American Gut Project; 10317.000002193
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632308
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-09T19:40:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000002193
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000002193
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
24.69
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-14
collection month
January
collection season
Winter
collection time
14:10
collection_timestamp
2015-01-14 14:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Not provided
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
908.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
cee6690a302981c368673c75b23f81ee770372edcef515ea79863e203580cbdaefbb0252ef35d664de2d535230cb8af7c2e72398e8d521c535c57c281d9a79b9
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
35.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-83.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000002193
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NC
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
8b524a085b9a9606
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.49805477600000003
vioscreen_a_cal
61.10227419
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.032301477
vioscreen_addsugar
20.29219285
vioscreen_adsugtot
18.43980897
vioscreen_age
215.0
vioscreen_alanine
2.749670912
vioscreen_alcohol
7.636109402000001
vioscreen_alcohol_servings
0.49805
vioscreen_alphacar
489.56875
vioscreen_alphtoce
63.91256421
vioscreen_alphtoco
34.92603007
vioscreen_arginine
4.364766495
vioscreen_ash
15.74485097
vioscreen_aspartam
0.0
vioscreen_aspartic
6.970713158
vioscreen_avcarb
76.86113014
vioscreen_bcodeid
Not provided
vioscreen_betacar
10960.10548
vioscreen_betacryp
227.60010699999998
vioscreen_betaine
58.77476991
vioscreen_betatoco
0.315287676
vioscreen_biochana
0.0032328770000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
30.43876819
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.68685
vioscreen_calcium_servings
3.28131
vioscreen_calories
1175.1916099999999
vioscreen_carbo
100.5033604
vioscreen_cholest
42.50098727
vioscreen_choline
172.00581119999998
vioscreen_clac9t11
0.012136986
vioscreen_clat10c12
0.003589041
vioscreen_copper
1.79263013
vioscreen_coumest
0.000219178
vioscreen_cystine
0.750356178
vioscreen_d_cheese
0.17095890800000002
vioscreen_d_milk
0.017452053999999998
vioscreen_d_tot_soym
0.686849265
vioscreen_d_total
0.686849265
vioscreen_d_yogurt
0.49843833600000004
vioscreen_daidzein
16.02950557
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.90942433
vioscreen_discfat_oil
32.28509471
vioscreen_discfat_sol
5.95978034
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.143397271
vioscreen_f_nj_citmlb
0.13383562300000001
vioscreen_f_nj_other
1.079342526
vioscreen_f_nj_total
1.2132055
vioscreen_f_other
1.079342526
vioscreen_f_total
1.222767117
vioscreen_fat
60.01002783
vioscreen_fiber
23.64300888
vioscreen_fibh2o
5.483699433
vioscreen_fibinso
18.22287832
vioscreen_finished
1/14/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
444.04032530000006
vioscreen_fol_nat
432.19631849999996
vioscreen_fol_syn
6.9594244970000005
vioscreen_formontn
0.000986301
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
2.4
vioscreen_fructose
9.957179072
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.321287683
vioscreen_g_total
1.291452068
vioscreen_g_whl
0.970164427
vioscreen_galactos
0.753150668
vioscreen_gammtoco
7.912110043999999
vioscreen_gender
false
vioscreen_genistn
27.98207673
vioscreen_glac
24.34460081
vioscreen_gltc
28.04213667
vioscreen_glucose
8.544246977
vioscreen_glutamic
12.45109429
vioscreen_glycine
2.553150919
vioscreen_glycitn
4.283205466
vioscreen_grams
3315.350342
vioscreen_hei2010_dairy
4.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.8
vioscreen_hei_meat_beans
5.2
vioscreen_hei_milk
4.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.2
vioscreen_hei_score
74.8
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.8
vioscreen_height
Not provided
vioscreen_histidin
1.591232676
vioscreen_inositol
0.08389041300000001
vioscreen_iron
13.52306962
vioscreen_isoleuc
2.92810995
vioscreen_isomalt
0.0
vioscreen_joules
4916.995204999999
vioscreen_juice_servings
