American Gut Project; 10317.000028099
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633926
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028099
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28099
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
23.34
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/03/2015
collection month
September
collection season
Fall
collection time
15:55
collection_timestamp
2015-09-03 15:55
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
257.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
173.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
4644938e5777e6c1f6fda9280830e948b00a21cefc4ba55019461b7ab6c0d568d2916504bbe9e8761d2c16f7e35c30ab00d8c5c2fdb99a7157584354df1af780
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
54.5
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
-2.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028099
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
ecfe7aa4da8b7767
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.004219201
vioscreen_a_cal
146.0658604
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.923122793
vioscreen_addsugar
26.19947828
vioscreen_adsugtot
21.616794199999998
vioscreen_age
215.0
vioscreen_alanine
3.881890786
vioscreen_alcohol
14.35219125
vioscreen_alcohol_servings
1.0042200000000001
vioscreen_alphacar
5612.691438
vioscreen_alphtoce
9.246987372000001
vioscreen_alphtoco
8.256274749
vioscreen_arginine
4.407698456
vioscreen_ash
27.03715486
vioscreen_aspartam
0.0
vioscreen_aspartic
7.975425407
vioscreen_avcarb
186.547774
vioscreen_bcodeid
Not provided
vioscreen_betacar
16980.74521
vioscreen_betacryp
18.88931534
vioscreen_betaine
341.8931721
vioscreen_betatoco
0.242739764
vioscreen_biochana
0.008520548000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
293.2994221
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.72189
vioscreen_calcium_servings
4.81811
vioscreen_calories
2186.097603
vioscreen_carbo
218.14058219999998
vioscreen_cholest
414.39550510000004
vioscreen_choline
529.1827483
vioscreen_clac9t11
0.23520545399999998
vioscreen_clat10c12
0.048136991
vioscreen_copper
1.77523277
vioscreen_coumest
0.0047945209999999995
vioscreen_cystine
1.171753431
vioscreen_d_cheese
1.4656164719999998
vioscreen_d_milk
1.0424930940000001
vioscreen_d_tot_soym
2.721890217
vioscreen_d_total
2.721890217
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.176520528
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.0370409819999997
vioscreen_discfat_oil
14.49964148
vioscreen_discfat_sol
63.03748395
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.019479451000000002
vioscreen_f_nj_citmlb
0.017999999
vioscreen_f_nj_other
0.10767123099999999
vioscreen_f_nj_total
0.125698633
vioscreen_f_other
0.10767123099999999
vioscreen_f_total
0.127178088
vioscreen_fat
96.70285745
vioscreen_fiber
31.5950396
vioscreen_fibh2o
7.845396779
vioscreen_fibinso
23.85073844
vioscreen_finished
9/3/15
vioscreen_fish_servings
0.57731
vioscreen_fol_deqv
479.09267980000004
vioscreen_fol_nat
454.7134846
vioscreen_fol_syn
14.31501365
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.3
vioscreen_fructose
13.35668477
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.913123311
vioscreen_g_total
6.250383936
vioscreen_g_whl
5.337260542
vioscreen_galactos
0.39638354200000003
vioscreen_gammtoco
8.747343884
vioscreen_gender
false
vioscreen_genistn
0.24567124899999998
vioscreen_glac
86.78365796
vioscreen_gltc
99.64121361
vioscreen_glucose
14.55407748
vioscreen_glutamic
17.2116425
vioscreen_glycine
3.167287832
vioscreen_glycitn
0.050657534000000004
vioscreen_grams
3536.465068
vioscreen_hei2010_dairy
9.6
vioscreen_hei2010_empty_calories
13.1
vioscreen_hei2010_fatty_acids
0.2
vioscreen_hei2010_fruit
0.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.4
vioscreen_hei2010_sea_foods_plant_protiens
2.3
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.7
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.4
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
8.2
vioscreen_hei_milk
9.6
vioscreen_hei_non_juice_frt
0.7
vioscreen_hei_oils
5.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
53.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.420164678
vioscreen_inositol
0.07652054900000001
vioscreen_iron
13.63517899
vioscreen_isoleuc
4.039752783
vioscreen_isomalt
0.0
vioscreen_joules
9146.628767
