American Gut Project; 10317.000022556
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633037
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022556
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Not provided
age cat
70+
age years
76.0
age_corrected
76.0
alcohol consumption
Not provided
alcohol_frequency
Not provided
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22556
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1939.0
bmi
23.49
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Not provided
collection date
2015-03-16
collection month
March
collection season
Spring
collection time
13:00
collection_timestamp
2015-03-16 13:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
62.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Not provided
flossing_frequency
Never
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Not provided
homecooked_meals_frequency
Daily
host common name
human
host subject id
fc9664edd28c9efba744685ea198f5b69b446f0c7017ac396e6626581e9e0c906e783998436fe8784f2514d1214b9f18049c20221f4a7efc82dc67c7b44bd49d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.4
level_of_education
Some graduate school or professional
liver_disease
Diagnosed by a medical professional (doctor, physician assistant)
livingwith
Not sure
longitude
-71.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Not provided
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022556
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
Not provided
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
9b60bcf510badd3a
teethbrushing_frequency
Never
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
6.087561537000001
vioscreen_a_cal
604.4268836
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.323808393
vioscreen_addsugar
22.86336954
vioscreen_adsugtot
22.16205587
vioscreen_age
215.0
vioscreen_alanine
8.027042755
vioscreen_alcohol
85.39646832
vioscreen_alcohol_servings
6.08756
vioscreen_alphacar
293.79229449999997
vioscreen_alphtoce
22.45150631
vioscreen_alphtoco
20.82397127
vioscreen_arginine
10.69742482
vioscreen_ash
27.82414116
vioscreen_aspartam
0.0
vioscreen_aspartic
15.17575182
vioscreen_avcarb
102.3288527
vioscreen_bcodeid
Not provided
vioscreen_betacar
3381.9489729999996
vioscreen_betacryp
61.09898866
vioscreen_betaine
101.0607663
vioscreen_betatoco
0.531945216
vioscreen_biochana
0.010739726000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
178.571586
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.33836
vioscreen_calcium_servings
3.00805
vioscreen_calories
2864.145548
vioscreen_carbo
117.8159247
vioscreen_cholest
1309.006507
vioscreen_choline
1175.466866
vioscreen_clac9t11
0.19156161800000002
vioscreen_clat10c12
0.046410966
vioscreen_copper
2.262246662
vioscreen_coumest
0.13383562300000001
vioscreen_cystine
1.964219018
vioscreen_d_cheese
0.132986304
vioscreen_d_milk
1.20536984
vioscreen_d_tot_soym
1.3383561640000001
vioscreen_d_total
1.3383561640000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.200164377
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.8436165589999995
vioscreen_discfat_oil
42.54380886
vioscreen_discfat_sol
53.82871361
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.15613698
vioscreen_f_nj_citmlb
0.141643827
vioscreen_f_nj_other
0.0062191780000000006
vioscreen_f_nj_total
0.147863007
vioscreen_f_other
0.041369864
vioscreen_f_total
0.197506839
vioscreen_fat
137.8333048
vioscreen_fiber
15.48756154
vioscreen_fibh2o
4.586027464
vioscreen_fibinso
10.98967118
vioscreen_finished
1/23/15
vioscreen_fish_servings
15.57231
vioscreen_fol_deqv
427.43107879999997
vioscreen_fol_nat
387.34644689999993
vioscreen_fol_syn
23.53602847
vioscreen_formontn
0.003945206
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.4
vioscreen_fructose
10.73035571
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
1.557890424
vioscreen_g_total
1.7849315069999998
vioscreen_g_whl
0.227068507
vioscreen_galactos
0.104164385
vioscreen_gammtoco
13.87016535
vioscreen_gender
false
vioscreen_genistn
0.067643832
vioscreen_glac
40.81041042
vioscreen_gltc
43.96071276
vioscreen_glucose
14.03950664
vioscreen_glutamic
25.58885113
vioscreen_glycine
6.985562259
vioscreen_glycitn
0.002438356
vioscreen_grams
3408.534247
vioscreen_hei2010_dairy
3.6
vioscreen_hei2010_empty_calories
12.0
vioscreen_hei2010_fatty_acids
5.2
vioscreen_hei2010_fruit
0.4
vioscreen_hei2010_greens_beans
3.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
50.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.0
vioscreen_hei2010_veg
4.4
vioscreen_hei2010_whole_fruit
0.6
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
0.4
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.6
vioscreen_hei_non_juice_frt
0.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.0
vioscreen_hei_score
41.2
vioscreen_hei_sodium
0.8
vioscreen_hei_sol_fat_alc_add_sug
6.3
vioscreen_hei_veg
4.4
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
3.887370572
vioscreen_inositol
0.046000003
vioscreen_iron
11.99829971
vioscreen_isoleuc
6.771944563
vioscreen_isomalt
0.0
vioscreen_joules
11983.59315
vioscreen_juice_servings
0.09932
vioscreen_lactitol
0.0
vioscreen_lactose
14.63131421
vioscreen_legumes
0.005452055
vioscreen_leucine
11.86131609
vioscreen_line_gi
254.55605740000001
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2538.41524
vioscreen_lycopene
21383.01096
vioscreen_lysine
11.423781300000002
vioscreen_m_egg
4.070274039
vioscreen_m_fish_hi
3.207369702
vioscreen_m_fish_lo
5.6667674439999995
vioscreen_m_frank
0.138520552
vioscreen_m_meat
2.2101368530000003
vioscreen_m_mpf
12.15169895
vioscreen_m_nutsd
4.38890431
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9289040759999999
vioscreen_m_soy
0.000986301
vioscreen_magnes
409.83578769999997
vioscreen_maltitol
0.0
vioscreen_maltose
0.8385753890000001
vioscreen_mangan
2.6133700440000003
vioscreen_mannitol
0.340630142
vioscreen_methhis3
32.74572453
vioscreen_methion
3.8558627189999997
vioscreen_mfa141
0.124246571
vioscreen_mfa161
2.152246763
vioscreen_mfa181
51.90887735
vioscreen_mfa201
1.049314985
vioscreen_mfa221
0.629643814
vioscreen_mfatot
56.14129388
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
20.82397127
vioscreen_nccglbr
73.92219606
vioscreen_nccglgr
51.72024829
vioscreen_niacin
33.34054741
vioscreen_niacineq
61.05040668
vioscreen_nitrogen
24.37433112
vioscreen_non_fried_fish_servings
15.57231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.682904805
vioscreen_oxalic
176.9229238
vioscreen_oxalicm
240.4314212
vioscreen_pantothe
9.93002729
vioscreen_pectins
2.898218777
vioscreen_pfa182
21.592166100000004
vioscreen_pfa183
1.505342332
vioscreen_pfa184
0.146849321
vioscreen_pfa204
0.55778077
vioscreen_pfa205
0.6723287090000001
vioscreen_pfa225
0.184410952
vioscreen_pfa226
1.174520498
vioscreen_pfatot
26.02898652
vioscreen_phenylal
6.594082433
vioscreen_phosphor
2158.414041
vioscreen_phytic
551.3274829
vioscreen_pinitol
0.0000822
vioscreen_potass
3603.835616
vioscreen_procdate
10/28/15
vioscreen_proline
7.21471265
vioscreen_protanim
122.24789170000001
vioscreen_protein
149.61232880000003
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.36498288
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
595.0
vioscreen_retinol
843.2064212000001
vioscreen_rgrain
1.59139722
vioscreen_ribofla
2.825178256
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8749
vioscreen_satoco
0.0
vioscreen_selenium
263.1238442
vioscreen_serine
7.35986395
vioscreen_sfa100
0.8206027929999999
vioscreen_sfa120
0.955534216
vioscreen_sfa140
3.504849034
vioscreen_sfa160
24.45372699
vioscreen_sfa170
0.231232881
vioscreen_sfa180
10.10575369
vioscreen_sfa200
0.436739736
vioscreen_sfa220
0.7270959309999999
vioscreen_sfa40
0.94030143
vioscreen_sfa60
0.63936985
vioscreen_sfa80
0.47090412299999995
vioscreen_sfatot
43.74953446
vioscreen_sodium
5472.192123
vioscreen_sorbitol
0.030383562000000003
vioscreen_srvid
16967.0
vioscreen_starch
35.52723138
vioscreen_started
1/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
17.28975278
vioscreen_sweet_servings
0.16604000000000002
vioscreen_tagatose
0.747753405
vioscreen_tfa161t
0.065452053
vioscreen_tfa181t
2.537671233
vioscreen_tfa182t
0.438849337
vioscreen_tgrain
1.747917781
vioscreen_thiamin
1.374274016
vioscreen_threonin
5.962821731
vioscreen_time
53.0
vioscreen_totaltfa
3.109452255
vioscreen_totcla
0.238383547
vioscreen_totfolat
410.88253419999995
vioscreen_totsugar
58.50214041
vioscreen_tryptoph
1.66260284
vioscreen_tyrosine
5.417863067000001
vioscreen_user_id
16967.0
vioscreen_v_drkgr
0.357260299
vioscreen_v_orange
0.059260277
vioscreen_v_other
0.909452088
vioscreen_v_potato
0.20712330399999998
vioscreen_v_starcy
0.224246571
vioscreen_v_tomato
1.041123314
vioscreen_v_total
2.797863268
vioscreen_valine
7.489069188999999
vioscreen_veg5_day
4.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
8745.900684999999
vioscreen_vita_rae
1139.822517
vioscreen_vita_re
1436.4407529999999
vioscreen_vitb12
13.11309664
vioscreen_vitb6
2.652109643
vioscreen_vitc
91.79227312
vioscreen_vitd
22.8214817
vioscreen_vitd2
0.0
vioscreen_vitd3
22.8214817
vioscreen_vitd_iu
912.8592679999999
vioscreen_vite_iu
31.0449299
vioscreen_vitk
121.9886879
vioscreen_water
2923.888014
vioscreen_weight
Not provided
vioscreen_wgrain
0.156520551
vioscreen_whole_grain_servings
0.22707
vioscreen_xylitol
0.014054793999999999
vioscreen_zinc
19.797863600000003
vitamin_b_supplement_frequency
Not provided
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)