American Gut Project; 10317.000023359
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632675
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-09T19:41:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023359
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23359
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1953.0
bmi
23.8
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
02/03/2015
collection month
February
collection season
Winter
collection time
11:00
collection_timestamp
2015-02-03 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
112.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
fcfed74ba794a4a1573c4a38e478857432b06467e40df539f7d7bfc3b8303e50789ccb7a1b2c4939823787bce2f0eb4fe6ea1378905d1b9c4937f488724a11b5
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
41.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.1
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023359
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NJ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
ad80917fc1d0363d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.632958901
vioscreen_a_cal
76.16972389
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.976411333
vioscreen_addsugar
39.46151006
vioscreen_adsugtot
35.0210991
vioscreen_age
215.0
vioscreen_alanine
4.075562192
vioscreen_alcohol
9.66180838
vioscreen_alcohol_servings
0.6329600000000001
vioscreen_alphacar
1283.3566779999999
vioscreen_alphtoce
11.95780715
vioscreen_alphtoco
10.62717988
vioscreen_arginine
4.822001084
vioscreen_ash
21.24342626
vioscreen_aspartam
10.70342466
vioscreen_aspartic
8.072410103
vioscreen_avcarb
201.350214
vioscreen_bcodeid
Not provided
vioscreen_betacar
7954.713014
vioscreen_betacryp
157.90068490000002
vioscreen_betaine
82.41015625
vioscreen_betatoco
0.29479453699999997
vioscreen_biochana
0.018821917
vioscreen_bmi
Not provided
vioscreen_caffeine
92.72632706
vioscreen_calcium
true
vioscreen_calcium_avg
71.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
2
vioscreen_calcium_from_dairy_servings
1.89515
vioscreen_calcium_servings
3.7486599999999997
vioscreen_calories
1815.7261989999997
vioscreen_carbo
223.94828769999998
vioscreen_cholest
256.3015411
vioscreen_choline
400.3336473
vioscreen_clac9t11
0.059698638
vioscreen_clat10c12
0.014958906000000001
vioscreen_copper
1.4543562380000001
vioscreen_coumest
0.022931507
vioscreen_cystine
0.9826025559999999
vioscreen_d_cheese
0.188575347
vioscreen_d_milk
1.332273969
vioscreen_d_tot_soym
1.895150799
vioscreen_d_total
1.895150799
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.217890408
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.747534347
vioscreen_discfat_oil
26.8877515
vioscreen_discfat_sol
19.81052413
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0018630139999999999
vioscreen_f_citmlb
0.522739734
vioscreen_f_nj_citmlb
0.408356215
vioscreen_f_nj_other
0.88723295
vioscreen_f_nj_total
1.295643762
vioscreen_f_other
0.88723295
vioscreen_f_total
1.4099999
vioscreen_fat
62.54605629
vioscreen_fiber
22.44224904
vioscreen_fibh2o
5.455753358
vioscreen_fibinso
16.98164464
vioscreen_finished
2/2/15
vioscreen_fish_servings
2.9205799999999997
vioscreen_fol_deqv
397.3382277
vioscreen_fol_nat
296.5664598
vioscreen_fol_syn
59.24616331
vioscreen_formontn
0.0032328770000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.09863
vioscreen_frt5_day
2.1
vioscreen_frtsumm
2.8
vioscreen_fructose
22.37991626
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.705479452
vioscreen_g_total
4.248054567
vioscreen_g_whl
0.542575366
vioscreen_galactos
0.631479467
vioscreen_gammtoco
10.78186269
vioscreen_gender
false
vioscreen_genistn
0.393123261
vioscreen_glac
94.65840111
vioscreen_gltc
103.0593964
vioscreen_glucose
24.64337008
vioscreen_glutamic
15.84956255
vioscreen_glycine
3.5061924760000003
vioscreen_glycitn
0.056794519
vioscreen_grams
2935.601712
vioscreen_hei2010_dairy
8.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.6
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.0
vioscreen_hei2010_score
78.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.2
vioscreen_hei_score
81.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
2.290657441
vioscreen_inositol
0.176986297
vioscreen_iron
18.37386424
vioscreen_isoleuc
3.821341569
vioscreen_isomalt
0.0
vioscreen_joules
7596.993836
vioscreen_juice_servings
0.22876999999999997
