American Gut Project; 10317.000027352
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633195
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:23Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027352
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27352
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by an alternative medicine practitioner
birth year
1969.0
bmi
20.18
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-04-28
collection month
April
collection season
Spring
collection time
06:42
collection_timestamp
2015-04-28 06:42
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
83.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Daily
homecooked_meals_frequency
Daily
host common name
human
host subject id
63dad266fc2b0be9be5a3010d5d23b81360cf8d05ebb0b8602e52d701ab66f8e26fa511ffe1c4b5333a9b2feff076cd753e1cb32f07e655b04476b4201caeaca
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by an alternative medicine practitioner
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
47.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.5
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000027352
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
false
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
391129a1d3810282
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.054575343
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.928684935
vioscreen_addsugar
6.458136906
vioscreen_adsugtot
6.078630003
vioscreen_age
215.0
vioscreen_alanine
6.402903601
vioscreen_alcohol
0.8296438559999999
vioscreen_alcohol_servings
0.05458
vioscreen_alphacar
8504.121233
vioscreen_alphtoce
19.0878331
vioscreen_alphtoco
17.17923133
vioscreen_arginine
7.294986756
vioscreen_ash
21.32619328
vioscreen_aspartam
0.0
vioscreen_aspartic
11.04824553
vioscreen_avcarb
64.11370398
vioscreen_bcodeid
Not provided
vioscreen_betacar
21816.18767
vioscreen_betacryp
174.7388378
vioscreen_betaine
48.41088399
vioscreen_betatoco
0.429123259
vioscreen_biochana
0.029534246
vioscreen_bmi
Not provided
vioscreen_caffeine
106.55999569999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.05781
vioscreen_calcium_servings
1.21156
vioscreen_calories
1820.629452
vioscreen_carbo
84.45109696
vioscreen_cholest
638.7539812000001
vioscreen_choline
675.8979024
vioscreen_clac9t11
0.07690411400000001
vioscreen_clat10c12
0.021123286
vioscreen_copper
4.480026956000001
vioscreen_coumest
0.00109589
vioscreen_cystine
1.458876686
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.05780822
vioscreen_d_tot_soym
0.05780822
vioscreen_d_total
0.05780822
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.358273984
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.402684878
vioscreen_discfat_oil
53.524497
vioscreen_discfat_sol
32.25021939
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.036657535
vioscreen_f_nj_citmlb
0.019150683999999998
vioscreen_f_nj_other
0.125506843
vioscreen_f_nj_total
0.14465752199999998
vioscreen_f_other
0.125506843
vioscreen_f_total
0.162136977
vioscreen_fat
116.93070420000001
vioscreen_fiber
20.33802841
vioscreen_fibh2o
4.878219312
vioscreen_fibinso
15.53945313
vioscreen_finished
4/27/15
vioscreen_fish_servings
5.89635
vioscreen_fol_deqv
506.0499143999999
vioscreen_fol_nat
465.051113
vioscreen_fol_syn
24.10646404
vioscreen_formontn
0.004219178
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.3
vioscreen_fructose
7.5721097760000005
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
1.249452021
vioscreen_g_total
1.249452021
vioscreen_g_whl
0.0
vioscreen_galactos
0.132712335
vioscreen_gammtoco
17.05424738
vioscreen_gender
false
vioscreen_genistn
0.422027421
vioscreen_glac
19.78389073
vioscreen_gltc
25.98328607
vioscreen_glucose
8.604438007999999
vioscreen_glutamic
17.75772822
vioscreen_glycine
6.020355977
vioscreen_glycitn
0.107452058
vioscreen_grams
1979.6426370000001
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.6
vioscreen_hei_grains
1.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
1.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.5
vioscreen_hei_score
55.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.279835657
vioscreen_inositol
0.032575341
vioscreen_iron
15.55370024
vioscreen_isoleuc
5.141944697
vioscreen_isomalt
0.0
vioscreen_joules
7617.515753
vioscreen_juice_servings
