American Gut Project; 10317.000023823
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632693
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023823
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23823
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1980.0
bmi
21.7
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-18
collection month
April
collection season
Spring
collection time
10:00
collection_timestamp
2015-04-18 10:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
17.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
554200f713707d52c1cb6f32f1cc6cdedc6019134df39b486fcc9f09b6e80b51c7e9bef8b69aeee0478845c697d901c44fc73b0ceecc907cf01efba3571df310
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
42.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-71.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023823
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
a3efe9295e02ebae
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.63353422
vioscreen_a_cal
89.38879495
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.23213827
vioscreen_addsugar
66.21062714
vioscreen_adsugtot
59.70997432
vioscreen_age
215.0
vioscreen_alanine
6.282575717
vioscreen_alcohol
9.224656865
vioscreen_alcohol_servings
0.63353
vioscreen_alphacar
436.499101
vioscreen_alphtoce
22.71594339
vioscreen_alphtoco
20.32153521
vioscreen_arginine
8.003533016
vioscreen_ash
33.19690443
vioscreen_aspartam
15.97526086
vioscreen_aspartic
12.51068466
vioscreen_avcarb
277.2773545
vioscreen_bcodeid
Not provided
vioscreen_betacar
6923.229452
vioscreen_betacryp
356.4769692
vioscreen_betaine
268.392744
vioscreen_betatoco
0.945287668
vioscreen_biochana
0.016438355
vioscreen_bmi
Not provided
vioscreen_caffeine
365.0379709
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.48597
vioscreen_calcium_servings
5.12066
vioscreen_calories
2816.564726
vioscreen_carbo
326.3938998
vioscreen_cholest
257.8391053
vioscreen_choline
524.2785531000001
vioscreen_clac9t11
0.104191777
vioscreen_clat10c12
0.024164385
vioscreen_copper
2.438575055
vioscreen_coumest
0.273397242
vioscreen_cystine
1.581150672
vioscreen_d_cheese
1.281643802
vioscreen_d_milk
0.204684929
vioscreen_d_tot_soym
2.4859726159999997
vioscreen_d_total
2.4859726159999997
vioscreen_d_yogurt
0.999589058
vioscreen_daidzein
2.323479807
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.404164437
vioscreen_discfat_oil
43.09882545
vioscreen_discfat_sol
40.83065871
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0009315069999999999
vioscreen_f_citmlb
1.193726088
vioscreen_f_nj_citmlb
1.189671263
vioscreen_f_nj_other
1.4630411230000002
vioscreen_f_nj_total
2.652712469
vioscreen_f_other
1.4630411230000002
vioscreen_f_total
2.65676721
vioscreen_fat
112.9744328
vioscreen_fiber
49.066936
vioscreen_fibh2o
14.94594392
vioscreen_fibinso
34.35991813
vioscreen_finished
3/18/15
vioscreen_fish_servings
2.05096
vioscreen_fol_deqv
663.4778253
vioscreen_fol_nat
538.5698629999999
vioscreen_fol_syn
73.42084759999999
vioscreen_formontn
0.009506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.06575
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.3
vioscreen_fructose
29.11527986
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.884602753
vioscreen_g_total
6.588740101
vioscreen_g_whl
4.704137013
vioscreen_galactos
1.4368495159999999
vioscreen_gammtoco
19.75989137
vioscreen_gender
false
vioscreen_genistn
2.55304139
vioscreen_glac
126.9160638
vioscreen_gltc
143.73517769999998
vioscreen_glucose
24.42920858
vioscreen_glutamic
25.66233144
vioscreen_glycine
6.012575582999999
vioscreen_glycitn
1.081945299
vioscreen_grams
5309.973973
vioscreen_hei2010_dairy
6.8
vioscreen_hei2010_empty_calories
18.4
vioscreen_hei2010_fatty_acids
7.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
85.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.6
vioscreen_hei_score
82.5
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
16.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
3.5484652580000002
vioscreen_inositol
0.132246597
vioscreen_iron
20.00243472
vioscreen_isoleuc
5.831561027999999
vioscreen_isomalt
0.0
vioscreen_joules
11784.50822
vioscreen_juice_servings
0.00811
vioscreen_lactitol
0.0
vioscreen_lactose
18.31780822
vioscreen_legumes
0.333616429
vioscreen_leucine
10.11183781
vioscreen_line_gi
678.3638271000001
vioscreen_low_fat_dairy_serving
1.76132
vioscreen_lutzeax
8607.839726
vioscreen_lycopene
8307.49863
vioscreen_lysine
8.650904993
vioscreen_m_egg
0.30832877
vioscreen_m_fish_hi
0.665205488
vioscreen_m_fish_lo
0.503616458
vioscreen_m_frank
0.34523286200000003
vioscreen_m_meat
3.4054797860000003
vioscreen_m_mpf
5.98104131
vioscreen_m_nutsd
4.444603154
vioscreen_m_organ
0.0
vioscreen_m_poult
1.061589071
vioscreen_m_soy
0.34265753299999996
vioscreen_magnes
617.246661
vioscreen_maltitol
0.0
vioscreen_maltose
4.457369702
vioscreen_mangan
7.592602205
vioscreen_mannitol
0.897972546
vioscreen_methhis3
23.18082192
vioscreen_methion
2.854137347
vioscreen_mfa141
0.146273971
vioscreen_mfa161
1.388602813
vioscreen_mfa181
42.16928778
vioscreen_mfa201
0.59369858
vioscreen_mfa221
0.10917807800000001
vioscreen_mfatot
44.85225278
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
20.31471265
vioscreen_nccglbr
191.4667594
vioscreen_nccglgr
133.9330693
vioscreen_niacin
35.30925995
vioscreen_niacineq
58.62482342
vioscreen_nitrogen
22.39495666
vioscreen_non_fried_fish_servings
2.05096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.289808801
vioscreen_oxalic
467.74345030000006
vioscreen_oxalicm
489.9327483
vioscreen_pantothe
9.748740502
vioscreen_pectins
7.939342091
vioscreen_pfa182
23.90353703
vioscreen_pfa183
1.936219599
vioscreen_pfa184
0.025041094
vioscreen_pfa204
0.138356164
vioscreen_pfa205
0.08638356400000001
vioscreen_pfa225
0.052465752000000004
vioscreen_pfa226
0.190602739
vioscreen_pfatot
26.42145762
vioscreen_phenylal
5.9294253
vioscreen_phosphor
2261.173973
vioscreen_phytic
1620.4736300000002
vioscreen_pinitol
0.022657536000000002
vioscreen_potass
5003.969863
vioscreen_procdate
10/28/15
vioscreen_proline
8.862411039
vioscreen_protanim
76.27862265
vioscreen_protein
136.6833904
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
60.39123502
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
520.0
vioscreen_retinol
271.1943921
vioscreen_rgrain
2.465123341
vioscreen_ribofla
3.026437754
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.15304
vioscreen_satoco
0.014931506
vioscreen_selenium
202.9323416
vioscreen_serine
6.303177841
vioscreen_sfa100
0.441589021
vioscreen_sfa120
0.757917848
vioscreen_sfa140
2.516355917
vioscreen_sfa160
17.87287698
vioscreen_sfa170
0.16367124800000002
vioscreen_sfa180
7.457835242000001
vioscreen_sfa200
0.413753395
vioscreen_sfa220
0.722082269
vioscreen_sfa40
0.549095844
vioscreen_sfa60
0.23860273
vioscreen_sfa80
0.228328757
vioscreen_sfatot
32.17522742
vioscreen_sodium
4892.334589
vioscreen_sorbitol
1.3366027
vioscreen_srvid
18344.0
vioscreen_starch
108.4442102
vioscreen_started
3/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
63.95611087
vioscreen_sweet_servings
0.7631399999999999
vioscreen_tagatose
8.790246415
vioscreen_tfa161t
0.077315072
vioscreen_tfa181t
1.8318633619999998
vioscreen_tfa182t
0.439643839
vioscreen_tgrain
7.361096024
vioscreen_thiamin
2.3390409290000003
vioscreen_threonin
4.906575408999999
vioscreen_time
25.0
vioscreen_totaltfa
2.463698463
vioscreen_totcla
0.129178097
vioscreen_totfolat
611.9905394
vioscreen_totsugar
143.5027504
vioscreen_tryptoph
1.401287758
vioscreen_tyrosine
4.639396939
vioscreen_user_id
18344.0
vioscreen_v_drkgr
1.610575302
vioscreen_v_orange
0.147616441
vioscreen_v_other
0.7165753090000001
vioscreen_v_potato
0.73016441
vioscreen_v_starcy
0.241808204
vioscreen_v_tomato
0.404849285
vioscreen_v_total
3.851671193
vioscreen_valine
6.916603568999999
vioscreen_veg5_day
6.0
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
7.7
vioscreen_visit
1.0
vioscreen_vita_iu
13100.20137
vioscreen_vita_rae
881.1699486
vioscreen_vita_re
1491.148801
vioscreen_vitb12
6.623040855
vioscreen_vitb6
3.0767942660000003
vioscreen_vitc
291.11984160000003
vioscreen_vitd
5.393232957
vioscreen_vitd2
0.001260274
vioscreen_vitd3
5.39199988
vioscreen_vitd_iu
215.72931830000002
vioscreen_vite_iu
30.28225064
vioscreen_vitk
464.6447774
vioscreen_water
4715.704452
vioscreen_weight
Not provided
vioscreen_wgrain
4.895972683
vioscreen_whole_grain_servings
4.70414
vioscreen_xylitol
0.030520548999999998
vioscreen_zinc
20.10290026
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily