American Gut Project; 10317.000028153
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633571
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:56Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028153
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28153
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
21.72
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Five or more
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-24
collection month
June
collection season
Summer
collection time
19:40
collection_timestamp
2015-06-24 19:40
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Not sure
drinks_per_session
Not provided
economic_region
Not provided
elevation
106.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
171.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ca1c2525d569d21fb647330df33fa4f731ae1f7cf58fb516d1ea1ae5c98d8e6ec7fe5c61e603159bb3ccd8fab6e7cf1a0339f0819e82c0a041fe52562b77d029
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028153
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
c2682ccbc6383aae
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.452356166
vioscreen_a_cal
61.46594606
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.901205319
vioscreen_addsugar
14.852054800000001
vioscreen_adsugtot
13.36482235
vioscreen_age
215.0
vioscreen_alanine
2.341479492
vioscreen_alcohol
6.4908764979999996
vioscreen_alcohol_servings
0.45236000000000004
vioscreen_alphacar
3456.461301
vioscreen_alphtoce
8.599178617
vioscreen_alphtoco
7.599863549
vioscreen_arginine
2.747315289
vioscreen_ash
14.05493231
vioscreen_aspartam
0.0
vioscreen_aspartic
4.552137401
vioscreen_avcarb
147.04981809999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
10192.05753
vioscreen_betacryp
206.97303080000003
vioscreen_betaine
53.73132491
vioscreen_betatoco
0.228191783
vioscreen_biochana
0.005068493
vioscreen_bmi
Not provided
vioscreen_caffeine
101.1147046
vioscreen_calcium
true
vioscreen_calcium_avg
1500.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.90885
vioscreen_calcium_servings
1.808
vioscreen_calories
1320.5672949999998
vioscreen_carbo
162.7990475
vioscreen_cholest
144.6093429
vioscreen_choline
235.3284675
vioscreen_clac9t11
0.060794522000000004
vioscreen_clat10c12
0.015863016
vioscreen_copper
1.058301367
vioscreen_coumest
0.022191782
vioscreen_cystine
0.643041072
vioscreen_d_cheese
0.060794522000000004
vioscreen_d_milk
0.7007123559999999
vioscreen_d_tot_soym
0.908849345
vioscreen_d_total
0.908849345
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.037561644
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.784164303
vioscreen_discfat_oil
24.41797143
vioscreen_discfat_sol
15.78808326
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00090411
vioscreen_f_citmlb
0.8797808090000001
vioscreen_f_nj_citmlb
0.376246539
vioscreen_f_nj_other
0.300356157
vioscreen_f_nj_total
0.676602716
vioscreen_f_other
0.300356157
vioscreen_f_total
1.180136986
vioscreen_fat
52.57874572
vioscreen_fiber
15.75062741
vioscreen_fibh2o
3.915809276
vioscreen_fibinso
11.88153227
vioscreen_finished
6/13/15
vioscreen_fish_servings
0.79538
vioscreen_fol_deqv
487.36104450000005
vioscreen_fol_nat
249.5591182
vioscreen_fol_syn
139.8823309
vioscreen_formontn
0.0033424659999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.7
vioscreen_frtsumm
2.4
vioscreen_fructose
13.70597175
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.4079725290000003
vioscreen_g_total
3.178602914
vioscreen_g_whl
0.770630134
vioscreen_galactos
0.254273966
vioscreen_gammtoco
8.896657615
vioscreen_gender
false
vioscreen_genistn
0.030876708
vioscreen_glac
83.37318065
vioscreen_gltc
89.50720248
vioscreen_glucose
15.52074058
vioscreen_glutamic
8.837809022
vioscreen_glycine
2.014685059
vioscreen_glycitn
0.00309589
vioscreen_grams
2903.423973
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
79.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
80.1
vioscreen_hei_sodium
0.7
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.9
vioscreen_height
Not provided
vioscreen_histidin
1.227616652
vioscreen_inositol
0.22298629999999997
vioscreen_iron
14.78956416
vioscreen_isoleuc
2.000136953
vioscreen_isomalt
0.0
vioscreen_joules
5525.25274
vioscreen_juice_servings
1.00712
vioscreen_lactitol
0.0
vioscreen_lactose
11.03076707
vioscreen_legumes
0.0
vioscreen_leucine
3.6132327560000004
vioscreen_line_gi
437.071875
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
4567.558219
vioscreen_lycopene
3196.9315070000002
vioscreen_lysine
2.9758899430000003
vioscreen_m_egg
0.30276712899999997
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.37424659200000004
vioscreen_m_frank
0.23336986399999998
vioscreen_m_meat
1.001232827
vioscreen_m_mpf
2.296684871
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
0.0
vioscreen_m_poult
0.608821921
vioscreen_m_soy
0.002
vioscreen_magnes
268.2438142
vioscreen_maltitol
0.0
vioscreen_maltose
0.7056164890000001
vioscreen_mangan
2.789342258
vioscreen_mannitol
0.28326031399999996
vioscreen_methhis3
8.043013565
vioscreen_methion
1.015780765
vioscreen_mfa141
0.07509589
vioscreen_mfa161
0.678410946
vioscreen_mfa181
18.60958904
vioscreen_mfa201
0.243041093
vioscreen_mfa221
0.002986302
vioscreen_mfatot
19.69208449
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
7.599863549
vioscreen_nccglbr
118.45082409999999
vioscreen_nccglgr
82.8583262
vioscreen_niacin
18.82498529
vioscreen_niacineq
26.85700985
vioscreen_nitrogen
7.55304139
vioscreen_non_fried_fish_servings
0.79538
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5630685469999999
vioscreen_oxalic
225.72009849999998
vioscreen_oxalicm
234.19056080000001
vioscreen_pantothe
3.69504127
vioscreen_pectins
3.2788768189999997
vioscreen_pfa182
12.99342359
vioscreen_pfa183
1.498958724
vioscreen_pfa184
0.00139726
vioscreen_pfa204
0.064054797
vioscreen_pfa205
0.017150686000000002
vioscreen_pfa225
0.009205479
vioscreen_pfa226
0.036575343999999996
vioscreen_pfatot
14.65904324
vioscreen_phenylal
2.05956145
vioscreen_phosphor
815.1569348999999
vioscreen_phytic
405.178125
vioscreen_pinitol
0.0000822
vioscreen_potass
2544.074486
vioscreen_procdate
10/28/15
vioscreen_proline
2.8354518939999998
vioscreen_protanim
26.51364512
vioscreen_protein
46.30033176
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.7862492
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
392.0
vioscreen_retinol
294.6044521
vioscreen_rgrain
3.098000054
vioscreen_ribofla
1.498794514
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.37795
vioscreen_satoco
0.0
vioscreen_selenium
67.6374786
vioscreen_serine
2.183451948
vioscreen_sfa100
0.19912328899999998
vioscreen_sfa120
0.38627394600000003
vioscreen_sfa140
0.9321096759999999
vioscreen_sfa160
8.224383293999999
vioscreen_sfa170
0.06810958
vioscreen_sfa180
3.2986023789999996
vioscreen_sfa200
0.163452065
vioscreen_sfa220
0.23145202199999998
vioscreen_sfa40
0.22317810100000002
vioscreen_sfa60
0.125424654
vioscreen_sfa80
0.095972599
vioscreen_sfatot
14.15038527
vioscreen_sodium
2537.383904
vioscreen_sorbitol
0.052465747
vioscreen_srvid
18888.0
vioscreen_starch
70.94725492
vioscreen_started
6/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.3051517
vioscreen_sweet_servings
0.06575
vioscreen_tagatose
1.290657524
vioscreen_tfa161t
0.024876712000000002
vioscreen_tfa181t
0.7141917609999999
vioscreen_tfa182t
0.164383572
vioscreen_tgrain
3.965424671
vioscreen_thiamin
1.3499453190000001
vioscreen_threonin
1.840410959
vioscreen_time
22.0
vioscreen_totaltfa
0.921643819
vioscreen_totcla
0.07643835
vioscreen_totfolat
389.4413955
vioscreen_totsugar
61.23013699
vioscreen_tryptoph
0.48169865
vioscreen_tyrosine
1.5463833740000001
vioscreen_user_id
18888.0
vioscreen_v_drkgr
0.31753423
vioscreen_v_orange
0.6199177779999999
vioscreen_v_other
0.650904073
vioscreen_v_potato
0.408876686
vioscreen_v_starcy
0.11561644
vioscreen_v_tomato
0.562575374
vioscreen_v_total
2.675397314
vioscreen_valine
2.354685159
vioscreen_veg5_day
4.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.4
vioscreen_visit
1.0
vioscreen_vita_iu
21021.360269999997
vioscreen_vita_rae
1296.585959
vioscreen_vita_re
2298.567295
vioscreen_vitb12
3.90594566
vioscreen_vitb6
1.849972409
vioscreen_vitc
127.5461366
vioscreen_vitd
4.345534568
vioscreen_vitd2
0.0
vioscreen_vitd3
4.345534568
vioscreen_vitd_iu
173.8213827
vioscreen_vite_iu
11.33454757
vioscreen_vitk
160.99042169999998
vioscreen_water
2626.7931510000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.867452041
vioscreen_whole_grain_servings
0.77063
vioscreen_xylitol
0.01939726
vioscreen_zinc
6.860629147
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
63.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)