American Gut Project; 10317.000028079
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633556
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:56Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028079
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28079
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
24.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-22
collection month
June
collection season
Summer
collection time
17:09
collection_timestamp
2015-06-22 17:09
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
23.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
173.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
444b17542d57e1a6642acb872c6a4d76d084a6d24931a058088d7b9fe18dc46eea28223d7c6aa5f4f69ea5fab976b59beadeb2ecbd4ff8bab038f4610f615547
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028079
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
77f7d8b3195c675c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.879095877
vioscreen_a_cal
123.54726029999999
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.816246388
vioscreen_addsugar
18.81912591
vioscreen_adsugtot
17.82063089
vioscreen_age
215.0
vioscreen_alanine
2.842328633
vioscreen_alcohol
12.83797223
vioscreen_alcohol_servings
0.8791
vioscreen_alphacar
1257.513699
vioscreen_alphtoce
13.95835429
vioscreen_alphtoco
13.55810681
vioscreen_arginine
3.437095663
vioscreen_ash
21.51281972
vioscreen_aspartam
0.0
vioscreen_aspartic
6.277753103999999
vioscreen_avcarb
193.5505351
vioscreen_bcodeid
Not provided
vioscreen_betacar
21776.49726
vioscreen_betacryp
439.4673801
vioscreen_betaine
191.3229452
vioscreen_betatoco
0.134684931
vioscreen_biochana
0.03252055
vioscreen_bmi
Not provided
vioscreen_caffeine
408.33403250000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.28504
vioscreen_calcium_servings
2.53375
vioscreen_calories
1435.501712
vioscreen_carbo
232.83705049999998
vioscreen_cholest
105.6018836
vioscreen_choline
326.53987589999997
vioscreen_clac9t11
0.021972601
vioscreen_clat10c12
0.004328767
vioscreen_copper
1.859945386
vioscreen_coumest
0.110547941
vioscreen_cystine
0.612684945
vioscreen_d_cheese
0.23526026100000003
vioscreen_d_milk
0.049780822
vioscreen_d_tot_soym
0.285041077
vioscreen_d_total
0.285041077
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.145123291
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.577671333
vioscreen_discfat_oil
13.79882277
vioscreen_discfat_sol
9.11545176
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0037260270000000002
vioscreen_f_citmlb
2.369178082
vioscreen_f_nj_citmlb
1.724493157
vioscreen_f_nj_other
2.887808019
vioscreen_f_nj_total
4.612301343
vioscreen_f_other
2.887808019
vioscreen_f_total
5.256986435
vioscreen_fat
31.04844018
vioscreen_fiber
39.28778093
vioscreen_fibh2o
11.47087703
vioscreen_fibinso
27.81816406
vioscreen_finished
6/12/15
vioscreen_fish_servings
2.7117299999999998
vioscreen_fol_deqv
625.3353596
vioscreen_fol_nat
588.3838185
vioscreen_fol_syn
21.74145173
vioscreen_formontn
0.005753424
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.9
vioscreen_frtsumm
10.5
vioscreen_fructose
44.01040507
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
1.0685753390000001
vioscreen_g_total
1.134356104
vioscreen_g_whl
0.065780823
vioscreen_galactos
0.12953425400000002
vioscreen_gammtoco
3.411561898
vioscreen_gender
false
vioscreen_genistn
0.157780822
vioscreen_glac
91.64835188
vioscreen_gltc
104.6062179
vioscreen_glucose
42.13271083
vioscreen_glutamic
9.463670537
vioscreen_glycine
2.51813714
vioscreen_glycitn
0.006410959
vioscreen_grams
4767.397603
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
71.3
vioscreen_hei_sodium
0.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.48490425
vioscreen_inositol
0.42452054
vioscreen_iron
14.03314962
vioscreen_isoleuc
2.375095984
vioscreen_isomalt
0.0
vioscreen_joules
6006.139725999999
vioscreen_juice_servings
1.2894
vioscreen_lactitol
0.0
vioscreen_lactose
0.8306575409999999
vioscreen_legumes
0.362410956
vioscreen_leucine
3.871424176
vioscreen_line_gi
543.5181079
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
31178.18356
vioscreen_lycopene
