American Gut Project; 10317.000028137
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633570
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:56Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028137
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28137
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
25.66
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
00:40
collection_timestamp
2015-07-07 00:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
7.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
3ca8ef31e9caa70f5a3f28b3a0a27cf5d8a5b40e66d2e0dc61be95ed8901b00b0be529c5f338e1975d6eeeb9b366bb2444ebbca5d164f990c77506a7eec30ab2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028137
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
408ab9e04352b383
teethbrushing_frequency
Not provided
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
107.3159996
vioscreen_activity_level
Not provided
vioscreen_add_sug
17.73520575
vioscreen_addsugar
55.72183754
vioscreen_adsugtot
51.89251926
vioscreen_age
215.0
vioscreen_alanine
6.79063102
vioscreen_alcohol
0.012547945
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
306.94293660000005
vioscreen_alphtoce
50.6880244
vioscreen_alphtoco
32.49441085
vioscreen_arginine
7.804930972
vioscreen_ash
29.63764983
vioscreen_aspartam
107.3159996
vioscreen_aspartic
13.91342305
vioscreen_avcarb
271.3744435
vioscreen_bcodeid
Not provided
vioscreen_betacar
11791.96301
vioscreen_betacryp
271.429238
vioscreen_betaine
218.0726884
vioscreen_betatoco
0.6290410710000001
vioscreen_biochana
0.01871233
vioscreen_bmi
Not provided
vioscreen_caffeine
32.974082300000006
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.53781
vioscreen_calcium_servings
7.1276399999999995
vioscreen_calories
2775.924829
vioscreen_carbo
312.32266699999997
vioscreen_cholest
713.6500427999999
vioscreen_choline
969.0181507000001
vioscreen_clac9t11
0.035671232000000004
vioscreen_clat10c12
0.006328767
vioscreen_copper
2.638356164
vioscreen_coumest
0.005342466
vioscreen_cystine
1.98410979
vioscreen_d_cheese
0.37238355700000003
vioscreen_d_milk
2.840301263
vioscreen_d_tot_soym
3.537808353
vioscreen_d_total
3.537808353
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.8920821520000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
6.314520682
vioscreen_discfat_oil
57.07836579999999
vioscreen_discfat_sol
34.30592626
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.9135890179999999
vioscreen_f_nj_citmlb
0.8997260109999999
vioscreen_f_nj_other
0.634931549
vioscreen_f_nj_total
1.534657434
vioscreen_f_other
0.649945236
vioscreen_f_total
1.56356151
vioscreen_fat
114.0788955
vioscreen_fiber
40.69369381
vioscreen_fibh2o
13.11868445
vioscreen_fibinso
27.77035798
vioscreen_finished
7/6/15
vioscreen_fish_servings
8.65558
vioscreen_fol_deqv
906.5367295
vioscreen_fol_nat
537.6470462
vioscreen_fol_syn
216.9686644
vioscreen_formontn
0.006438356
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.36164
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
19.14504227
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.39386304
vioscreen_g_total
9.084330185
vioscreen_g_whl
4.690465472
vioscreen_galactos
0.5123835729999999
vioscreen_gammtoco
25.02802333
vioscreen_gender
false
vioscreen_genistn
1.336630207
vioscreen_glac
127.5021618
vioscreen_gltc
142.87270980000002
vioscreen_glucose
20.90452028
vioscreen_glutamic
26.31649454
vioscreen_glycine
5.448876952999999
vioscreen_glycitn
0.25868492600000004
vioscreen_grams
3213.5267120000003
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
18.2
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
88.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.5
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.8
vioscreen_hei_score
87.6
vioscreen_hei_sodium
1.7
vioscreen_hei_sol_fat_alc_add_sug
18.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
3.6619455000000003
vioscreen_inositol
0.08175342
vioscreen_iron
25.82989619
vioscreen_isoleuc
6.620246281
vioscreen_isomalt
0.0
vioscreen_joules
11614.45616
vioscreen_juice_servings
0.05775
vioscreen_lactitol
0.0
vioscreen_lactose
41.50465539
vioscreen_legumes
0.09131507400000001
vioscreen_leucine
11.53726054
vioscreen_line_gi
533.6481592
vioscreen_low_fat_dairy_serving
1.16482
vioscreen_lutzeax
19122.360269999997
vioscreen_lycopene
11496.090409999999
vioscreen_lysine
10.25906799
vioscreen_m_egg
3.0257809160000004
vioscreen_m_fish_hi
2.6032604480000003
vioscreen_m_fish_lo
2.3292602540000003
vioscreen_m_frank
0.0
vioscreen_m_meat
0.028273972
vioscreen_m_mpf
5.435287685
vioscreen_m_nutsd
2.255013745
vioscreen_m_organ
0.0
vioscreen_m_poult
0.47449315700000005
vioscreen_m_soy
0.25169863800000003
vioscreen_magnes
743.5809932
vioscreen_maltitol
0.0
vioscreen_maltose
2.9419724560000002
vioscreen_mangan
8.76895869
vioscreen_mannitol
0.26589039800000003
vioscreen_methhis3
17.63942369
vioscreen_methion
3.386027799
vioscreen_mfa141
0.074493152
vioscreen_mfa161
1.430849509
vioscreen_mfa181
47.42852098
vioscreen_mfa201
0.7537809190000001
vioscreen_mfa221
0.38679450000000004
vioscreen_mfatot
50.25011772
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
19.91126258
vioscreen_nccglbr
216.98086469999998
vioscreen_nccglgr
151.75028899999998
vioscreen_niacin
37.20613495
vioscreen_niacineq
67.29503425
vioscreen_nitrogen
23.52386558
vioscreen_non_fried_fish_servings
8.65558
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.4858354960000004
vioscreen_oxalic
555.9625856
vioscreen_oxalicm
655.8306079
vioscreen_pantothe
15.46575343
vioscreen_pectins
6.136329462999999
vioscreen_pfa182
23.72904538
vioscreen_pfa183
2.233122692
vioscreen_pfa184
0.089397263
vioscreen_pfa204
0.317479465
vioscreen_pfa205
0.324246592
vioscreen_pfa225
0.11753425099999999
vioscreen_pfa226
0.7225204679999999
vioscreen_pfatot
27.69134204
vioscreen_phenylal
6.540794226
vioscreen_phosphor
2735.8589039999997
vioscreen_phytic
1260.5960619999998
vioscreen_pinitol
0.0038082190000000003
vioscreen_potass
5039.906164
vioscreen_procdate
10/28/15
vioscreen_proline
8.327947078
vioscreen_protanim
98.36433005
vioscreen_protein
145.0134632
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
46.64578339
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
314.0
vioscreen_retinol
1579.878938
vioscreen_rgrain
2.001808313
vioscreen_ribofla
3.715616639
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.9795900000000002
vioscreen_satoco
27.96005458
vioscreen_selenium
249.08289810000002
vioscreen_serine
7.449369917
vioscreen_sfa100
0.27452054
vioscreen_sfa120
0.496219165
vioscreen_sfa140
1.438027411
vioscreen_sfa160
16.80298721
vioscreen_sfa170
0.10041095300000001
vioscreen_sfa180
5.969479077000001
vioscreen_sfa200
0.34153429799999996
vioscreen_sfa220
0.476383575
vioscreen_sfa40
0.28002741600000003
vioscreen_sfa60
0.16115068400000002
vioscreen_sfa80
0.136931516
vioscreen_sfatot
26.94761344
vioscreen_sodium
5035.878425
vioscreen_sorbitol
0.591479492
vioscreen_srvid
20080.0
vioscreen_starch
126.11400900000001
vioscreen_started
7/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
47.564576200000005
vioscreen_sweet_servings
0.18991
vioscreen_tagatose
9.924657534
vioscreen_tfa161t
0.036054797
vioscreen_tfa181t
3.5906851989999997
vioscreen_tfa182t
0.543698705
vioscreen_tgrain
7.503151086
vioscreen_thiamin
2.591287691
vioscreen_threonin
5.823041524
vioscreen_time
27.0
vioscreen_totaltfa
4.252821998
vioscreen_totcla
0.042767125
vioscreen_totfolat
754.6148116
vioscreen_totsugar
134.90239730000002
vioscreen_tryptoph
1.805616572
vioscreen_tyrosine
5.203151086
vioscreen_user_id
20080.0
vioscreen_v_drkgr
1.80613696
vioscreen_v_orange
0.037945207
vioscreen_v_other
0.629753468
vioscreen_v_potato
0.31273973
vioscreen_v_starcy
0.051150685
vioscreen_v_tomato
0.7201370029999999
vioscreen_v_total
3.5576165189999998
vioscreen_valine
7.724656865
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.1
vioscreen_visit
1.0
vioscreen_vita_iu
25401.43836
vioscreen_vita_rae
2586.6397260000003
vioscreen_vita_re
3593.406164
vioscreen_vitb12
12.01128799
vioscreen_vitb6
3.805096185
vioscreen_vitc
280.86699489999995
vioscreen_vitd
28.89158819
vioscreen_vitd2
0.0
vioscreen_vitd3
28.89158819
vioscreen_vitd_iu
1155.663527
vioscreen_vite_iu
57.64589576
vioscreen_vitk
941.2016267000001
vioscreen_water
2642.820034
vioscreen_weight
Not provided
vioscreen_wgrain
5.5013153489999995
vioscreen_whole_grain_servings
4.6904699999999995
vioscreen_xylitol
0.020027398000000002
vioscreen_zinc
20.85931346
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
85.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)