American Gut Project; 10317.000022915
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632575
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T22:50:47Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022915
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22915
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
25.83
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/12/2015
collection month
January
collection season
Winter
collection time
09:00
collection_timestamp
2015-01-12 09:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
96.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
305bc7058f61ffe1b4d275f0583ee365297d91d74187c4d4e63b0a6df42da9c7cb16950414f3d3e955351c6e38b14f959d3cd3650a31a99a1fa8e8d9807e0b3f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
45.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022915
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
2c0605acf189e81f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.69723285
vioscreen_a_cal
225.04351459999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
15.25843723
vioscreen_addsugar
73.46750856
vioscreen_adsugtot
67.80791952
vioscreen_age
215.0
vioscreen_alanine
5.193836285
vioscreen_alcohol
24.74665561
vioscreen_alcohol_servings
1.69723
vioscreen_alphacar
523.9660103
vioscreen_alphtoce
26.77347763
vioscreen_alphtoco
20.37355522
vioscreen_arginine
6.528849395
vioscreen_ash
32.26985499
vioscreen_aspartam
0.0
vioscreen_aspartic
10.71265652
vioscreen_avcarb
329.23167810000007
vioscreen_bcodeid
Not provided
vioscreen_betacar
10185.53699
vioscreen_betacryp
320.3415454
vioscreen_betaine
231.2830265
vioscreen_betatoco
0.553150585
vioscreen_biochana
0.025780821000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
101.387896
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.4477799999999998
vioscreen_calcium_servings
5.61225
vioscreen_calories
2587.4917809999997
vioscreen_carbo
369.6478168
vioscreen_cholest
217.6886986
vioscreen_choline
527.0742295
vioscreen_clac9t11
0.02942466
vioscreen_clat10c12
0.007342465
vioscreen_copper
2.619671046
vioscreen_coumest
0.193041093
vioscreen_cystine
1.1813698959999999
vioscreen_d_cheese
0.155095903
vioscreen_d_milk
0.792876696
vioscreen_d_tot_soym
1.447780829
vioscreen_d_total
1.447780829
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
2.4428491880000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.09528725
vioscreen_discfat_oil
27.32624947
vioscreen_discfat_sol
18.6296982
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0032054790000000002
vioscreen_f_citmlb
2.460602726
vioscreen_f_nj_citmlb
1.448410745
vioscreen_f_nj_other
1.6384382690000001
vioscreen_f_nj_total
3.086876605
vioscreen_f_other
2.667835643
vioscreen_f_total
5.128465793999999
vioscreen_fat
67.20282534
vioscreen_fiber
40.24635863
vioscreen_fibh2o
10.54016615
vioscreen_fibinso
29.74940069
vioscreen_finished
1/8/15
vioscreen_fish_servings
6.659039999999999
vioscreen_fol_deqv
893.3472603
vioscreen_fol_nat
553.0162243
vioscreen_fol_syn
200.1615582
vioscreen_formontn
0.0069863009999999994
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
6.7
vioscreen_frtsumm
10.3
vioscreen_fructose
58.38479773
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.9745754290000002
vioscreen_g_total
4.013890264
vioscreen_g_whl
2.039315169
vioscreen_galactos
0.916109519
vioscreen_gammtoco
11.98268408
vioscreen_gender
false
vioscreen_genistn
3.5521374010000004
vioscreen_glac
154.1025257
vioscreen_gltc
167.85923590000002
vioscreen_glucose
50.57608091
vioscreen_glutamic
19.4476723
vioscreen_glycine
4.5176155819999995
vioscreen_glycitn
0.634219151
vioscreen_grams
5807.071233
vioscreen_hei2010_dairy
4.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.8
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.1
vioscreen_hei_sodium
1.2
vioscreen_hei_sol_fat_alc_add_sug
16.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
2.671232709
vioscreen_inositol
0.647095813
vioscreen_iron
24.47933968
vioscreen_isoleuc
4.473452215
vioscreen_isomalt
0.0
vioscreen_joules
10826.062329999999
vioscreen_juice_servings
4.0831
vioscreen_lactitol
0.0
vioscreen_lactose
17.67882197
vioscreen_legumes
0.233150702
vioscreen_leucine
7.804932977999999
vioscreen_line_gi
811.3398116000001
