153
synthetic construct
Protocols: Sequencing ready synthetic constructs with STR sequences of varying length.The constructs where sequenced as is and following several PCR amplifications. See further details in \Short Tandem Repeat stutter model inferred from direct measurement of in vitro stutter noise\ (https://doi.org/10.1101/065110) The constructs that went through PCR amplification where barcoded in that PCR in a way that over-writes the original barcodes they where synthesized with.
# repeats
15
ENA-FIRST-PUBLIC
2019-01-26T17:02:10Z
ENA-LAST-UPDATE
2019-01-16T16:45:26Z
External Id
SAMEA5226855
INSDC center name
Department of Computer Science and Applied Mathematics, Weizmann Institute of Science
INSDC first public
2019-01-26T17:02:10Z
INSDC last update
2019-01-16T16:45:26Z
INSDC status
public
Submitter Id
E-MTAB-7602:153
broker name
ArrayExpress
cloning plasmid
pIDT-Kan (IDT)
final sequence
AGTACTAAGCAATGACAATGATACGGCGACCACCGAGATCTACACCGGGTACGACACTCTTTCCCTACACGACGCTCTTCCGATCTTCCTAATCTTACGCGGCCATAACtgaCGACTACCGTTGTCCATAGCGATGACACACACACACACACACACACACACACACTCCGCAGTAGTATTGGAGCCGTATGATGGGCTCTTAAAGACTGTCCATGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTATAGATCTCGTATGCCGTCTTCTGCTTGCATTGCAGTACTAA
flanking sequence (left)
CGACTACCGTTGTCCATAGCGATG
flanking sequence (right)
TCCGCAGTAGTATTGGAGCCGTAT
genotype
15
identifier barcode
tga
name of plasmid
SyMS_15AC
repeat type
AC
sample name
E-MTAB-7602:153
scientific_name
synthetic construct
sequencing primer fw (illumina)
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
sequencing primer rev (illumina)
TGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
str (ms) seq
ACACACACACACACACACACACACACACAC