0.0
vioscreen_maltose
1.94367124
vioscreen_mangan
3.611616412
vioscreen_mannitol
0.299671225
vioscreen_methhis3
20.21701493
vioscreen_methion
1.81734268
vioscreen_mfa141
0.134602732
vioscreen_mfa161
1.223479472
vioscreen_mfa181
23.91010809
vioscreen_mfa201
0.447753446
vioscreen_mfa221
0.242767125
vioscreen_mfatot
26.222771299999998
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.738492616
vioscreen_nccglbr
111.3727098
vioscreen_nccglgr
77.92327162
vioscreen_niacin
24.58410745
vioscreen_niacineq
38.34172196
vioscreen_nitrogen
12.83462917
vioscreen_non_fried_fish_servings
3.1490400000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7351786569999998
vioscreen_oxalic
166.53222390000002
vioscreen_oxalicm
174.7872753
vioscreen_pantothe
6.306712864
vioscreen_pectins
2.26268461
vioscreen_pfa182
11.27495853
vioscreen_pfa183
1.030767404
vioscreen_pfa184
0.05523287599999999
vioscreen_pfa204
0.143205481
vioscreen_pfa205
0.188630112
vioscreen_pfa225
0.079835615
vioscreen_pfa226
0.381479425
vioscreen_pfatot
13.26213881
vioscreen_phenylal
3.428657762
vioscreen_phosphor
1217.9235449999999
vioscreen_phytic
627.4732021000001
vioscreen_pinitol
0.003150685
vioscreen_potass
2700.098459
vioscreen_procdate
10/28/15
vioscreen_proline
4.668356698999999
vioscreen_protanim
55.14290454
vioscreen_protein
78.97183754
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.83048748
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
265.0
vioscreen_retinol
457.44332189999994
vioscreen_rgrain
3.6133153630000003
vioscreen_ribofla
2.426054821
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.0609899999999999
vioscreen_satoco
0.014931506
vioscreen_selenium
112.41012409999999
vioscreen_serine
3.595671688
vioscreen_sfa100
0.464630127
vioscreen_sfa120
0.565452011
vioscreen_sfa140
2.182958817
vioscreen_sfa160
12.82646618
vioscreen_sfa170
0.174164383
vioscreen_sfa180
5.579452723999999
vioscreen_sfa200
0.15747944
vioscreen_sfa220
0.202931527
vioscreen_sfa40
0.5899178279999999
vioscreen_sfa60
0.32019178800000003
vioscreen_sfa80
0.205095871
vioscreen_sfatot
23.65873823
vioscreen_sodium
3037.993493
vioscreen_sorbitol
0.321506803
vioscreen_srvid
20229.0
vioscreen_starch
78.22619863
vioscreen_started
7/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.34871174
vioscreen_sweet_servings
0.41458999999999996
vioscreen_tagatose
0.325150686
vioscreen_tfa161t
0.048767121
vioscreen_tfa181t
1.968246502
vioscreen_tfa182t
0.281041101
vioscreen_tgrain
5.489069188999999
vioscreen_thiamin
1.5368493490000001
vioscreen_threonin
3.035451894
vioscreen_time
29.0
vioscreen_totaltfa
2.325780748
vioscreen_totcla
0.140191776
vioscreen_totfolat
472.9328767
vioscreen_totsugar
45.55958904
vioscreen_tryptoph
0.825205429
vioscreen_tyrosine
2.652465319
vioscreen_user_id
20229.0
vioscreen_v_drkgr
0.310849333
vioscreen_v_orange
0.064931509
vioscreen_v_other
0.566520545
vioscreen_v_potato
0.233726021
vioscreen_v_starcy
0.045945207
vioscreen_v_tomato
0.334082198
vioscreen_v_total
1.556027431
vioscreen_valine
3.955123274
vioscreen_veg5_day
1.8
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
3.1
vioscreen_visit
1.0
vioscreen_vita_iu
6240.223973
vioscreen_vita_rae
693.2228167999999
vioscreen_vita_re
929.0017979
vioscreen_vitb12
6.76813597
vioscreen_vitb6
2.026356318
vioscreen_vitc
47.77435253
vioscreen_vitd
10.7432062
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
10.74246642
vioscreen_vitd_iu
429.7282481000001
vioscreen_vite_iu
11.5107355
vioscreen_vitk
105.3699272
vioscreen_water
2821.0316780000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.875726235
vioscreen_whole_grain_servings
1.54047
vioscreen_xylitol
0.011890411000000002
vioscreen_zinc
13.17079811
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
95.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)