9464.808219
vioscreen_lysine
3.831753665
vioscreen_m_egg
0.142712329
vioscreen_m_fish_hi
0.640219158
vioscreen_m_fish_lo
0.90506851
vioscreen_m_frank
0.06394520599999999
vioscreen_m_meat
0.40008218799999995
vioscreen_m_mpf
2.961123114
vioscreen_m_nutsd
0.1669589
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9518629940000001
vioscreen_m_soy
0.002164384
vioscreen_magnes
503.7059075
vioscreen_maltitol
0.0
vioscreen_maltose
1.7233149280000002
vioscreen_mangan
6.966548052
vioscreen_mannitol
0.70276715
vioscreen_methhis3
10.99627368
vioscreen_methion
1.114904283
vioscreen_mfa141
0.031041096
vioscreen_mfa161
0.5538904060000001
vioscreen_mfa181
12.92928751
vioscreen_mfa201
0.173123305
vioscreen_mfa221
0.078958903
vioscreen_mfatot
13.85857502
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.55810681
vioscreen_nccglbr
137.0962971
vioscreen_nccglgr
95.89248716
vioscreen_niacin
17.05131502
vioscreen_niacineq
28.37857181
vioscreen_nitrogen
9.264273866
vioscreen_non_fried_fish_servings
2.7117299999999998
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.421314982
vioscreen_oxalic
1415.0916949999998
vioscreen_oxalicm
1469.99161
vioscreen_pantothe
5.377726683
vioscreen_pectins
9.089206309
vioscreen_pfa182
4.0472331839999995
vioscreen_pfa183
1.126109502
vioscreen_pfa184
0.018136987
vioscreen_pfa204
0.081178085
vioscreen_pfa205
0.073698634
vioscreen_pfa225
0.033726026
vioscreen_pfa226
0.170219171
vioscreen_pfatot
5.6265196920000005
vioscreen_phenylal
2.369068386
vioscreen_phosphor
902.2382705
vioscreen_phytic
467.6631421
vioscreen_pinitol
0.000246575
vioscreen_potass
5386.632534
vioscreen_procdate
10/28/15
vioscreen_proline
2.743123428
vioscreen_protanim
27.27290507
vioscreen_protein
57.80827804
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.53561644
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
394.0
vioscreen_retinol
84.15419521
vioscreen_rgrain
0.928712359
vioscreen_ribofla
1.7609313130000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.8265200000000001
vioscreen_satoco
0.0
vioscreen_selenium
62.60056721
vioscreen_serine
2.424794153
vioscreen_sfa100
0.11471232599999999
vioscreen_sfa120
0.138465745
vioscreen_sfa140
0.60736987
vioscreen_sfa160
5.096739552
vioscreen_sfa170
0.029698627999999998
vioscreen_sfa180
1.571096091
vioscreen_sfa200
0.071479452
vioscreen_sfa220
0.047890415
vioscreen_sfa40
0.13263013699999998
vioscreen_sfa60
0.07200000200000001
vioscreen_sfa80
0.048164383
vioscreen_sfatot
8.083562313
vioscreen_sodium
2829.087158
vioscreen_sorbitol
1.4824382630000001
vioscreen_srvid
18882.0
vioscreen_starch
46.65446276
vioscreen_started
6/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.83150417
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.022246575
vioscreen_tfa161t
0.025863015
vioscreen_tfa181t
0.282109571
vioscreen_tfa182t
0.056328771
vioscreen_tgrain
0.9944656999999999
vioscreen_thiamin
1.14019165
vioscreen_threonin
2.178054601
vioscreen_time
22.0
vioscreen_totaltfa
0.366356168
vioscreen_totcla
0.026712329
vioscreen_totfolat
610.1252568
vioscreen_totsugar
118.08651540000001
vioscreen_tryptoph
0.681260284
vioscreen_tyrosine
1.793589135
vioscreen_user_id
18882.0
vioscreen_v_drkgr
1.956301504
vioscreen_v_orange
0.317972596
vioscreen_v_other
0.81569866
vioscreen_v_potato
0.427260266
vioscreen_v_starcy
0.025561643999999998
vioscreen_v_tomato
0.9227945409999999
vioscreen_v_total
4.465589549
vioscreen_valine
2.710054748
vioscreen_veg5_day
7.6
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
8.9
vioscreen_visit
1.0
vioscreen_vita_iu
37989.602739999995
vioscreen_vita_rae
1969.570377
vioscreen_vita_re
3854.987671
vioscreen_vitb12
1.742301544
vioscreen_vitb6
2.5106849980000003
vioscreen_vitc
314.9896618
vioscreen_vitd
4.501260167
vioscreen_vitd2
0.000219178
vioscreen_vitd3
4.501040775
vioscreen_vitd_iu
180.05040669999997
vioscreen_vite_iu
20.200606
vioscreen_vitk
1175.635702
vioscreen_water
4419.700685
vioscreen_weight
Not provided
vioscreen_wgrain
0.065753425
vioscreen_whole_grain_servings
0.06577999999999999
vioscreen_xylitol
0.09112329400000001
vioscreen_zinc
8.00857569
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)