American Gut Project; 10317.000027271
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633183
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027271
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27271
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
19.73
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
05/06/2015
collection month
May
collection season
Spring
collection time
08:15
collection_timestamp
2015-05-06 08:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
2669.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
19b974e3644344890d3393a717d89e24d58995ecb4d7f23da4d5cb9bc1e9f8a5e5ca4176c88262015363082c341f9b1724d05ca0c404c8532623c41c1f9a3345
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.9
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-107.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Not provided
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000027271
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
74b01372ca0b57b7
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.953479171
vioscreen_addsugar
8.408137575
vioscreen_adsugtot
7.700410691
vioscreen_age
215.0
vioscreen_alanine
1.6096166319999998
vioscreen_alcohol
0.0027397259999999996
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
851.0828767
vioscreen_alphtoce
11.41257625
vioscreen_alphtoco
10.86452068
vioscreen_arginine
1.847835677
vioscreen_ash
12.98405528
vioscreen_aspartam
0.0
vioscreen_aspartic
3.4138909330000002
vioscreen_avcarb
47.64517337
vioscreen_bcodeid
Not provided
vioscreen_betacar
19749.27534
vioscreen_betacryp
589.2691352999999
vioscreen_betaine
66.05222068
vioscreen_betatoco
0.134054785
vioscreen_biochana
0.0007945210000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
0.174794518
vioscreen_calcium
true
vioscreen_calcium_avg
142.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
0.26068
vioscreen_calcium_servings
1.41307
vioscreen_calories
779.4050513999999
vioscreen_carbo
67.85498181
vioscreen_cholest
84.14536601
vioscreen_choline
147.3633562
vioscreen_clac9t11
0.05410958900000001
vioscreen_clat10c12
0.011726027
vioscreen_copper
0.7152054459999999
vioscreen_coumest
0.000027399999999999995
vioscreen_cystine
0.33684930700000004
vioscreen_d_cheese
0.23991780699999998
vioscreen_d_milk
0.020767123999999998
vioscreen_d_tot_soym
0.260684915
vioscreen_d_total
0.260684915
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.035890412000000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.633863057
vioscreen_discfat_oil
22.71205587
vioscreen_discfat_sol
12.97616385
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.003479452
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.266109582
vioscreen_f_nj_total
0.266109582
vioscreen_f_other
0.266109582
vioscreen_f_total
0.269589045
vioscreen_fat
46.12454516
vioscreen_fiber
20.19279484
vioscreen_fibh2o
4.157095462
vioscreen_fibinso
16.29904217
vioscreen_finished
4/30/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
408.8624572
vioscreen_fol_nat
406.1493151
vioscreen_fol_syn
1.5951506309999999
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.5
vioscreen_fructose
8.8944657
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
0.085369863
vioscreen_g_total
0.08967123199999999
vioscreen_g_whl
0.004328767
vioscreen_galactos
0.09693151
vioscreen_gammtoco
4.8528219980000005
vioscreen_gender
false
vioscreen_genistn
0.0640274
vioscreen_glac
14.14150524
vioscreen_gltc
16.54273866
vioscreen_glucose
8.715480522
vioscreen_glutamic
5.3972880320000005
vioscreen_glycine
1.467397361
vioscreen_glycitn
0.009726027
vioscreen_grams
2007.296918
vioscreen_hei2010_dairy
2.6
vioscreen_hei2010_empty_calories
19.9
vioscreen_hei2010_fatty_acids
9.7
vioscreen_hei2010_fruit
2.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.6
vioscreen_hei2010_sea_foods_plant_protiens
0.1
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.3
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.2
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
9.6
vioscreen_hei_milk
2.6
vioscreen_hei_non_juice_frt
4.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.6
vioscreen_hei_score
60.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.824794571
vioscreen_inositol
0.016082191000000003
vioscreen_iron
7.120547945
vioscreen_isoleuc
1.421972656
vioscreen_isomalt
0.0
vioscreen_joules
3261.023973
vioscreen_juice_servings
0.006959999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
0.493315062
vioscreen_legumes
0.0
vioscreen_leucine
2.166766775
vioscreen_line_gi
83.60024615
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
13264.99452
vioscreen_lycopene
2072.693151
vioscreen_lysine
2.22676701
vioscreen_m_egg
0.014438356999999999
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.12117808099999999
vioscreen_m_meat
0.805095934
vioscreen_m_mpf
1.8551781219999999
vioscreen_m_nutsd
0.004493151
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9289040759999999
vioscreen_m_soy
0.002520548
vioscreen_magnes
173.6875
vioscreen_maltitol
0.0
vioscreen_maltose
2.023479639
vioscreen_mangan
1.999808199
vioscreen_mannitol
0.09945205300000001
vioscreen_methhis3
7.519753317999999
vioscreen_methion
0.656739619
vioscreen_mfa141
0.054657536
vioscreen_mfa161
0.739726027
vioscreen_mfa181
17.38953607
vioscreen_mfa201
0.207424655
vioscreen_mfa221
0.010109589
vioscreen_mfatot
18.50540052
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
10.86112345
vioscreen_nccglbr
41.69945687
vioscreen_nccglgr
29.16840753
vioscreen_niacin
8.580631287000001
vioscreen_niacineq
14.42816647
vioscreen_nitrogen
5.229643353999999
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.832465854
vioscreen_oxalic
438.23266270000005
vioscreen_oxalicm
394.071661
vioscreen_pantothe
3.179561751
vioscreen_pectins
5.135945191999999
vioscreen_pfa182
9.474848833
vioscreen_pfa183
1.804438176
vioscreen_pfa184
0.000438356
vioscreen_pfa204
0.057643837999999996
vioscreen_pfa205
0.003150685
vioscreen_pfa225
0.012794521000000001
vioscreen_pfa226
0.012219178
vioscreen_pfatot
11.39164303
vioscreen_phenylal
1.3232876709999999
vioscreen_phosphor
503.13844180000007
vioscreen_phytic
158.55443069999998
vioscreen_pinitol
0.000027399999999999995
vioscreen_potass
2116.546575
vioscreen_procdate
10/28/15
vioscreen_proline
1.547780661
vioscreen_protanim
17.86416551
vioscreen_protein
32.662521399999996
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.80060467
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
452.0
vioscreen_retinol
86.4827911
vioscreen_rgrain
0.094493145
vioscreen_ribofla
0.7684931509999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.620769999999999
vioscreen_satoco
0.007452055
vioscreen_selenium
22.544384100000002
vioscreen_serine
1.3632877719999998
vioscreen_sfa100
0.245945196
vioscreen_sfa120
0.30284931800000003
vioscreen_sfa140
1.02260274
vioscreen_sfa160
6.925727071
vioscreen_sfa170
0.100547947
vioscreen_sfa180
2.637616552
vioscreen_sfa200
0.112657521
vioscreen_sfa220
0.07178082400000001
vioscreen_sfa40
0.291041105
vioscreen_sfa60
0.17232877100000002
vioscreen_sfa80
0.113397259
vioscreen_sfatot
12.12674042
vioscreen_sodium
2263.998973
vioscreen_sorbitol
0.106191755
vioscreen_srvid
18626.0
vioscreen_starch
9.271069001
vioscreen_started
4/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.378657427
vioscreen_sweet_servings
0.038360000000000005
vioscreen_tagatose
0.029972604
vioscreen_tfa161t
0.030657536000000003
vioscreen_tfa181t
0.567068523
vioscreen_tfa182t
0.186575359
vioscreen_tgrain
0.11427397
vioscreen_thiamin
0.520904165
vioscreen_threonin
1.267178052
vioscreen_time
20.0
vioscreen_totaltfa
0.792246529
vioscreen_totcla
0.06621917299999999
vioscreen_totfolat
407.7443921
vioscreen_totsugar
28.47707085
vioscreen_tryptoph
0.351506816
vioscreen_tyrosine
0.9987945140000001
vioscreen_user_id
18626.0
vioscreen_v_drkgr
2.440547745
vioscreen_v_orange
0.546794526
vioscreen_v_other
2.323780802
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.261506841
vioscreen_v_total
5.572657252999999
vioscreen_valine
1.585890511
vioscreen_veg5_day
12.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
11.1
vioscreen_visit
1.0
vioscreen_vita_iu
34402.66027
vioscreen_vita_rae
1792.270205
vioscreen_vita_re
3498.0592469999997
vioscreen_vitb12
0.992465753
vioscreen_vitb6
1.464602954
vioscreen_vitc
290.7188784
vioscreen_vitd
0.806630174
vioscreen_vitd2
0.0
vioscreen_vitd3
0.806630174
vioscreen_vitd_iu
32.26520695
vioscreen_vite_iu
16.22074192
vioscreen_vitk
685.5650684999999
vioscreen_water
1851.2948629999999
vioscreen_weight
Not provided
vioscreen_wgrain
0.019780821
vioscreen_whole_grain_servings
0.00433
vioscreen_xylitol
0.020520549
vioscreen_zinc
5.018164731000001
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never