American Gut Project; 10317.000031004
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634232
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031004
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031004
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
17.75
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-21
collection month
July
collection season
Summer
collection time
08:00
collection_timestamp
2015-07-21 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
400.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
f1fae714bb468774d4331f9b80cb71dc1ea9efee2b969d9a9aae31b9e60aaa44fee48469cee06b62a21a38b746a44597b8e85d23aacfa9e8c468c0c95ff5941c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-85.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031004
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TN
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Daily
survey_id
cc10455acc762110
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.6007672
vioscreen_addsugar
53.17832834
vioscreen_adsugtot
47.89860338
vioscreen_age
215.0
vioscreen_alanine
1.679123301
vioscreen_alcohol
0.00309589
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1811.4431510000002
vioscreen_alphtoce
18.32041016
vioscreen_alphtoco
17.10268488
vioscreen_arginine
2.099917895
vioscreen_ash
19.69221827
vioscreen_aspartam
0.0
vioscreen_aspartic
4.3743836289999996
vioscreen_avcarb
153.88182790000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
19571.20274
vioscreen_betacryp
89.69444028
vioscreen_betaine
32.88712543
vioscreen_betatoco
0.176109586
vioscreen_biochana
0.028465752
vioscreen_bmi
Not provided
vioscreen_caffeine
124.77251709999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.15786
vioscreen_calcium_servings
2.01989
vioscreen_calories
1745.4506850000002
vioscreen_carbo
194.2873716
vioscreen_cholest
27.39394531
vioscreen_choline
233.44584759999998
vioscreen_clac9t11
0.007178082
vioscreen_clat10c12
0.004109589
vioscreen_copper
1.789890404
vioscreen_coumest
0.00005479999999999999
vioscreen_cystine
0.397123279
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.157863011
vioscreen_d_tot_soym
0.157863011
vioscreen_d_total
0.157863011
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.011424658
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8695068359999999
vioscreen_discfat_oil
82.94468108
vioscreen_discfat_sol
7.272848887
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003479452
vioscreen_f_citmlb
0.966383508
vioscreen_f_nj_citmlb
0.963342452
vioscreen_f_nj_other
0.608904068
vioscreen_f_nj_total
1.57230141
vioscreen_f_other
0.608904068
vioscreen_f_total
1.575342466
vioscreen_fat
100.0092787
vioscreen_fiber
40.40789009
vioscreen_fibh2o
8.32523277
vioscreen_fibinso
32.13021458
vioscreen_finished
7/17/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
545.1419949
vioscreen_fol_nat
526.3240582
vioscreen_fol_syn
11.07468496
vioscreen_formontn
0.004520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.2
vioscreen_fructose
18.32115127
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.945342516
vioscreen_g_total
0.945342516
vioscreen_g_whl
0.0
vioscreen_galactos
0.376767135
vioscreen_gammtoco
11.36468456
vioscreen_gender
false
vioscreen_genistn
0.203232898
vioscreen_glac
63.91773331
vioscreen_gltc
75.19815925
vioscreen_glucose
19.30013779
vioscreen_glutamic
6.01674002
vioscreen_glycine
1.400849225
vioscreen_glycitn
0.0
vioscreen_grams
3296.702055
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
69.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.841972623
vioscreen_inositol
0.210739763
vioscreen_iron
14.62958851
vioscreen_isoleuc
1.518876752
vioscreen_isomalt
0.0
vioscreen_joules
7302.964384000001
vioscreen_juice_servings
0.0060799999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
2.562547992
vioscreen_legumes
0.9685204909999999
vioscreen_leucine
2.507616686
vioscreen_line_gi
392.49160960000006
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19897.57671
