American Gut Project; 10317.000023395
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632678
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023395
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
50.0
age_corrected
50.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23395
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1965.0
bmi
21.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
Not provided
collection date
2015-04-14
collection month
April
collection season
Spring
collection time
19:30
collection_timestamp
2015-04-14 19:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
Canada
country of birth
Canada
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
285.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Not provided
geo loc name
Canada
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
0ad191d18036cdd8c4e768bbefbc10ab27c4b2a363251acc7b9696c517abd49c7c73fccf2e5ce8b68779f48aa01575dbbe65f7396ffd85fae8c123d4abdcd61f
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.4
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
Yes
longitude
-80.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Not provided
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
Not provided
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023395
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ON
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
111d70a905033ecb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Rarely (less than once/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.68397267
vioscreen_addsugar
13.22717787
vioscreen_adsugtot
13.07449299
vioscreen_age
215.0
vioscreen_alanine
3.600493298
vioscreen_alcohol
0.0000822
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
12.54123234
vioscreen_alphtoce
11.92857582
vioscreen_alphtoco
11.0797263
vioscreen_arginine
5.038274227
vioscreen_ash
11.09509645
vioscreen_aspartam
0.0
vioscreen_aspartic
6.811424443
vioscreen_avcarb
72.06009739
vioscreen_bcodeid
Not provided
vioscreen_betacar
1300.060959
vioscreen_betacryp
8.08219245
vioscreen_betaine
33.56986569
vioscreen_betatoco
0.42268492799999996
vioscreen_biochana
0.005041096
vioscreen_bmi
Not provided
vioscreen_caffeine
295.99096749999995
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.00375
vioscreen_calcium_servings
0.5807899999999999
vioscreen_calories
1265.5
vioscreen_carbo
90.00369221
vioscreen_cholest
260.83383990000004
vioscreen_choline
313.4831764
vioscreen_clac9t11
0.09435615
vioscreen_clat10c12
0.035506849
vioscreen_copper
2.9320546610000005
vioscreen_coumest
0.13383562300000001
vioscreen_cystine
0.844821961
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.003753425
vioscreen_d_tot_soym
0.003753425
vioscreen_d_total
0.003753425
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.13419178
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.890438299
vioscreen_discfat_oil
29.48895816
vioscreen_discfat_sol
14.8440831
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.982054828
vioscreen_f_nj_citmlb
0.982054828
vioscreen_f_nj_other
0.170465746
vioscreen_f_nj_total
1.152520585
vioscreen_f_other
0.170465746
vioscreen_f_total
1.152520585
vioscreen_fat
75.08150685
vioscreen_fiber
17.94416604
vioscreen_fibh2o
4.539972843999999
vioscreen_fibinso
13.41235552
vioscreen_finished
4/14/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
276.24863010000007
vioscreen_fol_nat
276.24863010000007
vioscreen_fol_syn
0.0
vioscreen_formontn
0.00339726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.3
vioscreen_fructose
9.244931239
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.091232875
vioscreen_g_total
1.587643809
vioscreen_g_whl
1.496410966
vioscreen_galactos
0.018082192
vioscreen_gammtoco
6.712904002999999
vioscreen_gender
false
vioscreen_genistn
0.08591781
vioscreen_glac
29.65211098
vioscreen_gltc
35.15471158
vioscreen_glucose
8.661287992
vioscreen_glutamic
11.27742535
vioscreen_glycine
3.668055035
vioscreen_glycitn
0.0
vioscreen_grams
2238.193151
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.8
vioscreen_hei2010_veg
1.4
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.9
vioscreen_hei_drk_g_org_veg_leg
2.9
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.0
vioscreen_hei_score
63.6
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
1.4
vioscreen_hei_whl_grains
3.9
vioscreen_height
Not provided
vioscreen_histidin
2.0274521080000003
vioscreen_inositol
