American Gut Project; 10317.000029339
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633695
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029339
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29339
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
26.05
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/01/2015
collection month
July
collection season
Summer
collection time
06:45
collection_timestamp
2015-07-01 06:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
Not sure
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
119.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
03a70a3aed25513586f0e30f4af10c71bfafddc6304b8ce885ec20b59828486f9057339a4503e2c69eaed0ebd100730cc318bd723ce18c3ad3955f4e77ae9e29
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-2.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029339
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
24910c96af15beb2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.8740274510000003
vioscreen_a_cal
329.2387414
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.81923427
vioscreen_addsugar
68.14898866
vioscreen_adsugtot
53.97890625
vioscreen_age
215.0
vioscreen_alanine
2.889589242
vioscreen_alcohol
42.92498395
vioscreen_alcohol_servings
2.87403
vioscreen_alphacar
1174.031849
vioscreen_alphtoce
11.31588988
vioscreen_alphtoco
9.451395949
vioscreen_arginine
3.87104024
vioscreen_ash
20.11109669
vioscreen_aspartam
0.0
vioscreen_aspartic
6.443591476
vioscreen_avcarb
253.4652611
vioscreen_bcodeid
Not provided
vioscreen_betacar
5896.556164
vioscreen_betacryp
125.2894585
vioscreen_betaine
212.3443065
vioscreen_betatoco
0.6046574
vioscreen_biochana
0.009890411
vioscreen_bmi
Not provided
vioscreen_caffeine
169.2904966
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.73088
vioscreen_calcium_servings
3.65288
vioscreen_calories
2281.290753
vioscreen_carbo
278.7447774
vioscreen_cholest
182.94514130000002
vioscreen_choline
297.3616224
vioscreen_clac9t11
0.055506845
vioscreen_clat10c12
0.008164382
vioscreen_copper
1.644054172
vioscreen_coumest
0.009534247
vioscreen_cystine
0.9602462979999999
vioscreen_d_cheese
0.742410989
vioscreen_d_milk
0.698246577
vioscreen_d_tot_soym
1.7308769330000002
vioscreen_d_total
1.7308769330000002
vioscreen_d_yogurt
0.284821915
vioscreen_daidzein
6.057397795
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.6783838560000004
vioscreen_discfat_oil
28.73411012
vioscreen_discfat_sol
29.86514876
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0046575340000000005
vioscreen_f_citmlb
0.885643946
vioscreen_f_nj_citmlb
0.884712449
vioscreen_f_nj_other
1.265753425
vioscreen_f_nj_total
2.150466041
vioscreen_f_other
1.265753425
vioscreen_f_total
2.151397621
vioscreen_fat
69.616128
vioscreen_fiber
25.25208155
vioscreen_fibh2o
6.582355656
vioscreen_fibinso
18.68068547
vioscreen_finished
6/27/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
575.8723031000001
vioscreen_fol_nat
335.8674229
vioscreen_fol_syn
141.10661389999999
vioscreen_formontn
0.003479452
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.3
vioscreen_fructose
22.10621923
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.860849542
vioscreen_g_total
6.556657347000001
vioscreen_g_whl
2.695808473
vioscreen_galactos
0.5388766770000001
vioscreen_gammtoco
15.85717573
vioscreen_gender
false
vioscreen_genistn
8.719865689
vioscreen_glac
127.22471100000001
vioscreen_gltc
138.2936216
vioscreen_glucose
27.30992348
vioscreen_glutamic
16.84942744
vioscreen_glycine
2.482465854
vioscreen_glycitn
1.6086026130000002
vioscreen_grams
2813.243664
vioscreen_hei2010_dairy
5.8
vioscreen_hei2010_empty_calories
14.7
vioscreen_hei2010_fatty_acids
6.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.4
vioscreen_hei2010_protien_foods
4.3
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.2
vioscreen_hei2010_veg
3.3
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.9
vioscreen_hei_drk_g_org_veg_leg
2.1
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
8.6
vioscreen_hei_milk
5.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.1
vioscreen_hei_score
70.9
vioscreen_hei_sodium
4.2
vioscreen_hei_sol_fat_alc_add_sug
9.1
vioscreen_hei_veg
3.3
vioscreen_hei_whl_grains
3.9
vioscreen_height
Not provided
vioscreen_histidin
1.869369047
vioscreen_inositol
0.22567124
vioscreen_iron
20.06552868
vioscreen_isoleuc
3.20452028
vioscreen_isomalt
0.0