vioscreen_juice_servings
0.00299
vioscreen_lactitol
0.0
vioscreen_lactose
18.18854746
vioscreen_legumes
0.096136987
vioscreen_leucine
6.846849582999999
vioscreen_line_gi
497.5625
vioscreen_low_fat_dairy_serving
0.2257
vioscreen_lutzeax
10503.63699
vioscreen_lycopene
3560.9794520000005
vioscreen_lysine
6.12380739
vioscreen_m_egg
1.0342191509999998
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.079150683
vioscreen_m_meat
2.416958911
vioscreen_m_mpf
2.963917688
vioscreen_m_nutsd
0.089041096
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.07117808099999999
vioscreen_m_soy
0.004821918
vioscreen_magnes
452.8695205
vioscreen_maltitol
0.0
vioscreen_maltose
4.602767484
vioscreen_mangan
8.680026621
vioscreen_mannitol
0.48430134
vioscreen_methhis3
11.78487666
vioscreen_methion
1.950876565
vioscreen_mfa141
0.25857535600000003
vioscreen_mfa161
2.086465747
vioscreen_mfa181
29.99978061
vioscreen_mfa201
0.35210964299999997
vioscreen_mfa221
0.071041097
vioscreen_mfatot
33.04624358
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.256274749
vioscreen_nccglbr
141.75297519999998
vioscreen_nccglgr
99.14174872
vioscreen_niacin
20.64561617
vioscreen_niacineq
37.44936858
vioscreen_nitrogen
15.38265866
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.152383548
vioscreen_oxalic
439.417851
vioscreen_oxalicm
433.8679795
vioscreen_pantothe
6.625014715
vioscreen_pectins
5.27202717
vioscreen_pfa182
12.34608439
vioscreen_pfa183
1.949040996
vioscreen_pfa184
0.016821918999999998
vioscreen_pfa204
0.153205474
vioscreen_pfa205
0.050493152
vioscreen_pfa225
0.025726026000000003
vioscreen_pfa226
0.110356171
vioscreen_pfatot
14.76750589
vioscreen_phenylal
3.94169855
vioscreen_phosphor
1827.4845890000001
vioscreen_phytic
857.1614726
vioscreen_pinitol
0.004465753
vioscreen_potass
4275.062671
vioscreen_procdate
10/28/15
vioscreen_proline
5.93353422
vioscreen_protanim
57.41862693
vioscreen_protein
94.8254923
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.40630351
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
124.0
vioscreen_retinol
653.0298801
vioscreen_rgrain
1.51369863
vioscreen_ribofla
2.398547865
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.0070700000000001
vioscreen_satoco
0.0
vioscreen_selenium
135.57647690000002
vioscreen_serine
4.321150939
vioscreen_sfa100
0.926931554
vioscreen_sfa120
1.0023012759999999
vioscreen_sfa140
4.325013378
vioscreen_sfa160
21.03731673
vioscreen_sfa170
0.1490411
vioscreen_sfa180
8.588547464
vioscreen_sfa200
0.112520547
vioscreen_sfa220
0.087315066
vioscreen_sfa40
1.0403834509999998
vioscreen_sfa60
0.612684861
vioscreen_sfa80
0.44334252799999996
vioscreen_sfatot
39.03265465
vioscreen_sodium
4734.371575
vioscreen_sorbitol
0.356273954
vioscreen_srvid
20608.0
vioscreen_starch
85.03583583
vioscreen_started
9/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.74950503
vioscreen_sweet_servings
0.38719000000000003
vioscreen_tagatose
1.941479325
vioscreen_tfa161t
0.156109588
vioscreen_tfa181t
2.6327668490000002
vioscreen_tfa182t
0.537287715
vioscreen_tgrain
6.03758963
vioscreen_thiamin
1.602438396
vioscreen_threonin
3.4967943999999997
vioscreen_time
32.0
vioscreen_totaltfa
3.6798627460000004
vioscreen_totcla
0.28246577
vioscreen_totfolat
469.02829620000006
vioscreen_totsugar
72.32767016
vioscreen_tryptoph
1.011123365
vioscreen_tyrosine
3.218411548
vioscreen_user_id
20608.0
vioscreen_v_drkgr
0.759917795
vioscreen_v_orange
0.932082168
vioscreen_v_other
1.7390686869999998
vioscreen_v_potato
1.050493214
vioscreen_v_starcy
0.185808218
vioscreen_v_tomato
0.422794541
vioscreen_v_total
5.090164477
vioscreen_valine
4.740931681
vioscreen_veg5_day
7.8
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
10.2
vioscreen_visit
1.0
vioscreen_vita_iu
35171.84932
vioscreen_vita_rae
2302.7417809999997
vioscreen_vita_re
3952.4527399999997
vioscreen_vitb12
5.734081362
vioscreen_vitb6
2.3547120809999997
vioscreen_vitc
108.8355308
vioscreen_vitd
9.426822025
vioscreen_vitd2
0.0
vioscreen_vitd3
9.426822025
vioscreen_vitd_iu
377.072881
vioscreen_vite_iu
12.31123448
vioscreen_vitk
434.3371147
vioscreen_water
3131.919863
vioscreen_weight
Not provided
vioscreen_wgrain
4.5238903310000005
vioscreen_whole_grain_servings
5.33726
vioscreen_xylitol
0.040712328
vioscreen_zinc
14.47117803
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
69.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily