American Gut Project; 10317.000023470
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632684
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023470
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
48.0
age_corrected
48.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23470
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1967.0
bmi
23.38
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
No
clinical condition
I do not have this condition
collection date
02/05/2015
collection month
February
collection season
Winter
collection time
11:35
collection_timestamp
2015-02-05 11:35
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Sweden
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
15.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
192.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
2e8a29986d5091da2c25b9cf2015fcc71faa876d2c065d325b0a51bf57e989a09d6b76aab764d8afa16861df3b4c2b90fc460e29e4366f8360b4341915329583
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
42.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-71.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000023470
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Regularly (3-5 times/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5320095b0d30553d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.355671086
vioscreen_a_cal
402.06113010000007
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
19.97895976
vioscreen_addsugar
89.54646297
vioscreen_adsugtot
83.23703981
vioscreen_age
215.0
vioscreen_alanine
6.405753692
vioscreen_alcohol
50.98630137
vioscreen_alcohol_servings
3.35567
vioscreen_alphacar
892.5849314999999
vioscreen_alphtoce
11.72821998
vioscreen_alphtoco
10.19432858
vioscreen_arginine
7.031179099
vioscreen_ash
22.1269344
vioscreen_aspartam
0.0
vioscreen_aspartic
11.39613656
vioscreen_avcarb
217.8261344
vioscreen_bcodeid
Not provided
vioscreen_betacar
3322.532534
vioscreen_betacryp
54.50973352
vioscreen_betaine
56.94753318
vioscreen_betatoco
0.301753423
vioscreen_biochana
0.009589041999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
40.14884953
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.05266
vioscreen_calcium_servings
3.5570699999999995
vioscreen_calories
2582.022432
vioscreen_carbo
229.2124358
vioscreen_cholest
400.75458050000003
vioscreen_choline
524.4772688
vioscreen_clac9t11
0.129835636
vioscreen_clat10c12
0.034356162
vioscreen_copper
1.114054892
vioscreen_coumest
0.094684935
vioscreen_cystine
1.45246582
vioscreen_d_cheese
0.460767145
vioscreen_d_milk
0.089999996
vioscreen_d_tot_soym
2.052657454
vioscreen_d_total
2.052657454
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
0.379123217
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.9027949080000002
vioscreen_discfat_oil
33.66235552
vioscreen_discfat_sol
34.05684932
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.303342469
vioscreen_f_nj_citmlb
0.080876714
vioscreen_f_nj_other
0.331917812
vioscreen_f_nj_total
0.41282194
vioscreen_f_other
0.331917812
vioscreen_f_total
0.635315109
vioscreen_fat
94.49590111
vioscreen_fiber
11.38726188
vioscreen_fibh2o
3.0706308860000004
vioscreen_fibinso
8.338657829
vioscreen_finished
2/5/15
vioscreen_fish_servings
3.08827
vioscreen_fol_deqv
300.2743793
vioscreen_fol_nat
216.51714469999996
vioscreen_fol_syn
49.27698523
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.3799
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.3
vioscreen_fructose
29.09361622
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.8733699430000001
vioscreen_g_total
1.8733699430000001
vioscreen_g_whl
0.0
vioscreen_galactos
1.9429040359999998
vioscreen_gammtoco
10.08671273
vioscreen_gender
false
vioscreen_genistn
0.38671227
vioscreen_glac
100.10607879999999
vioscreen_gltc
104.4102312
vioscreen_glucose
27.1554527
vioscreen_glutamic
20.59178082
vioscreen_glycine
5.598026808999999
vioscreen_glycitn
0.17819178300000002
vioscreen_grams
2668.948973
vioscreen_hei2010_dairy
6.1
vioscreen_hei2010_empty_calories
12.0
vioscreen_hei2010_fatty_acids
6.9
vioscreen_hei2010_fruit
1.5
vioscreen_hei2010_greens_beans
1.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
58.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.4
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
2.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
1.7
vioscreen_hei_fruit
1.5
vioscreen_hei_grains
1.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.1
vioscreen_hei_non_juice_frt
2.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
54.7
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
6.4
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.530329289
vioscreen_inositol
0.292328759
vioscreen_iron
12.04583423
vioscreen_isoleuc
5.7066299229999995
vioscreen_isomalt
0.0
vioscreen_joules
10803.1774
vioscreen_juice_servings
0.44498999999999994
vioscreen_lactitol
0.0
vioscreen_lactose
23.88739566
vioscreen_legumes
0.016438356
vioscreen_leucine
9.767835643
vioscreen_line_gi
345.7375428
vioscreen_low_fat_dairy_serving
1.52159
vioscreen_lutzeax
1564.1505140000002
vioscreen_lycopene
3762.1017119999997
vioscreen_lysine
9.625234107
vioscreen_m_egg
0.61208216
vioscreen_m_fish_hi
1.057726047
vioscreen_m_fish_lo
0.702219171
vioscreen_m_frank
2.887123421
vioscreen_m_meat
4.048821771
vioscreen_m_mpf
10.42298601
vioscreen_m_nutsd
1.113671206
vioscreen_m_organ
0.0
vioscreen_m_poult
1.727095931
vioscreen_m_soy
0.006547945
vioscreen_magnes
324.0933433
vioscreen_maltitol
0.0
vioscreen_maltose
1.344630077
vioscreen_mangan
2.37142451
vioscreen_mannitol
0.17994520600000002
vioscreen_methhis3
37.88378104
vioscreen_methion
3.099068921
vioscreen_mfa141
0.144602747
vioscreen_mfa161
1.974137314
vioscreen_mfa181
36.74057684
vioscreen_mfa201
0.5452054789999999
vioscreen_mfa221
0.18361645
vioscreen_mfatot
39.85625268
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
9.878630003
vioscreen_nccglbr
164.8569777
vioscreen_nccglgr
115.33013700000001
vioscreen_niacin
26.80460188
vioscreen_niacineq
46.03604452
vioscreen_nitrogen
19.205343
vioscreen_non_fried_fish_servings
3.08827
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.355178457
vioscreen_oxalic
134.2349636
vioscreen_oxalicm
126.928125
vioscreen_pantothe
6.544658337
vioscreen_pectins
2.381040975
vioscreen_pfa182
16.15054581
vioscreen_pfa183
1.751781056
vioscreen_pfa184
0.042630138
vioscreen_pfa204
0.233095895
vioscreen_pfa205
0.154931505
vioscreen_pfa225
0.080520551
vioscreen_pfa226
0.327424663
vioscreen_pfatot
18.88265598
vioscreen_phenylal
5.274465566
vioscreen_phosphor
1737.0953769999999
vioscreen_phytic
401.57016269999997
vioscreen_pinitol
0.005945206
vioscreen_potass
3658.1171229999995
vioscreen_procdate
10/28/15
vioscreen_proline
7.2086305379999995
vioscreen_protanim
102.8943172
vioscreen_protein
119.51378419999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.59517605
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
569.0
vioscreen_retinol
265.3128425
vioscreen_rgrain
1.743452015
vioscreen_ribofla
1.94635595
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7621099999999998
vioscreen_satoco
0.7015616640000001
vioscreen_selenium
148.4465646
vioscreen_serine
5.522958582999999
vioscreen_sfa100
0.35813699
vioscreen_sfa120
0.41728770600000004
vioscreen_sfa140
2.032822032
vioscreen_sfa160
16.41093215
vioscreen_sfa170
0.110684925
vioscreen_sfa180
6.98999893
vioscreen_sfa200
0.207780833
vioscreen_sfa220
0.226876727
vioscreen_sfa40
0.387589044
vioscreen_sfa60
0.204684929
vioscreen_sfa80
0.139424656
vioscreen_sfatot
27.92659996
vioscreen_sodium
4148.084589
vioscreen_sorbitol
0.090684927
vioscreen_srvid
17096.0
vioscreen_starch
59.27583476
vioscreen_started
2/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
52.45877033
vioscreen_sweet_servings
1.2842799999999999
vioscreen_tagatose
11.41043852
vioscreen_tfa161t
0.085863025
vioscreen_tfa181t
1.4855341659999999
vioscreen_tfa182t
0.32690413
vioscreen_tgrain
1.94693152
vioscreen_thiamin
1.404821945
vioscreen_threonin
4.902986208
vioscreen_time
28.0
vioscreen_totaltfa
1.9285478980000001
vioscreen_totcla
0.165369896
vioscreen_totfolat
265.7940925
vioscreen_totsugar
131.4064105
vioscreen_tryptoph
1.154712416
vioscreen_tyrosine
4.3619455
vioscreen_user_id
17096.0
vioscreen_v_drkgr
0.17728766899999998
vioscreen_v_orange
0.150712335
vioscreen_v_other
0.608082142
vioscreen_v_potato
0.8252601940000001
vioscreen_v_starcy
0.130684934
vioscreen_v_tomato
0.43112324799999996
vioscreen_v_total
2.323177808
vioscreen_valine
6.646356619
vioscreen_veg5_day
3.2
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
7209.056164
vioscreen_vita_rae
581.6536387
vioscreen_vita_re
897.9925514
vioscreen_vitb12
7.2259999729999995
vioscreen_vitb6
2.547424484
vioscreen_vitc
80.34637735
vioscreen_vitd
7.701891588
vioscreen_vitd2
0.001643836
vioscreen_vitd3
7.700248154
vioscreen_vitd_iu
308.07566349999996
vioscreen_vite_iu
15.44323496
vioscreen_vitk
98.96865368
vioscreen_water
2167.365068
vioscreen_weight
Not provided
vioscreen_wgrain
0.203479443
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.052191779
vioscreen_zinc
15.88660237
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)