10317.000028171; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633576
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:57Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028171
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28171
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
21.89
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/08/2015
collection month
July
collection season
Summer
collection time
14:00
collection_timestamp
2015-07-08 14:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Pakistan
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
34.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
171.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
16bd57b66b5304adc606ed7043b6bcd0c652b6f2c97af84ec588000d4fe11564bcdeffe560d85fe8a3a238ecb35ea6219efd10638657c17989b009ea522e1b99
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
53.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028171
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
e2b338196fa7d499
teethbrushing_frequency
Daily
thyroid
Not provided
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.379698536
vioscreen_addsugar
23.63890465
vioscreen_adsugtot
20.96410932
vioscreen_age
215.0
vioscreen_alanine
2.475040802
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
268.48884849999996
vioscreen_alphtoce
8.972163287
vioscreen_alphtoco
7.405615902999999
vioscreen_arginine
2.94824687
vioscreen_ash
18.68013832
vioscreen_aspartam
0.0
vioscreen_aspartic
5.304273799
vioscreen_avcarb
168.147164
vioscreen_bcodeid
Not provided
vioscreen_betacar
3783.5636990000003
vioscreen_betacryp
455.94717469999995
vioscreen_betaine
165.0342573
vioscreen_betatoco
0.22356164
vioscreen_biochana
0.036547946
vioscreen_bmi
Not provided
vioscreen_caffeine
344.71166519999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.94625
vioscreen_calcium_servings
3.3397300000000003
vioscreen_calories
1248.652911
vioscreen_carbo
193.6492295
vioscreen_cholest
93.08835616
vioscreen_choline
311.79614730000003
vioscreen_clac9t11
0.009452055
vioscreen_clat10c12
0.0013150689999999999
vioscreen_copper
1.47695881
vioscreen_coumest
0.020547945
vioscreen_cystine
0.5909588960000001
vioscreen_d_cheese
0.013232876999999999
vioscreen_d_milk
1.182876712
vioscreen_d_tot_soym
1.946246589
vioscreen_d_total
1.946246589
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.025780821000000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.885342533
vioscreen_discfat_oil
18.92035665
vioscreen_discfat_sol
5.483616826
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0029315070000000003
vioscreen_f_citmlb
2.73600004
vioscreen_f_nj_citmlb
1.229890421
vioscreen_f_nj_other
0.378273993
vioscreen_f_nj_total
1.608164497
vioscreen_f_other
0.378273993
vioscreen_f_total
3.1142742
vioscreen_fat
30.70386879
vioscreen_fiber
25.50284942
vioscreen_fibh2o
4.3375344469999995
vioscreen_fibinso
21.57076734
vioscreen_finished
7/2/15
vioscreen_fish_servings
2.14404
vioscreen_fol_deqv
637.8215753
vioscreen_fol_nat
597.3648972999999
vioscreen_fol_syn
23.79482288
vioscreen_formontn
0.008794521
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.2
vioscreen_fructose
32.48194296
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.493315062
vioscreen_g_total
2.519040962
vioscreen_g_whl
2.025726068
vioscreen_galactos
1.032657487
vioscreen_gammtoco
14.37821731
vioscreen_gender
false
vioscreen_genistn
0.019506849
vioscreen_glac
79.52433112
vioscreen_gltc
90.55591824
vioscreen_glucose
30.64514929
vioscreen_glutamic
10.44627368
vioscreen_glycine
1.911698684
vioscreen_glycitn
0.0
vioscreen_grams
5142.061986
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
92.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
90.7
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.402657621
vioscreen_inositol
0.686493171
vioscreen_iron
9.463178912
vioscreen_isoleuc
2.500465707
vioscreen_isomalt
0.0
vioscreen_joules
5224.360274000001
vioscreen_juice_servings
3.0121900000000004
vioscreen_lactitol
0.0
vioscreen_lactose
25.32167166
vioscreen_legumes
0.38912328399999996
vioscreen_leucine
4.303479506
vioscreen_line_gi
514.9201627
vioscreen_low_fat_dairy_serving
1.92419
vioscreen_lutzeax
5247.044178
vioscreen_lycopene
11565.35342
vioscreen_lysine
4.032629896
vioscreen_m_egg
0.284931507
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.132273969
vioscreen_m_mpf
1.3541370130000001
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
370.86309930000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.554411086
vioscreen_mangan
6.467725947000001
vioscreen_mannitol
0.281150692
vioscreen_methhis3
4.879589175
vioscreen_methion
1.206684938
vioscreen_mfa141
0.002684932
vioscreen_mfa161
0.335808218
vioscreen_mfa181
7.767863736
vioscreen_mfa201
0.248547949
vioscreen_mfa221
0.236547956
vioscreen_mfatot
8.651041444
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
7.405615902999999
vioscreen_nccglbr
113.2169842
vioscreen_nccglgr
79.18843108
vioscreen_niacin
12.46799952
vioscreen_niacineq
21.97339603
vioscreen_nitrogen
9.737560868
vioscreen_non_fried_fish_servings
2.14404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.107534079
vioscreen_oxalic
243.74929369999998
vioscreen_oxalicm
207.2468108
vioscreen_pantothe
5.452027705
vioscreen_pectins
4.8373969930000005
vioscreen_pfa182
10.92024762
vioscreen_pfa183
1.501862826
vioscreen_pfa184
0.052958904
vioscreen_pfa204
0.056630137000000004
vioscreen_pfa205
0.161342464
vioscreen_pfa225
0.06082192
vioscreen_pfa226
0.330657541
vioscreen_pfatot
13.13139983
vioscreen_phenylal
2.508767324
vioscreen_phosphor
1230.613613
vioscreen_phytic
526.1613014
vioscreen_pinitol
0.0
vioscreen_potass
4090.940411
vioscreen_procdate
10/28/15
vioscreen_proline
3.806712529
vioscreen_protanim
30.68397367
vioscreen_protein
60.59093001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.89394264
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
333.0
vioscreen_retinol
251.5254281
vioscreen_rgrain
0.764383562
vioscreen_ribofla
1.933725853
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.44203
vioscreen_satoco
0.0
vioscreen_selenium
73.42142551
vioscreen_serine
2.7251232410000004
vioscreen_sfa100
0.042410958
vioscreen_sfa120
0.067589041
vioscreen_sfa140
0.305260269
vioscreen_sfa160
4.330438316
vioscreen_sfa170
0.021369865
vioscreen_sfa180
1.511670925
vioscreen_sfa200
0.077315067
vioscreen_sfa220
0.069917809
vioscreen_sfa40
0.052136987999999995
vioscreen_sfa60
0.018739726
vioscreen_sfa80
0.026301371
vioscreen_sfatot
6.64142431
vioscreen_sodium
2178.114555
vioscreen_sorbitol
0.272273986
vioscreen_srvid
20044.0
vioscreen_starch
33.77027237
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.40041203
vioscreen_sweet_servings
0.0
vioscreen_tagatose
5.362904003
vioscreen_tfa161t
0.012164383999999999
vioscreen_tfa181t
0.43021921700000004
vioscreen_tfa182t
0.162767123
vioscreen_tgrain
2.397479499
vioscreen_thiamin
1.370547945
vioscreen_threonin
2.187287464
vioscreen_time
14.0
vioscreen_totaltfa
0.7359452759999999
vioscreen_totcla
0.011506849
vioscreen_totfolat
621.1597602999999
vioscreen_totsugar
123.4326841
vioscreen_tryptoph
0.571780897
vioscreen_tyrosine
1.9670135919999998
vioscreen_user_id
20044.0
vioscreen_v_drkgr
1.236383558
vioscreen_v_orange
0.015150686000000002
vioscreen_v_other
0.369780825
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.524109556
vioscreen_v_tomato
0.746767143
vioscreen_v_total
2.892246361
vioscreen_valine
3.1360545539999998
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
7747.249315000001
vioscreen_vita_rae
597.0073202000001
vioscreen_vita_re
942.4910103
vioscreen_vitb12
4.189616331
vioscreen_vitb6
1.4775888940000002
vioscreen_vitc
299.38512410000004
vioscreen_vitd
9.055726937000001
vioscreen_vitd2
0.0
vioscreen_vitd3
9.055726937000001
vioscreen_vitd_iu
362.2290775
vioscreen_vite_iu
11.03462917
vioscreen_vitk
277.97647689999997
vioscreen_water
4833.454110000001
vioscreen_weight
Not provided
vioscreen_wgrain
1.63309577
vioscreen_whole_grain_servings
2.02573
vioscreen_xylitol
0.00780822
vioscreen_zinc
8.194000161
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily