American Gut Project; 10317.000027826
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633232
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027826
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27826
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1980.0
bmi
19.74
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-18
collection month
May
collection season
Spring
collection time
09:45
collection_timestamp
2015-05-18 09:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
99.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
34c9cabd949bee246bcb83f26e0429140d2b7b75f6d96d6c6199eec6f6d66eed3441216acc417c1d51ba480de3ae95f03412c5c0d0d8b6ebe2e8af5a1ebb2df5
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-76.7
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027826
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a19f0aa4332a41b1
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052520548
vioscreen_a_cal
6.373205399
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.628054768
vioscreen_addsugar
13.04559075
vioscreen_adsugtot
11.61805437
vioscreen_age
215.0
vioscreen_alanine
4.474985954
vioscreen_alcohol
0.79690418
vioscreen_alcohol_servings
0.052520000000000004
vioscreen_alphacar
2558.971404
vioscreen_alphtoce
19.02866278
vioscreen_alphtoco
17.66463238
vioscreen_arginine
5.245697774
vioscreen_ash
20.65756234
vioscreen_aspartam
0.0
vioscreen_aspartic
8.449781277
vioscreen_avcarb
128.1065176
vioscreen_bcodeid
Not provided
vioscreen_betacar
16882.13836
vioscreen_betacryp
125.04599740000002
vioscreen_betaine
70.92279003
vioscreen_betatoco
0.428027386
vioscreen_biochana
0.013753426000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
48.42890625
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.08756
vioscreen_calcium_servings
1.49126
vioscreen_calories
2006.7726030000001
vioscreen_carbo
154.8867937
vioscreen_cholest
259.2884204
vioscreen_choline
348.5643193
vioscreen_clac9t11
0.211698621
vioscreen_clat10c12
0.047835619
vioscreen_copper
1.4272603069999998
vioscreen_coumest
0.003287671
vioscreen_cystine
0.9439177209999999
vioscreen_d_cheese
0.038849312999999996
vioscreen_d_milk
0.048684933
vioscreen_d_tot_soym
0.087561641
vioscreen_d_total
0.087561641
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.49879447200000004
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.988575389
vioscreen_discfat_oil
61.39074807
vioscreen_discfat_sol
42.04655126
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001589041
vioscreen_f_citmlb
0.386630165
vioscreen_f_nj_citmlb
0.380137028
vioscreen_f_nj_other
1.24399991
vioscreen_f_nj_total
1.624164236
vioscreen_f_other
1.459945052
vioscreen_f_total
1.84663019
vioscreen_fat
123.99773119999999
vioscreen_fiber
26.69503692
vioscreen_fibh2o
6.173725117999999
vioscreen_fibinso
20.5975907
vioscreen_finished
5/18/15
vioscreen_fish_servings
4.76462
vioscreen_fol_deqv
380.59952910000004
vioscreen_fol_nat
325.4392765
vioscreen_fol_syn
32.46712329
vioscreen_formontn
0.005232877
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.28493
vioscreen_frt5_day
2.3
vioscreen_frtsumm
3.7
vioscreen_fructose
20.29764154
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.188575306
vioscreen_g_total
1.188575306
vioscreen_g_whl
0.0
vioscreen_galactos
0.192958884
vioscreen_gammtoco
10.65410959
vioscreen_gender
false
vioscreen_genistn
0.540328812
vioscreen_glac
61.42876712
vioscreen_gltc
70.35386344
vioscreen_glucose
17.38553885
vioscreen_glutamic
12.78134097
vioscreen_glycine
3.974547504
vioscreen_glycitn
0.289013693
vioscreen_grams
3251.325342
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
18.7
vioscreen_hei2010_fatty_acids
7.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
60.9
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
19.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.25956145
vioscreen_inositol
0.155041117
vioscreen_iron
10.7463011
vioscreen_isoleuc
3.57783571
vioscreen_isomalt
0.0
vioscreen_joules
8396.337671
vioscreen_juice_servings
0.44493
vioscreen_lactitol
0.0
vioscreen_lactose
0.792109576
vioscreen_legumes
0.072493148
vioscreen_leucine
6.0240000270000005
vioscreen_line_gi
371.7161387
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
12921.48767
vioscreen_lycopene
1508.9085619999998
vioscreen_lysine
6.163863843
vioscreen_m_egg
0.024657534
vioscreen_m_fish_hi
1.007123304
vioscreen_m_fish_lo
1.708082225
vioscreen_m_frank
0.354547955
vioscreen_m_meat
1.906876739
vioscreen_m_mpf
7.502876177
vioscreen_m_nutsd
1.121315065
vioscreen_m_organ
0.0
vioscreen_m_poult
2.526246622
vioscreen_m_soy
0.0019178079999999998
vioscreen_magnes
323.47029110000005
vioscreen_maltitol
0.0
vioscreen_maltose
1.987013725
vioscreen_mangan
3.379287176
vioscreen_mannitol
0.496931478
vioscreen_methhis3
27.43627462
vioscreen_methion
1.933863141
vioscreen_mfa141
0.081369865
vioscreen_mfa161
1.829780641
vioscreen_mfa181
50.38166738
vioscreen_mfa201
0.556273912
vioscreen_mfa221
0.111123291
vioscreen_mfatot
53.17622003
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.57676985
vioscreen_nccglbr
105.9813463
vioscreen_nccglgr
74.13485124
vioscreen_niacin
22.33871201
vioscreen_niacineq
36.66922892
vioscreen_nitrogen
12.923589999999999
vioscreen_non_fried_fish_servings
4.76462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.762959185
vioscreen_oxalic
452.2882705
vioscreen_oxalicm
457.6199058
vioscreen_pantothe
4.5857813169999995
vioscreen_pectins
5.839013003
vioscreen_pfa182
22.67383883
vioscreen_pfa183
2.266904564
vioscreen_pfa184
0.02772603
vioscreen_pfa204
0.157835618
vioscreen_pfa205
0.129616442
vioscreen_pfa225
0.060630129000000005
vioscreen_pfa226
0.27934244199999997
vioscreen_pfatot
25.72381475
vioscreen_phenylal
3.280711218
vioscreen_phosphor
1013.1829619999999
vioscreen_phytic
530.0596747
vioscreen_pinitol
0.003561644
vioscreen_potass
3421.427397
vioscreen_procdate
10/28/15
vioscreen_proline
3.5501635410000003
vioscreen_protanim
57.04353061
vioscreen_protein
79.94186109
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.89988763
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
440.0
vioscreen_retinol
288.4675942
vioscreen_rgrain
0.369095936
vioscreen_ribofla
1.086219181
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.31901
vioscreen_satoco
0.195260265
vioscreen_selenium
100.2043236
vioscreen_serine
3.3429042030000002
vioscreen_sfa100
0.88257555
vioscreen_sfa120
0.9495890579999999
vioscreen_sfa140
3.103178176
vioscreen_sfa160
20.20723191
vioscreen_sfa170
0.251205444
vioscreen_sfa180
8.115588881
vioscreen_sfa200
0.339999954
vioscreen_sfa220
0.26350685
vioscreen_sfa40
1.0864384059999999
vioscreen_sfa60
0.6678081770000001
vioscreen_sfa80
0.40252054299999995
vioscreen_sfatot
36.46670323
vioscreen_sodium
3896.206849
vioscreen_sorbitol
1.001808313
vioscreen_srvid
18719.0
vioscreen_starch
52.19608305
vioscreen_started
5/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.08575342300000001
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.94525899
vioscreen_sweet_servings
0.16604000000000002
vioscreen_tagatose
0.739123284
vioscreen_tfa161t
0.049178079000000006
vioscreen_tfa181t
1.857233251
vioscreen_tfa182t
0.398739749
vioscreen_tgrain
1.167205476
vioscreen_thiamin
1.06879448
vioscreen_threonin
3.3001093619999997
vioscreen_time
28.0
vioscreen_totaltfa
2.328328841
vioscreen_totcla
0.25986303
vioscreen_totfolat
357.90642119999995
vioscreen_totsugar
60.73690069
vioscreen_tryptoph
0.860219292
vioscreen_tyrosine
2.62399986
vioscreen_user_id
18719.0
vioscreen_v_drkgr
0.76013702
vioscreen_v_orange
0.716685005
vioscreen_v_other
1.739178216
vioscreen_v_potato
0.9202465320000001
vioscreen_v_starcy
0.46063015
vioscreen_v_tomato
0.11391780300000001
vioscreen_v_total
4.710875963
vioscreen_valine
3.933233225
vioscreen_veg5_day
8.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
9.4
vioscreen_visit
1.0
vioscreen_vita_iu
31334.26575
vioscreen_vita_rae
1807.1488010000003
vioscreen_vita_re
3325.826712
vioscreen_vitb12
3.748794347
vioscreen_vitb6
2.397780661
vioscreen_vitc
165.4488335
vioscreen_vitd
7.021204784
vioscreen_vitd2
0.0
vioscreen_vitd3
7.021204784
vioscreen_vitd_iu
280.84819139999996
vioscreen_vite_iu
26.42358733
vioscreen_vitk
547.5943493
vioscreen_water
2883.1089039999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.798109582
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.037534246
vioscreen_zinc
9.568932604
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never