10317.000029627; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3634077
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T22:47:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029627
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29627
antibiotic_history
6 months
appendix_removed
Not provided
artificial_sweeteners
Not provided
asd
Not provided
autoimmune
I do not have this condition
birth year
1958.0
bmi
28.32
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-24
collection month
July
collection season
Summer
collection time
11:15
collection_timestamp
2015-07-24 11:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
111.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
cad9cba4f274c741a4777be62e6ffb2701729462f8da994182895042462b756b701c7baf30256c0d0a79d7c2df5ef538cd2898e9f245fed6848ef4d5b2924b38
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
56.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-3.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029627
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
76409c0ead151413
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.002191781
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.68819162
vioscreen_addsugar
30.76041042
vioscreen_adsugtot
28.71175086
vioscreen_age
215.0
vioscreen_alanine
2.106054855
vioscreen_alcohol
0.010794521000000001
vioscreen_alcohol_servings
0.0021899999999999997
vioscreen_alphacar
271.6206122
vioscreen_alphtoce
11.35021939
vioscreen_alphtoco
10.61317757
vioscreen_arginine
2.8328492880000002
vioscreen_ash
19.6369863
vioscreen_aspartam
0.0
vioscreen_aspartic
5.194273732
vioscreen_avcarb
135.8597603
vioscreen_bcodeid
Not provided
vioscreen_betacar
6189.954110000001
vioscreen_betacryp
133.90769479999997
vioscreen_betaine
113.2982342
vioscreen_betatoco
0.309369858
vioscreen_biochana
0.014246575
vioscreen_bmi
Not provided
vioscreen_caffeine
573.7196062
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.73077
vioscreen_calcium_servings
4.35288
vioscreen_calories
1426.935702
vioscreen_carbo
165.7388271
vioscreen_cholest
111.6093108
vioscreen_choline
265.06459759999996
vioscreen_clac9t11
0.097643834
vioscreen_clat10c12
0.016027397
vioscreen_copper
1.2851232240000001
vioscreen_coumest
0.18397260699999998
vioscreen_cystine
0.5113424639999999
vioscreen_d_cheese
0.9335068790000001
vioscreen_d_milk
1.04693152
vioscreen_d_tot_soym
2.730767237
vioscreen_d_total
2.730767237
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.33975341
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.57498633
vioscreen_discfat_oil
26.18411012
vioscreen_discfat_sol
29.29523491
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.5867945
vioscreen_f_nj_citmlb
0.585917768
vioscreen_f_nj_other
0.960794527
vioscreen_f_nj_total
1.546712295
vioscreen_f_other
0.960794527
vioscreen_f_total
1.547561604
vioscreen_fat
67.48092359
vioscreen_fiber
29.88074165
vioscreen_fibh2o
7.779314266
vioscreen_fibinso
22.32646752
vioscreen_finished
7/19/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
462.242637
vioscreen_fol_nat
458.3796661
vioscreen_fol_syn
2.272328834
vioscreen_formontn
0.003945206
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
18.46254548
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.366958911
vioscreen_g_total
1.6351507319999998
vioscreen_g_whl
1.268219161
vioscreen_galactos
1.046684955
vioscreen_gammtoco
6.087039812
vioscreen_gender
false
vioscreen_genistn
0.251671235
vioscreen_glac
47.12205158
vioscreen_gltc
54.83468536
vioscreen_glucose
17.0766013
vioscreen_glutamic
11.60978034
vioscreen_glycine
1.74104121
vioscreen_glycitn
0.043863014000000006
vioscreen_grams
3925.465068
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
15.3
vioscreen_hei2010_fatty_acids
3.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.7
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.9
vioscreen_hei_meat_beans
7.4
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
69.8
vioscreen_hei_sodium
1.7
vioscreen_hei_sol_fat_alc_add_sug
15.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.0
vioscreen_height
Not provided
vioscreen_histidin
1.444712349
vioscreen_inositol
0.208027398
vioscreen_iron
8.587615716
vioscreen_isoleuc
2.475506675
vioscreen_isomalt
