American Gut Project; 10317.000013244
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632835
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:00Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000013244
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000013244
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
26.63
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-18
collection month
May
collection season
Spring
collection time
05:00
collection_timestamp
2015-05-18 05:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
355.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c1fc6ad8eafe56b8f54a8d2172cc72d1aeece8bb4d0c6b985305101f90e31e39ac167a5b0a8beaa9ec0b22b17334fc7ab173fc19bb3b3dd232c7955c032940fb
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.3
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
Yes
longitude
-111.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000013244
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AZ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
c1f124263f9ab88b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.8152604610000003
vioscreen_addsugar
14.31758883
vioscreen_adsugtot
12.1131234
vioscreen_age
215.0
vioscreen_alanine
4.094657668
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
258.4860445
vioscreen_alphtoce
8.178328339
vioscreen_alphtoco
7.40594566
vioscreen_arginine
4.430055049
vioscreen_ash
12.60586339
vioscreen_aspartam
0.0
vioscreen_aspartic
7.250191967999999
vioscreen_avcarb
59.85619114
vioscreen_bcodeid
Not provided
vioscreen_betacar
3669.934932
vioscreen_betacryp
216.7204409
vioscreen_betaine
36.16282106
vioscreen_betatoco
0.069315077
vioscreen_biochana
0.000273973
vioscreen_bmi
Not provided
vioscreen_caffeine
266.31785099999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.30564
vioscreen_calcium_servings
1.08392
vioscreen_calories
1273.154366
vioscreen_carbo
68.65200664
vioscreen_cholest
929.1241438
vioscreen_choline
778.5167807999999
vioscreen_clac9t11
0.11879452199999999
vioscreen_clat10c12
0.027506849
vioscreen_copper
0.68158908
vioscreen_coumest
0.0
vioscreen_cystine
1.164383562
vioscreen_d_cheese
0.071616437
vioscreen_d_milk
0.234027392
vioscreen_d_tot_soym
0.305643829
vioscreen_d_total
0.305643829
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.056273975
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.5986848180000002
vioscreen_discfat_oil
18.28158979
vioscreen_discfat_sol
40.94539277
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
0.321287662
vioscreen_f_nj_citmlb
0.32090410199999997
vioscreen_f_nj_other
0.37493148200000004
vioscreen_f_nj_total
0.695835605
vioscreen_f_other
0.37493148200000004
vioscreen_f_total
0.696219165
vioscreen_fat
79.1994542
vioscreen_fiber
8.79594459
vioscreen_fibh2o
1.735671454
vioscreen_fibinso
7.069533257000001
vioscreen_finished
5/19/15
vioscreen_fish_servings
1.04962
vioscreen_fol_deqv
303.9795805
vioscreen_fol_nat
296.5553082
vioscreen_fol_syn
4.369506836
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.4
vioscreen_fructose
10.79342426
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.241315053
vioscreen_g_total
0.698410912
vioscreen_g_whl
0.45709588
vioscreen_galactos
0.040356161
vioscreen_gammtoco
7.286904698
vioscreen_gender
false
vioscreen_genistn
0.001123288
vioscreen_glac
23.38268675
vioscreen_gltc
26.24452055
vioscreen_glucose
12.10252033
vioscreen_glutamic
11.2758361
vioscreen_glycine
3.365123676
vioscreen_glycitn
0.0
vioscreen_grams
2810.8299660000002
vioscreen_hei2010_dairy
1.8
vioscreen_hei2010_empty_calories
11.2
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
3.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
55.3
vioscreen_hei2010_sea_foods_plant_protiens
2.9
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.4
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
53.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
2.048219278
vioscreen_inositol
0.048219184000000005
vioscreen_iron
7.507726883999999
vioscreen_isoleuc
3.5900002680000003
vioscreen_isomalt
0.0
vioscreen_joules
5326.878425
vioscreen_juice_servings
0.00079
vioscreen_lactitol
0.0
vioscreen_lactose
3.4202740389999997
vioscreen_legumes
0.0
vioscreen_leucine
5.8469044310000005
