10317.000031271; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634276
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031271
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
Not provided
age years
2.0
age_corrected
Not provided
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031271
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
2013.0
bmi
19.51
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/03/2015
collection month
August
collection season
Summer
collection time
08:35
collection_timestamp
2015-08-03 08:35
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
295.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
88.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
60d633abb19558bda7302a99f4f1b3d55ba4075ff45696d420c2f3cfb8e56b8c4083e611b10cb823c0913cb70556a70ebe662c85666aa7f4622b2608ad499e49
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.8
level_of_education
Did not complete high school
liver_disease
I do not have this condition
livingwith
No
longitude
-122.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031271
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
a95e1113740f17ae
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.0
vioscreen_addsugar
0.040164383
vioscreen_adsugtot
0.040164383
vioscreen_age
215.0
vioscreen_alanine
2.094684925
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
2838.2696920000003
vioscreen_alphtoce
2.6273698359999997
vioscreen_alphtoco
2.503945212
vioscreen_arginine
2.245315008
vioscreen_ash
5.423177975
vioscreen_aspartam
0.0
vioscreen_aspartic
3.3704382489999998
vioscreen_avcarb
8.927041417
vioscreen_bcodeid
Not provided
vioscreen_betacar
7348.784932
vioscreen_betacryp
7.957233251
vioscreen_betaine
12.71739753
vioscreen_betatoco
0.019561645
vioscreen_biochana
0.0
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.0
vioscreen_calcium_servings
0.29525999999999997
vioscreen_calories
372.9092894
vioscreen_carbo
14.86386317
vioscreen_cholest
349.6892765
vioscreen_choline
312.280244
vioscreen_clac9t11
0.043013700999999994
vioscreen_clat10c12
0.016849315
vioscreen_copper
4.364027384
vioscreen_coumest
0.0
vioscreen_cystine
0.539863022
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.0
vioscreen_d_tot_soym
0.0
vioscreen_d_total
0.0
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.0
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.377369878
vioscreen_discfat_oil
0.0
vioscreen_discfat_sol
8.784520815
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.0
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.0
vioscreen_f_other
0.0
vioscreen_f_total
0.0
vioscreen_fat
18.97701466
vioscreen_fiber
5.936931453
vioscreen_fibh2o
0.9197534009999999
vioscreen_fibinso
5.130712222
vioscreen_finished
8/3/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
327.9013271
vioscreen_fol_nat
327.9013271
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
1.0315068490000001
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.184273978
vioscreen_g_total
0.184273978
vioscreen_g_whl
0.0
vioscreen_galactos
0.0
vioscreen_gammtoco
1.1233425190000002
vioscreen_gender
false
vioscreen_genistn
0.0
vioscreen_glac
1.593835616
vioscreen_gltc
2.509725994
vioscreen_glucose
1.0854247209999999
vioscreen_glutamic
5.162986275
vioscreen_glycine
1.861726108
vioscreen_glycitn
0.0
vioscreen_grams
337.817637
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
18.6
vioscreen_hei2010_fatty_acids
1.8
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
45.4
vioscreen_hei2010_sea_foods_plant_protiens
0.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
0.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
40.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.144712349
vioscreen_inositol
0.009369863
vioscreen_iron
7.451561831
vioscreen_isoleuc
1.667808219
vioscreen_isomalt
0.0
vioscreen_joules
1560.255651
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.018328767
vioscreen_legumes
0.0
vioscreen_leucine
2.949616733
vioscreen_line_gi
39.14123234
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2642.5147260000003
vioscreen_lycopene
6.027917648
vioscreen_lysine
2.8705205210000004
vioscreen_m_egg
0.0
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
2.129041029
vioscreen_m_mpf
4.187616385
vioscreen_m_nutsd
0.0
vioscreen_m_organ
2.058575356
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
54.25629816
vioscreen_maltitol
0.0
vioscreen_maltose
0.018520549
vioscreen_mangan
0.6227123520000001
vioscreen_mannitol
0.150273979
vioscreen_methhis3
8.191342707
vioscreen_methion
0.880548012
vioscreen_mfa141
0.08712329099999999
vioscreen_mfa161
0.5221370329999999
vioscreen_mfa181
6.804109588999999
vioscreen_mfa201
0.045315071
vioscreen_mfa221
0.002383562
vioscreen_mfatot
7.47246562
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
2.503945212
vioscreen_nccglbr
4.594246308
vioscreen_nccglgr
3.2133973
vioscreen_niacin
13.16997271
vioscreen_niacineq
19.56548052
vioscreen_nitrogen
5.8605482129999995
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.21860272100000003
vioscreen_oxalic
26.48252087
vioscreen_oxalicm
24.82260274
vioscreen_pantothe
4.918822239
vioscreen_pectins
1.7377809290000001
vioscreen_pfa182
1.336356218
vioscreen_pfa183
0.21860272100000003
vioscreen_pfa184
0.0
vioscreen_pfa204
0.236575338
vioscreen_pfa205
0.0
vioscreen_pfa225
0.0
vioscreen_pfa226
0.0
vioscreen_pfatot
2.131726074
vioscreen_phenylal
1.58293156
vioscreen_phosphor
519.1440924999999
vioscreen_phytic
20.91079302
vioscreen_pinitol
0.0
vioscreen_potass
850.2298801000001
vioscreen_procdate
10/28/15
vioscreen_proline
1.595315176
vioscreen_protanim
32.22323416
vioscreen_protein
36.25630084
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
4.033068346
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
236.0
vioscreen_retinol
3848.043836
vioscreen_rgrain
0.0
vioscreen_ribofla
1.8129588509999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.0
vioscreen_selenium
55.93158712
vioscreen_serine
1.485972616
vioscreen_sfa100
0.031726027000000004
vioscreen_sfa120
0.029945204
vioscreen_sfa140
0.343698622
vioscreen_sfa160
3.889999933
vioscreen_sfa170
0.014383561999999999
vioscreen_sfa180
2.3981916869999997
vioscreen_sfa200
0.001150685
vioscreen_sfa220
0.008082192
vioscreen_sfa40
0.0
vioscreen_sfa60
0.0
vioscreen_sfa80
0.000136986
vioscreen_sfatot
6.726876872999999
vioscreen_sodium
1021.219692
vioscreen_sorbitol
0.000821918
vioscreen_srvid
20302.0
vioscreen_starch
2.522219138
vioscreen_started
8/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
2.439616499
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.029287672999999997
vioscreen_tfa181t
0.8619725890000001
vioscreen_tfa182t
0.077342464
vioscreen_tgrain
0.0
vioscreen_thiamin
0.423479472
vioscreen_threonin
1.5927945069999998
vioscreen_time
4.0
vioscreen_totaltfa
0.984958931
vioscreen_totcla
0.05909589
vioscreen_totfolat
327.9013271
vioscreen_totsugar
4.59983579
vioscreen_tryptoph
0.38389039799999997
vioscreen_tyrosine
1.2544657670000001
vioscreen_user_id
20302.0
vioscreen_v_drkgr
0.559808182
vioscreen_v_orange
0.477315072
vioscreen_v_other
0.340191776
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
1.3773150719999998
vioscreen_valine
1.951287591
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
2.8
vioscreen_visit
1.0
vioscreen_vita_iu
27445.47945
vioscreen_vita_rae
4579.0349320000005
vioscreen_vita_re
5310.027397
vioscreen_vitb12
26.337259200000002
vioscreen_vitb6
1.067616418
vioscreen_vitc
68.65799979
vioscreen_vitd
0.806986268
vioscreen_vitd2
0.0
vioscreen_vitd3
0.806986268
vioscreen_vitd_iu
32.27945072
vioscreen_vite_iu
3.7382464680000003
vioscreen_vitk
159.46794730000002
vioscreen_water
266.801905
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.013068493
vioscreen_zinc
6.00871281
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
15.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never