American Gut Project; 10317.000026507
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633160
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:27:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026507
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26507
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
16.95
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-15
collection month
May
collection season
Spring
collection time
11:05
collection_timestamp
2015-05-15 11:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
14.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
98997d18df6bddb7fc786e2648edc53fa7f8bd2b0e26a4ef1ed1a3f6d37035adad0a94cddb55fa7f13c02cd8678ec573c012b8c629443203f98e8433f1eba8b3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.2
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026507
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
59c64e7450ff2fa6
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.160520559
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.991534675
vioscreen_addsugar
43.52649026
vioscreen_adsugtot
40.25109696
vioscreen_age
215.0
vioscreen_alanine
3.846137562
vioscreen_alcohol
2.476164517
vioscreen_alcohol_servings
0.16052
vioscreen_alphacar
6609.282192000001
vioscreen_alphtoce
18.34178082
vioscreen_alphtoco
16.42781063
vioscreen_arginine
4.775999304
vioscreen_ash
33.89629709
vioscreen_aspartam
0.0
vioscreen_aspartic
8.72906745
vioscreen_avcarb
243.22427230000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
27451.63836
vioscreen_betacryp
452.3666524
vioscreen_betaine
86.78458369
vioscreen_betatoco
0.464739698
vioscreen_biochana
0.010657534
vioscreen_bmi
Not provided
vioscreen_caffeine
318.882256
vioscreen_calcium
true
vioscreen_calcium_avg
714.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
5
vioscreen_calcium_from_dairy_servings
2.69022
vioscreen_calcium_servings
4.93112
vioscreen_calories
2104.614041
vioscreen_carbo
284.9361087
vioscreen_cholest
271.164405
vioscreen_choline
501.0151541
vioscreen_clac9t11
0.041315067999999996
vioscreen_clat10c12
0.006410959
vioscreen_copper
2.17449299
vioscreen_coumest
0.265506838
vioscreen_cystine
1.033534387
vioscreen_d_cheese
0.28227396899999996
vioscreen_d_milk
1.9026027730000001
vioscreen_d_tot_soym
2.690219158
vioscreen_d_total
2.690219158
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
8.05369756
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.859013806
vioscreen_discfat_oil
33.26800086
vioscreen_discfat_sol
20.13548133
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.007863013
vioscreen_f_citmlb
1.512109542
vioscreen_f_nj_citmlb
1.5021368990000001
vioscreen_f_nj_other
1.691671126
vioscreen_f_nj_total
3.1938356160000003
vioscreen_f_other
1.691671126
vioscreen_f_total
3.2038356830000003
vioscreen_fat
80.14005779
vioscreen_fiber
41.66147528
vioscreen_fibh2o
13.96509659
vioscreen_fibinso
27.73192155
vioscreen_finished
5/16/15
vioscreen_fish_servings
3.8340400000000003
vioscreen_fol_deqv
764.7345889999999
vioscreen_fol_nat
523.5520548000001
vioscreen_fol_syn
141.850107
vioscreen_formontn
0.005534247
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.4
vioscreen_fructose
34.46742027
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.454410919
vioscreen_g_total
2.9285480660000003
vioscreen_g_whl
1.474082132
vioscreen_galactos
0.790465723
vioscreen_gammtoco
11.83789196
vioscreen_gender
false
vioscreen_genistn
9.193507866000001
vioscreen_glac
108.96552870000001
vioscreen_gltc
122.53379709999999
vioscreen_glucose
34.43868525
vioscreen_glutamic
16.32320473
vioscreen_glycine
3.170986395
vioscreen_glycitn
1.3636164419999999
vioscreen_grams
4057.0363009999996
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
84.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
83.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.175698644
vioscreen_inositol
0.119780804
vioscreen_iron
17.26860552
vioscreen_isoleuc
3.688794614
vioscreen_isomalt
0.0
vioscreen_joules
8805.700685
vioscreen_juice_servings
0.020030000000000003
vioscreen_lactitol
0.0
vioscreen_lactose
31.32838453
vioscreen_legumes
0.003150685
vioscreen_leucine
6.541288527000001
vioscreen_line_gi
656.3348031
vioscreen_low_fat_dairy_serving
2.34816
vioscreen_lutzeax
9536.328767
vioscreen_lycopene
6495.832877000001
vioscreen_lysine
5.590273839
vioscreen_m_egg
0.801917842
vioscreen_m_fish_hi
1.148137006
vioscreen_m_fish_lo
1.036657548
vioscreen_m_frank
0.012301369
vioscreen_m_meat
0.016054795
vioscreen_m_mpf
2.24167146
vioscreen_m_nutsd
2.186986301
vioscreen_m_organ
0.0
vioscreen_m_poult
0.028520548
vioscreen_m_soy
0.947315122
vioscreen_magnes
571.6202483
vioscreen_maltitol
0.0
vioscreen_maltose
2.7665754760000003
vioscreen_mangan
5.3506019910000004
vioscreen_mannitol
0.340273964
vioscreen_methhis3
6.052684877999999
vioscreen_methion
1.811041343
vioscreen_mfa141
0.054410960999999994
vioscreen_mfa161
1.111068433
vioscreen_mfa181
34.96602098
vioscreen_mfa201
0.519205506
vioscreen_mfa221
0.21219179300000002
vioscreen_mfatot
37.02002355
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.00545404
vioscreen_nccglbr
192.7100813
vioscreen_nccglgr
134.79758130000002
vioscreen_niacin
26.033970999999998
vioscreen_niacineq
42.02392177
vioscreen_nitrogen
13.78988923
vioscreen_non_fried_fish_servings
3.8340400000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.595370024
vioscreen_oxalic
288.2471747
vioscreen_oxalicm
327.1864298
vioscreen_pantothe
10.15224743
vioscreen_pectins
8.785699379
vioscreen_pfa182
14.1609589
vioscreen_pfa183
1.947808085
vioscreen_pfa184
0.049041095
vioscreen_pfa204
0.11161642199999999
vioscreen_pfa205
0.18764385100000003
vioscreen_pfa225
0.05961643900000001
vioscreen_pfa226
0.351452051
vioscreen_pfatot
16.94515063
vioscreen_phenylal
3.9293697830000003
vioscreen_phosphor
1843.365925
vioscreen_phytic
952.8428082
vioscreen_pinitol
0.055342468
vioscreen_potass
6078.121918
vioscreen_procdate
10/28/15
vioscreen_proline
5.306054018999999
vioscreen_protanim
45.28005672
vioscreen_protein
84.5364619
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.24926423
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
445.0
vioscreen_retinol
516.76875
vioscreen_rgrain
1.68709583
vioscreen_ribofla
3.1977539060000004
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.23605
vioscreen_satoco
0.93860273
vioscreen_selenium
113.29808429999999
vioscreen_serine
4.366794533999999
vioscreen_sfa100
0.37156163
vioscreen_sfa120
1.2681918209999998
vioscreen_sfa140
1.556520561
vioscreen_sfa160
11.31679554
vioscreen_sfa170
0.070410956
vioscreen_sfa180
3.769726228
vioscreen_sfa200
0.279753447
vioscreen_sfa220
0.38821917
vioscreen_sfa40
0.269369841
vioscreen_sfa60
0.163589028
vioscreen_sfa80
0.24334248600000002
vioscreen_sfatot
20.08301183
vioscreen_sodium
5245.425685
vioscreen_sorbitol
1.325561607
vioscreen_srvid
18711.0
vioscreen_starch
61.21817744
vioscreen_started
5/16/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
53.69080158
vioscreen_sweet_servings
0.53288
vioscreen_tagatose
3.932547959
vioscreen_tfa161t
0.023534247
vioscreen_tfa181t
0.8560547709999999
vioscreen_tfa182t
0.183315058
vioscreen_tgrain
3.18002729
vioscreen_thiamin
1.713890431
vioscreen_threonin
3.247260608
vioscreen_time
33.0
vioscreen_totaltfa
1.0718081959999999
vioscreen_totcla
0.048904105
vioscreen_totfolat
665.402012
vioscreen_totsugar
160.15491219999998
vioscreen_tryptoph
0.9590411459999999
vioscreen_tyrosine
3.094493458
vioscreen_user_id
18711.0
vioscreen_v_drkgr
0.45257534899999996
vioscreen_v_orange
1.662274086
vioscreen_v_other
3.0739180889999997
vioscreen_v_potato
0.102657538
vioscreen_v_starcy
0.004684932
vioscreen_v_tomato
0.7228767290000001
vioscreen_v_total
6.01895869
vioscreen_valine
4.4956710189999995
vioscreen_veg5_day
13.1
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
12.0
vioscreen_visit
1.0
vioscreen_vita_iu
53360.93151
vioscreen_vita_rae
3098.642123
vioscreen_vita_re
5680.513699
vioscreen_vitb12
6.622685681
vioscreen_vitb6
3.10293136
vioscreen_vitc
295.3967038
vioscreen_vitd
12.52961526
vioscreen_vitd2
0.05019178
vioscreen_vitd3
12.4794253
vioscreen_vitd_iu
501.18461039999994
vioscreen_vite_iu
24.7640518
vioscreen_vitk
185.2336901
vioscreen_water
3592.991781
vioscreen_weight
Not provided
vioscreen_wgrain
1.4929042030000002
vioscreen_whole_grain_servings
1.4740799999999998
vioscreen_xylitol
0.054986306
vioscreen_zinc
13.83736756
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
47.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)