American Gut Project; 10317.000029164
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633671
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029164
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
true
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29164
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
35.96
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/03/2015
collection month
July
collection season
Summer
collection time
14:10
collection_timestamp
2015-07-03 14:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Plains
elevation
201.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
5962ac0d62976676d16808858b4a781d1bdfebd0e214e6e3f329fafca8ffe10205b5c4d2edad2ca0555789a16567329a880c28b25976b097f52ed374a2442b1b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.7
level_of_education
Bachelor's degree
liver_disease
Diagnosed by a medical professional (doctor, physician assistant)
livingwith
No
longitude
-90.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029164
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MO
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
9e12a0c36c63dddf
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.0515344069999997
vioscreen_a_cal
380.8179795
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
24.74684825
vioscreen_addsugar
124.5950342
vioscreen_adsugtot
105.8386237
vioscreen_age
215.0
vioscreen_alanine
4.130794828
vioscreen_alcohol
47.04436002
vioscreen_alcohol_servings
3.05153
vioscreen_alphacar
1983.742295
vioscreen_alphtoce
13.64065844
vioscreen_alphtoco
12.01548052
vioscreen_arginine
4.878493552
vioscreen_ash
22.38890331
vioscreen_aspartam
0.0
vioscreen_aspartic
7.99386304
vioscreen_avcarb
272.1584546
vioscreen_bcodeid
Not provided
vioscreen_betacar
12726.14932
vioscreen_betacryp
196.14574059999998
vioscreen_betaine
113.376723
vioscreen_betatoco
0.510109512
vioscreen_biochana
0.003890411
vioscreen_bmi
Not provided
vioscreen_caffeine
614.702226
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.9086
vioscreen_calcium_servings
3.1689
vioscreen_calories
2650.1397260000003
vioscreen_carbo
301.8661173
vioscreen_cholest
293.15004280000005
vioscreen_choline
442.6272688
vioscreen_clac9t11
0.124273953
vioscreen_clat10c12
0.026301368
vioscreen_copper
1.6690138730000001
vioscreen_coumest
0.288465735
vioscreen_cystine
1.0795615
vioscreen_d_cheese
0.292931502
vioscreen_d_milk
1.239287745
vioscreen_d_tot_soym
1.90860278
vioscreen_d_total
1.90860278
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.30076712
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.134904417
vioscreen_discfat_oil
25.87419467
vioscreen_discfat_sol
49.08951199
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001479452
vioscreen_f_citmlb
0.566136943
vioscreen_f_nj_citmlb
0.563945195
vioscreen_f_nj_other
1.047972629
vioscreen_f_nj_total
1.612081951
vioscreen_f_other
1.047972629
vioscreen_f_total
1.614273698
vioscreen_fat
95.75680651
vioscreen_fiber
29.66432738
vioscreen_fibh2o
9.075287617999999
vioscreen_fibinso
20.59926156
vioscreen_finished
7/3/15
vioscreen_fish_servings
1.58231
vioscreen_fol_deqv
369.4715325
vioscreen_fol_nat
316.33929789999996
vioscreen_fol_syn
31.21159033
vioscreen_formontn
0.002219178
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.2
vioscreen_fructose
28.21698416
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.402821998
vioscreen_g_total
4.103917621
vioscreen_g_whl
2.7010683660000003
vioscreen_galactos
1.254219118
vioscreen_gammtoco
13.89775391
vioscreen_gender
false
vioscreen_genistn
0.114904116
vioscreen_glac
127.46454409999998
vioscreen_gltc
138.2531571
vioscreen_glucose
31.51874197
vioscreen_glutamic
15.80956229
vioscreen_glycine
3.6836439160000003
vioscreen_glycitn
0.0
vioscreen_grams
4726.164384000001
vioscreen_hei2010_dairy
5.5
vioscreen_hei2010_empty_calories
8.0
vioscreen_hei2010_fatty_acids
2.4
vioscreen_hei2010_fruit
3.8
vioscreen_hei2010_greens_beans
2.6
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
4.6
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.8
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
3.8
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.1
vioscreen_hei_sat_fat
4.9
vioscreen_hei_score
63.0
vioscreen_hei_sodium
8.1
vioscreen_hei_sol_fat_alc_add_sug
2.2
vioscreen_hei_veg
4.6
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
2.357698289
vioscreen_inositol
0.28013698600000003
vioscreen_iron
12.85610686
vioscreen_isoleuc
3.785315443
vioscreen_isomalt
0.0
vioscreen_joules
11088.189040000001
vioscreen_juice_servings
0.0044399999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
21.59958931
vioscreen_legumes
0.0
vioscreen_leucine
6.601971853999999
vioscreen_line_gi
768.2900685
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
1813.3472600000002
vioscreen_lycopene
3350.380822
vioscreen_lysine
5.8249317739999995
vioscreen_m_egg
0.5948493020000001
vioscreen_m_fish_hi
0.475726026
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.06394520599999999
vioscreen_m_meat
1.806986435
vioscreen_m_mpf
4.443643983
vioscreen_m_nutsd
2.399671246
vioscreen_m_organ
0.0
vioscreen_m_poult
1.671068333
vioscreen_m_soy
0.000136986
vioscreen_magnes
482.8095034
vioscreen_maltitol
0.0
vioscreen_maltose
6.690218991
vioscreen_mangan
7.044684423
vioscreen_mannitol
0.461068517
vioscreen_methhis3
17.86673935
vioscreen_methion
1.945534233
vioscreen_mfa141
0.086821914
vioscreen_mfa161
1.120520605
vioscreen_mfa181
31.92057203
vioscreen_mfa201
0.385369915
vioscreen_mfa221
0.072109593
vioscreen_mfatot
33.98389608
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.01548052
vioscreen_nccglbr
225.54398540000003
vioscreen_nccglgr
157.78075769999998
vioscreen_niacin
24.74898866
vioscreen_niacineq
39.39648973
vioscreen_nitrogen
13.77270976
vioscreen_non_fried_fish_servings
1.58231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7681918209999998
vioscreen_oxalic
319.29612589999994
vioscreen_oxalicm
320.9222389
vioscreen_pantothe
8.016629655
vioscreen_pectins
4.141808246
vioscreen_pfa182
16.95265812
vioscreen_pfa183
1.4965206619999998
vioscreen_pfa184
0.016821917
vioscreen_pfa204
0.153561652
vioscreen_pfa205
0.064657541
vioscreen_pfa225
0.038712329
vioscreen_pfa226
0.15232875199999998
vioscreen_pfatot
18.96229934
vioscreen_phenylal
3.743808192
vioscreen_phosphor
1558.736473
vioscreen_phytic
884.7853596000001
vioscreen_pinitol
0.053369862000000004
vioscreen_potass
4425.114726
vioscreen_procdate
10/28/15
vioscreen_proline
5.313205332
vioscreen_protanim
57.70246682
vioscreen_protein
84.50672624
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.79775257
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
329.0
vioscreen_retinol
311.18300510000006
vioscreen_rgrain
1.250328754
vioscreen_ribofla
2.6984655930000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.16808
vioscreen_satoco
0.0
vioscreen_selenium
125.0641588
vioscreen_serine
4.032465687
vioscreen_sfa100
0.7866026999999999
vioscreen_sfa120
1.968739632
vioscreen_sfa140
3.232027237
vioscreen_sfa160
17.31972523
vioscreen_sfa170
0.12167123199999999
vioscreen_sfa180
8.817397527999999
vioscreen_sfa200
0.262000034
vioscreen_sfa220
0.38347941399999996
vioscreen_sfa40
0.742465753
vioscreen_sfa60
0.48076715299999995
vioscreen_sfa80
0.556438415
vioscreen_sfatot
35.06315283
vioscreen_sodium
2873.564041
vioscreen_sorbitol
0.7481642629999999
vioscreen_srvid
20056.0
vioscreen_starch
60.05021939
vioscreen_started
7/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
76.72849422
vioscreen_sweet_servings
1.89337
vioscreen_tagatose
7.5220275039999995
vioscreen_tfa161t
0.039150685
vioscreen_tfa181t
1.7142740330000001
vioscreen_tfa182t
0.663397259
vioscreen_tgrain
3.971013485
vioscreen_thiamin
1.290685032
vioscreen_threonin
3.3056988439999997
vioscreen_time
19.0
vioscreen_totaltfa
2.490191734
vioscreen_totcla
0.150821926
vioscreen_totfolat
347.5507491
vioscreen_totsugar
165.35821919999998
vioscreen_tryptoph
0.8794247140000001
vioscreen_tyrosine
3.028383856
vioscreen_user_id
20056.0
vioscreen_v_drkgr
0.279424673
vioscreen_v_orange
0.727890391
vioscreen_v_other
1.22200008
vioscreen_v_potato
0.075972601
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.379041071
vioscreen_v_total
2.684301089
vioscreen_valine
4.396136558
vioscreen_veg5_day
5.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.4
vioscreen_visit
1.0
vioscreen_vita_iu
24065.32055
vioscreen_vita_rae
1462.525171
vioscreen_vita_re
2613.865925
vioscreen_vitb12
4.5757257330000005
vioscreen_vitb6
2.201780889
vioscreen_vitc
151.4505351
vioscreen_vitd
7.347671634
vioscreen_vitd2
0.0
vioscreen_vitd3
7.347671634
vioscreen_vitd_iu
293.90686539999996
vioscreen_vite_iu
17.87564212
vioscreen_vitk
128.3120719
vioscreen_water
4204.533219
vioscreen_weight
Not provided
vioscreen_wgrain
2.720684898
vioscreen_whole_grain_servings
2.70107
vioscreen_xylitol
0.091643838
vioscreen_zinc
12.38462784
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
92.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)