vioscreen_line_gi
233.1384204
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2901.052397
vioscreen_lycopene
4666.463014
vioscreen_lysine
5.6334526170000006
vioscreen_m_egg
4.006493137
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.5191506579999999
vioscreen_m_frank
0.217671225
vioscreen_m_meat
2.209753418
vioscreen_m_mpf
4.775342466000001
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
1.7497533509999998
vioscreen_m_soy
0.000109589
vioscreen_magnes
176.3215111
vioscreen_maltitol
0.0
vioscreen_maltose
0.5878082689999999
vioscreen_mangan
3.840520321
vioscreen_mannitol
0.23600001899999998
vioscreen_methhis3
19.326027399999997
vioscreen_methion
1.984301423
vioscreen_mfa141
0.079315071
vioscreen_mfa161
1.5376712330000002
vioscreen_mfa181
27.02260542
vioscreen_mfa201
0.325534246
vioscreen_mfa221
0.008027397
vioscreen_mfatot
29.07273919
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.40594566
vioscreen_nccglbr
43.49104238
vioscreen_nccglgr
30.42545216
vioscreen_niacin
11.30616438
vioscreen_niacineq
24.31912725
vioscreen_nitrogen
11.76876739
vioscreen_non_fried_fish_servings
1.04962
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.887506856
vioscreen_oxalic
195.2783604
vioscreen_oxalicm
173.7963185
vioscreen_pantothe
5.109835857
vioscreen_pectins
1.632438263
vioscreen_pfa182
12.84876659
vioscreen_pfa183
1.700986261
vioscreen_pfa184
0.001315068
vioscreen_pfa204
0.407917807
vioscreen_pfa205
0.037890408
vioscreen_pfa225
0.021260273
vioscreen_pfa226
0.126876716
vioscreen_pfatot
15.23183594
vioscreen_phenylal
3.2986853189999996
vioscreen_phosphor
919.8950342
vioscreen_phytic
163.9701092
vioscreen_pinitol
0.0
vioscreen_potass
2168.412671
vioscreen_procdate
10/28/15
vioscreen_proline
3.3414798269999997
vioscreen_protanim
67.43203125
vioscreen_protein
73.51240903
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
6.082164357000001
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
435.0
vioscreen_retinol
517.1715325
vioscreen_rgrain
0.223068488
vioscreen_ribofla
1.8081369059999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.81225
vioscreen_satoco
0.0
vioscreen_selenium
107.8325128
vioscreen_serine
3.794109188
vioscreen_sfa100
0.505205463
vioscreen_sfa120
0.543835533
vioscreen_sfa140
1.941507083
vioscreen_sfa160
15.41405715
vioscreen_sfa170
0.17531506300000002
vioscreen_sfa180
6.420711152000001
vioscreen_sfa200
0.129150673
vioscreen_sfa220
0.080082191
vioscreen_sfa40
0.6227123520000001
vioscreen_sfa60
0.380383552
vioscreen_sfa80
0.23419179
vioscreen_sfatot
26.59210456
vioscreen_sodium
2649.1296230000003
vioscreen_sorbitol
0.250027403
vioscreen_srvid
18728.0
vioscreen_starch
15.73043798
vioscreen_started
5/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.421808112
vioscreen_sweet_servings
0.28493
vioscreen_tagatose
0.171095882
vioscreen_tfa161t
0.035424661
vioscreen_tfa181t
1.9177261140000001
vioscreen_tfa182t
0.281369896
vioscreen_tgrain
0.472136991
vioscreen_thiamin
0.620849317
vioscreen_threonin
3.167808219
vioscreen_time
19.0
vioscreen_totaltfa
2.250904156
vioscreen_totcla
0.14734246199999998
vioscreen_totfolat
300.924786
vioscreen_totsugar
35.61659889
vioscreen_tryptoph
0.779041113
vioscreen_tyrosine
2.611890317
vioscreen_user_id
18728.0
vioscreen_v_drkgr
0.488657536
vioscreen_v_orange
0.028767123
vioscreen_v_other
1.169479328
vioscreen_v_potato
0.230301363
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.427479449
vioscreen_v_total
2.344712349
vioscreen_valine
3.9175891610000004
vioscreen_veg5_day
4.9
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
4.7
vioscreen_visit
1.0
vioscreen_vita_iu
8236.588356
vioscreen_vita_rae
842.7999143999999
vioscreen_vita_re
1168.428938
vioscreen_vitb12
4.4646300430000005
vioscreen_vitb6
1.28797273
vioscreen_vitc
119.91254280000001
vioscreen_vitd
6.156082112000001
vioscreen_vitd2
0.0
vioscreen_vitd3
6.156082112000001
vioscreen_vitd_iu
246.24328450000002
vioscreen_vite_iu
11.05865863
vioscreen_vitk
141.79021830000002
vioscreen_water
2600.983048
vioscreen_weight
Not provided
vioscreen_wgrain
0.249068503
vioscreen_whole_grain_servings
0.4571
vioscreen_xylitol
0.020164385
vioscreen_zinc
8.593340646
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)