American Gut Project; 10317.000029559
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633744
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029559
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29559
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
25.25
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
11:20
collection_timestamp
2015-07-07 11:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
63.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
178.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d24fffb5bbe06c1ce1b5a4d0788fa5ffc6989a549505ac210059547ebd8a620c4e26196996a3a00c745f640080cf4b8828699beb957afc9d13db0e23175d6e73
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.9
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.1
lowgrain_diet_type
Not provided
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029559
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d66fd8817afa837b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.87863017
vioscreen_a_cal
119.9243365
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.2715615470000001
vioscreen_addsugar
9.509069323
vioscreen_adsugtot
6.099232128
vioscreen_age
215.0
vioscreen_alanine
2.534082366
vioscreen_alcohol
13.04756127
vioscreen_alcohol_servings
0.8786299999999999
vioscreen_alphacar
1789.5236300000001
vioscreen_alphtoce
10.10104078
vioscreen_alphtoco
9.010740181000001
vioscreen_arginine
3.1122739189999997
vioscreen_ash
15.90970008
vioscreen_aspartam
0.0
vioscreen_aspartic
5.191068466
vioscreen_avcarb
129.91510060000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
6798.160959000001
vioscreen_betacryp
80.65872753
vioscreen_betaine
58.34742081
vioscreen_betatoco
0.285095905
vioscreen_biochana
0.0037260270000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
426.2399829
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.052579999999999995
vioscreen_calcium_servings
1.09836
vioscreen_calories
1328.676027
vioscreen_carbo
153.0065604
vioscreen_cholest
263.7794092
vioscreen_choline
397.1206336
vioscreen_clac9t11
0.02739726
vioscreen_clat10c12
0.010520548000000001
vioscreen_copper
1.38750694
vioscreen_coumest
0.392000005
vioscreen_cystine
0.609917837
vioscreen_d_cheese
0.0014246570000000002
vioscreen_d_milk
0.051068490999999994
vioscreen_d_tot_soym
0.052575344
vioscreen_d_total
0.052575344
vioscreen_d_yogurt
0.0
vioscreen_daidzein
3.826438423
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.197205593
vioscreen_discfat_oil
21.35523464
vioscreen_discfat_sol
8.905315577
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0021643829999999998
vioscreen_f_citmlb
0.048493148
vioscreen_f_nj_citmlb
0.038082191
vioscreen_f_nj_other
2.213150819
vioscreen_f_nj_total
2.25123291
vioscreen_f_other
2.7184110460000004
vioscreen_f_total
2.766904063
vioscreen_fat
53.67416524
vioscreen_fiber
23.09164437
vioscreen_fibh2o
6.034520815
vioscreen_fibinso
17.07227231
vioscreen_finished
7/4/15
vioscreen_fish_servings
2.32596
vioscreen_fol_deqv
388.1092466
vioscreen_fol_nat
373.3529538
vioscreen_fol_syn
8.679588506
vioscreen_formontn
0.001068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.7
vioscreen_frtsumm
5.5
vioscreen_fructose
31.01161708
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.253506846
vioscreen_g_total
0.681041059
vioscreen_g_whl
0.427534255
vioscreen_galactos
0.111890411
vioscreen_gammtoco
9.545917835
vioscreen_gender
false
vioscreen_genistn
6.280439319
vioscreen_glac
57.3091235
vioscreen_gltc
64.34090325
vioscreen_glucose
24.78964041
vioscreen_glutamic
8.000163206
vioscreen_glycine
2.171424678
vioscreen_glycitn
0.808383555
vioscreen_grams
3823.2294520000005
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.6
vioscreen_hei_score
71.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
1.269397391
vioscreen_inositol
0.142164392
vioscreen_iron
8.343753344
vioscreen_isoleuc
2.046164149
vioscreen_isomalt
0.0
vioscreen_joules
5559.17911
vioscreen_juice_servings
1.03132
vioscreen_lactitol
0.0
vioscreen_lactose
0.533397267
vioscreen_legumes
0.024465754
vioscreen_leucine
3.475479586
vioscreen_line_gi
321.9634418
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3419.236986
vioscreen_lycopene
3867.790753
vioscreen_lysine
3.320575035
vioscreen_m_egg
1.00967123
vioscreen_m_fish_hi
0.793150685
vioscreen_m_fish_lo
0.532301393
vioscreen_m_frank
0.0
vioscreen_m_meat
1.351369779
vioscreen_m_mpf
3.0638631739999997
vioscreen_m_nutsd
1.088191788
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.319397265
vioscreen_m_soy
0.407972571
vioscreen_magnes
321.0716182
vioscreen_maltitol
0.0
vioscreen_maltose
1.131013802
vioscreen_mangan
7.003286869
vioscreen_mannitol
1.016657581
vioscreen_methhis3
10.67624612
vioscreen_methion
1.079808316
vioscreen_mfa141
0.057726020999999995
vioscreen_mfa161
1.032383749
vioscreen_mfa181
21.63060654
vioscreen_mfa201
0.28380823
vioscreen_mfa221
0.122904101
vioscreen_mfatot
23.19866224
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.010740181000001
vioscreen_nccglbr
86.16946169
vioscreen_nccglgr
60.27326627
vioscreen_niacin
14.92901327
vioscreen_niacineq
23.57079677
vioscreen_nitrogen
7.876246121
vioscreen_non_fried_fish_servings
2.32596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.647561604
vioscreen_oxalic
364.16947769999996
vioscreen_oxalicm
338.01635269999997
vioscreen_pantothe
4.589014006
vioscreen_pectins
5.2370411489999995
vioscreen_pfa182
12.54175407
vioscreen_pfa183
1.256027263
vioscreen_pfa184
0.028794521
vioscreen_pfa204
0.12745204599999999
vioscreen_pfa205
0.098712325
vioscreen_pfa225
0.038438355
vioscreen_pfa226
0.225917827
vioscreen_pfatot
14.37578125
vioscreen_phenylal
2.015260294
vioscreen_phosphor
782.7413527000001
vioscreen_phytic
574.8912243
vioscreen_pinitol
0.004054795
vioscreen_potass
3584.904452
vioscreen_procdate
10/28/15
vioscreen_proline
2.078986515
vioscreen_protanim
29.73997218
vioscreen_protein
48.47276862
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.73334359
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
323.0
vioscreen_retinol
247.23904109999998
vioscreen_rgrain
0.317095885
vioscreen_ribofla
1.310602726
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8454200000000003
vioscreen_satoco
0.0
vioscreen_selenium
78.09877997
vioscreen_serine
2.23643849
vioscreen_sfa100
0.025890412999999998
vioscreen_sfa120
0.056328765999999995
vioscreen_sfa140
0.357397294
vioscreen_sfa160
7.776931052
vioscreen_sfa170
0.030739727
vioscreen_sfa180
2.5475619380000003
vioscreen_sfa200
0.137095893
vioscreen_sfa220
0.21301369899999997
vioscreen_sfa40
0.008520548000000001
vioscreen_sfa60
0.004356164
vioscreen_sfa80
0.0056164380000000005
vioscreen_sfatot
11.30263137
vioscreen_sodium
3047.645548
vioscreen_sorbitol
2.308465827
vioscreen_srvid
20063.0
vioscreen_starch
33.18226937
vioscreen_started
7/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.54750709
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.000328767
vioscreen_tfa161t
0.016602741
vioscreen_tfa181t
0.704630227
vioscreen_tfa182t
0.12356165
vioscreen_tgrain
0.8540547409999999
vioscreen_thiamin
0.784602837
vioscreen_threonin
1.9111232809999998
vioscreen_time
20.0
vioscreen_totaltfa
0.848328807
vioscreen_totcla
0.038109589
vioscreen_totfolat
382.0325342
vioscreen_totsugar
68.77618258
vioscreen_tryptoph
0.518657528
vioscreen_tyrosine
1.530548179
vioscreen_user_id
20063.0
vioscreen_v_drkgr
0.278438349
vioscreen_v_orange
0.35961642299999996
vioscreen_v_other
1.153342469
vioscreen_v_potato
0.568109549
vioscreen_v_starcy
0.108547942
vioscreen_v_tomato
0.7916438690000001
vioscreen_v_total
3.259725827
vioscreen_valine
2.332630231
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.5
vioscreen_visit
1.0
vioscreen_vita_iu
13713.46575
vioscreen_vita_rae
891.6776541000002
vioscreen_vita_re
1536.1148970000002
vioscreen_vitb12
3.44578038
vioscreen_vitb6
1.832739759
vioscreen_vitc
119.4187179
vioscreen_vitd
6.169917862
vioscreen_vitd2
0.000438356
vioscreen_vitd3
6.16950717
vioscreen_vitd_iu
246.7967145
vioscreen_vite_iu
13.44238281
vioscreen_vitk
173.9075342
vioscreen_water
3551.8643840000004
vioscreen_weight
Not provided
vioscreen_wgrain
0.536958919
vioscreen_whole_grain_servings
0.42753
vioscreen_xylitol
0.045616437
vioscreen_zinc
6.548822105
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
80.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)