vioscreen_lycopene
4538.3695210000005
vioscreen_lysine
2.080739813
vioscreen_m_egg
0.014273973
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
0.527369836
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
349.8549443
vioscreen_maltitol
0.0
vioscreen_maltose
3.104328981
vioscreen_mangan
5.266246054
vioscreen_mannitol
0.224684937
vioscreen_methhis3
0.35400001799999997
vioscreen_methion
0.492383481
vioscreen_mfa141
0.000465753
vioscreen_mfa161
0.987178186
vioscreen_mfa181
50.26576413
vioscreen_mfa201
0.504712374
vioscreen_mfa221
0.019616438
vioscreen_mfatot
52.07443814
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
17.10268488
vioscreen_nccglbr
115.33881640000001
vioscreen_nccglgr
80.68519906
vioscreen_niacin
10.44884953
vioscreen_niacineq
17.24145173
vioscreen_nitrogen
6.16120572
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.720411828
vioscreen_oxalic
393.57795380000005
vioscreen_oxalicm
349.41237160000003
vioscreen_pantothe
3.8723010760000003
vioscreen_pectins
7.656409862
vioscreen_pfa182
19.65657508
vioscreen_pfa183
3.7202747080000003
vioscreen_pfa184
0.0000822
vioscreen_pfa204
0.001178082
vioscreen_pfa205
0.0000822
vioscreen_pfa225
0.0
vioscreen_pfa226
0.0
vioscreen_pfatot
23.40854827
vioscreen_phenylal
1.643917721
vioscreen_phosphor
862.6965752999998
vioscreen_phytic
718.1456336
vioscreen_pinitol
0.012712328
vioscreen_potass
3640.234932
vioscreen_procdate
10/28/15
vioscreen_proline
1.6723562580000002
vioscreen_protanim
2.839424698
vioscreen_protein
38.15370024
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.31803029
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
282.0
vioscreen_retinol
25.5932042
vioscreen_rgrain
0.569863014
vioscreen_ribofla
0.964383645
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.22326
vioscreen_satoco
0.0
vioscreen_selenium
23.39846426
vioscreen_serine
1.79430149
vioscreen_sfa100
0.08934245699999999
vioscreen_sfa120
0.101589046
vioscreen_sfa140
0.47449315700000005
vioscreen_sfa160
12.16441032
vioscreen_sfa170
0.038136987000000004
vioscreen_sfa180
4.977890223999999
vioscreen_sfa200
0.36931507700000005
vioscreen_sfa220
0.216438335
vioscreen_sfa40
0.128109584
vioscreen_sfa60
0.038301369
vioscreen_sfa80
0.040712328
vioscreen_sfatot
18.69947828
vioscreen_sodium
3667.6832189999996
vioscreen_sorbitol
0.320164385
vioscreen_srvid
20179.0
vioscreen_starch
45.15756635
vioscreen_started
7/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.00446276
vioscreen_sweet_servings
1.0
vioscreen_tagatose
4.429205573
vioscreen_tfa161t
0.009342465999999999
vioscreen_tfa181t
0.188438353
vioscreen_tfa182t
0.534027392
vioscreen_tgrain
0.8805479279999999
vioscreen_thiamin
0.964986305
vioscreen_threonin
1.356328844
vioscreen_time
13.0
vioscreen_totaltfa
0.72586302
vioscreen_totcla
0.011643836000000001
vioscreen_totfolat
537.3987158
vioscreen_totsugar
92.56896404
vioscreen_tryptoph
0.408465743
vioscreen_tyrosine
0.9734795559999999
vioscreen_user_id
20179.0
vioscreen_v_drkgr
1.798136839
vioscreen_v_orange
0.537671233
vioscreen_v_other
3.449835456
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.543095879
vioscreen_v_tomato
0.29542466300000003
vioscreen_v_total
6.624137147000001
vioscreen_valine
1.8008220519999998
vioscreen_veg5_day
12.8
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
13.2
vioscreen_visit
1.0
vioscreen_vita_iu
34289.64384
vioscreen_vita_rae
1735.7419519999999
vioscreen_vita_re
3445.887671
vioscreen_vitb12
0.371972614
vioscreen_vitb6
1.439698436
vioscreen_vitc
181.9848459
vioscreen_vitd
0.06191780400000001
vioscreen_vitd2
0.0
vioscreen_vitd3
0.06191780400000001
vioscreen_vitd_iu
2.4767121619999997
vioscreen_vite_iu
25.52112586
vioscreen_vitk
805.8083904
vioscreen_water
2958.903425
vioscreen_weight
Not provided
vioscreen_wgrain
0.310684936
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.04635617
vioscreen_zinc
11.006411199999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
49.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never