vioscreen_lactitol
0.0
vioscreen_lactose
22.19284969
vioscreen_legumes
0.199260283
vioscreen_leucine
6.618083127999999
vioscreen_line_gi
486.0108733
vioscreen_low_fat_dairy_serving
1.6541599999999999
vioscreen_lutzeax
6332.411644
vioscreen_lycopene
10902.67123
vioscreen_lysine
6.015616305
vioscreen_m_egg
0.6176986489999999
vioscreen_m_fish_hi
0.823561661
vioscreen_m_fish_lo
0.840849409
vioscreen_m_frank
0.45509589200000006
vioscreen_m_meat
1.231890451
vioscreen_m_mpf
4.658411146000001
vioscreen_m_nutsd
1.143999993
vioscreen_m_organ
0.0
vioscreen_m_poult
1.3070959640000002
vioscreen_m_soy
0.01350685
vioscreen_magnes
351.7998502
vioscreen_maltitol
0.0
vioscreen_maltose
2.054164437
vioscreen_mangan
4.384685025
vioscreen_mannitol
0.433671256
vioscreen_methhis3
15.771038899999999
vioscreen_methion
1.964301457
vioscreen_mfa141
0.053890411
vioscreen_mfa161
0.9256165390000001
vioscreen_mfa181
23.37616385
vioscreen_mfa201
0.38361640799999996
vioscreen_mfa221
0.125753418
vioscreen_mfatot
25.03277237
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.53085135
vioscreen_nccglbr
158.2218001
vioscreen_nccglgr
110.6837436
vioscreen_niacin
19.15145013
vioscreen_niacineq
34.34718268
vioscreen_nitrogen
13.55005351
vioscreen_non_fried_fish_servings
2.9205799999999997
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.076054821
vioscreen_oxalic
385.8976027
vioscreen_oxalicm
407.20188360000003
vioscreen_pantothe
5.487754507999999
vioscreen_pectins
4.057123555
vioscreen_pfa182
13.19139822
vioscreen_pfa183
1.638931734
vioscreen_pfa184
0.029561643999999998
vioscreen_pfa204
0.14183562800000002
vioscreen_pfa205
0.111972589
vioscreen_pfa225
0.049287675999999996
vioscreen_pfa226
0.246931499
vioscreen_pfatot
15.48778494
vioscreen_phenylal
3.76298594
vioscreen_phosphor
1474.921404
vioscreen_phytic
634.7786815000001
vioscreen_pinitol
0.002356164
vioscreen_potass
3528.4952049999997
vioscreen_procdate
10/28/15
vioscreen_proline
5.368273424
vioscreen_protanim
57.43507063
vioscreen_protein
83.62368365
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.18318172
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
576.0
vioscreen_retinol
373.72106160000004
vioscreen_rgrain
3.39142431
vioscreen_ribofla
1.893479104
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.87227
vioscreen_satoco
0.213643845
vioscreen_selenium
110.9364726
vioscreen_serine
4.057452308999999
vioscreen_sfa100
0.189780792
vioscreen_sfa120
0.387095872
vioscreen_sfa140
1.044767197
vioscreen_sfa160
9.498850867
vioscreen_sfa170
0.068219182
vioscreen_sfa180
4.301315348999999
vioscreen_sfa200
0.179342463
vioscreen_sfa220
0.228794547
vioscreen_sfa40
0.213726033
vioscreen_sfa60
0.097205468
vioscreen_sfa80
0.09331506199999999
vioscreen_sfatot
16.56575343
vioscreen_sodium
3896.3164380000003
vioscreen_sorbitol
1.287670982
vioscreen_srvid
17046.0
vioscreen_starch
76.14948095
vioscreen_started
2/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.3632866
vioscreen_sweet_servings
0.73412
vioscreen_tagatose
3.4823289010000003
vioscreen_tfa161t
0.032986306
vioscreen_tfa181t
1.656219232
vioscreen_tfa182t
0.304301432
vioscreen_tgrain
4.350356178
vioscreen_thiamin
1.263314778
vioscreen_threonin
3.3030691489999997
vioscreen_time
34.0
vioscreen_totaltfa
2.014438075
vioscreen_totcla
0.075397272
vioscreen_totfolat
355.8122646
vioscreen_totsugar
105.42813570000001
vioscreen_tryptoph
0.911287741
vioscreen_tyrosine
2.991342372
vioscreen_user_id
17046.0
vioscreen_v_drkgr
0.549506869
vioscreen_v_orange
0.306821912
vioscreen_v_other
1.205616572
vioscreen_v_potato
0.315369865
vioscreen_v_starcy
0.139095881
vioscreen_v_tomato
0.65578074
vioscreen_v_total
3.172410437
vioscreen_valine
4.459918129
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.3
vioscreen_visit
1.0
vioscreen_vita_iu
15706.101369999998
vioscreen_vita_rae
1096.666267
vioscreen_vita_re
1819.6118149999998
vioscreen_vitb12
5.043835616
vioscreen_vitb6
1.941452235
vioscreen_vitc
128.6748395
vioscreen_vitd
8.86687714
vioscreen_vitd2
0.00109589
vioscreen_vitd3
8.865808272999999
vioscreen_vitd_iu
354.6750856
vioscreen_vite_iu
15.90937099
vioscreen_vitk
280.5908604
vioscreen_water
2621.921575
vioscreen_weight
Not provided
vioscreen_wgrain
0.958931366
vioscreen_whole_grain_servings
0.5425800000000001
vioscreen_xylitol
0.042328774000000007
vioscreen_zinc
11.22457459
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily