American Gut Project; 10317.000021155
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632440
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T22:50:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021155
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21155
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
30.9
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-29
collection month
January
collection season
Winter
collection time
07:00
collection_timestamp
2015-01-29 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1919.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
fac46871f46266a5ed9a7147b4a30894ed95f259dea94e66f7cf71520c573d86e4d7df534ebf4a065f70028417b9fa20fac1e09708a2096ff18f836f14a87c83
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000021155
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
08186975f5cda404
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.358027461
vioscreen_a_cal
182.5437928
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.94967091
vioscreen_addsugar
66.16331336
vioscreen_adsugtot
49.74152932
vioscreen_age
215.0
vioscreen_alanine
3.4047670969999997
vioscreen_alcohol
19.4166845
vioscreen_alcohol_servings
1.3580299999999998
vioscreen_alphacar
173.043247
vioscreen_alphtoce
6.6421380029999995
vioscreen_alphtoco
5.488055169
vioscreen_arginine
3.609095743
vioscreen_ash
15.75756234
vioscreen_aspartam
0.0
vioscreen_aspartic
6.220576038
vioscreen_avcarb
204.64079619999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
1798.397945
vioscreen_betacryp
301.4913955
vioscreen_betaine
95.82473245
vioscreen_betatoco
0.19246575300000002
vioscreen_biochana
0.01139726
vioscreen_bmi
Not provided
vioscreen_caffeine
118.0136344
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.3726599999999998
vioscreen_calcium_servings
3.2813199999999996
vioscreen_calories
1859.4157530000002
vioscreen_carbo
215.2010702
vioscreen_cholest
398.64199489999993
vioscreen_choline
424.9847175
vioscreen_clac9t11
0.157561639
vioscreen_clat10c12
0.028136985
vioscreen_copper
1.989178216
vioscreen_coumest
0.19454795100000002
vioscreen_cystine
0.8137532270000001
vioscreen_d_cheese
0.282136975
vioscreen_d_milk
2.079397541
vioscreen_d_tot_soym
2.372657588
vioscreen_d_total
2.372657588
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.566739686
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.326383742
vioscreen_discfat_oil
12.386795
vioscreen_discfat_sol
43.01849315
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.576712329
vioscreen_f_nj_citmlb
0.25317805
vioscreen_f_nj_other
0.18838354699999998
vioscreen_f_nj_total
0.44172597399999997
vioscreen_f_other
0.974273932
vioscreen_f_total
1.551150805
vioscreen_fat
67.03837222
vioscreen_fiber
10.53147809
vioscreen_fibh2o
3.8703014639999997
vioscreen_fibinso
6.643096506
vioscreen_finished
1/28/15
vioscreen_fish_servings
0.79538
vioscreen_fol_deqv
361.2831764
vioscreen_fol_nat
259.084375
vioscreen_fol_syn
60.13115903
vioscreen_formontn
0.000684932
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
28.16397153
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.500740114
vioscreen_g_total
2.8886852530000002
vioscreen_g_whl
0.387972604
vioscreen_galactos
0.447890357
vioscreen_gammtoco
5.490575837000001
vioscreen_gender
false
vioscreen_genistn
0.7507670359999999
vioscreen_glac
99.58125
vioscreen_gltc
103.8008027
vioscreen_glucose
28.07533979
vioscreen_glutamic
12.71887709
vioscreen_glycine
2.9062192319999998
vioscreen_glycitn
0.12534246599999999
vioscreen_grams
2168.323116
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
11.4
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.6
vioscreen_hei2010_sea_foods_plant_protiens
1.9
vioscreen_hei2010_sodium
6.4
vioscreen_hei2010_veg
2.5
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
0.8
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
5.6
vioscreen_hei_sat_fat
2.3
vioscreen_hei_score
53.2
vioscreen_hei_sodium
5.2
vioscreen_hei_sol_fat_alc_add_sug
5.7
vioscreen_hei_veg
2.5
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
1.948794347
vioscreen_inositol
0.230383573
vioscreen_iron
9.021122512
vioscreen_isoleuc
3.2830141669999997
vioscreen_isomalt
0.0
vioscreen_joules
7779.793151000001
vioscreen_juice_servings
2.21882
vioscreen_lactitol
0.0
vioscreen_lactose
29.16194349
vioscreen_legumes
0.012164383999999999
vioscreen_leucine
5.645863656
vioscreen_line_gi
469.5672517
vioscreen_low_fat_dairy_serving
0.17695999999999998
vioscreen_lutzeax
947.6511130000001
vioscreen_lycopene
2672.661986
vioscreen_lysine
5.118356365
vioscreen_m_egg
0.686493171
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.37424659200000004
vioscreen_m_frank
0.318547957
vioscreen_m_meat
1.2543835779999999
vioscreen_m_mpf
3.8541095889999997
vioscreen_m_nutsd
0.057780822
vioscreen_m_organ
0.586547935
vioscreen_m_poult
1.241342456
vioscreen_m_soy
0.018958906
vioscreen_magnes
253.4669735
vioscreen_maltitol
0.0
vioscreen_maltose
3.617671099
vioscreen_mangan
2.181452336
vioscreen_mannitol
0.081178085
vioscreen_methhis3
12.76046527
vioscreen_methion
1.6851781559999999
vioscreen_mfa141
0.092986319
vioscreen_mfa161
1.058575356
vioscreen_mfa181
20.52983465
vioscreen_mfa201
0.151671224
vioscreen_mfa221
0.007260274000000001
vioscreen_mfatot
22.07589095
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
5.065699246
vioscreen_nccglbr
159.1696169
vioscreen_nccglgr
111.3373395
vioscreen_niacin
17.28843911
vioscreen_niacineq
29.66087864
vioscreen_nitrogen
11.23586392
vioscreen_non_fried_fish_servings
0.79538
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.270794594
vioscreen_oxalic
87.64172731
vioscreen_oxalicm
81.99779003
vioscreen_pantothe
6.8372872970000005
vioscreen_pectins
1.245150715
vioscreen_pfa182
8.549999331
vioscreen_pfa183
1.1766027159999999
vioscreen_pfa184
0.001479452
vioscreen_pfa204
0.197862996
vioscreen_pfa205
0.021753425
vioscreen_pfa225
0.019369865
vioscreen_pfa226
0.052136987999999995
vioscreen_pfatot
10.17479465
vioscreen_phenylal
3.119123903
vioscreen_phosphor
1264.0843320000001
vioscreen_phytic
437.5324058
vioscreen_pinitol
0.035068494
vioscreen_potass
2563.003938
vioscreen_procdate
10/28/15
vioscreen_proline
4.686630458
vioscreen_protanim
56.67550835
vioscreen_protein
70.20741652
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
13.53107074
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
587.0
vioscreen_retinol
1577.665411
vioscreen_rgrain
1.8235341530000002
vioscreen_ribofla
2.484438376
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.98751
vioscreen_satoco
0.93860273
vioscreen_selenium
95.57852098
vioscreen_serine
3.33556159
vioscreen_sfa100
0.76323284
vioscreen_sfa120
0.987506689
vioscreen_sfa140
3.2774521080000003
vioscreen_sfa160
14.14188918
vioscreen_sfa170
0.131945216
vioscreen_sfa180
6.400986596
vioscreen_sfa200
0.07087672
vioscreen_sfa220
0.037424655
vioscreen_sfa40
0.8712328770000001
vioscreen_sfa60
0.603698689
vioscreen_sfa80
0.497780829
vioscreen_sfatot
28.05347817
vioscreen_sodium
2639.626541
vioscreen_sorbitol
0.439260279
vioscreen_srvid
17004.0
vioscreen_starch
48.14025043
vioscreen_started
1/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.51347924
vioscreen_sweet_servings
1.6674099999999998
vioscreen_tagatose
1.974246508
vioscreen_tfa161t
0.057698634000000006
vioscreen_tfa181t
1.565260127
vioscreen_tfa182t
0.397890399
vioscreen_tgrain
3.076356151
vioscreen_thiamin
1.041040875
vioscreen_threonin
2.762219071
vioscreen_time
26.0
vioscreen_totaltfa
2.156602833
vioscreen_totcla
0.186383558
vioscreen_totfolat
319.2151755
vioscreen_totsugar
124.407149
vioscreen_tryptoph
0.742849355
vioscreen_tyrosine
2.599040661
vioscreen_user_id
17004.0
vioscreen_v_drkgr
0.08849314900000001
vioscreen_v_orange
0.027589042999999997
vioscreen_v_other
0.6249040579999999
vioscreen_v_potato
0.156767127
vioscreen_v_starcy
0.034876711
vioscreen_v_tomato
0.103671233
vioscreen_v_total
1.036356134
vioscreen_valine
3.779205239
vioscreen_veg5_day
2.1
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.1
vioscreen_visit
1.0
vioscreen_vita_iu
8654.568493
vioscreen_vita_rae
1747.3035960000002
vioscreen_vita_re
1916.9443489999999
vioscreen_vitb12
12.18895816
vioscreen_vitb6
1.703397234
vioscreen_vitc
124.14417809999999
vioscreen_vitd
7.794301156
vioscreen_vitd2
0.051890412000000004
vioscreen_vitd3
7.742409567999999
vioscreen_vitd_iu
311.7720462
vioscreen_vite_iu
8.461286655
vioscreen_vitk
55.84159889
vioscreen_water
1804.667466
vioscreen_weight
Not provided
vioscreen_wgrain
1.2527670659999999
vioscreen_whole_grain_servings
0.38797
vioscreen_xylitol
0.011534245
vioscreen_zinc
10.0536173
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
81.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)