American Gut Project; 10317.000030334
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634181
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:23Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030334
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
68.0
age_corrected
68.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030334
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1947.0
bmi
20.69
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
09:13
collection_timestamp
2015-07-27 09:13
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Bermuda
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
29.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
166.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7ac6c6afb7136571d624e2ec7c7923bcaa5b79d40d138727fe5653d07b29f04fed67eae1f3494c76019de2cd657b7587d283bba9377d687c2d4e39a54e26e36c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.4
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Not provided
roommates_in_study
Not provided
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030334
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
ea08dc0ce466d4d1
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.7943561709999999
vioscreen_a_cal
98.45013913
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.520959305
vioscreen_addsugar
17.5561082
vioscreen_adsugtot
16.2369863
vioscreen_age
215.0
vioscreen_alanine
3.104438677
vioscreen_alcohol
12.31945099
vioscreen_alcohol_servings
0.7943600000000001
vioscreen_alphacar
364.08540239999996
vioscreen_alphtoce
22.85449486
vioscreen_alphtoco
21.11246522
vioscreen_arginine
5.633205801
vioscreen_ash
18.83457299
vioscreen_aspartam
0.0
vioscreen_aspartic
7.667314587000001
vioscreen_avcarb
137.1395334
vioscreen_bcodeid
Not provided
vioscreen_betacar
4502.166781
vioscreen_betacryp
283.80738439999993
vioscreen_betaine
102.2181186
vioscreen_betatoco
0.9347397059999999
vioscreen_biochana
0.011013698999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
285.10528680000004
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.78362
vioscreen_calcium_servings
2.21792
vioscreen_calories
1935.813527
vioscreen_carbo
169.07060149999998
vioscreen_cholest
169.47887409999998
vioscreen_choline
334.7143193
vioscreen_clac9t11
0.060931501
vioscreen_clat10c12
0.020876713
vioscreen_copper
1.947945373
vioscreen_coumest
0.181972598
vioscreen_cystine
0.9367397359999999
vioscreen_d_cheese
0.272493148
vioscreen_d_milk
0.511123281
vioscreen_d_tot_soym
0.783616408
vioscreen_d_total
0.783616408
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.217315068
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.425534267
vioscreen_discfat_oil
54.30413634
vioscreen_discfat_sol
18.10588881
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000849315
vioscreen_f_citmlb
0.78506846
vioscreen_f_nj_citmlb
0.779534327
vioscreen_f_nj_other
1.660328821
vioscreen_f_nj_total
2.439862813
vioscreen_f_other
1.660328821
vioscreen_f_total
2.4453971130000003
vioscreen_fat
109.35511559999999
vioscreen_fiber
31.93227472
vioscreen_fibh2o
9.975396645
vioscreen_fibinso
22.05054848
vioscreen_finished
7/24/15
vioscreen_fish_servings
1.6653799999999999
vioscreen_fol_deqv
483.81545379999994
vioscreen_fol_nat
417.8817637
vioscreen_fol_syn
38.81926102
vioscreen_formontn
0.009095891
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.9
vioscreen_fructose
21.82660397
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.901397287
vioscreen_g_total
3.377807952
vioscreen_g_whl
1.476410999
vioscreen_galactos
0.169808197
vioscreen_gammtoco
13.53632813
vioscreen_gender
false
vioscreen_genistn
0.124465754
vioscreen_glac
56.14150792
vioscreen_gltc
63.86013485
vioscreen_glucose
20.12865609
vioscreen_glutamic
14.92624679
vioscreen_glycine
3.437315055
vioscreen_glycitn
0.0
vioscreen_grams
3128.460959
vioscreen_hei2010_dairy
3.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
87.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
9.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.1
vioscreen_hei_drk_g_org_veg_leg
4.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.7
vioscreen_hei_score
79.4
vioscreen_hei_sodium
7.2
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.5
vioscreen_height
Not provided
vioscreen_histidin
1.85468449
vioscreen_inositol
0.137671233
vioscreen_iron
11.27682069
vioscreen_isoleuc
2.7270138260000003
vioscreen_isomalt
0.0
vioscreen_joules