0.0
vioscreen_joules
5970.298629999999
vioscreen_juice_servings
0.00173
vioscreen_lactitol
0.0
vioscreen_lactose
25.25506742
vioscreen_legumes
0.096136987
vioscreen_leucine
4.370328219
vioscreen_line_gi
309.59565499999997
vioscreen_low_fat_dairy_serving
1.62471
vioscreen_lutzeax
9525.472603
vioscreen_lycopene
4315.323973
vioscreen_lysine
3.589150458
vioscreen_m_egg
0.065753425
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.009150685
vioscreen_magnes
383.4016267
vioscreen_maltitol
0.0
vioscreen_maltose
1.8649863880000002
vioscreen_mangan
7.120602793
vioscreen_mannitol
0.362383615
vioscreen_methhis3
0.042904109
vioscreen_methion
1.110328653
vioscreen_mfa141
0.10427397599999999
vioscreen_mfa161
0.7819453829999999
vioscreen_mfa181
25.75983786
vioscreen_mfa201
0.317041099
vioscreen_mfa221
0.011890411000000002
vioscreen_mfatot
27.16293076
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
10.61317757
vioscreen_nccglbr
89.7708155
vioscreen_nccglgr
62.787783600000004
vioscreen_niacin
13.46671126
vioscreen_niacineq
23.06087596
vioscreen_nitrogen
9.460739512
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.152849422
vioscreen_oxalic
290.7191353
vioscreen_oxalicm
325.72069780000004
vioscreen_pantothe
6.07975305
vioscreen_pectins
5.542493177000001
vioscreen_pfa182
10.16813731
vioscreen_pfa183
1.139726027
vioscreen_pfa184
0.002082192
vioscreen_pfa204
0.022739727
vioscreen_pfa205
0.00339726
vioscreen_pfa225
0.0047945209999999995
vioscreen_pfa226
0.002849315
vioscreen_pfatot
11.38632813
vioscreen_phenylal
2.650246816
vioscreen_phosphor
1319.962414
vioscreen_phytic
616.4988442000001
vioscreen_pinitol
0.004465753
vioscreen_potass
3827.6770549999997
vioscreen_procdate
10/28/15
vioscreen_proline
4.347972629
vioscreen_protanim
28.04783551
vioscreen_protein
57.98981164
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.92928885
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
281.0
vioscreen_retinol
369.29918660000004
vioscreen_rgrain
0.575534267
vioscreen_ribofla
2.3387397659999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.6850099999999997
vioscreen_satoco
0.0
vioscreen_selenium
68.34819135
vioscreen_serine
2.9672326489999996
vioscreen_sfa100
0.728712275
vioscreen_sfa120
0.839013755
vioscreen_sfa140
2.8249588639999996
vioscreen_sfa160
12.14761612
vioscreen_sfa170
0.13169864
vioscreen_sfa180
4.523342519
vioscreen_sfa200
0.24928764399999997
vioscreen_sfa220
0.370493181
vioscreen_sfa40
0.86167126
vioscreen_sfa60
0.497890399
vioscreen_sfa80
0.335945192
vioscreen_sfatot
24.08440978
vioscreen_sodium
2579.762329
vioscreen_sorbitol
0.36082195100000003
vioscreen_srvid
20181.0
vioscreen_starch
26.47079677
vioscreen_started
7/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.18879495
vioscreen_sweet_servings
0.06575
vioscreen_tagatose
5.4987124089999995
vioscreen_tfa161t
0.055178085999999994
vioscreen_tfa181t
0.945616505
vioscreen_tfa182t
0.225780853
vioscreen_tgrain
1.5495342930000002
vioscreen_thiamin
1.0080821420000001
vioscreen_threonin
1.99846576
vioscreen_time
16.0
vioscreen_totaltfa
1.303041223
vioscreen_totcla
0.11369862
vioscreen_totfolat
460.652012
vioscreen_totsugar
96.30330694
vioscreen_tryptoph
0.577369878
vioscreen_tyrosine
2.1204932640000003
vioscreen_user_id
20181.0
vioscreen_v_drkgr
0.9327945240000001
vioscreen_v_orange
0.0
vioscreen_v_other
1.828054935
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.544712349
vioscreen_v_tomato
0.845068527
vioscreen_v_total
4.150602325
vioscreen_valine
3.1398624789999996
vioscreen_veg5_day
8.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.3
vioscreen_visit
1.0
vioscreen_vita_iu
11883.317809999999
vioscreen_vita_rae
902.0272259999999
vioscreen_vita_re
1434.754024
vioscreen_vitb12
2.758027377
vioscreen_vitb6
1.632684744
vioscreen_vitc
187.9976241
vioscreen_vitd
5.122164624
vioscreen_vitd2
0.0
vioscreen_vitd3
5.122164624
vioscreen_vitd_iu
204.886585
vioscreen_vite_iu
15.79871308
vioscreen_vitk
459.6083476
vioscreen_water
3619.5705479999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.973972603
vioscreen_whole_grain_servings
1.2682200000000001
vioscreen_xylitol
0.044136987999999995
vioscreen_zinc
9.266218964
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Not provided