American Gut Project; 10317.000017620
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632394
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:43Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000017620
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
17620
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1979.0
bmi
26.26
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-02-23
collection month
February
collection season
Winter
collection time
12:25
collection_timestamp
2015-02-23 12:25
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southeast
elevation
2.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
0854cd7d904c725ad3328cd76c973751fff17861d36923227402fde736f784d7cdfe1001e68f34246b2cbce72777e7328cd91ad9d722daafa9bcdf9d9e17442b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
Diagnosed by a medical professional (doctor, physician assistant)
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
27.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-82.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
African American
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000017620
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
611ca820e3172871
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.471150605
vioscreen_addsugar
6.611232475
vioscreen_adsugtot
5.558273692
vioscreen_age
215.0
vioscreen_alanine
5.001808647
vioscreen_alcohol
0.0014246570000000002
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
3566.261301
vioscreen_alphtoce
15.31504174
vioscreen_alphtoco
14.91704436
vioscreen_arginine
5.462849155
vioscreen_ash
12.3271257
vioscreen_aspartam
0.0
vioscreen_aspartic
8.703259445
vioscreen_avcarb
128.9905073
vioscreen_bcodeid
Not provided
vioscreen_betacar
14076.9726
vioscreen_betacryp
205.35121999999998
vioscreen_betaine
39.06430062
vioscreen_betatoco
0.145205479
vioscreen_biochana
0.011890413
vioscreen_bmi
Not provided
vioscreen_caffeine
0.5056712529999999
vioscreen_calcium
true
vioscreen_calcium_avg
178.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
5
vioscreen_calcium_from_dairy_servings
0.02159
vioscreen_calcium_servings
0.94047
vioscreen_calories
1728.168493
vioscreen_carbo
150.18435359999998
vioscreen_cholest
194.8769692
vioscreen_choline
340.34428510000004
vioscreen_clac9t11
0.035260274
vioscreen_clat10c12
0.010328766
vioscreen_copper
0.912383615
vioscreen_coumest
0.004821918
vioscreen_cystine
1.052684962
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.021589041
vioscreen_d_tot_soym
0.021589041
vioscreen_d_total
0.021589041
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.008712328
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.608082142
vioscreen_discfat_oil
64.58523652
vioscreen_discfat_sol
8.254630645
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0009589039999999999
vioscreen_f_citmlb
0.764219185
vioscreen_f_nj_citmlb
0.747095897
vioscreen_f_nj_other
1.762383615
vioscreen_f_nj_total
2.5095071030000002
vioscreen_f_other
1.762383615
vioscreen_f_total
2.5266302240000003
vioscreen_fat
90.13609803
vioscreen_fiber
21.19580613
vioscreen_fibh2o
5.116548387
vioscreen_fibinso
16.25377916
vioscreen_finished
2/23/15
vioscreen_fish_servings
8.64308
vioscreen_fol_deqv
285.8875428
vioscreen_fol_nat
218.36860019999997
vioscreen_fol_syn
39.73583583
vioscreen_formontn
0.006575342
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
2.0
vioscreen_frtsumm
5.1
vioscreen_fructose
20.63301183
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.122218971
vioscreen_g_total
2.2534519140000002
vioscreen_g_whl
0.13123287
vioscreen_galactos
0.054712327000000005
vioscreen_gammtoco
3.31076727
vioscreen_gender
false
vioscreen_genistn
0.013342467
vioscreen_glac
66.32476991
vioscreen_gltc
73.65120398
vioscreen_glucose
17.14802681
vioscreen_glutamic
13.24841075
vioscreen_glycine
4.3604385169999995
vioscreen_glycitn
0.0
vioscreen_grams
1302.333305
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
77.5
vioscreen_hei_sodium
6.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
2.486164417
vioscreen_inositol
0.145479458
vioscreen_iron
9.083781705
vioscreen_isoleuc
3.918959025
vioscreen_isomalt
0.0
vioscreen_joules
7230.656848999999
vioscreen_juice_servings
0.0343
vioscreen_lactitol
0.0
vioscreen_lactose
0.31189040100000004
vioscreen_legumes
0.0
vioscreen_leucine
6.576986569
vioscreen_line_gi
366.82970889999996
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4950.521575
vioscreen_lycopene
552.6004281
vioscreen_lysine
6.968903172999999
vioscreen_m_egg
0.023698629
vioscreen_m_fish_hi
3.6476435410000003
vioscreen_m_fish_lo
1.277780862
vioscreen_m_frank
0.0
vioscreen_m_meat
2.099643822
vioscreen_m_mpf
8.974657534
vioscreen_m_nutsd
0.23131506899999998
vioscreen_m_organ
0.0
vioscreen_m_poult
1.949588974
vioscreen_m_soy
0.000410959
vioscreen_magnes
225.2149829
vioscreen_maltitol
0.0
vioscreen_maltose
1.484301423
vioscreen_mangan
3.019835255
vioscreen_mannitol
0.738821955
vioscreen_methhis3
33.31578286
vioscreen_methion
2.252712302
vioscreen_mfa141
0.0600548
vioscreen_mfa161
1.8222741530000002
vioscreen_mfa181
52.29427975
vioscreen_mfa201
0.783863057
vioscreen_mfa221
0.627780778
vioscreen_mfatot
55.84768836
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
14.91704436
vioscreen_nccglbr
107.5653574
vioscreen_nccglgr
75.23665989
vioscreen_niacin
23.91972656
vioscreen_niacineq
38.72767016
vioscreen_nitrogen
13.74413661
vioscreen_non_fried_fish_servings
8.64308
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.716602566
vioscreen_oxalic
178.16664169999999
vioscreen_oxalicm
168.0093215
vioscreen_pantothe
4.538876886000001
vioscreen_pectins
5.031040641000001
vioscreen_pfa182
9.481096158
vioscreen_pfa183
0.941150488
vioscreen_pfa184
0.143890412
vioscreen_pfa204
0.188082175
vioscreen_pfa205
0.46635616799999996
vioscreen_pfa225
0.19290412
vioscreen_pfa226
0.973972603
vioscreen_pfatot
12.56243846
vioscreen_phenylal
3.441671795
vioscreen_phosphor
961.0403252999998
vioscreen_phytic
306.16504710000004
vioscreen_pinitol
0.0
vioscreen_potass
2669.8845890000002
vioscreen_procdate
10/28/15
vioscreen_proline
3.5208218510000004
vioscreen_protanim
69.34572988
vioscreen_protein
85.4859161
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.14027451
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
551.0
vioscreen_retinol
86.88662778
vioscreen_rgrain
2.036630124
vioscreen_ribofla
0.8847670459999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.87877
vioscreen_satoco
0.0
vioscreen_selenium
100.02262409999999
vioscreen_serine
3.502548092
vioscreen_sfa100
0.019068493
vioscreen_sfa120
0.058794518
vioscreen_sfa140
0.637780762
vioscreen_sfa160
11.960958900000001
vioscreen_sfa170
0.078273972
vioscreen_sfa180
3.26983559
vioscreen_sfa200
0.286547956
vioscreen_sfa220
0.12260275
vioscreen_sfa40
0.011424658
vioscreen_sfa60
0.003780822
vioscreen_sfa80
0.00649315
vioscreen_sfatot
16.62882197
vioscreen_sodium
2293.1
vioscreen_sorbitol
1.045205479
vioscreen_srvid
17196.0
vioscreen_starch
50.68199914
vioscreen_started
2/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.96114887
vioscreen_sweet_servings
0.09314
vioscreen_tagatose
0.34304109299999996
vioscreen_tfa161t
0.04698630000000001
vioscreen_tfa181t
0.7276986740000001
vioscreen_tfa182t
0.15372602900000001
vioscreen_tgrain
2.1077807280000003
vioscreen_thiamin
1.065863121
vioscreen_threonin
3.6611505380000002
vioscreen_time
13.0
vioscreen_totaltfa
0.931561614
vioscreen_totcla
0.046739725
vioscreen_totfolat
258.1044307
vioscreen_totsugar
60.47065497
vioscreen_tryptoph
0.888904143
vioscreen_tyrosine
2.785945192
vioscreen_user_id
17196.0
vioscreen_v_drkgr
0.57624658
vioscreen_v_orange
0.901917842
vioscreen_v_other
0.790219158
vioscreen_v_potato
0.151945203
vioscreen_v_starcy
0.305506855
vioscreen_v_tomato
0.059397266
vioscreen_v_total
2.7852328369999997
vioscreen_valine
4.333753612
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
26893.45753
vioscreen_vita_rae
1417.118236
vioscreen_vita_re
2747.350856
vioscreen_vitb12
6.271150605
vioscreen_vitb6
2.16353442
vioscreen_vitc
142.9534247
vioscreen_vitd
17.10863121
vioscreen_vitd2
0.0
vioscreen_vitd3
17.10863121
vioscreen_vitd_iu
684.3452482999999
vioscreen_vite_iu
22.26150605
vioscreen_vitk
233.0880779
vioscreen_water
971.3306507000001
vioscreen_weight
Not provided
vioscreen_wgrain
0.07115068299999999
vioscreen_whole_grain_servings
0.13122999999999999
vioscreen_xylitol
0.028219181
vioscreen_zinc
8.026685574
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
69.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never