American Gut Project; 10317.000020573
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632927
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020573
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20573
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
22.31
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-04-28
collection month
April
collection season
Spring
collection time
11:00
collection_timestamp
2015-04-28 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
197.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Not provided
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Daily
homecooked_meals_frequency
Daily
host common name
human
host subject id
d6eb05ff5c24134ffcf240ad3271fde0bf38fc4ca610405fa0a8c8a10c9a92c2d830d276142241555958b0196c96e65f4e1828373085d7c38356ba6248c6b9db
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not provided
longitude
-0.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
Not provided
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020573
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
698ca5998668727b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.641726016
vioscreen_a_cal
76.09734589
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.899753351
vioscreen_addsugar
13.30090299
vioscreen_adsugtot
10.6775618
vioscreen_age
215.0
vioscreen_alanine
9.095588747
vioscreen_alcohol
9.748219446
vioscreen_alcohol_servings
0.64173
vioscreen_alphacar
1762.517123
vioscreen_alphtoce
19.11150872
vioscreen_alphtoco
17.52849288
vioscreen_arginine
10.66413808
vioscreen_ash
35.75473834
vioscreen_aspartam
0.0
vioscreen_aspartic
15.72136933
vioscreen_avcarb
87.63452483
vioscreen_bcodeid
Not provided
vioscreen_betacar
14081.8863
vioscreen_betacryp
101.27742940000002
vioscreen_betaine
116.0186751
vioscreen_betatoco
0.370438375
vioscreen_biochana
0.012328767
vioscreen_bmi
Not provided
vioscreen_caffeine
355.3107663
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.43328999999999995
vioscreen_calcium_servings
2.3864099999999997
vioscreen_calories
2638.181849
vioscreen_carbo
109.5813784
vioscreen_cholest
1287.1293660000001
vioscreen_choline
1202.414041
vioscreen_clac9t11
0.26838358
vioscreen_clat10c12
0.083506859
vioscreen_copper
2.809397407
vioscreen_coumest
0.178465752
vioscreen_cystine
2.159150759
vioscreen_d_cheese
0.267369874
vioscreen_d_milk
0.165863016
vioscreen_d_tot_soym
0.433287655
vioscreen_d_total
0.433287655
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.332136975
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.372740194
vioscreen_discfat_oil
37.13093429
vioscreen_discfat_sol
78.3395869
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002
vioscreen_f_citmlb
0.185972595
vioscreen_f_nj_citmlb
0.172958897
vioscreen_f_nj_other
1.659753251
vioscreen_f_nj_total
1.832712168
vioscreen_f_other
1.709342225
vioscreen_f_total
1.895342265
vioscreen_fat
169.48340109999998
vioscreen_fiber
21.94693252
vioscreen_fibh2o
6.730466074
vioscreen_fibinso
15.22134124
vioscreen_finished
3/19/15
vioscreen_fish_servings
8.95904
vioscreen_fol_deqv
506.41896399999996
vioscreen_fol_nat
480.70188360000003
vioscreen_fol_syn
15.11619221
vioscreen_formontn
0.002273973
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.1
vioscreen_frtsumm
3.8
vioscreen_fructose
19.86112345
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.724876759
vioscreen_g_total
0.724876759
vioscreen_g_whl
0.0
vioscreen_galactos
0.13227399
vioscreen_gammtoco
14.023891
vioscreen_gender
false
vioscreen_genistn
0.226164371
vioscreen_glac
25.60413902
vioscreen_gltc
29.44021832
vioscreen_glucose
18.81520494
vioscreen_glutamic
24.76391535
vioscreen_glycine
8.031424577000001
vioscreen_glycitn
0.030739727
vioscreen_grams
3484.3544520000005
vioscreen_hei2010_dairy
1.3
vioscreen_hei2010_empty_calories
14.2
vioscreen_hei2010_fatty_acids
4.7
vioscreen_hei2010_fruit
4.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
59.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
4.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.5
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
54.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
12.8
vioscreen_hei_veg
4.9
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
4.701753465
vioscreen_inositol
0.097369855
vioscreen_iron
16.63139448
vioscreen_isoleuc
7.369752649
vioscreen_isomalt
0.0
vioscreen_joules
11038.16164
vioscreen_juice_servings
0.12523
vioscreen_lactitol
0.0
vioscreen_lactose
1.88046574
vioscreen_legumes
0.03668493
vioscreen_leucine
12.65471292
vioscreen_line_gi
157.7417273
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19111.18493
vioscreen_lycopene
3491.6482880000003
vioscreen_lysine
12.63561644
vioscreen_m_egg
4.042602874
vioscreen_m_fish_hi
2.308493251
vioscreen_m_fish_lo
2.7969863680000002
vioscreen_m_frank
1.7995617169999998
vioscreen_m_meat
7.675123074
vioscreen_m_mpf
15.35000134
vioscreen_m_nutsd
2.186712396
vioscreen_m_organ
0.586547935
vioscreen_m_poult
0.183315079
vioscreen_m_soy
0.002904109
vioscreen_magnes
406.19520550000004
vioscreen_maltitol
0.0
vioscreen_maltose
0.865369739
vioscreen_mangan
3.956931922
vioscreen_mannitol
0.8185204909999999
vioscreen_methhis3
50.14515197
vioscreen_methion
4.1301095619999995
vioscreen_mfa141
0.364273991
vioscreen_mfa161
3.9986301369999997
vioscreen_mfa181
66.32153789
vioscreen_mfa201
0.9831506179999999
vioscreen_mfa221
0.382356116
vioscreen_mfatot
72.33602847
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.52849288
vioscreen_nccglbr
58.05619114
vioscreen_nccglgr
40.60869542
vioscreen_niacin
36.38857556
vioscreen_niacineq
64.784878
vioscreen_nitrogen
25.98493953
vioscreen_non_fried_fish_servings
8.95904
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.403671808
vioscreen_oxalic
645.0830051
vioscreen_oxalicm
702.4375
vioscreen_pantothe
10.18473887
vioscreen_pectins
4.838438436000001
vioscreen_pfa182
21.96378291
vioscreen_pfa183
2.11646578
vioscreen_pfa184
0.087315071
vioscreen_pfa204
0.592219188
vioscreen_pfa205
0.353698605
vioscreen_pfa225
0.11599999999999999
vioscreen_pfa226
0.7311233309999999
vioscreen_pfatot
26.30238121
vioscreen_phenylal
6.872464951
vioscreen_phosphor
2008.6780820000001
vioscreen_phytic
451.3797517
vioscreen_pinitol
0.001095891
vioscreen_potass
4407.438356000001
vioscreen_procdate
10/28/15
vioscreen_proline
7.303122993
vioscreen_protanim
140.0229559
vioscreen_protein
160.1027397
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.08071088
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
519.0
vioscreen_retinol
1673.48476
vioscreen_rgrain
0.543397292
vioscreen_ribofla
3.38923273
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.97011
vioscreen_satoco
0.0
vioscreen_selenium
248.68266269999998
vioscreen_serine
7.525699647000001
vioscreen_sfa100
0.562301385
vioscreen_sfa120
0.646246589
vioscreen_sfa140
3.415945058
vioscreen_sfa160
32.7892043
vioscreen_sfa170
0.25095887899999997
vioscreen_sfa180
14.6277531
vioscreen_sfa200
0.320876741
vioscreen_sfa220
0.415808189
vioscreen_sfa40
0.549452105
vioscreen_sfa60
0.327315072
vioscreen_sfa80
0.20890411
vioscreen_sfatot
54.54110124
vioscreen_sodium
7989.319863
vioscreen_sorbitol
1.685534334
vioscreen_srvid
18345.0
vioscreen_starch
17.08747993
vioscreen_started
3/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.13860231
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
0.23515066899999998
vioscreen_tfa161t
0.15112329800000002
vioscreen_tfa181t
3.5747668960000003
vioscreen_tfa182t
0.463616484
vioscreen_tgrain
0.543397292
vioscreen_thiamin
1.575479251
vioscreen_threonin
6.72761799
vioscreen_time
27.0
vioscreen_totaltfa
4.2189315999999994
vioscreen_totcla
0.349287644
vioscreen_totfolat
495.8180223
vioscreen_totsugar
54.703911600000005
vioscreen_tryptoph
1.702986375
vioscreen_tyrosine
5.59545263
vioscreen_user_id
18345.0
vioscreen_v_drkgr
1.190657608
vioscreen_v_orange
0.355616405
vioscreen_v_other
0.9147945040000001
vioscreen_v_potato
0.064383562
vioscreen_v_starcy
0.032958903
vioscreen_v_tomato
0.22802738600000003
vioscreen_v_total
2.7864936719999998
vioscreen_valine
8.191122646
vioscreen_veg5_day
4.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
30600.87123
vioscreen_vita_rae
2924.633562
vioscreen_vita_re
4175.782877000001
vioscreen_vitb12
19.09161628
vioscreen_vitb6
3.153342051
vioscreen_vitc
97.64937928
vioscreen_vitd
19.01813731
vioscreen_vitd2
0.000438356
vioscreen_vitd3
19.01772662
vioscreen_vitd_iu
760.7254922999999
vioscreen_vite_iu
26.12498395
vioscreen_vitk
807.1171232999999
vioscreen_water
3038.5657530000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.040438359
vioscreen_zinc
21.1546875
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never