American Gut Project; 10317.000031581
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634334
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031581
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031581
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
24.03
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
08:30
collection_timestamp
2015-09-09 08:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
500.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
a5cb5f815c15654a28efe8a1dfc5e16d41315a96ed72598925c9e952291848222ac91834930f32123ca73a1620c8080451e2bf21d876af38fc01fe93184d08bb
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-82.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031581
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NC
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
ba8303ff447a2fab
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.989808967999999
vioscreen_addsugar
38.8190122
vioscreen_adsugtot
34.53561376
vioscreen_age
214.0
vioscreen_alanine
2.587287464
vioscreen_alcohol
0.854739756
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
706.8283389999999
vioscreen_alphtoce
12.70197185
vioscreen_alphtoco
11.56914999
vioscreen_arginine
3.578438035
vioscreen_ash
25.21323577
vioscreen_aspartam
0.0
vioscreen_aspartic
6.423096372000001
vioscreen_avcarb
190.28024399999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
13934.59178
vioscreen_betacryp
271.96230739999993
vioscreen_betaine
147.1955586
vioscreen_betatoco
0.289260279
vioscreen_biochana
0.052849312
vioscreen_bmi
Not provided
vioscreen_caffeine
237.33929790000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9119200000000001
vioscreen_calcium_servings
3.20507
vioscreen_calories
1729.7753420000001
vioscreen_carbo
230.8733305
vioscreen_cholest
264.99790240000004
vioscreen_choline
408.28831339999994
vioscreen_clac9t11
0.062684934
vioscreen_clat10c12
0.010410959000000001
vioscreen_copper
1.9083012830000001
vioscreen_coumest
0.446986285
vioscreen_cystine
0.897013625
vioscreen_d_cheese
0.535479444
vioscreen_d_milk
0.318931517
vioscreen_d_tot_soym
1.159780842
vioscreen_d_total
0.9119177409999999
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
2.408684885
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.194027417
vioscreen_discfat_oil
24.44600011
vioscreen_discfat_sol
30.50901381
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.607506864
vioscreen_f_nj_citmlb
0.21216439
vioscreen_f_nj_other
0.614876734
vioscreen_f_nj_total
0.827068507
vioscreen_f_other
0.614876734
vioscreen_f_total
1.222410939
vioscreen_fat
67.80659782
vioscreen_fiber
40.57416256
vioscreen_fibh2o
11.79202697
vioscreen_fibinso
28.6115609
vioscreen_finished
11/1/14
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
473.06909249999995
vioscreen_fol_nat
422.1680223
vioscreen_fol_syn
29.89372592
vioscreen_formontn
0.004904109
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.5
vioscreen_frtsumm
2.4
vioscreen_fructose
17.97035531
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.909178015
vioscreen_g_total
5.139260154
vioscreen_g_whl
3.230082138
vioscreen_galactos
0.198301383
vioscreen_gammtoco
9.972903735
vioscreen_gender
false
vioscreen_genistn
2.934082366
vioscreen_glac
91.33052226
vioscreen_gltc
107.88529540000002
vioscreen_glucose
18.06227526
vioscreen_glutamic
11.71421902
vioscreen_glycine
2.358027377
vioscreen_glycitn
0.384904125
vioscreen_grams
3466.879452
vioscreen_hei2010_dairy
5.2
vioscreen_hei2010_empty_calories
17.0
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
4.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.4
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.3
vioscreen_hei_score
78.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.5372603740000002
vioscreen_inositol
0.241315053
vioscreen_iron
16.28268675
vioscreen_isoleuc
2.6979450380000003
vioscreen_isomalt
0.0
vioscreen_joules
7237.373288
vioscreen_juice_servings
0.79066
vioscreen_lactitol
0.0
vioscreen_lactose
5.21662999
vioscreen_legumes
1.1668219579999999
vioscreen_leucine
4.635013444
vioscreen_line_gi
481.4528682
vioscreen_low_fat_dairy_serving
0.057510000000000006
vioscreen_lutzeax
11247.00822
vioscreen_lycopene
9544.673288
vioscreen_lysine
3.691369462
vioscreen_m_egg
1.035013695
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.184410952
vioscreen_m_mpf
0.184410952
vioscreen_m_nutsd
1.098520525
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.248246577
vioscreen_magnes
420.32821060000003
vioscreen_maltitol
0.0
vioscreen_maltose
5.063314694
vioscreen_mangan
5.607452642999999
vioscreen_mannitol
0.46838362200000005
vioscreen_methhis3
1.358410979
vioscreen_methion
1.059342559
vioscreen_mfa141
0.0610137
vioscreen_mfa161
0.760219208
vioscreen_mfa181
25.86057898
vioscreen_mfa201
0.242547984
vioscreen_mfa221
0.012821919
vioscreen_mfatot
27.11769852
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.56914999
vioscreen_nccglbr
146.36451200000002
vioscreen_nccglgr
102.378125
vioscreen_niacin
12.89295939
vioscreen_niacineq
25.34906357
vioscreen_nitrogen
10.53476763
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4933423190000001
vioscreen_oxalic
402.3755565
vioscreen_oxalicm
406.00333900000004
vioscreen_pantothe
6.335425139
vioscreen_pectins
5.771890384
vioscreen_pfa182
11.85580854
vioscreen_pfa183
1.464465834
vioscreen_pfa184
0.001041096
vioscreen_pfa204
0.095150684
vioscreen_pfa205
0.004109589
vioscreen_pfa225
0.002575342
vioscreen_pfa226
0.021150686000000002
vioscreen_pfatot
13.57235659
vioscreen_phenylal
2.99476703
vioscreen_phosphor
1314.7235449999998
vioscreen_phytic
1196.735017
vioscreen_pinitol
0.01539726
vioscreen_potass
3571.0160960000003
vioscreen_procdate
10/28/15
vioscreen_proline
3.62810995
vioscreen_protanim
19.27131582
vioscreen_protein
64.31477419
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
45.04345569
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
769.0
vioscreen_retinol
271.352226
vioscreen_rgrain
1.8694794119999998
vioscreen_ribofla
1.827945406
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.1941899999999999
vioscreen_satoco
0.0
vioscreen_selenium
85.28745184
vioscreen_serine
3.344629575
vioscreen_sfa100
0.479835615
vioscreen_sfa120
1.08353422
vioscreen_sfa140
1.963452148
vioscreen_sfa160
11.29013672
vioscreen_sfa170
0.083643837
vioscreen_sfa180
4.491397555
vioscreen_sfa200
0.18605484600000002
vioscreen_sfa220
0.222821923
vioscreen_sfa40
0.515260252
vioscreen_sfa60
0.28613701399999997
vioscreen_sfa80
0.261616433
vioscreen_sfatot
21.25112238
vioscreen_sodium
4418.092807999999
vioscreen_sorbitol
0.569780825
vioscreen_srvid
14329.0
vioscreen_starch
90.29943279
vioscreen_started
11/1/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.93890465
vioscreen_sweet_servings
0.5475800000000001
vioscreen_tagatose
0.770027391
vioscreen_tfa161t
0.05523287599999999
vioscreen_tfa181t
1.164958797
vioscreen_tfa182t
0.26005479
vioscreen_tgrain
4.971013485
vioscreen_thiamin
1.345479302
vioscreen_threonin
2.229178316
vioscreen_time
28.0
vioscreen_totaltfa
1.553945212
vioscreen_totcla
0.074000001
vioscreen_totfolat
452.0617295
vioscreen_totsugar
81.9695045
vioscreen_tryptoph
0.747506923
vioscreen_tyrosine
2.016821958
vioscreen_user_id
14329.0
vioscreen_v_drkgr
0.6872328670000001
vioscreen_v_orange
0.468273968
vioscreen_v_other
1.50139712
vioscreen_v_potato
0.032493152000000004
vioscreen_v_starcy
0.026164384
vioscreen_v_tomato
0.556630132
vioscreen_v_total
3.2724111060000003
vioscreen_valine
3.192493512
vioscreen_veg5_day
5.5
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.2
vioscreen_visit
1.0
vioscreen_vita_iu
24945.060269999998
vioscreen_vita_rae
1473.3513699999999
vioscreen_vita_re
2675.350514
vioscreen_vitb12
1.573917922
vioscreen_vitb6
1.494958663
vioscreen_vitc
177.0453018
vioscreen_vitd
3.40627408
vioscreen_vitd2
0.21873971600000003
vioscreen_vitd3
3.187534447
vioscreen_vitd_iu
136.2509632
vioscreen_vite_iu
17.22747886
vioscreen_vitk
465.5437928
vioscreen_water
3102.84726
vioscreen_weight
Not provided
vioscreen_wgrain
3.1015340730000003
vioscreen_whole_grain_servings
3.23008
vioscreen_xylitol
0.026684931000000002
vioscreen_zinc
12.70317717
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily