American Gut Project; 10317.000028405
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633595
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028405
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28405
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
22.87
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-06-22
collection month
June
collection season
Summer
collection time
12:25
collection_timestamp
2015-06-22 12:25
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
155.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ae9f4b262ae3e2c0e5abd6ce6cfef2bbb22ef57b3e609d56a5a0802944585537aff39b7d597bc3f004e688fe70d0672a2da4374143900e8c8857a333a8435192
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.4
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-1.1
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000028405
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
cbf05a5b465669d7
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.454301348
vioscreen_addsugar
1.732602807
vioscreen_adsugtot
1.58279444
vioscreen_age
215.0
vioscreen_alanine
3.187507023
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
772.65625
vioscreen_alphtoce
9.838603649
vioscreen_alphtoco
8.923973272000001
vioscreen_arginine
3.497589028
vioscreen_ash
16.87580801
vioscreen_aspartam
0.0
vioscreen_aspartic
6.595507144
vioscreen_avcarb
114.6405929
vioscreen_bcodeid
Not provided
vioscreen_betacar
3986.918836
vioscreen_betacryp
8.261233144
vioscreen_betaine
21.73361917
vioscreen_betatoco
0.330739729
vioscreen_biochana
0.006164384
vioscreen_bmi
Not provided
vioscreen_caffeine
118.33512409999999
vioscreen_calcium
true
vioscreen_calcium_avg
107.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
3
vioscreen_calcium_from_dairy_servings
0.23481999999999997
vioscreen_calcium_servings
0.99877
vioscreen_calories
1333.056164
vioscreen_carbo
132.9214362
vioscreen_cholest
263.1268193
vioscreen_choline
327.5001284
vioscreen_clac9t11
0.130794525
vioscreen_clat10c12
0.030246575
vioscreen_copper
1.0716985829999999
vioscreen_coumest
0.0
vioscreen_cystine
0.7464109659999999
vioscreen_d_cheese
0.0047945209999999995
vioscreen_d_milk
0.230027395
vioscreen_d_tot_soym
0.234821915
vioscreen_d_total
0.234821915
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.010849315
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.829397374
vioscreen_discfat_oil
22.31769852
vioscreen_discfat_sol
26.94090325
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.005726027
vioscreen_f_nj_citmlb
0.000876712
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.000876712
vioscreen_f_other
0.0
vioscreen_f_total
0.005726027
vioscreen_fat
64.61892658
vioscreen_fiber
18.2800808
vioscreen_fibh2o
4.252493244
vioscreen_fibinso
14.11786441
vioscreen_finished
6/18/15
vioscreen_fish_servings
2.61308
vioscreen_fol_deqv
307.3831978
vioscreen_fol_nat
248.14522689999998
vioscreen_fol_syn
34.88046607
vioscreen_formontn
0.001287671
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.18995
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
5.857725546
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
1.20556164
vioscreen_g_total
2.205917735
vioscreen_g_whl
1.0003561779999999
vioscreen_galactos
0.027479451000000002
vioscreen_gammtoco
7.640520655
vioscreen_gender
false
vioscreen_genistn
0.017835616000000002
vioscreen_glac
67.28442851
vioscreen_gltc
75.35509953
vioscreen_glucose
6.751205318999999
vioscreen_glutamic
9.90073978
vioscreen_glycine
2.738958991
vioscreen_glycitn
0.0
vioscreen_grams
3006.233562
vioscreen_hei2010_dairy
1.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
4.3
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
5.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.4
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.8
vioscreen_hei_score
57.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.5
vioscreen_height
Not provided
vioscreen_histidin
1.6586026130000002
vioscreen_inositol
0.04317808
vioscreen_iron
7.44142431
vioscreen_isoleuc
2.693944978
vioscreen_isomalt
0.0
vioscreen_joules
5577.508904
vioscreen_juice_servings
0.00975
vioscreen_lactitol
0.0
vioscreen_lactose
2.8648216769999997
vioscreen_legumes
0.04808219
vioscreen_leucine
4.468629936
vioscreen_line_gi
343.22418660000005
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3136.833904
vioscreen_lycopene
5441.806164
vioscreen_lysine
4.450246482
vioscreen_m_egg
0.576876706
vioscreen_m_fish_hi
1.063150735
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.079150683
vioscreen_m_meat
1.486082145
vioscreen_m_mpf
4.804054741
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
1.7497533509999998
vioscreen_m_soy
0.000136986
vioscreen_magnes
254.4921661
vioscreen_maltitol
0.0
vioscreen_maltose
0.35884930299999995
vioscreen_mangan
3.551068199
vioscreen_mannitol
0.271123285
vioscreen_methhis3
17.87191781
vioscreen_methion
1.4430684130000002
vioscreen_mfa141
0.066082189
vioscreen_mfa161
1.096328861
vioscreen_mfa181
20.62893167
vioscreen_mfa201
0.28131509
vioscreen_mfa221
0.180712305
vioscreen_mfatot
22.34495799
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.923973272000001
vioscreen_nccglbr
98.85718108
vioscreen_nccglgr
69.14339683
vioscreen_niacin
18.07830292
vioscreen_niacineq
28.80668611
vioscreen_nitrogen
9.563067878
vioscreen_non_fried_fish_servings
2.61308
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.380246682
vioscreen_oxalic
201.6119435
vioscreen_oxalicm
169.73575559999998
vioscreen_pantothe
3.9607946939999996
vioscreen_pectins
3.10610987
vioscreen_pfa182
13.85372565
vioscreen_pfa183
0.826712412
vioscreen_pfa184
0.041342466
vioscreen_pfa204
0.1519178
vioscreen_pfa205
0.141369869
vioscreen_pfa225
0.062958908
vioscreen_pfa226
0.308383555
vioscreen_pfatot
15.4833155
vioscreen_phenylal
2.480273939
vioscreen_phosphor
830.9257705
vioscreen_phytic
554.9836901000001
vioscreen_pinitol
0.0
vioscreen_potass
2880.1410960000003
vioscreen_procdate
10/28/15
vioscreen_proline
2.616411099
vioscreen_protanim
42.49728703
vioscreen_protein
59.51478489
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.01791792
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
385.0
vioscreen_retinol
271.4764341
vioscreen_rgrain
0.100027393
vioscreen_ribofla
0.969753401
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.00597
vioscreen_satoco
0.0
vioscreen_selenium
73.54665561
vioscreen_serine
2.525589115
vioscreen_sfa100
0.554904133
vioscreen_sfa120
0.59536994
vioscreen_sfa140
2.015424671
vioscreen_sfa160
11.69895789
vioscreen_sfa170
0.147369866
vioscreen_sfa180
4.854137347
vioscreen_sfa200
0.09619179300000001
vioscreen_sfa220
0.024958906
vioscreen_sfa40
0.674684958
vioscreen_sfa60
0.42961643200000005
vioscreen_sfa80
0.267232879
vioscreen_sfatot
21.46487719
vioscreen_sodium
3573.0479450000003
vioscreen_sorbitol
0.019726028
vioscreen_srvid
18926.0
vioscreen_starch
87.56830587
vioscreen_started
6/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
3.6049035480000002
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.000547945
vioscreen_tfa161t
0.025369864
vioscreen_tfa181t
1.5038356830000001
vioscreen_tfa182t
0.216876722
vioscreen_tgrain
2.219123234
vioscreen_thiamin
0.9394246140000001
vioscreen_threonin
2.4231232940000003
vioscreen_time
22.0
vioscreen_totaltfa
1.766547885
vioscreen_totcla
0.160931491
vioscreen_totfolat
283.0257063
vioscreen_totsugar
19.41835536
vioscreen_tryptoph
0.6438629570000001
vioscreen_tyrosine
1.9487122419999998
vioscreen_user_id
18926.0
vioscreen_v_drkgr
0.572547934
vioscreen_v_orange
0.11446575
vioscreen_v_other
1.115917802
vioscreen_v_potato
2.0438081919999997
vioscreen_v_starcy
0.094273972
vioscreen_v_tomato
0.8687670559999999
vioscreen_v_total
4.80975392
vioscreen_valine
3.0156166389999997
vioscreen_veg5_day
6.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
9.6
vioscreen_visit
1.0
vioscreen_vita_iu
8200.172603
vioscreen_vita_rae
636.2589041
vioscreen_vita_re
1001.041182
vioscreen_vitb12
3.030821918
vioscreen_vitb6
2.0295890080000003
vioscreen_vitc
92.41947774
vioscreen_vitd
6.910109428999999
vioscreen_vitd2
0.0
vioscreen_vitd3
6.910109428999999
vioscreen_vitd_iu
276.40437710000003
vioscreen_vite_iu
13.31926102
vioscreen_vitk
169.8465004
vioscreen_water
2740.6113010000004
vioscreen_weight
Not provided
vioscreen_wgrain
2.11909581
vioscreen_whole_grain_servings
1.0003600000000001
vioscreen_xylitol
0.014246576
vioscreen_zinc
7.062685279
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never