American Gut Project; 10317.000020475
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632916
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020475
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
34.0
age_corrected
34.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
20475
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1981.0
bmi
26.08
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
05/08/2015
collection month
May
collection season
Spring
collection time
22:00
collection_timestamp
2015-05-08 22:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Arab Emirates
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Arab Emirates
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
67ce89ee9092248bfbc2dd1b0870a8f29b5434110c5740cc7018cabb969684b31f0f8834128a999b241e592a92aba97c6b81c9eb005d263c17a51a9b7ea779f8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
Not provided
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020475
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
776bb004ee536793
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.36649316200000004
vioscreen_a_cal
42.02570099
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.056274414
vioscreen_addsugar
19.59421955
vioscreen_adsugtot
10.47441072
vioscreen_age
215.0
vioscreen_alanine
5.323479305
vioscreen_alcohol
5.485369622
vioscreen_alcohol_servings
0.36649
vioscreen_alphacar
2486.220205
vioscreen_alphtoce
15.93840968
vioscreen_alphtoco
14.66720489
vioscreen_arginine
6.887370906
vioscreen_ash
21.45936697
vioscreen_aspartam
0.0
vioscreen_aspartic
10.10975359
vioscreen_avcarb
93.27311644
vioscreen_bcodeid
Not provided
vioscreen_betacar
16183.44521
vioscreen_betacryp
262.1778253
vioscreen_betaine
73.24475064
vioscreen_betatoco
0.425315084
vioscreen_biochana
0.012767123
vioscreen_bmi
Not provided
vioscreen_caffeine
84.5343536
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.08556
vioscreen_calcium_servings
1.69088
vioscreen_calories
1615.1179789999999
vioscreen_carbo
117.29233729999999
vioscreen_cholest
581.3140839
vioscreen_choline
629.4611729
vioscreen_clac9t11
0.066794529
vioscreen_clat10c12
0.019424658
vioscreen_copper
1.936136993
vioscreen_coumest
0.011150685
vioscreen_cystine
1.330246766
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.085561643
vioscreen_d_tot_soym
0.085561643
vioscreen_d_total
0.085561643
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.5046028029999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.327890391
vioscreen_discfat_oil
22.52651969
vioscreen_discfat_sol
31.37405822
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000767123
vioscreen_f_citmlb
0.19698630600000003
vioscreen_f_nj_citmlb
0.193150706
vioscreen_f_nj_other
0.685178072
vioscreen_f_nj_total
0.878328841
vioscreen_f_other
0.685178072
vioscreen_f_total
0.882164524
vioscreen_fat
85.07952697
vioscreen_fiber
24.01994596
vioscreen_fibh2o
5.183561978
vioscreen_fibinso
18.88991733
vioscreen_finished
6/7/15
vioscreen_fish_servings
0.9748100000000001
vioscreen_fol_deqv
417.2764127
vioscreen_fol_nat
407.718964
vioscreen_fol_syn
5.619890438
vioscreen_formontn
0.00320548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.8
vioscreen_fructose
13.62326225
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.19224657
vioscreen_g_total
0.19224657
vioscreen_g_whl
0.0
vioscreen_galactos
0.11063014
vioscreen_gammtoco
10.78471212
vioscreen_gender
false
vioscreen_genistn
0.502931569
vioscreen_glac
31.08114833
vioscreen_gltc
36.54665293
vioscreen_glucose
17.6478917
vioscreen_glutamic
16.13501311
vioscreen_glycine
4.99857462
vioscreen_glycitn
0.280493143
vioscreen_grams
5037.931164
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
18.3
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.4
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.8
vioscreen_hei_score
60.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.740958603
vioscreen_inositol
0.124630152
vioscreen_iron
12.37337195
vioscreen_isoleuc
4.375342466
vioscreen_isomalt
0.0
vioscreen_joules
6757.65
vioscreen_juice_servings
0.0077
vioscreen_lactitol
0.0
vioscreen_lactose
0.929616515
vioscreen_legumes
0.079452055
vioscreen_leucine
7.31605442
vioscreen_line_gi
222.39038959999996
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
10941.21986
vioscreen_lycopene
5987.8075340000005
vioscreen_lysine
7.1123294360000004
vioscreen_m_egg
2.009780842
vioscreen_m_fish_hi
0.073369865
vioscreen_m_fish_lo
0.482054828
vioscreen_m_frank
0.902739726
vioscreen_m_meat
3.135808406
vioscreen_m_mpf
7.401726375
vioscreen_m_nutsd
3.4106849980000002
vioscreen_m_organ
0.067671235
vioscreen_m_poult
2.7400547810000004
vioscreen_m_soy
0.0009315069999999999
vioscreen_magnes
370.0206336
vioscreen_maltitol
0.0
vioscreen_maltose
3.083013498
vioscreen_mangan
3.8911781619999997
vioscreen_mannitol
0.4172329000000001
vioscreen_methhis3
30.50052173
vioscreen_methion
2.327780695
vioscreen_mfa141
0.081780823
vioscreen_mfa161
1.42726014
vioscreen_mfa181
36.7184664
vioscreen_mfa201
0.418164397
vioscreen_mfa221
0.017013699
vioscreen_mfatot
38.80460456
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.66720489
vioscreen_nccglbr
79.7453339
vioscreen_nccglgr
55.774989299999994
vioscreen_niacin
25.6203018
vioscreen_niacineq
42.60602793
vioscreen_nitrogen
16.09052066
vioscreen_non_fried_fish_servings
0.9748100000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.987643809
vioscreen_oxalic
468.6720462
vioscreen_oxalicm
492.51802230000004
vioscreen_pantothe
6.185316112000001
vioscreen_pectins
5.477835376
vioscreen_pfa182
15.73542514
vioscreen_pfa183
0.824547922
vioscreen_pfa184
0.002191781
vioscreen_pfa204
0.321479442
vioscreen_pfa205
0.036027394
vioscreen_pfa225
0.03309589
vioscreen_pfa226
0.09361643300000001
vioscreen_pfatot
17.14238415
vioscreen_phenylal
4.23394558
vioscreen_phosphor
1191.8751710000001
vioscreen_phytic
540.4917379999999
vioscreen_pinitol
0.003068493
vioscreen_potass
3483.7760270000003
vioscreen_procdate
10/28/15
vioscreen_proline
4.419944951000001
vioscreen_protanim
71.77175193
vioscreen_protein
98.64363228
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.87205426
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
513.0
vioscreen_retinol
358.559375
vioscreen_rgrain
0.223315095
vioscreen_ribofla
1.694959165
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.6366
vioscreen_satoco
0.0
vioscreen_selenium
132.3326841
vioscreen_serine
4.615753425
vioscreen_sfa100
0.123479441
vioscreen_sfa120
0.23498627100000002
vioscreen_sfa140
0.847424651
vioscreen_sfa160
13.31723165
vioscreen_sfa170
0.10997262199999999
vioscreen_sfa180
5.479533992
vioscreen_sfa200
0.275342466
vioscreen_sfa220
0.535726009
vioscreen_sfa40
0.132657519
vioscreen_sfa60
0.081068499
vioscreen_sfa80
0.055890415
vioscreen_sfatot
21.52021752
vioscreen_sodium
3423.308904
vioscreen_sorbitol
0.323178101
vioscreen_srvid
18365.0
vioscreen_starch
22.79665828
vioscreen_started
6/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.22210911
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.034630138
vioscreen_tfa181t
2.725233104
vioscreen_tfa182t
0.492274036
vioscreen_tgrain
0.223315095
vioscreen_thiamin
1.14386304
vioscreen_threonin
3.979369783
vioscreen_time
16.0
vioscreen_totaltfa
3.264794587
vioscreen_totcla
0.08810959900000001
vioscreen_totfolat
413.33886989999996
vioscreen_totsugar
47.70638378
vioscreen_tryptoph
1.018684952
vioscreen_tyrosine
3.284740208
vioscreen_user_id
18365.0
vioscreen_v_drkgr
0.833780785
vioscreen_v_orange
0.6844658
vioscreen_v_other
1.8403012630000002
vioscreen_v_potato
0.308575356
vioscreen_v_starcy
0.204958897
vioscreen_v_tomato
0.888383588
vioscreen_v_total
4.760410758
vioscreen_valine
4.766246722
vioscreen_veg5_day
9.6
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
9.5
vioscreen_visit
1.0
vioscreen_vita_iu
30458.454789999996
vioscreen_vita_rae
1821.697945
vioscreen_vita_re
3284.835616
vioscreen_vitb12
4.919177748
vioscreen_vitb6
2.5332327230000002
vioscreen_vitc
191.5484803
vioscreen_vitd
3.527233051
vioscreen_vitd2
0.0
vioscreen_vitd3
3.527233051
vioscreen_vitd_iu
141.089322
vioscreen_vite_iu
21.89051932
vioscreen_vitk
443.2193493
vioscreen_water
4727.962329
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.035835621
vioscreen_zinc
13.465150099999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
71.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never