0.136054805
vioscreen_iron
8.958411146
vioscreen_isoleuc
2.9107398460000002
vioscreen_isomalt
0.0
vioscreen_joules
5294.856164
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.065671236
vioscreen_legumes
0.144219176
vioscreen_leucine
5.141917608
vioscreen_line_gi
173.947485
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2247.755822
vioscreen_lycopene
759.9181507000001
vioscreen_lysine
4.569972375
vioscreen_m_egg
0.000328767
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
3.1847943869999997
vioscreen_m_mpf
5.814383562000001
vioscreen_m_nutsd
4.35800012
vioscreen_m_organ
0.879835657
vioscreen_m_poult
1.7497533509999998
vioscreen_m_soy
0.0
vioscreen_magnes
305.6803082
vioscreen_maltitol
0.0
vioscreen_maltose
0.097972609
vioscreen_mangan
4.72961593
vioscreen_mannitol
0.065150687
vioscreen_methhis3
18.986823100000002
vioscreen_methion
1.4937807680000001
vioscreen_mfa141
0.129561646
vioscreen_mfa161
1.1005204709999998
vioscreen_mfa181
32.46772795
vioscreen_mfa201
0.43427395799999996
vioscreen_mfa221
0.004356164
vioscreen_mfatot
34.20430223
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
11.0797263
vioscreen_nccglbr
46.8440229
vioscreen_nccglgr
32.76679688
vioscreen_niacin
24.82104024
vioscreen_niacineq
36.9270976
vioscreen_nitrogen
11.47383481
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.699342493
vioscreen_oxalic
246.4156892
vioscreen_oxalicm
322.0732021
vioscreen_pantothe
5.3926848110000005
vioscreen_pectins
2.351999946
vioscreen_pfa182
14.01558888
vioscreen_pfa183
0.657178111
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.183616429
vioscreen_pfa205
0.0075890409999999995
vioscreen_pfa225
0.012301369
vioscreen_pfa226
0.021452055
vioscreen_pfatot
15.08567262
vioscreen_phenylal
2.9751508319999997
vioscreen_phosphor
915.9946917999999
vioscreen_phytic
737.83125
vioscreen_pinitol
0.0
vioscreen_potass
1915.9208899999999
vioscreen_procdate
10/28/15
vioscreen_proline
3.171123515
vioscreen_protanim
44.59951038
vioscreen_protein
68.58764448
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.98824647
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
481.0
vioscreen_retinol
1700.191096
vioscreen_rgrain
0.0
vioscreen_ribofla
1.623589001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.15304
vioscreen_satoco
0.0
vioscreen_selenium
108.69443490000002
vioscreen_serine
3.0467669760000002
vioscreen_sfa100
0.228109595
vioscreen_sfa120
0.32928767800000003
vioscreen_sfa140
1.173232907
vioscreen_sfa160
11.67227365
vioscreen_sfa170
0.050684932
vioscreen_sfa180
4.896438222
vioscreen_sfa200
0.33599999799999997
vioscreen_sfa220
0.6723835570000001
vioscreen_sfa40
0.23120547800000002
vioscreen_sfa60
0.143013711
vioscreen_sfa80
0.09106848699999999
vioscreen_sfatot
20.18348004
vioscreen_sodium
2208.4705480000002
vioscreen_sorbitol
0.113780829
vioscreen_srvid
18503.0
vioscreen_starch
36.34019424
vioscreen_started
4/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.92279404
vioscreen_sweet_servings
0.023790000000000002
vioscreen_tagatose
0.105369861
vioscreen_tfa161t
0.035123289
vioscreen_tfa181t
1.154383578
vioscreen_tfa182t
0.129643824
vioscreen_tgrain
1.495890411
vioscreen_thiamin
0.828657511
vioscreen_threonin
2.559671146
vioscreen_time
19.0
vioscreen_totaltfa
1.3379726459999999
vioscreen_totcla
0.128465752
vioscreen_totfolat
276.24863010000007
vioscreen_totsugar
30.34830372
vioscreen_tryptoph
0.725178089
vioscreen_tyrosine
2.301424544
vioscreen_user_id
18503.0
vioscreen_v_drkgr
0.149205487
vioscreen_v_orange
0.0
vioscreen_v_other
0.0610137
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.047671232
vioscreen_v_total
0.257863021
vioscreen_valine
3.2584382360000004
vioscreen_veg5_day
0.4
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
0.5
vioscreen_visit
1.0
vioscreen_vita_iu
7851.119178
vioscreen_vita_rae
1809.389212
vioscreen_vita_re
1918.586986
vioscreen_vitb12
12.5403026
vioscreen_vitb6
1.5518904180000002
vioscreen_vitc
72.21323309
vioscreen_vitd
0.93556159
vioscreen_vitd2
0.0
vioscreen_vitd3
0.93556159
vioscreen_vitd_iu
37.42246361
vioscreen_vite_iu
16.51016428
vioscreen_vitk
113.2249251
vioscreen_water
2000.9652399999998
vioscreen_weight
Not provided
vioscreen_wgrain
1.495890411
vioscreen_whole_grain_servings
1.49641
vioscreen_xylitol
0.038465751
vioscreen_zinc
11.00531491
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
55.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never