American Gut Project; 10317.000020599
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632932
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020599
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20599
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1980.0
bmi
19.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-22
collection month
April
collection season
Spring
collection time
10:00
collection_timestamp
2015-04-22 10:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
Sweden
country of birth
Sweden
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
5.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Sweden
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
3ee8e8050c724a9e5f0e4b9f2f98c05563b93ff4e8d02ba604abb6003162ee04c170d3182539df5a0671508f879aba57b44358fc3c7bbd1ef48d2834029d3fb5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
57.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
12.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000020599
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Västra Götaland County
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
fc4b1fe34c35f744
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.405260269
vioscreen_a_cal
51.53879495
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.970383401
vioscreen_addsugar
38.111451200000005
vioscreen_adsugtot
33.325754499999995
vioscreen_age
215.0
vioscreen_alanine
4.212247164
vioscreen_alcohol
5.9638083260000005
vioscreen_alcohol_servings
0.40526
vioscreen_alphacar
238.1990796
vioscreen_alphtoce
15.64926156
vioscreen_alphtoco
13.86205453
vioscreen_arginine
5.654493525
vioscreen_ash
22.17071249
vioscreen_aspartam
0.0
vioscreen_aspartic
8.483753612000001
vioscreen_avcarb
156.4856164
vioscreen_bcodeid
Not provided
vioscreen_betacar
2820.5450339999998
vioscreen_betacryp
44.279807899999994
vioscreen_betaine
154.01052009999998
vioscreen_betatoco
0.589698645
vioscreen_biochana
0.003095891
vioscreen_bmi
Not provided
vioscreen_caffeine
327.50939639999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.52126
vioscreen_calcium_servings
3.7957
vioscreen_calories
1936.35976
vioscreen_carbo
178.2575985
vioscreen_cholest
429.89683219999995
vioscreen_choline
488.92803939999993
vioscreen_clac9t11
0.116054786
vioscreen_clat10c12
0.023397262999999998
vioscreen_copper
1.876876706
vioscreen_coumest
0.203616438
vioscreen_cystine
1.063424724
vioscreen_d_cheese
0.387013725
vioscreen_d_milk
1.093616392
vioscreen_d_tot_soym
1.5212603009999999
vioscreen_d_total
1.5212603009999999
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.6615890289999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.570027391
vioscreen_discfat_oil
35.1904939
vioscreen_discfat_sol
41.85950878
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007123289999999999
vioscreen_f_citmlb
0.39090409
vioscreen_f_nj_citmlb
0.27156163
vioscreen_f_nj_other
0.414273991
vioscreen_f_nj_total
0.685835621
vioscreen_f_other
0.414273991
vioscreen_f_total
0.8051506979999999
vioscreen_fat
97.37852098
vioscreen_fiber
21.77208235
vioscreen_fibh2o
6.853589202
vioscreen_fibinso
15.10452028
vioscreen_finished
4/15/15
vioscreen_fish_servings
8.62058
vioscreen_fol_deqv
580.7414384
vioscreen_fol_nat
281.59845889999997
vioscreen_fol_syn
175.9071597
vioscreen_formontn
0.0026301370000000003
vioscreen_fried_fish_servings
1.19115
vioscreen_fried_food_servings
0.24658000000000002
vioscreen_frt5_day
1.1
vioscreen_frtsumm
1.6
vioscreen_fructose
8.641588185
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.114877194
vioscreen_g_total
4.469589108
vioscreen_g_whl
1.354712249
vioscreen_galactos
0.140547964
vioscreen_gammtoco
15.25444135
vioscreen_gender
false
vioscreen_genistn
0.504301432
vioscreen_glac
81.53759632
vioscreen_gltc
88.25860445
vioscreen_glucose
10.72172651
vioscreen_glutamic
17.25323202
vioscreen_glycine
3.753561443
vioscreen_glycitn
0.272356174
vioscreen_grams
3708.786644
vioscreen_hei2010_dairy
6.0
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.6
vioscreen_hei2010_veg
3.3
vioscreen_hei2010_whole_fruit
4.4
vioscreen_hei2010_whole_grains
4.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.0
vioscreen_hei_non_juice_frt
4.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
64.8
vioscreen_hei_sodium
2.8
vioscreen_hei_sol_fat_alc_add_sug
14.6
vioscreen_hei_veg
3.3
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.270082239
vioscreen_inositol
0.109726036
vioscreen_iron
19.31178029
