American Gut Project; 10317.000027563
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633506
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:52Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027563
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27563
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
16.98
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-19
collection month
May
collection season
Spring
collection time
09:16
collection_timestamp
2015-05-19 09:16
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
Canada
country of birth
Canada
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Not provided
elevation
112.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
Canada
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
188e2976eef324590cfbe9002f82134be5fb77f207ba740f9710fecbd4c132cb3318aa0037d22417be323e61116179e7b74a10373bbc44ed5b0dc13144859f68
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.3
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
-76.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000027563
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ON
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f773b7e5d413d75b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.322163955
vioscreen_addsugar
16.14314935
vioscreen_adsugtot
14.96399829
vioscreen_age
215.0
vioscreen_alanine
1.11706844
vioscreen_alcohol
0.0000822
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1103.05
vioscreen_alphtoce
20.84679206
vioscreen_alphtoco
18.95268488
vioscreen_arginine
1.9389313999999997
vioscreen_ash
15.10290695
vioscreen_aspartam
0.0
vioscreen_aspartic
3.631944965
vioscreen_avcarb
177.5445741
vioscreen_bcodeid
Not provided
vioscreen_betacar
8950.326027
vioscreen_betacryp
257.8525899
vioscreen_betaine
23.17863067
vioscreen_betatoco
0.612410872
vioscreen_biochana
0.00279452
vioscreen_bmi
Not provided
vioscreen_caffeine
5.239561818
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.04077
vioscreen_calcium_servings
0.75627
vioscreen_calories
1787.9851030000002
vioscreen_carbo
211.60445209999997
vioscreen_cholest
20.27586419
vioscreen_choline
161.3788634
vioscreen_clac9t11
0.007534246999999999
vioscreen_clat10c12
0.005479451999999999
vioscreen_copper
1.3904382990000002
vioscreen_coumest
0.000410959
vioscreen_cystine
0.33591781
vioscreen_d_cheese
0.0030410959999999996
vioscreen_d_milk
0.037726029
vioscreen_d_tot_soym
0.040767124
vioscreen_d_total
0.040767124
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.002246575
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.0950686939999996
vioscreen_discfat_oil
75.21393943
vioscreen_discfat_sol
4.279096211000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.5808493
vioscreen_f_nj_citmlb
0.570794511
vioscreen_f_nj_other
3.208383388
vioscreen_f_nj_total
3.779177815
vioscreen_f_other
3.208383388
vioscreen_f_total
3.78923273
vioscreen_fat
103.5114833
vioscreen_fiber
34.06101241
vioscreen_fibh2o
9.91342439
vioscreen_fibinso
24.27101081
vioscreen_finished
5/19/15
vioscreen_fish_servings
0.16346
vioscreen_fol_deqv
397.7135702
vioscreen_fol_nat
359.93625860000003
vioscreen_fol_syn
22.24353328
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.99726
vioscreen_frt5_day
4.0
vioscreen_frtsumm
7.6
vioscreen_fructose
27.82777986
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.7517533809999999
vioscreen_g_total
0.866849298
vioscreen_g_whl
0.115095886
vioscreen_galactos
0.114109583
vioscreen_gammtoco
16.18569938
vioscreen_gender
false
vioscreen_genistn
0.009863013
vioscreen_glac
84.34583155
vioscreen_gltc
94.95527611
vioscreen_glucose
28.76312607
vioscreen_glutamic
4.985671621
vioscreen_glycine
1.152739642
vioscreen_glycitn
0.000684932
vioscreen_grams
1304.286729
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
5.1
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.4
vioscreen_hei_score
72.4
vioscreen_hei_sodium
6.7
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
0.76720556
vioscreen_inositol
0.08994521
vioscreen_iron
6.558684717
vioscreen_isoleuc
0.92136983
vioscreen_isomalt
0.0
vioscreen_joules
7480.926712
vioscreen_juice_servings
0.02008
vioscreen_lactitol
0.0
vioscreen_lactose
0.756712362
vioscreen_legumes
0.0