0.03499
vioscreen_lactitol
0.0
vioscreen_lactose
0.74490415
vioscreen_legumes
0.01909589
vioscreen_leucine
8.721752595
vioscreen_line_gi
226.45128419999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
9361.606849
vioscreen_lycopene
9050.312329
vioscreen_lysine
8.700466208
vioscreen_m_egg
0.897287614
vioscreen_m_fish_hi
3.360082339
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.499534252
vioscreen_m_meat
3.115452095
vioscreen_m_mpf
10.8841924
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
1.6130136990000001
vioscreen_m_poult
2.2961096359999997
vioscreen_m_soy
0.013945206000000002
vioscreen_magnes
286.1097389
vioscreen_maltitol
0.0
vioscreen_maltose
0.312904128
vioscreen_mangan
3.4257538260000002
vioscreen_mannitol
0.40468495
vioscreen_methhis3
35.87380405
vioscreen_methion
2.7956987769999997
vioscreen_mfa141
0.125315073
vioscreen_mfa161
2.20079446
vioscreen_mfa181
49.4440015
vioscreen_mfa201
1.107999953
vioscreen_mfa221
0.669725977
vioscreen_mfatot
53.91819884
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
17.17923133
vioscreen_nccglbr
49.36582834
vioscreen_nccglgr
34.52698791
vioscreen_niacin
35.52867883
vioscreen_niacineq
54.08616224
vioscreen_nitrogen
18.24115208
vioscreen_non_fried_fish_servings
5.89635
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.270849609
vioscreen_oxalic
164.53138909999998
vioscreen_oxalicm
215.96665240000002
vioscreen_pantothe
8.404137682
vioscreen_pectins
5.288575557
vioscreen_pfa182
21.26942557
vioscreen_pfa183
2.536684804
vioscreen_pfa184
0.146109594
vioscreen_pfa204
0.471698625
vioscreen_pfa205
0.451753381
vioscreen_pfa225
0.19942466
vioscreen_pfa226
0.939561567
vioscreen_pfatot
26.48394424
vioscreen_phenylal
4.741260435
vioscreen_phosphor
1363.365753
vioscreen_phytic
407.7206764
vioscreen_pinitol
0.007068493
vioscreen_potass
3319.631164
vioscreen_procdate
10/28/15
vioscreen_proline
5.137342145
vioscreen_protanim
92.99262628
vioscreen_protein
112.6535638
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.66186323
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
457.0
vioscreen_retinol
3297.8613010000004
vioscreen_rgrain
0.982575383
vioscreen_ribofla
2.5904651380000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.24306999999999998
vioscreen_satoco
0.0
vioscreen_selenium
146.0476563
vioscreen_serine
4.9288219710000005
vioscreen_sfa100
0.021013697999999997
vioscreen_sfa120
0.107808215
vioscreen_sfa140
1.120684982
vioscreen_sfa160
17.04221961
vioscreen_sfa170
0.225013712
vioscreen_sfa180
7.4401099639999995
vioscreen_sfa200
0.35169861700000005
vioscreen_sfa220
0.44553423299999995
vioscreen_sfa40
0.009260274
vioscreen_sfa60
0.004712329
vioscreen_sfa80
0.006684931999999999
vioscreen_sfatot
27.20485071
vioscreen_sodium
4951.326712
vioscreen_sorbitol
0.008465753000000001
vioscreen_srvid
18600.0
vioscreen_starch
27.78852205
vioscreen_started
4/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.765861114
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.08484931300000001
vioscreen_tfa181t
2.567123455
vioscreen_tfa182t
0.316739707
vioscreen_tgrain
0.982575383
vioscreen_thiamin
0.911232893
vioscreen_threonin
4.66164417
vioscreen_time
14.0
vioscreen_totaltfa
2.99649307
vioscreen_totcla
0.09964384300000001
vioscreen_totfolat
489.1576199
vioscreen_totsugar
26.55468482
vioscreen_tryptoph
1.1144931740000001
vioscreen_tyrosine
3.7677259469999997
vioscreen_user_id
18600.0
vioscreen_v_drkgr
0.677862967
vioscreen_v_orange
1.5461368930000001
vioscreen_v_other
1.146520578
vioscreen_v_potato
0.12178082400000001
vioscreen_v_starcy
0.030438355
vioscreen_v_tomato
0.511123239
vioscreen_v_total
4.033917487
vioscreen_valine
5.699315737
vioscreen_veg5_day
7.7
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
8.1
vioscreen_visit
1.0
vioscreen_vita_iu
54584.66849
vioscreen_vita_rae
5477.496233
vioscreen_vita_re
7657.132192
vioscreen_vitb12
27.16325985
vioscreen_vitb6
2.7503014969999997
vioscreen_vitc
121.9641909
vioscreen_vitd
16.39701279
vioscreen_vitd2
0.0
vioscreen_vitd3
16.39701279
vioscreen_vitd_iu
655.8805116000001
vioscreen_vite_iu
25.64052333
vioscreen_vitk
435.54845889999996
vioscreen_water
1658.800342
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.020794522
vioscreen_zinc
14.29915186
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never