American Gut Project; 10317.000003399
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633827
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-10T05:20:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000003399
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000003399
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1957.0
bmi
23.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
08:20
collection_timestamp
2015-07-07 08:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Far West
elevation
15.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
16bd25c4e127e632f0c9ebff26592fc4e2aa9425cd06a4cbedb2689fd5b25bc6c601b21006fae6c1a688a23e74df024c15503d93eff812e989876aec08e79d17
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
38.5
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Yes
longitude
-121.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000003399
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
b4ef688a5817b2e2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.0398081319999997
vioscreen_addsugar
8.91010876
vioscreen_adsugtot
8.664411655
vioscreen_age
215.0
vioscreen_alanine
0.9193424590000001
vioscreen_alcohol
0.000246575
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
3465.544178
vioscreen_alphtoce
10.73273892
vioscreen_alphtoco
9.775479586
vioscreen_arginine
1.2756712190000001
vioscreen_ash
13.66559022
vioscreen_aspartam
0.0
vioscreen_aspartic
2.3750133780000002
vioscreen_avcarb
75.85321597
vioscreen_bcodeid
Not provided
vioscreen_betacar
20828.14247
vioscreen_betacryp
92.01847175
vioscreen_betaine
60.61124251
vioscreen_betatoco
0.22876714399999998
vioscreen_biochana
0.0041917809999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
266.7900685
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.14619000000000001
vioscreen_calcium_servings
1.5848200000000001
vioscreen_calories
793.6809932
vioscreen_carbo
98.58562714
vioscreen_cholest
14.62424551
vioscreen_choline
119.67747220000001
vioscreen_clac9t11
0.007342465
vioscreen_clat10c12
0.001890411
vioscreen_copper
1.245315008
vioscreen_coumest
0.007780822
vioscreen_cystine
0.279397269
vioscreen_d_cheese
0.132986304
vioscreen_d_milk
0.01320548
vioscreen_d_tot_soym
0.146191782
vioscreen_d_total
0.146191782
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.526575334
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.997506756
vioscreen_discfat_oil
25.29559075
vioscreen_discfat_sol
3.1472602739999997
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0017260270000000002
vioscreen_f_citmlb
0.767287665
vioscreen_f_nj_citmlb
0.7612054690000001
vioscreen_f_nj_other
1.031315048
vioscreen_f_nj_total
1.792548025
vioscreen_f_other
1.031315048
vioscreen_f_total
1.798630137
vioscreen_fat
42.02415721
vioscreen_fiber
22.73279645
vioscreen_fibh2o
4.957973365
vioscreen_fibinso
17.87312179
vioscreen_finished
7/7/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
415.4357877
vioscreen_fol_nat
398.2321062
vioscreen_fol_syn
10.11876739
vioscreen_formontn
0.000739726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.6
vioscreen_fructose
13.13090218
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.375972591
vioscreen_g_total
0.375972591
vioscreen_g_whl
0.0
vioscreen_galactos
0.282328775
vioscreen_gammtoco
8.45857569
vioscreen_gender
false
vioscreen_genistn
0.658191754
vioscreen_glac
23.83638164
vioscreen_gltc
27.29539812
vioscreen_glucose
12.94651916
vioscreen_glutamic
3.487917715
vioscreen_glycine
0.786109653
vioscreen_glycitn
0.253945191
vioscreen_grams
5497.235959000001
vioscreen_hei2010_dairy
1.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
5.1
vioscreen_hei_milk
1.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.7
vioscreen_hei_score
66.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.452547883
vioscreen_inositol
0.078794516
vioscreen_iron
6.536219767
vioscreen_isoleuc
0.8001096120000001
vioscreen_isomalt
0.0
vioscreen_joules
3320.759247
vioscreen_juice_servings
0.012159999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
0.361479459
vioscreen_legumes
0.06928766900000001
vioscreen_leucine
1.2466575309999999
vioscreen_line_gi
170.5982342
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15099.25205
vioscreen_lycopene
2964.116438
vioscreen_lysine
1.08750694
vioscreen_m_egg
0.00430137
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.003452055
vioscreen_m_mpf
0.009561644000000001
vioscreen_m_nutsd
0.560684957
vioscreen_m_organ
0.0
vioscreen_m_poult
0.006109589
vioscreen_m_soy
0.154767128
vioscreen_magnes
262.25522259999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.353780835
vioscreen_mangan
5.313315363
vioscreen_mannitol
0.29961644
vioscreen_methhis3
0.06279452099999999
vioscreen_methion
0.285315109
vioscreen_mfa141
0.012465753000000001
vioscreen_mfa161
0.613671248
vioscreen_mfa181
17.81841155
vioscreen_mfa201
0.164301373
vioscreen_mfa221
0.014054795
vioscreen_mfatot
18.69213533
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.775479586
vioscreen_nccglbr
57.13663313
vioscreen_nccglgr
39.96805972
vioscreen_niacin
6.992218267999999
vioscreen_niacineq
10.95627341
vioscreen_nitrogen
3.23090419
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.566602566
vioscreen_oxalic
517.0101884
vioscreen_oxalicm
513.0336901000001
vioscreen_pantothe
3.163506662
vioscreen_pectins
5.394520547999999
vioscreen_pfa182
10.69153401
vioscreen_pfa183
1.564684891
vioscreen_pfa184
0.000356164
vioscreen_pfa204
0.004876712
vioscreen_pfa205
0.0004931509999999999
vioscreen_pfa225
0.0007123289999999999
vioscreen_pfa226
0.000356164
vioscreen_pfatot
12.28517632
vioscreen_phenylal
0.8498904709999999
vioscreen_phosphor
427.44323629999997
vioscreen_phytic
305.22140410000003
vioscreen_pinitol
0.007561644
vioscreen_potass
2793.165753
vioscreen_procdate
10/28/15
vioscreen_proline
0.98013707
vioscreen_protanim
1.883561644
vioscreen_protein
19.82901461
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.9461098
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
313.0
vioscreen_retinol
25.16265786
vioscreen_rgrain
0.38421919299999996
vioscreen_ribofla
0.8116438359999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.5358400000000003
vioscreen_satoco
0.0
vioscreen_selenium
19.69758802
vioscreen_serine
0.919863014
vioscreen_sfa100
0.071561641
vioscreen_sfa120
0.083643832
vioscreen_sfa140
0.323397263
vioscreen_sfa160
5.407972028
vioscreen_sfa170
0.019068492
vioscreen_sfa180
1.4873423119999998
vioscreen_sfa200
0.126356161
vioscreen_sfa220
0.142547952
vioscreen_sfa40
0.08046575
vioscreen_sfa60
0.041424657000000004
vioscreen_sfa80
0.033013699
vioscreen_sfatot
7.924191326
vioscreen_sodium
1683.628253
vioscreen_sorbitol
0.768465727
vioscreen_srvid
20081.0
vioscreen_starch
16.74613656
vioscreen_started
7/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.29093135
vioscreen_sweet_servings
0.08327000000000001
vioscreen_tagatose
0.381123289
vioscreen_tfa161t
0.009123286999999999
vioscreen_tfa181t
0.076219177
vioscreen_tfa182t
0.125945198
vioscreen_tgrain
0.38421919299999996
vioscreen_thiamin
0.636410857
vioscreen_threonin
0.82983574
vioscreen_time
20.0
vioscreen_totaltfa
0.211890422
vioscreen_totcla
0.009260274
vioscreen_totfolat
408.3508562
vioscreen_totsugar
43.11142712
vioscreen_tryptoph
0.239506844
vioscreen_tyrosine
0.601479475
vioscreen_user_id
20081.0
vioscreen_v_drkgr
1.458876686
vioscreen_v_orange
0.9792876779999999
vioscreen_v_other
1.56356151
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0004931509999999999
vioscreen_v_tomato
0.082438357
vioscreen_v_total
4.0846305119999995
vioscreen_valine
0.931506849
vioscreen_veg5_day
9.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
37761.81918
vioscreen_vita_rae
1909.074486
vioscreen_vita_re
3792.9839039999997
vioscreen_vitb12
0.20172604100000002
vioscreen_vitb6
1.191561597
vioscreen_vitc
150.1549872
vioscreen_vitd
0.291232885
vioscreen_vitd2
0.000136986
vioscreen_vitd3
0.291068487
vioscreen_vitd_iu
11.6493154
vioscreen_vite_iu
14.58051959
vioscreen_vitk
692.5025684999999
vioscreen_water
5324.9267119999995
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.046465756
vioscreen_zinc
3.9671232880000002
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)