vioscreen_leucine
1.707096131
vioscreen_line_gi
414.3443065
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2941.591096
vioscreen_lycopene
3086.15411
vioscreen_lysine
1.247233017
vioscreen_m_egg
0.012054795
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.093150685
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.093150685
vioscreen_m_nutsd
2.1819727230000003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0000822
vioscreen_magnes
307.9458262
vioscreen_maltitol
0.0
vioscreen_maltose
1.438383421
vioscreen_mangan
3.382876712
vioscreen_mannitol
0.306739744
vioscreen_methhis3
0.152657538
vioscreen_methion
0.364027426
vioscreen_mfa141
0.0007945210000000001
vioscreen_mfa161
1.046328944
vioscreen_mfa181
47.11085188
vioscreen_mfa201
0.50706854
vioscreen_mfa221
0.002219178
vioscreen_mfatot
48.72053189
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
18.95268488
vioscreen_nccglbr
151.48629069999998
vioscreen_nccglgr
105.9521297
vioscreen_niacin
14.19597335
vioscreen_niacineq
19.27772902
vioscreen_nitrogen
4.547397394
vioscreen_non_fried_fish_servings
0.16346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.1181643969999997
vioscreen_oxalic
238.34304369999998
vioscreen_oxalicm
227.53837760000002
vioscreen_pantothe
5.313697961
vioscreen_pectins
8.404164437
vioscreen_pfa182
29.82575182
vioscreen_pfa183
3.1089044439999998
vioscreen_pfa184
0.00060274
vioscreen_pfa204
0.001972603
vioscreen_pfa205
0.004575343
vioscreen_pfa225
0.00030137
vioscreen_pfa226
0.0038082190000000003
vioscreen_pfatot
32.96558754
vioscreen_phenylal
1.200657424
vioscreen_phosphor
612.2190068
vioscreen_phytic
640.5580478999999
vioscreen_pinitol
0.000027399999999999995
vioscreen_potass
3702.768493
vioscreen_procdate
10/28/15
vioscreen_proline
1.191780655
vioscreen_protanim
1.296931437
vioscreen_protein
27.28518033
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.99162029
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
437.0
vioscreen_retinol
24.68388806
vioscreen_rgrain
0.06772603099999999
vioscreen_ribofla
0.870383485
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.16033
vioscreen_satoco
0.0
vioscreen_selenium
37.88161655
vioscreen_serine
1.280575269
vioscreen_sfa100
0.029178084
vioscreen_sfa120
0.082219184
vioscreen_sfa140
0.18687671
vioscreen_sfa160
11.13564319
vioscreen_sfa170
0.032630137000000003
vioscreen_sfa180
3.1296433539999997
vioscreen_sfa200
0.40361645799999996
vioscreen_sfa220
0.475342466
vioscreen_sfa40
0.02758904
vioscreen_sfa60
0.015178081999999999
vioscreen_sfa80
0.012328767
vioscreen_sfatot
15.67986275
vioscreen_sodium
2234.4958899999997
vioscreen_sorbitol
0.12260275
vioscreen_srvid
18722.0
vioscreen_starch
70.8281143
vioscreen_started
5/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.77090379
vioscreen_sweet_servings
0.0913
vioscreen_tagatose
0.151452051
vioscreen_tfa161t
0.005671233
vioscreen_tfa181t
0.58441091
vioscreen_tfa182t
0.28991780699999997
vioscreen_tgrain
0.89493149
vioscreen_thiamin
0.857342446
vioscreen_threonin
0.8690958940000001
vioscreen_time
14.0
vioscreen_totaltfa
0.8782465690000001
vioscreen_totcla
0.01369863
vioscreen_totfolat
382.17979449999996
vioscreen_totsugar
82.29285103
vioscreen_tryptoph
0.308246581
vioscreen_tyrosine
0.7283014170000001
vioscreen_user_id
18722.0
vioscreen_v_drkgr
0.5775068729999999
vioscreen_v_orange
0.423315095
vioscreen_v_other
1.5146302109999998
vioscreen_v_potato
1.3740821319999998
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.203616438
vioscreen_v_total
4.093260381
vioscreen_valine
1.185972365
vioscreen_veg5_day
7.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
16132.5137
vioscreen_vita_rae
827.2501712000001
vioscreen_vita_re
1629.814212
vioscreen_vitb12
0.24619176199999998
vioscreen_vitb6
3.049259886
vioscreen_vitc
234.3594606
vioscreen_vitd
0.11367122699999999
vioscreen_vitd2
0.0
vioscreen_vitd3
0.11367122699999999
vioscreen_vitd_iu
4.546849081
vioscreen_vite_iu
28.27570099
vioscreen_vitk
248.47583480000003
vioscreen_water
957.2095034
vioscreen_weight
Not provided
vioscreen_wgrain
0.8272054590000001
vioscreen_whole_grain_servings
0.1151
vioscreen_xylitol
0.07402739900000001
vioscreen_zinc
4.504219285
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)