American Gut Project; 10317.000010130
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632333
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-09T19:40:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000010130
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000010130
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
20.95
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
01/05/2015
collection month
January
collection season
Winter
collection time
08:00
collection_timestamp
2015-01-05 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
257.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
18f2e49afddb67b3c360c48826bfc2787ccc26e275825c6dd9afebc62893f5e57bcee0a02aedb777006db6eb53183d6c85508ad34d318c8120de7628c5f74232
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000010130
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Daily
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
0430d2ca4a3d8bd0
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
3.5281918880000003
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.046328526
vioscreen_addsugar
46.6218857
vioscreen_adsugtot
35.23774615
vioscreen_age
215.0
vioscreen_alanine
2.948438503
vioscreen_alcohol
0.019616439
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
269.304238
vioscreen_alphtoce
14.68901702
vioscreen_alphtoco
7.755974422
vioscreen_arginine
3.3491786169999997
vioscreen_ash
15.73246468
vioscreen_aspartam
246.48540240000003
vioscreen_aspartic
6.719397474
vioscreen_avcarb
165.6278039
vioscreen_bcodeid
Not provided
vioscreen_betacar
2044.321233
vioscreen_betacryp
13.07627488
vioscreen_betaine
62.49618472
vioscreen_betatoco
0.145232862
vioscreen_biochana
0.000739726
vioscreen_bmi
Not provided
vioscreen_caffeine
76.80553296
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
5.19008
vioscreen_calcium_servings
6.39945
vioscreen_calories
1249.5758560000002
vioscreen_carbo
175.8040133
vioscreen_cholest
86.47087436
vioscreen_choline
269.8028896
vioscreen_clac9t11
0.046082200999999996
vioscreen_clat10c12
0.008876710999999999
vioscreen_copper
0.984246575
vioscreen_coumest
0.0055890409999999995
vioscreen_cystine
0.7539451290000001
vioscreen_d_cheese
0.260383564
vioscreen_d_milk
4.834438209
vioscreen_d_tot_soym
5.190081871
vioscreen_d_total
5.190081871
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
4.440712958
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.141534257
vioscreen_discfat_oil
5.838739432000001
vioscreen_discfat_sol
23.76687714
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.10183561099999999
vioscreen_f_nj_citmlb
0.099561644
vioscreen_f_nj_other
0.10712326300000001
vioscreen_f_nj_total
0.206657514
vioscreen_f_other
0.113753395
vioscreen_f_total
0.21556162399999998
vioscreen_fat
31.77635381
vioscreen_fiber
9.41309664
vioscreen_fibh2o
3.1994796130000003
vioscreen_fibinso
6.205151033
vioscreen_finished
1/4/15
vioscreen_fish_servings
0.18327000000000002
vioscreen_fol_deqv
423.70440920000004
vioscreen_fol_nat
134.49938999999998
vioscreen_fol_syn
170.09888700000002
vioscreen_formontn
0.0004931509999999999
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.15068
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.4
vioscreen_fructose
9.745671688
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.988903976
vioscreen_g_total
2.359534193
vioscreen_g_whl
0.37071232200000004
vioscreen_galactos
0.11706850199999999
vioscreen_gammtoco
5.341671795
vioscreen_gender
false
vioscreen_genistn
7.529534996000001
vioscreen_glac
79.1223887
vioscreen_gltc
84.1859375
vioscreen_glucose
12.29386371
vioscreen_glutamic
15.51909514
vioscreen_glycine
2.34720576
vioscreen_glycitn
1.202931527
vioscreen_grams
2319.688699
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
14.2
vioscreen_hei2010_fatty_acids
1.4
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
0.3
vioscreen_hei2010_protien_foods
4.3
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
55.7
vioscreen_hei2010_sea_foods_plant_protiens
3.8
vioscreen_hei2010_sodium
5.1
vioscreen_hei2010_veg
1.4
vioscreen_hei2010_whole_fruit
2.1
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
1.3
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
8.6
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
2.1
vioscreen_hei_oils
3.9
vioscreen_hei_sat_fat
8.8
vioscreen_hei_score
60.1
vioscreen_hei_sodium
4.1
vioscreen_hei_sol_fat_alc_add_sug
14.7
vioscreen_hei_veg
1.4
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
2.126136926
vioscreen_inositol