0.019119999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
7.604191861
vioscreen_legumes
0.025123287999999997
vioscreen_leucine
4.916409594
vioscreen_line_gi
284.78125
vioscreen_low_fat_dairy_serving
0.49843999999999994
vioscreen_lutzeax
16053.76164
vioscreen_lycopene
2254.940411
vioscreen_lysine
3.782575048
vioscreen_m_egg
0.131506849
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.018465753
vioscreen_m_meat
0.006520548
vioscreen_m_mpf
0.024986301000000002
vioscreen_m_nutsd
1.117999936
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.15268493
vioscreen_magnes
410.2350599
vioscreen_maltitol
0.0
vioscreen_maltose
0.5433151039999999
vioscreen_mangan
3.253972469
vioscreen_mannitol
0.347287656
vioscreen_methhis3
0.120520542
vioscreen_methion
0.975424738
vioscreen_mfa141
0.012356164
vioscreen_mfa161
0.9550956829999999
vioscreen_mfa181
28.56298427
vioscreen_mfa201
0.28326023
vioscreen_mfa221
0.015150686000000002
vioscreen_mfatot
29.92186162
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
11.97602606
vioscreen_nccglbr
54.03103596
vioscreen_nccglgr
37.7992348
vioscreen_niacin
15.13822105
vioscreen_niacineq
27.73654484
vioscreen_nitrogen
10.93841235
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.654383495
vioscreen_oxalic
489.6635702
vioscreen_oxalicm
503.8510702
vioscreen_pantothe
7.17947881
vioscreen_pectins
5.1123291019999995
vioscreen_pfa182
13.36339897
vioscreen_pfa183
1.64986288
vioscreen_pfa184
0.000438356
vioscreen_pfa204
0.013726028000000001
vioscreen_pfa205
0.000849315
vioscreen_pfa225
0.000547945
vioscreen_pfa226
0.002684932
vioscreen_pfatot
15.05827269
vioscreen_phenylal
3.2116445039999997
vioscreen_phosphor
1082.199743
vioscreen_phytic
1017.86464
vioscreen_pinitol
0.024767123
vioscreen_potass
2939.067466
vioscreen_procdate
10/28/15
vioscreen_proline
3.979479144
vioscreen_protanim
8.75816433
vioscreen_protein
64.24324165
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
55.47761665
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
619.0
vioscreen_retinol
605.3828338999999
vioscreen_rgrain
0.35961642299999996
vioscreen_ribofla
1.570575035
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.8249
vioscreen_satoco
51.0
vioscreen_selenium
35.38375161
vioscreen_serine
3.3371234210000003
vioscreen_sfa100
0.076328769
vioscreen_sfa120
0.101424648
vioscreen_sfa140
0.383643832
vioscreen_sfa160
7.480466074
vioscreen_sfa170
0.027041096
vioscreen_sfa180
1.827013658
vioscreen_sfa200
0.198493163
vioscreen_sfa220
0.241178079
vioscreen_sfa40
0.09854794900000001
vioscreen_sfa60
0.047068494
vioscreen_sfa80
0.034657533
vioscreen_sfatot
10.67660196
vioscreen_sodium
2182.406849
vioscreen_sorbitol
0.39178082200000003
vioscreen_srvid
16872.0
vioscreen_starch
19.44372726
vioscreen_started
1/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.21517953
vioscreen_sweet_servings
0.13151
vioscreen_tagatose
3.5549313060000003
vioscreen_tfa161t
0.009369863
vioscreen_tfa181t
0.135972606
vioscreen_tfa182t
0.124301367
vioscreen_tgrain
0.973917838
vioscreen_thiamin
1.067314921
vioscreen_threonin
2.334137214
vioscreen_time
20.0
vioscreen_totaltfa
0.278027427
vioscreen_totcla
0.015835616
vioscreen_totfolat
439.1558219
vioscreen_totsugar
46.17232984
vioscreen_tryptoph
0.75783566
vioscreen_tyrosine
2.351753465
vioscreen_user_id
16872.0
vioscreen_v_drkgr
1.421479526
vioscreen_v_orange
0.078328768
vioscreen_v_other
1.402876679
vioscreen_v_potato
0.0035342459999999996
vioscreen_v_starcy
0.002410959
vioscreen_v_tomato
0.310438349
vioscreen_v_total
3.219095476
vioscreen_valine
3.1995344610000003
vioscreen_veg5_day
8.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.4
vioscreen_visit
1.0
vioscreen_vita_iu
20880.9274
vioscreen_vita_rae
1548.608733
vioscreen_vita_re
2491.8313359999997
vioscreen_vitb12
0.895506809
vioscreen_vitb6
1.9388768859999999
vioscreen_vitc
170.0178831
vioscreen_vitd
2.699507037
vioscreen_vitd2
0.000273973
vioscreen_vitd3
2.6992329639999997
vioscreen_vitd_iu
107.98028149999999
vioscreen_vite_iu
68.86891053
vioscreen_vitk
735.560274
vioscreen_water
3067.807534
vioscreen_weight
Not provided
vioscreen_wgrain
0.614301373
vioscreen_whole_grain_servings
0.97016
vioscreen_xylitol
0.029315071
vioscreen_zinc
10.63117709
vitamin_b_supplement_frequency
Not provided
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)