vioscreen_isoleuc
3.851452135
vioscreen_isomalt
0.0
vioscreen_joules
8101.7328769999995
vioscreen_juice_servings
0.2386
vioscreen_lactitol
0.0
vioscreen_lactose
16.28123395
vioscreen_legumes
0.058794518
vioscreen_leucine
6.923178644
vioscreen_line_gi
379.44931510000004
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
2531.396404
vioscreen_lycopene
636.2497003
vioscreen_lysine
5.944055677000001
vioscreen_m_egg
1.0691506579999999
vioscreen_m_fish_hi
1.712986275
vioscreen_m_fish_lo
3.199835456
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
4.912575583
vioscreen_m_nutsd
3.5551506980000003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.01
vioscreen_magnes
416.4464041
vioscreen_maltitol
0.0
vioscreen_maltose
3.8750133780000002
vioscreen_mangan
3.8803831339999997
vioscreen_mannitol
0.082602744
vioscreen_methhis3
11.06547919
vioscreen_methion
2.041123147
vioscreen_mfa141
0.058383570999999995
vioscreen_mfa161
0.9784381190000001
vioscreen_mfa181
33.39353863
vioscreen_mfa201
0.613616484
vioscreen_mfa221
0.251205507
vioscreen_mfatot
35.63364726
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
13.86205453
vioscreen_nccglbr
122.5770869
vioscreen_nccglgr
85.75793022
vioscreen_niacin
26.97718322
vioscreen_niacineq
43.86251873
vioscreen_nitrogen
14.79438276
vioscreen_non_fried_fish_servings
7.4294199999999995
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.381479425
vioscreen_oxalic
182.5295377
vioscreen_oxalicm
273.5521404
vioscreen_pantothe
6.831314881
vioscreen_pectins
3.232437594
vioscreen_pfa182
17.83462784
vioscreen_pfa183
1.4300000330000002
vioscreen_pfa184
0.06421918
vioscreen_pfa204
0.15717809
vioscreen_pfa205
0.270739746
vioscreen_pfa225
0.080109588
vioscreen_pfa226
0.538191829
vioscreen_pfatot
20.48364325
vioscreen_phenylal
3.9872331180000002
vioscreen_phosphor
1591.2647259999999
vioscreen_phytic
840.7080479
vioscreen_pinitol
0.002767123
vioscreen_potass
2930.058219
vioscreen_procdate
10/28/15
vioscreen_proline
5.4937265889999995
vioscreen_protanim
56.11074486
vioscreen_protein
90.00144478
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.89070794
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
478.0
vioscreen_retinol
602.9689639999999
vioscreen_rgrain
3.379890505
vioscreen_ribofla
2.384657601
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.24616
vioscreen_satoco
0.0
vioscreen_selenium
173.9538206
vioscreen_serine
4.445040935
vioscreen_sfa100
0.8180822090000001
vioscreen_sfa120
1.14723285
vioscreen_sfa140
3.3012601669999997
vioscreen_sfa160
17.04345034
vioscreen_sfa170
0.127643846
vioscreen_sfa180
7.678246736
vioscreen_sfa200
0.335013674
vioscreen_sfa220
0.567479465
vioscreen_sfa40
0.944931407
vioscreen_sfa60
0.599643822
vioscreen_sfa80
0.452739726
vioscreen_sfatot
33.52394585
vioscreen_sodium
3252.07363
vioscreen_sorbitol
0.048027394
vioscreen_srvid
18508.0
vioscreen_starch
70.17369435
vioscreen_started
4/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.14528575
vioscreen_sweet_servings
1.04283
vioscreen_tagatose
3.88657561
vioscreen_tfa161t
0.065589043
vioscreen_tfa181t
1.929644023
vioscreen_tfa182t
0.511041093
vioscreen_tgrain
4.574821743999999
vioscreen_thiamin
1.473150718
vioscreen_threonin
3.337561202
vioscreen_time
19.0
vioscreen_totaltfa
2.612876579
vioscreen_totcla
0.140301399
vioscreen_totfolat
457.50565070000005
vioscreen_totsugar
71.54221961
vioscreen_tryptoph
1.013150819
vioscreen_tyrosine
3.085205747
vioscreen_user_id
18508.0
vioscreen_v_drkgr
0.6354520610000001
vioscreen_v_orange
0.09095890599999999
vioscreen_v_other
0.322821923
vioscreen_v_potato
0.12778082
vioscreen_v_starcy
0.054904112000000005
vioscreen_v_tomato
0.115479456
vioscreen_v_total
1.3474246509999999
vioscreen_valine
4.473617094
vioscreen_veg5_day
2.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
2.7
vioscreen_visit
1.0
vioscreen_vita_iu
6946.69863
vioscreen_vita_rae
849.7847603
vioscreen_vita_re
1096.6007710000001
vioscreen_vitb12
7.907727552000001
vioscreen_vitb6
1.927068507
vioscreen_vitc
101.66628850000001
vioscreen_vitd
14.42830158
vioscreen_vitd2
0.358547932
vioscreen_vitd3
14.06978141
vioscreen_vitd_iu
577.1320634
vioscreen_vite_iu
20.64863148
vioscreen_vitk
172.76770119999998
vioscreen_water
3404.052397
vioscreen_weight
Not provided
vioscreen_wgrain
1.1949314070000001
vioscreen_whole_grain_servings
1.35471
vioscreen_xylitol
0.018246579
vioscreen_zinc
13.112822400000002
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)