American Gut Project; 10317.000023097
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632632
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:19Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023097
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23097
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1957.0
bmi
23.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by an alternative medicine practitioner
collection date
2015-01-20
collection month
January
collection season
Winter
collection time
10:43
collection_timestamp
2015-01-20 10:43
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
667.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
9bb0d3d3df798e8423c2da461cc76ea3062312f315b7d5aad18f1263a57387a8241748cb224326321cd05ac8f78363becfb4d4779e2d6ccb3e172bf56ad57b7b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
36.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-115.2
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Daily
probiotic_frequency
Rarely (a few times/month)
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000023097
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
Self-diagnosed
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NV
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
09e135a11a84440c
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
Self-diagnosed
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00109589
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.073232823
vioscreen_addsugar
13.86000107
vioscreen_adsugtot
12.83928858
vioscreen_age
215.0
vioscreen_alanine
2.7630961380000003
vioscreen_alcohol
0.035589043
vioscreen_alcohol_servings
0.0011
vioscreen_alphacar
1127.917295
vioscreen_alphtoce
9.085750883
vioscreen_alphtoco
8.505152371
vioscreen_arginine
3.4449870910000002
vioscreen_ash
13.66109803
vioscreen_aspartam
0.0
vioscreen_aspartic
5.022849221
vioscreen_avcarb
112.6337115
vioscreen_bcodeid
Not provided
vioscreen_betacar
9669.360273999999
vioscreen_betacryp
38.34383829
vioscreen_betaine
49.2077911
vioscreen_betatoco
0.17199997600000003
vioscreen_biochana
0.023369865
vioscreen_bmi
Not provided
vioscreen_caffeine
46.13361515
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.08605
vioscreen_calcium_servings
1.32841
vioscreen_calories
1091.905479
vioscreen_carbo
132.6091074
vioscreen_cholest
143.92161819999998
vioscreen_choline
258.4679795
vioscreen_clac9t11
0.023068491
vioscreen_clat10c12
0.0067671219999999995
vioscreen_copper
1.0810684
vioscreen_coumest
0.150849329
vioscreen_cystine
0.6812329020000001
vioscreen_d_cheese
0.013726027
vioscreen_d_milk
0.039452054
vioscreen_d_tot_soym
0.086054789
vioscreen_d_total
0.086054789
vioscreen_d_yogurt
0.032876712
vioscreen_daidzein
0.23671231199999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.004219201
vioscreen_discfat_oil
23.36734268
vioscreen_discfat_sol
10.04704021
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.05884931400000001
vioscreen_f_nj_citmlb
0.05504109099999999
vioscreen_f_nj_other
0.07690411400000001
vioscreen_f_nj_total
0.13197260800000002
vioscreen_f_other
0.07690411400000001
vioscreen_f_total
0.135753423
vioscreen_fat
42.43671607
vioscreen_fiber
19.9667126
vioscreen_fibh2o
3.5106575739999997
vioscreen_fibinso
16.60572694
vioscreen_finished
1/19/15
vioscreen_fish_servings
3.0182700000000002
vioscreen_fol_deqv
393.0747432
vioscreen_fol_nat
306.1338827
vioscreen_fol_syn
51.15367616
vioscreen_formontn
0.002164384
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.3
vioscreen_fructose
7.410630485
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
2.910301397
vioscreen_g_total
3.27200008
vioscreen_g_whl
0.361753406
vioscreen_galactos
0.161123281
vioscreen_gammtoco
5.016439025
vioscreen_gender
false
vioscreen_genistn
0.265342462
vioscreen_glac
49.68364726
vioscreen_gltc
53.7716128
vioscreen_glucose
8.870928537000001
vioscreen_glutamic
8.676465513
vioscreen_glycine
2.431698817
vioscreen_glycitn
0.049150680999999995
vioscreen_grams
2186.863356
vioscreen_hei2010_dairy
0.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
6.5
vioscreen_hei2010_score
61.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.5
vioscreen_hei2010_whole_grains
2.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.6
vioscreen_hei_non_juice_frt
1.5
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.4
vioscreen_hei_score
68.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
1.364904116
vioscreen_inositol
0.072054803
