American Gut Project; 10317.000011281
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632341
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000011281
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000011281
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
21.95
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/06/2015
collection month
January
collection season
Winter
collection time
08:00
collection_timestamp
2015-01-06 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
New England
elevation
21.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
5f88342dcf12c353bc70954d4facca682d7703e8d883476981de5fc527fad9d61443193f8688f6056c3d5bf4a62c6476fe1db0866b585d155dbc4bcc3cf49ef0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
42.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-70.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000011281
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
a82b5c0b78f181fa
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.985753391
vioscreen_a_cal
194.9919949
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.809259953
vioscreen_addsugar
20.33509471
vioscreen_adsugtot
16.13668531
vioscreen_age
215.0
vioscreen_alanine
2.720383736
vioscreen_alcohol
27.85600118
vioscreen_alcohol_servings
1.98575
vioscreen_alphacar
595.8477312000001
vioscreen_alphtoce
7.270685065
vioscreen_alphtoco
6.766904564
vioscreen_arginine
3.065917634
vioscreen_ash
14.32893033
vioscreen_aspartam
0.0
vioscreen_aspartic
5.197150243
vioscreen_avcarb
84.41499358
vioscreen_bcodeid
Not provided
vioscreen_betacar
5020.250342
vioscreen_betacryp
105.4337222
vioscreen_betaine
100.4718429
vioscreen_betatoco
0.14605478800000002
vioscreen_biochana
0.009780822
vioscreen_bmi
Not provided
vioscreen_caffeine
272.9363442
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
0.34099
vioscreen_calcium_servings
1.32592
vioscreen_calories
1063.797945
vioscreen_carbo
103.2306935
vioscreen_cholest
117.84699270000002
vioscreen_choline
210.62234590000003
vioscreen_clac9t11
0.036465752000000004
vioscreen_clat10c12
0.00830137
vioscreen_copper
0.930849258
vioscreen_coumest
0.142109597
vioscreen_cystine
0.5835890260000001
vioscreen_d_cheese
0.332684932
vioscreen_d_milk
0.00830137
vioscreen_d_tot_soym
0.340986299
vioscreen_d_total
0.340986299
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.21145205600000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.79136988
vioscreen_discfat_oil
8.290492562
vioscreen_discfat_sol
12.65265679
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001287671
vioscreen_f_citmlb
0.011506849
vioscreen_f_nj_citmlb
0.00539726
vioscreen_f_nj_other
1.744191794
vioscreen_f_nj_total
1.7496163980000001
vioscreen_f_other
1.744191794
vioscreen_f_total
1.7556986769999998
vioscreen_fat
31.86304313
vioscreen_fiber
18.81635542
vioscreen_fibh2o
6.016684503
vioscreen_fibinso
12.93211018
vioscreen_finished
1/6/15
vioscreen_fish_servings
3.11558
vioscreen_fol_deqv
268.91812930000003
vioscreen_fol_nat
223.34655389999998
vioscreen_fol_syn
26.80197453
vioscreen_formontn
0.0027397259999999996
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.5
vioscreen_fructose
19.38561644
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.9078082359999999
vioscreen_g_total
1.61167126
vioscreen_g_whl
0.7038356
vioscreen_galactos
0.227452066
vioscreen_gammtoco
4.383726188
vioscreen_gender
false
vioscreen_genistn
0.14597261
vioscreen_glac
36.26186055
vioscreen_gltc
40.1791524
vioscreen_glucose
17.06388993
vioscreen_glutamic
8.995480387999999
vioscreen_glycine
2.48506846
vioscreen_glycitn
0.021178081
vioscreen_grams
3226.923288
vioscreen_hei2010_dairy
2.5
vioscreen_hei2010_empty_calories
15.5
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.5
vioscreen_hei_sat_fat
9.2
vioscreen_hei_score
62.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
10.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.2
vioscreen_height
Not provided
vioscreen_histidin
1.4389862480000002
vioscreen_inositol
0.034712329
vioscreen_iron
6.808191085
vioscreen_isoleuc
2.282109676
vioscreen_isomalt
0.0
vioscreen_joules
4450.930822
vioscreen_juice_servings
0.01222
vioscreen_lactitol
0.0
vioscreen_lactose
0.41638355
vioscreen_legumes
0.0
vioscreen_leucine
3.832575383
vioscreen_line_gi
196.0088827
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6697.891781
vioscreen_lycopene
3982.065068
vioscreen_lysine
3.793890464
vioscreen_m_egg
0.018767123
vioscreen_m_fish_hi
1.136520595
vioscreen_m_fish_lo
0.638876719
vioscreen_m_frank
0.20586301199999998
vioscreen_m_meat
1.262493144
vioscreen_m_mpf
4.189479211
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.94569861
vioscreen_m_soy
0.001041096
vioscreen_magnes
220.60453769999998
vioscreen_maltitol
0.0
vioscreen_maltose
2.48002729
vioscreen_mangan
2.795972683
vioscreen_mannitol
0.58583558
vioscreen_methhis3
16.0500816
vioscreen_methion
1.200547895
vioscreen_mfa141
0.067917811
vioscreen_mfa161
0.691890434
vioscreen_mfa181
10.76315015
vioscreen_mfa201
0.281041122
vioscreen_mfa221
0.18191781199999998
vioscreen_mfatot
12.14953312
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
6.766904564
vioscreen_nccglbr
65.33840432
vioscreen_nccglgr
45.70333904
vioscreen_niacin
15.06052012
vioscreen_niacineq
24.02690497
vioscreen_nitrogen
8.628766453999999
vioscreen_non_fried_fish_servings
3.11558
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.225917868
vioscreen_oxalic
295.57866010000004
vioscreen_oxalicm
322.4796019
vioscreen_pantothe
3.690931346
vioscreen_pectins
3.760246883
vioscreen_pfa182
5.143726255
vioscreen_pfa183
0.670712406
vioscreen_pfa184
0.042739727000000005
vioscreen_pfa204
0.094191784
vioscreen_pfa205
0.143835616
vioscreen_pfa225
0.065753425
vioscreen_pfa226
0.30413697100000003
vioscreen_pfatot
6.551369863
vioscreen_phenylal
2.095396946
vioscreen_phosphor
696.7617295
vioscreen_phytic
358.23422519999997
vioscreen_pinitol
0.011369863000000001
vioscreen_potass
2319.288356
vioscreen_procdate
10/28/15
vioscreen_proline
2.674739806
vioscreen_protanim
36.83013699
vioscreen_protein
53.21597817
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.38624652
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
652.0
vioscreen_retinol
91.77095462
vioscreen_rgrain
0.952657538
vioscreen_ribofla
1.14983554
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.38384
vioscreen_satoco
0.0
vioscreen_selenium
67.8119756
vioscreen_serine
2.1825207019999997
vioscreen_sfa100
0.13238356099999998
vioscreen_sfa120
0.15986302
vioscreen_sfa140
0.879835657
vioscreen_sfa160
5.539808634
vioscreen_sfa170
0.083506843
vioscreen_sfa180
2.2240001940000003
vioscreen_sfa200
0.07726027099999999
vioscreen_sfa220
0.113643834
vioscreen_sfa40
0.16120548
vioscreen_sfa60
0.082493152
vioscreen_sfa80
0.058054796
vioscreen_sfatot
9.751889582
vioscreen_sodium
2201.726541
vioscreen_sorbitol
1.472273986
vioscreen_srvid
16776.0
vioscreen_starch
22.40490422
vioscreen_started
1/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.76224583
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.028465752
vioscreen_tfa161t
0.039315067
vioscreen_tfa181t
0.75460272
vioscreen_tfa182t
0.12975341599999998
vioscreen_tgrain
1.479315102
vioscreen_thiamin
0.670438375
vioscreen_threonin
2.033725853
vioscreen_time
20.0
vioscreen_totaltfa
0.967917748
vioscreen_totcla
0.045041097
vioscreen_totfolat
250.1485659
vioscreen_totsugar
51.10008027
vioscreen_tryptoph
0.538383588
vioscreen_tyrosine
1.666959078
vioscreen_user_id
16776.0
vioscreen_v_drkgr
0.892821931
vioscreen_v_orange
0.09841095400000001
vioscreen_v_other
1.0060822790000001
vioscreen_v_potato
0.043123287
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.399397299
vioscreen_v_total
2.439808299
vioscreen_valine
2.538575055
vioscreen_veg5_day
4.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.9
vioscreen_visit
1.0
vioscreen_vita_iu
9256.941095999999
vioscreen_vita_rae
539.3449486000001
vioscreen_vita_re
986.9203767000001
vioscreen_vitb12
2.8790413630000002
vioscreen_vitb6
1.16983559
vioscreen_vitc
81.5898598
vioscreen_vitd
6.270492428
vioscreen_vitd2
0.0
vioscreen_vitd3
6.270492428
vioscreen_vitd_iu
250.81969709999998
vioscreen_vite_iu
10.07142485
vioscreen_vitk
282.4605522
vioscreen_water
3000.34863
vioscreen_weight
Not provided
vioscreen_wgrain
0.526684947
vioscreen_whole_grain_servings
0.7038399999999999
vioscreen_xylitol
0.027917815
vioscreen_zinc
6.372519799
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
54.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)