8099.440411
vioscreen_juice_servings
0.01115
vioscreen_lactitol
0.0
vioscreen_lactose
6.960465941
vioscreen_legumes
0.0
vioscreen_leucine
5.126684905
vioscreen_line_gi
330.4903253
vioscreen_low_fat_dairy_serving
0.03926
vioscreen_lutzeax
3737.890068
vioscreen_lycopene
3471.543151
vioscreen_lysine
3.725863188
vioscreen_m_egg
0.506547944
vioscreen_m_fish_hi
0.469945202
vioscreen_m_fish_lo
0.479123301
vioscreen_m_frank
0.039589041
vioscreen_m_meat
0.631479425
vioscreen_m_mpf
1.777123355
vioscreen_m_nutsd
8.741917942
vioscreen_m_organ
0.0
vioscreen_m_poult
0.157041095
vioscreen_m_soy
0.000136986
vioscreen_magnes
491.0850598999999
vioscreen_maltitol
0.0
vioscreen_maltose
1.920602793
vioscreen_mangan
5.579752716000001
vioscreen_mannitol
0.5214794420000001
vioscreen_methhis3
6.084766963
vioscreen_methion
1.305917818
vioscreen_mfa141
0.050794518
vioscreen_mfa161
0.7774247679999999
vioscreen_mfa181
45.96175086
vioscreen_mfa201
0.836383558
vioscreen_mfa221
0.065534252
vioscreen_mfatot
47.81681828
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
21.11246522
vioscreen_nccglbr
103.0065497
vioscreen_nccglgr
72.04386237
vioscreen_niacin
26.80364405
vioscreen_niacineq
40.14345034
vioscreen_nitrogen
12.66506582
vioscreen_non_fried_fish_servings
1.6653799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.49109589
vioscreen_oxalic
435.49768839999996
vioscreen_oxalicm
521.3273973
vioscreen_pantothe
6.52273986
vioscreen_pectins
6.383890063
vioscreen_pfa182
26.64537404
vioscreen_pfa183
1.263808243
vioscreen_pfa184
0.017506848999999998
vioscreen_pfa204
0.068520554
vioscreen_pfa205
0.059041094
vioscreen_pfa225
0.021616438999999998
vioscreen_pfa226
0.12939725900000001
vioscreen_pfatot
28.26096158
vioscreen_phenylal
3.359068319
vioscreen_phosphor
1308.792637
vioscreen_phytic
1198.5491439999998
vioscreen_pinitol
0.0
vioscreen_potass
3600.5729450000003
vioscreen_procdate
10/28/15
vioscreen_proline
4.171013819
vioscreen_protanim
24.54931239
vioscreen_protein
73.96892123
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
49.42060146
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
267.0
vioscreen_retinol
174.7484589
vioscreen_rgrain
1.940958938
vioscreen_ribofla
1.7670134240000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.1246
vioscreen_satoco
0.0
vioscreen_selenium
136.3370077
vioscreen_serine
3.8441095219999997
vioscreen_sfa100
0.313424641
vioscreen_sfa120
0.506767085
vioscreen_sfa140
1.544575229
vioscreen_sfa160
14.62914972
vioscreen_sfa170
0.056000000999999994
vioscreen_sfa180
5.4627117
vioscreen_sfa200
0.6461643579999999
vioscreen_sfa220
1.35016446
vioscreen_sfa40
0.34819177100000004
vioscreen_sfa60
0.224465754
vioscreen_sfa80
0.192904099
vioscreen_sfatot
25.96038367
vioscreen_sodium
2309.161301
vioscreen_sorbitol
1.180684965
vioscreen_srvid
20220.0
vioscreen_starch
47.55539919
vioscreen_started
7/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.64942477
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
0.761342506
vioscreen_tfa161t
0.023589042999999997
vioscreen_tfa181t
0.6418355029999999
vioscreen_tfa182t
0.21884930800000002
vioscreen_tgrain
3.3156711530000003
vioscreen_thiamin
1.425150665
vioscreen_threonin
2.36783581
vioscreen_time
23.0
vioscreen_totaltfa
0.950136953
vioscreen_totcla
0.08167123700000001
vioscreen_totfolat
456.70102740000004
vioscreen_totsugar
75.56702162
vioscreen_tryptoph
0.8
vioscreen_tyrosine
2.443534287
vioscreen_user_id
20220.0
vioscreen_v_drkgr
0.581589038
vioscreen_v_orange
0.033945204
vioscreen_v_other
1.3097259940000001
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.003671233
vioscreen_v_tomato
0.717260241
vioscreen_v_total
2.6461915730000003
vioscreen_valine
3.278109616
vioscreen_veg5_day
5.8
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
5.3
vioscreen_visit
1.0
vioscreen_vita_iu
8627.508904
vioscreen_vita_rae
576.9262842
vioscreen_vita_re
979.1020548
vioscreen_vitb12
2.1755615230000003
vioscreen_vitb6
2.157314854
vioscreen_vitc
164.8715646
vioscreen_vitd
5.1659718130000005
vioscreen_vitd2
0.000219178
vioscreen_vitd3
5.16575309
vioscreen_vitd_iu
206.63887250000002
vioscreen_vite_iu
31.48096105
vioscreen_vitk
196.5125428
vioscreen_water
2752.146918
vioscreen_weight
Not provided
vioscreen_wgrain
1.3747123819999998
vioscreen_whole_grain_servings
1.47641
vioscreen_xylitol
0.052904112999999996
vioscreen_zinc
10.23723312
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)