vioscreen_low_fat_dairy_serving
1.0963
vioscreen_lutzeax
14654.531509999999
vioscreen_lycopene
26594.65479
vioscreen_lysine
7.164738736
vioscreen_m_egg
0.329260275
vioscreen_m_fish_hi
1.743123261
vioscreen_m_fish_lo
2.051753465
vioscreen_m_frank
0.291178079
vioscreen_m_meat
0.669013705
vioscreen_m_mpf
5.683972335
vioscreen_m_nutsd
2.393726088
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9289040759999999
vioscreen_m_soy
0.6769862759999999
vioscreen_magnes
630.8945205
vioscreen_maltitol
0.0
vioscreen_maltose
3.3387130110000003
vioscreen_mangan
6.553645387
vioscreen_mannitol
0.7658355290000001
vioscreen_methhis3
19.00693092
vioscreen_methion
2.279725961
vioscreen_mfa141
0.028712333
vioscreen_mfa161
0.915040986
vioscreen_mfa181
23.00539651
vioscreen_mfa201
0.48868496
vioscreen_mfa221
0.24482194
vioscreen_mfatot
25.0729345
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.31388725
vioscreen_nccglbr
241.8945205
vioscreen_nccglgr
169.2230843
vioscreen_niacin
36.16457085
vioscreen_niacineq
55.26002783
vioscreen_nitrogen
17.42577991
vioscreen_non_fried_fish_servings
6.659039999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.156411032
vioscreen_oxalic
822.7696917999999
vioscreen_oxalicm
811.7204623
vioscreen_pantothe
11.01422036
vioscreen_pectins
7.707397126
vioscreen_pfa182
13.80553296
vioscreen_pfa183
1.296465646
vioscreen_pfa184
0.059863015
vioscreen_pfa204
0.13260275400000002
vioscreen_pfa205
0.234328785
vioscreen_pfa225
0.08709589300000001
vioscreen_pfa226
0.479561667
vioscreen_pfatot
16.24090459
vioscreen_phenylal
4.543178108999999
vioscreen_phosphor
1833.3289379999999
vioscreen_phytic
1075.932106
vioscreen_pinitol
0.04090411
vioscreen_potass
5942.319863000001
vioscreen_procdate
10/28/15
vioscreen_proline
6.1032326889999995
vioscreen_protanim
58.55270762
vioscreen_protein
107.16776540000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
48.60827269
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
645.0
vioscreen_retinol
340.9521832
vioscreen_rgrain
2.07967128
vioscreen_ribofla
2.966301236
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.84162
vioscreen_satoco
9.035946195
vioscreen_selenium
149.7074914
vioscreen_serine
4.841643033
vioscreen_sfa100
0.22605477899999998
vioscreen_sfa120
0.596986326
vioscreen_sfa140
1.218027277
vioscreen_sfa160
10.65802654
vioscreen_sfa170
0.054657536
vioscreen_sfa180
5.416246387999999
vioscreen_sfa200
0.215068493
vioscreen_sfa220
0.361013752
vioscreen_sfa40
0.232109592
vioscreen_sfa60
0.082410959
vioscreen_sfa80
0.138575347
vioscreen_sfatot
19.52684878
vioscreen_sodium
4821.515068
vioscreen_sorbitol
1.58616425
vioscreen_srvid
16809.0
vioscreen_starch
81.31975064
vioscreen_started
1/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
73.31991652
vioscreen_sweet_servings
1.3013700000000001
vioscreen_tagatose
8.056767712000001
vioscreen_tfa161t
0.019534247
vioscreen_tfa181t
0.950082105
vioscreen_tfa182t
0.475041052
vioscreen_tgrain
4.261780956
vioscreen_thiamin
2.680793825
vioscreen_threonin
3.987781598
vioscreen_time
41.0
vioscreen_totaltfa
1.5128217309999998
vioscreen_totcla
0.037698631
vioscreen_totfolat
753.167637
vioscreen_totsugar
205.9046447
vioscreen_tryptoph
1.146136976
vioscreen_tyrosine
3.569781411
vioscreen_user_id
16809.0
vioscreen_v_drkgr
0.987890374
vioscreen_v_orange
0.063178081
vioscreen_v_other
1.071890384
vioscreen_v_potato
0.665890419
vioscreen_v_starcy
0.24054793300000002
vioscreen_v_tomato
1.5244657330000002
vioscreen_v_total
4.553534019
vioscreen_valine
5.2619455
vioscreen_veg5_day
9.3
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.0
vioscreen_visit
1.0
vioscreen_vita_iu
18816.88082
vioscreen_vita_rae
1224.9257710000002
vioscreen_vita_re
2108.901541
vioscreen_vitb12
8.068764715
vioscreen_vitb6
3.9134799069999997
vioscreen_vitc
337.5359161
vioscreen_vitd
12.20695767
vioscreen_vitd2
0.0004931509999999999
vioscreen_vitd3
12.20646538
vioscreen_vitd_iu
488.2783069
vioscreen_vite_iu
33.34397207
vioscreen_vitk
576.7054366
vioscreen_water
5227.192123
vioscreen_weight
Not provided
vioscreen_wgrain
2.182109509
vioscreen_whole_grain_servings
2.03932
vioscreen_xylitol
0.061150689
vioscreen_zinc
18.46057497
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
81.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily