American Gut Project; 10317.000031791
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634339
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031791
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
76.0
age_corrected
76.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031791
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1939.0
bmi
Not provided
bmi_cat
Not provided
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-08-17
collection month
August
collection season
Summer
collection time
07:20
collection_timestamp
2015-08-17 07:20
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1545.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
Not provided
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fa3463c3ad2736aa4bbcc7d596796183b7b0d1cb9c9d10fcb1cc011aed509bb84c23cc82b3d5413ab572fab0bfd8289e74dcd69c82e2d9169623af9601678436
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.1
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031791
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
c8abee31d1873399
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.953780501000001
vioscreen_addsugar
25.32041149
vioscreen_adsugtot
24.33742509
vioscreen_age
215.0
vioscreen_alanine
3.6096438889999996
vioscreen_alcohol
0.000520548
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
82.5432363
vioscreen_alphtoce
6.605670751
vioscreen_alphtoco
6.313753478
vioscreen_arginine
3.7825476239999998
vioscreen_ash
13.20789009
vioscreen_aspartam
0.0
vioscreen_aspartic
6.201177895
vioscreen_avcarb
70.46194349
vioscreen_bcodeid
Not provided
vioscreen_betacar
13496.27123
vioscreen_betacryp
18.81534273
vioscreen_betaine
74.31956336
vioscreen_betatoco
0.053780825
vioscreen_biochana
0.000849315
vioscreen_bmi
Not provided
vioscreen_caffeine
1.0750411359999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.82181
vioscreen_calcium_servings
2.22923
vioscreen_calories
896.3379281
vioscreen_carbo
84.90095783
vioscreen_cholest
358.21363439999993
vioscreen_choline
425.2785103
vioscreen_clac9t11
0.05709589599999999
vioscreen_clat10c12
0.018931506
vioscreen_copper
1.434822145
vioscreen_coumest
0.0
vioscreen_cystine
0.791013702
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.072109588
vioscreen_d_tot_soym
0.8218082790000001
vioscreen_d_total
0.8218082790000001
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.015260273999999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.628986348
vioscreen_discfat_oil
2.084739873
vioscreen_discfat_sol
13.59413661
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000328767
vioscreen_f_citmlb
0.407643817
vioscreen_f_nj_citmlb
0.401287675
vioscreen_f_nj_other
0.455205505
vioscreen_f_nj_total
0.856465713
vioscreen_f_other
0.455205505
vioscreen_f_total
0.862821898
vioscreen_fat
35.31241438
vioscreen_fiber
14.43917755
vioscreen_fibh2o
2.4465206619999997
vioscreen_fibinso
12.08348004
vioscreen_finished
8/15/15
vioscreen_fish_servings
1.87615
vioscreen_fol_deqv
349.3146404
vioscreen_fol_nat
347.72208900000004
vioscreen_fol_syn
0.938109599
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.7
vioscreen_fructose
9.480630619
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.07021918099999999
vioscreen_g_total
0.07021918099999999
vioscreen_g_whl
0.0
vioscreen_galactos
0.9479177809999999
vioscreen_gammtoco
2.633068346
vioscreen_gender
false
vioscreen_genistn
0.003863014
vioscreen_glac
22.81808112
vioscreen_gltc
24.85567209
vioscreen_glucose
9.188958155
vioscreen_glutamic
10.07572506
vioscreen_glycine
3.1065757439999997
vioscreen_glycitn
0.0
vioscreen_grams
2436.714384
vioscreen_hei2010_dairy
7.1
vioscreen_hei2010_empty_calories
16.3
vioscreen_hei2010_fatty_acids
2.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
1.9
vioscreen_hei_sat_fat
4.6
vioscreen_hei_score
61.9
vioscreen_hei_sodium
1.4
vioscreen_hei_sol_fat_alc_add_sug
16.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.8610139190000001
vioscreen_inositol
0.074904105
vioscreen_iron
8.809726161
vioscreen_isoleuc
3.02682169
vioscreen_isomalt
0.0
vioscreen_joules
3750.278082
vioscreen_juice_servings
0.012709999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
11.82465753
vioscreen_legumes
0.0
vioscreen_leucine
5.181780755
vioscreen_line_gi
100.86941350000001
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
17287.65616
vioscreen_lycopene
820.4041952
vioscreen_lysine
5.1778086210000005
vioscreen_m_egg
1.0169314870000001
vioscreen_m_fish_hi
1.069123318
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.018273973
vioscreen_m_meat
3.6765481189999996
vioscreen_m_mpf
5.079780474
vioscreen_m_nutsd
0.03630137
vioscreen_m_organ
0.315835613
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
222.7636986
vioscreen_maltitol
0.0
vioscreen_maltose
1.306657514
vioscreen_mangan
1.8480821580000002
vioscreen_mannitol
0.217342471
vioscreen_methhis3
18.94005378
vioscreen_methion
1.6465479180000002
vioscreen_mfa141
0.127917804
vioscreen_mfa161
1.096739803
vioscreen_mfa181
12.55276648
vioscreen_mfa201
0.232054786
vioscreen_mfa221
0.222465766
vioscreen_mfatot
14.38537029
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
6.313753478
vioscreen_nccglbr
44.89589041
vioscreen_nccglgr
31.40353703
vioscreen_niacin
12.95643862
vioscreen_niacineq
23.04457406
vioscreen_nitrogen
10.42895842
vioscreen_non_fried_fish_servings
1.87615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.218465727
vioscreen_oxalic
506.92080480000004
vioscreen_oxalicm
513.4267123
vioscreen_pantothe
4.588438771
vioscreen_pectins
3.782630231
vioscreen_pfa182
2.6920276380000003
vioscreen_pfa183
0.661726024
vioscreen_pfa184
0.046328767
vioscreen_pfa204
0.174054812
vioscreen_pfa205
0.14443836
vioscreen_pfa225
0.062328767
vioscreen_pfa226
0.304383578
vioscreen_pfatot
4.182821864
vioscreen_phenylal
2.831863027
vioscreen_phosphor
906.5972603
vioscreen_phytic
86.23761772
vioscreen_pinitol
0.0
vioscreen_potass
2456.689384
vioscreen_procdate
10/28/15
vioscreen_proline
3.542767083
vioscreen_protanim
54.5809878
vioscreen_protein
65.05418985
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
10.45969807
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
197.0
vioscreen_retinol
717.0223459
vioscreen_rgrain
0.040602739
vioscreen_ribofla
1.567205225
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.43318
vioscreen_satoco
0.0
vioscreen_selenium
74.30233305
vioscreen_serine
3.0472331839999995
vioscreen_sfa100
0.079753426
vioscreen_sfa120
0.089616436
vioscreen_sfa140
0.786849265
vioscreen_sfa160
7.2452603270000004
vioscreen_sfa170
0.092767125
vioscreen_sfa180
3.481177761
vioscreen_sfa200
0.021534247000000003
vioscreen_sfa220
0.010356165
vioscreen_sfa40
0.072547944
vioscreen_sfa60
0.032328768
vioscreen_sfa80
0.026219177000000003
vioscreen_sfatot
12.0480549
vioscreen_sodium
1647.289897
vioscreen_sorbitol
0.256438331
vioscreen_srvid
20413.0
vioscreen_starch
5.65539718
vioscreen_started
8/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.65802654
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
6.068410879
vioscreen_tfa161t
0.041205478999999996
vioscreen_tfa181t
1.156465881
vioscreen_tfa182t
0.180027395
vioscreen_tgrain
0.040602739
vioscreen_thiamin
0.660712297
vioscreen_threonin
2.703150752
vioscreen_time
13.0
vioscreen_totaltfa
1.384383445
vioscreen_totcla
0.07580821900000001
vioscreen_totfolat
348.6601884
vioscreen_totsugar
57.49537136
vioscreen_tryptoph
0.606082195
vioscreen_tyrosine
2.332054828
vioscreen_user_id
20413.0
vioscreen_v_drkgr
1.62295875
vioscreen_v_orange
0.20679453
vioscreen_v_other
1.481863027
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.12378082300000001
vioscreen_v_total
3.4353967119999997
vioscreen_valine
3.6050135780000003
vioscreen_veg5_day
6.6
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
24966.79452
vioscreen_vita_rae
1845.935616
vioscreen_vita_re
2974.8482879999997
vioscreen_vitb12
8.937808353
vioscreen_vitb6
1.464328546
vioscreen_vitc
113.8251284
vioscreen_vitd
6.2791497220000005
vioscreen_vitd2
0.0
vioscreen_vitd3
6.2791497220000005
vioscreen_vitd_iu
251.1659889
vioscreen_vite_iu
9.421180035
vioscreen_vitk
724.0248288
vioscreen_water
2248.717295
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.035452054
vioscreen_zinc
10.18254762
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
49.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)