vioscreen_iron
9.348080988
vioscreen_isoleuc
2.247562105
vioscreen_isomalt
0.0
vioscreen_joules
4568.531849
vioscreen_juice_servings
0.00762
vioscreen_lactitol
0.0
vioscreen_lactose
1.083589068
vioscreen_legumes
0.062821919
vioscreen_leucine
3.78630137
vioscreen_line_gi
214.18075770000002
vioscreen_low_fat_dairy_serving
0.03288
vioscreen_lutzeax
11456.10548
vioscreen_lycopene
2347.148973
vioscreen_lysine
3.640137053
vioscreen_m_egg
0.228712317
vioscreen_m_fish_hi
0.598986315
vioscreen_m_fish_lo
1.120958887
vioscreen_m_frank
0.0
vioscreen_m_meat
1.3981095819999998
vioscreen_m_mpf
3.570191767
vioscreen_m_nutsd
0.320383547
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.384465758
vioscreen_m_soy
0.00569863
vioscreen_magnes
216.87574909999998
vioscreen_maltitol
0.0
vioscreen_maltose
0.7116985159999999
vioscreen_mangan
2.9523835480000002
vioscreen_mannitol
0.314383562
vioscreen_methhis3
13.02750562
vioscreen_methion
1.167205309
vioscreen_mfa141
0.034082191
vioscreen_mfa161
0.680191793
vioscreen_mfa181
20.78000321
vioscreen_mfa201
0.200904115
vioscreen_mfa221
0.07356165
vioscreen_mfatot
21.87411173
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
8.505152371
vioscreen_nccglbr
97.92681935
vioscreen_nccglgr
68.49152932
vioscreen_niacin
13.17334252
vioscreen_niacineq
22.42728756
vioscreen_nitrogen
8.370824192
vioscreen_non_fried_fish_servings
3.0182700000000002
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.036684972
vioscreen_oxalic
259.586387
vioscreen_oxalicm
248.67868149999998
vioscreen_pantothe
3.4224381960000003
vioscreen_pectins
4.300685266
vioscreen_pfa182
6.70276715
vioscreen_pfa183
0.743808192
vioscreen_pfa184
0.016876713
vioscreen_pfa204
0.076986302
vioscreen_pfa205
0.080383573
vioscreen_pfa225
0.03021918
vioscreen_pfa226
0.165917812
vioscreen_pfatot
7.888547464
vioscreen_phenylal
2.161506883
vioscreen_phosphor
744.0616438
vioscreen_phytic
436.81571060000005
vioscreen_pinitol
0.006520548
vioscreen_potass
2139.2508559999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.357315022
vioscreen_protanim
29.91851723
vioscreen_protein
51.69516802
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.77644076
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
607.0
vioscreen_retinol
187.50503
vioscreen_rgrain
2.6915340060000004
vioscreen_ribofla
0.896274013
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.16953
vioscreen_satoco
0.0
vioscreen_selenium
70.98900899
vioscreen_serine
2.235507077
vioscreen_sfa100
0.074246571
vioscreen_sfa120
0.400767162
vioscreen_sfa140
0.44569865200000003
vioscreen_sfa160
5.9962475920000005
vioscreen_sfa170
0.029150687999999998
vioscreen_sfa180
2.223561577
vioscreen_sfa200
0.117068492
vioscreen_sfa220
0.085561653
vioscreen_sfa40
0.029671232999999998
vioscreen_sfa60
0.014739726000000002
vioscreen_sfa80
0.055150687999999996
vioscreen_sfatot
9.552959117999999
vioscreen_sodium
2872.617466
vioscreen_sorbitol
0.056301378
vioscreen_srvid
16928.0
vioscreen_starch
60.22102954
vioscreen_started
1/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.50599984
vioscreen_sweet_servings
0.36813
vioscreen_tagatose
0.543835616
vioscreen_tfa161t
0.020054796
vioscreen_tfa181t
0.662000055
vioscreen_tfa182t
0.12164384
vioscreen_tgrain
3.170328553
vioscreen_thiamin
0.969698553
vioscreen_threonin
2.042876278
vioscreen_time
28.0
vioscreen_totaltfa
0.8061096190000001
vioscreen_totcla
0.030273976
vioscreen_totfolat
357.287393
vioscreen_totsugar
34.769809499999994
vioscreen_tryptoph
0.556794467
vioscreen_tyrosine
1.64416437
vioscreen_user_id
16928.0
vioscreen_v_drkgr
1.097616452
vioscreen_v_orange
0.260136999
vioscreen_v_other
2.712000181
vioscreen_v_potato
0.038684931
vioscreen_v_starcy
0.23268491100000002
vioscreen_v_tomato
0.258958874
vioscreen_v_total
4.600110031
vioscreen_valine
2.560192035
vioscreen_veg5_day
8.9
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
17712.0726
vioscreen_vita_rae
1041.879709
vioscreen_vita_re
1896.2558219999999
vioscreen_vitb12
3.149096011
vioscreen_vitb6
1.6524380619999999
vioscreen_vitc
175.2331657
vioscreen_vitd
3.995808808
vioscreen_vitd2
0.002575342
vioscreen_vitd3
3.993233291
vioscreen_vitd_iu
159.8323523
vioscreen_vite_iu
12.68695687
vioscreen_vitk
555.2815925
vioscreen_water
1961.560616
vioscreen_weight
Not provided
vioscreen_wgrain
0.47876712299999996
vioscreen_whole_grain_servings
0.36175
vioscreen_xylitol
0.033561652000000004
vioscreen_zinc
6.445205479
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)