vioscreen_joules
9544.921233
vioscreen_juice_servings
0.00186
vioscreen_lactitol
0.0
vioscreen_lactose
15.00887735
vioscreen_legumes
0.1210685
vioscreen_leucine
5.725671554
vioscreen_line_gi
646.0172517000001
vioscreen_low_fat_dairy_serving
0.41941999999999996
vioscreen_lutzeax
2392.536815
vioscreen_lycopene
6520.682192
vioscreen_lysine
4.103699232
vioscreen_m_egg
0.694684967
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.009232876
vioscreen_m_frank
0.024630136
vioscreen_m_meat
0.027616437999999997
vioscreen_m_mpf
0.061479454
vioscreen_m_nutsd
1.119150575
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
2.52369853
vioscreen_magnes
378.55590750000005
vioscreen_maltitol
0.0
vioscreen_maltose
5.99778133
vioscreen_mangan
7.042878451
vioscreen_mannitol
0.32334249800000003
vioscreen_methhis3
0.324821911
vioscreen_methion
1.3924657530000002
vioscreen_mfa141
0.082164378
vioscreen_mfa161
0.639534185
vioscreen_mfa181
24.42400471
vioscreen_mfa201
0.255534279
vioscreen_mfa221
0.002958904
vioscreen_mfatot
25.57117669
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.451395949
vioscreen_nccglbr
214.19976459999998
vioscreen_nccglgr
149.8613228
vioscreen_niacin
16.94419012
vioscreen_niacineq
31.16232877
vioscreen_nitrogen
12.29572721
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6411231469999998
vioscreen_oxalic
289.8026327
vioscreen_oxalicm
320.27191780000004
vioscreen_pantothe
4.554574794
vioscreen_pectins
3.61008167
vioscreen_pfa182
15.20128558
vioscreen_pfa183
1.607150478
vioscreen_pfa184
0.001232877
vioscreen_pfa204
0.061095888
vioscreen_pfa205
0.010164383
vioscreen_pfa225
0.004164384
vioscreen_pfa226
0.018493151
vioscreen_pfatot
16.95778039
vioscreen_phenylal
3.578548066
vioscreen_phosphor
1399.1801369999998
vioscreen_phytic
1098.985103
vioscreen_pinitol
0.055589038
vioscreen_potass
3453.340411
vioscreen_procdate
10/28/15
vioscreen_proline
5.946163982000001
vioscreen_protanim
27.05054581
vioscreen_protein
74.77758990000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
47.72201948
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
355.0
vioscreen_retinol
380.7868579
vioscreen_rgrain
4.723533818
vioscreen_ribofla
1.971917975
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.73101
vioscreen_satoco
0.0
vioscreen_selenium
115.81465109999999
vioscreen_serine
3.90457446
vioscreen_sfa100
0.48238358200000003
vioscreen_sfa120
1.097643792
vioscreen_sfa140
1.975479419
vioscreen_sfa160
10.97745077
vioscreen_sfa170
0.078438359
vioscreen_sfa180
4.705973084
vioscreen_sfa200
0.19682192899999998
vioscreen_sfa220
0.23284930899999998
vioscreen_sfa40
0.506821933
vioscreen_sfa60
0.25175342300000003
vioscreen_sfa80
0.28416440800000003
vioscreen_sfatot
21.17438463
vioscreen_sodium
3493.163699
vioscreen_sorbitol
0.865808273
vioscreen_srvid
19994.0
vioscreen_starch
94.97004495
vioscreen_started
6/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
57.85399722
vioscreen_sweet_servings
2.8274
vioscreen_tagatose
3.0390959439999996
vioscreen_tfa161t
0.034273973
vioscreen_tfa181t
1.9366301240000001
vioscreen_tfa182t
0.34989036700000004
vioscreen_tgrain
7.377809289
vioscreen_thiamin
2.351260501
vioscreen_threonin
2.624082132
vioscreen_time
24.0
vioscreen_totaltfa
2.439260321
vioscreen_totcla
0.064876718
vioscreen_totfolat
476.9737586
vioscreen_totsugar
129.6802654
vioscreen_tryptoph
0.853150585
vioscreen_tyrosine
2.664794253
vioscreen_user_id
19994.0
vioscreen_v_drkgr
0.131095886
vioscreen_v_orange
0.247013688
vioscreen_v_other
0.36715067
vioscreen_v_potato
0.202219171
vioscreen_v_starcy
0.04106849
vioscreen_v_tomato
0.682575299
vioscreen_v_total
1.670986395
vioscreen_valine
3.824903013
vioscreen_veg5_day
2.5
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
3.3
vioscreen_visit
1.0
vioscreen_vita_iu
12181.32055
vioscreen_vita_rae
926.3059932
vioscreen_vita_re
1471.823801
vioscreen_vitb12
4.127314988
vioscreen_vitb6
1.7678629000000001
vioscreen_vitc
122.9052119
vioscreen_vitd
4.12200008
vioscreen_vitd2
0.000356164
vioscreen_vitd3
4.121643903
vioscreen_vitd_iu
164.88000319999998
vioscreen_vite_iu
14.09276809
vioscreen_vitk
128.7127783
vioscreen_water
2386.645548
vioscreen_weight
Not provided
vioscreen_wgrain
2.654246709
vioscreen_whole_grain_servings
2.69581
vioscreen_xylitol
0.057315074
vioscreen_zinc
10.12813704
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
80.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)