American Gut Project; 10317.000005042
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632324
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-09T19:40:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000005042
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000005042
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1972.0
bmi
28.25
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-21
collection month
January
collection season
Winter
collection time
09:30
collection_timestamp
2015-01-21 09:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
20.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
dfba66bfde2e61602f478a395e1a6881a7974e708db6466f5c217208e08b5a70d55ca62a1b8ecc9c56e137047cb5d70d53825a6cc61b37cc4b98f7964df48a16
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-73.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
African American
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000005042
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
aaa3d5734363dc37
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.0
vioscreen_addsugar
0.008438356
vioscreen_adsugtot
0.008438356
vioscreen_age
215.0
vioscreen_alanine
1.4267123290000001
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
179.20123069999997
vioscreen_alphtoce
3.557780394
vioscreen_alphtoco
3.5193697160000004
vioscreen_arginine
1.618684784
vioscreen_ash
8.511013752
vioscreen_aspartam
0.0
vioscreen_aspartic
2.797589028
vioscreen_avcarb
77.97109375
vioscreen_bcodeid
Not provided
vioscreen_betacar
1990.567637
vioscreen_betacryp
1118.796062
vioscreen_betaine
6.34432858
vioscreen_betatoco
0.010712328
vioscreen_biochana
0.028794521
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.0
vioscreen_calcium_servings
1.38268
vioscreen_calories
555.9438784
vioscreen_carbo
95.92788956
vioscreen_cholest
46.465887200000004
vioscreen_choline
148.0083476
vioscreen_clac9t11
0.00580822
vioscreen_clat10c12
0.001123288
vioscreen_copper
0.762410956
vioscreen_coumest
0.028794521
vioscreen_cystine
0.263808222
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.0
vioscreen_d_tot_soym
0.0
vioscreen_d_total
0.0
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.02339726
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.15945205699999998
vioscreen_discfat_oil
4.877753438
vioscreen_discfat_sol
1.166410932
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
4.292164424
vioscreen_f_nj_citmlb
4.282465687
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
4.282465687
vioscreen_f_other
0.0
vioscreen_f_total
4.292164424
vioscreen_fat
12.13564319
vioscreen_fiber
17.96128799
vioscreen_fibh2o
9.447753237
vioscreen_fibinso
8.589123368
vioscreen_finished
1/22/15
vioscreen_fish_servings
3.7625
vioscreen_fol_deqv
247.940732
vioscreen_fol_nat
247.940732
vioscreen_fol_syn
0.0
vioscreen_formontn
0.028794521
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.0
vioscreen_frtsumm
8.6
vioscreen_fructose
16.93345195
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
0.0
vioscreen_g_total
0.0
vioscreen_g_whl
0.0
vioscreen_galactos
0.008082192
vioscreen_gammtoco
0.325890403
vioscreen_gender
false
vioscreen_genistn
0.01709589
vioscreen_glac
30.77717787
vioscreen_gltc
37.75345141
vioscreen_glucose
15.54468375
vioscreen_glutamic
3.545534233
vioscreen_glycine
1.4612600669999998
vioscreen_glycitn
0.0
vioscreen_grams
4135.19863
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
4.4
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.3
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.3
vioscreen_hei_sodium
9.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
4.4
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.654575337
vioscreen_inositol
0.0
vioscreen_iron
1.7058628869999999
vioscreen_isoleuc
1.004739756
vioscreen_isomalt
0.0
vioscreen_joules
2326.069349
vioscreen_juice_servings
0.0194
vioscreen_lactitol
0.0
vioscreen_lactose
0.0
vioscreen_legumes
0.0
vioscreen_leucine
1.617753538
vioscreen_line_gi
236.7
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1699.3339039999998
vioscreen_lycopene
817.3440068
vioscreen_lysine
1.9497259269999998
vioscreen_m_egg
0.0
vioscreen_m_fish_hi
2.144109522
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.013369863000000001
vioscreen_m_mpf
2.335835496
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.157041095
vioscreen_m_soy
0.0
vioscreen_magnes
145.0097817
vioscreen_maltitol
0.0
vioscreen_maltose
0.062986301
vioscreen_mangan
0.316602712
vioscreen_mannitol
0.0
vioscreen_methhis3
7.961342171
vioscreen_methion
0.645589039
vioscreen_mfa141
0.0
vioscreen_mfa161
0.427753396
vioscreen_mfa181
4.930767404
vioscreen_mfa201
0.341534236
vioscreen_mfa221
0.414191761
vioscreen_mfatot
6.155672088999999
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
3.5193697160000004
vioscreen_nccglbr
42.66846907
vioscreen_nccglgr
29.83824914
vioscreen_niacin
7.994273732000001
vioscreen_niacineq
12.40695901
vioscreen_nitrogen
4.04635595
vioscreen_non_fried_fish_servings
3.7625
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.238411012
vioscreen_oxalic
89.16937607
vioscreen_oxalicm
71.89734589
vioscreen_pantothe
2.7763287269999997
vioscreen_pectins
7.340740047000001
vioscreen_pfa182
0.99490415
vioscreen_pfa183
0.184164408
vioscreen_pfa184
0.092931502
vioscreen_pfa204
0.056821917
vioscreen_pfa205
0.281287666
vioscreen_pfa225
0.107643838
vioscreen_pfa226
0.5726301220000001
vioscreen_pfatot
2.363150484
vioscreen_phenylal
0.939342509
vioscreen_phosphor
327.56303510000004
vioscreen_phytic
71.58539705
vioscreen_pinitol
0.0
vioscreen_potass
1823.348801
vioscreen_procdate
10/28/15
vioscreen_proline
1.065397247
vioscreen_protanim
17.49589041
vioscreen_protein
25.29704088
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
7.801150471000001
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
596.0
vioscreen_retinol
43.94298748
vioscreen_rgrain
0.0
vioscreen_ribofla
0.459698612
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.07134
vioscreen_satoco
0.0
vioscreen_selenium
22.73246736
vioscreen_serine
0.979506903
vioscreen_sfa100
0.000027399999999999995
vioscreen_sfa120
0.002547945
vioscreen_sfa140
0.214520535
vioscreen_sfa160
1.6541094219999999
vioscreen_sfa170
0.012630137
vioscreen_sfa180
0.42613696799999995
vioscreen_sfa200
0.024849317000000003
vioscreen_sfa220
0.008712329
vioscreen_sfa40
0.0
vioscreen_sfa60
0.0
vioscreen_sfa80
0.0
vioscreen_sfatot
2.404876625
vioscreen_sodium
431.15059929999995
vioscreen_sorbitol
0.0
vioscreen_srvid
16965.0
vioscreen_starch
0.002986301
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.096875
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.010273972
vioscreen_tfa181t
0.090986309
vioscreen_tfa182t
0.025780824
vioscreen_tgrain
0.0
vioscreen_thiamin
0.717205476
vioscreen_threonin
0.9026575379999999
vioscreen_time
24.0
vioscreen_totaltfa
0.127013711
vioscreen_totcla
0.007287671
vioscreen_totfolat
247.940732
vioscreen_totsugar
74.42260274
vioscreen_tryptoph
0.266219194
vioscreen_tyrosine
0.717616418
vioscreen_user_id
16965.0
vioscreen_v_drkgr
0.22564383699999999
vioscreen_v_orange
0.0
vioscreen_v_other
0.310027407
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
0.535671245
vioscreen_valine
1.192328801
vioscreen_veg5_day
1.0
vioscreen_vegetable_servings
0.0
vioscreen_vegsumm
1.1
vioscreen_visit
1.0
vioscreen_vita_iu
4549.913699000001
vioscreen_vita_rae
263.9080051
vioscreen_vita_re
483.87093319999997
vioscreen_vitb12
2.5743287809999997
vioscreen_vitb6
0.867205476
vioscreen_vitc
382.1665668
vioscreen_vitd
9.122711767
vioscreen_vitd2
0.0
vioscreen_vitd3
9.122711767
vioscreen_vitd_iu
364.9084707
vioscreen_vite_iu
5.23353422
vioscreen_vitk
40.11046393
vioscreen_water
3993.991781
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.002986301
vioscreen_zinc
1.5364657469999998
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
79.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never