0.00928767
vioscreen_iron
10.267176800000001
vioscreen_isoleuc
3.601972857
vioscreen_isomalt
0.0
vioscreen_joules
5228.225
vioscreen_juice_servings
0.01778
vioscreen_lactitol
0.0
vioscreen_lactose
57.41901755
vioscreen_legumes
0.039397261
vioscreen_leucine
6.377781196
vioscreen_line_gi
364.0161815
vioscreen_low_fat_dairy_serving
4.56803
vioscreen_lutzeax
272.4163099
vioscreen_lycopene
667.0037671
vioscreen_lysine
5.4736167589999996
vioscreen_m_egg
0.018109591
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.10443835300000001
vioscreen_m_frank
1.647561771
vioscreen_m_meat
0.06706849200000001
vioscreen_m_mpf
1.989123201
vioscreen_m_nutsd
0.31153424399999996
vioscreen_m_organ
0.0
vioscreen_m_poult
0.17005479399999998
vioscreen_m_soy
0.19482191899999998
vioscreen_magnes
291.91643839999995
vioscreen_maltitol
0.0
vioscreen_maltose
2.8937255860000004
vioscreen_mangan
2.770876532
vioscreen_mannitol
0.032712335
vioscreen_methhis3
5.279370117
vioscreen_methion
1.7013155169999998
vioscreen_mfa141
0.02038356
vioscreen_mfa161
0.440383577
vioscreen_mfa181
9.910193707000001
vioscreen_mfa201
0.090821922
vioscreen_mfa221
0.000821918
vioscreen_mfatot
10.55372699
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5.0
vioscreen_natoco
2.574191995
vioscreen_nccglbr
132.6416417
vioscreen_nccglgr
92.7708476
vioscreen_niacin
12.10139662
vioscreen_niacineq
27.43484857
vioscreen_nitrogen
12.04158819
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.804986238
vioscreen_oxalic
81.00399722
vioscreen_oxalicm
93.22907748
vioscreen_pantothe
7.6245752620000005
vioscreen_pectins
0.867205476
vioscreen_pfa182
5.562876912999999
vioscreen_pfa183
0.780356044
vioscreen_pfa184
0.000684932
vioscreen_pfa204
0.027863017
vioscreen_pfa205
0.005643835
vioscreen_pfa225
0.005780822
vioscreen_pfa226
0.013068493
vioscreen_pfatot
6.425917032
vioscreen_phenylal
3.672137535
vioscreen_phosphor
1779.580822
vioscreen_phytic
653.5651541
vioscreen_pinitol
0.01490411
vioscreen_potass
2671.288014
vioscreen_procdate
10/28/15
vioscreen_proline
5.92758856
vioscreen_protanim
53.25956229
vioscreen_protein
74.23400578
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.97394183
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
657.0
vioscreen_retinol
930.3611301000001
vioscreen_rgrain
2.453534019
vioscreen_ribofla
2.9744659010000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.16375
vioscreen_satoco
11.51202777
vioscreen_selenium
92.7885488
vioscreen_serine
4.00043845
vioscreen_sfa100
0.32268490699999997
vioscreen_sfa120
1.271260384
vioscreen_sfa140
1.334630177
vioscreen_sfa160
5.6803296229999996
vioscreen_sfa170
0.043150693
vioscreen_sfa180
2.608136906
vioscreen_sfa200
0.060438355
vioscreen_sfa220
0.060712339000000004
vioscreen_sfa40
0.304082228
vioscreen_sfa60
0.148794503
vioscreen_sfa80
0.188356143
vioscreen_sfatot
12.27155929
vioscreen_sodium
1927.671918
vioscreen_sorbitol
0.082657534
vioscreen_srvid
16759.0
vioscreen_starch
50.21551798
vioscreen_started
1/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
17.08794547
vioscreen_sweet_servings
0.43922
vioscreen_tagatose
0.998849278
vioscreen_tfa161t
0.018630139
vioscreen_tfa181t
0.930684965
vioscreen_tfa182t
0.155616436
vioscreen_tgrain
3.6964111330000002
vioscreen_thiamin
1.3459179190000001
vioscreen_threonin
2.9492053719999998
vioscreen_time
37.0
vioscreen_totaltfa
1.117397277
vioscreen_totcla
0.055041112
vioscreen_totfolat
304.59621150000004
vioscreen_totsugar
101.17016269999999
vioscreen_tryptoph
0.918657444
vioscreen_tyrosine
3.178137374
vioscreen_user_id
16759.0
vioscreen_v_drkgr
0.015150684
vioscreen_v_orange
0.114438347
vioscreen_v_other
0.06273973
vioscreen_v_potato
0.140493158
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.055095892
vioscreen_v_total
0.387917798
vioscreen_valine
4.277671499999999
vioscreen_veg5_day
0.5
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
0.8
vioscreen_visit
1.0
vioscreen_vita_iu
6751.123973000001
vioscreen_vita_rae
1112.4874140000002
vioscreen_vita_re
1294.613527
vioscreen_vitb12
8.298548534
vioscreen_vitb6
1.8179996859999998
vioscreen_vitc
51.40605201
vioscreen_vitd
15.28002729
vioscreen_vitd2
0.42739726
vioscreen_vitd3
14.85263003
vioscreen_vitd_iu
611.2010916
vioscreen_vite_iu
15.29520548
vioscreen_vitk
22.49613388
vioscreen_water
2031.492466
vioscreen_weight
Not provided
vioscreen_wgrain
1.2429315440000002
vioscreen_whole_grain_servings
0.37071
vioscreen_xylitol
0.002493151
vioscreen_zinc
11.57148036
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)