10317.000026556; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633884
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026556
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
33.0
age_corrected
33.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26556
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
27.31
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-30
collection month
June
collection season
Summer
collection time
19:00
collection_timestamp
2015-06-30 19:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
19.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
0c24107aa0937098d85a88c05f0fe70904701261235c7290d5d08759de3883518d5eab58cc65e66efab3290e070922c54728d2973c292233ec9cfdcdfa598869
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
34.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.4
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026556
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
c7bb620bbd738bb2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.880301363
vioscreen_a_cal
111.40509420000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.5035888669999995
vioscreen_addsugar
24.70484803
vioscreen_adsugtot
21.96416417
vioscreen_age
215.0
vioscreen_alanine
2.5664109319999997
vioscreen_alcohol
12.350109699999999
vioscreen_alcohol_servings
0.8803
vioscreen_alphacar
2594.8589039999997
vioscreen_alphtoce
13.67353382
vioscreen_alphtoco
12.04827296
vioscreen_arginine
3.132054995
vioscreen_ash
20.37969954
vioscreen_aspartam
0.0
vioscreen_aspartic
5.361177962
vioscreen_avcarb
182.07461469999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
28156.32877
vioscreen_betacryp
372.2234161
vioscreen_betaine
74.52450235
vioscreen_betatoco
0.489260321
vioscreen_biochana
0.011013698999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
145.2259739
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.09912
vioscreen_calcium_servings
2.80764
vioscreen_calories
1450.5758560000002
vioscreen_carbo
224.76857880000003
vioscreen_cholest
10.55953419
vioscreen_choline
234.0279752
vioscreen_clac9t11
0.0015616439999999998
vioscreen_clat10c12
0.000767123
vioscreen_copper
2.006848981
vioscreen_coumest
0.111068485
vioscreen_cystine
0.605972457
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.099123289
vioscreen_d_tot_soym
0.099123289
vioscreen_d_total
0.099123289
vioscreen_d_yogurt
0.0
vioscreen_daidzein
19.85747672
vioscreen_database
NDSR - V44
vioscreen_delttoco
7.838192958
vioscreen_discfat_oil
15.41682096
vioscreen_discfat_sol
5.112109375
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.012273973
vioscreen_f_citmlb
3.028219312
vioscreen_f_nj_citmlb
3.0219726560000004
vioscreen_f_nj_other
1.59599994
vioscreen_f_nj_total
4.617972429
vioscreen_f_other
1.59599994
vioscreen_f_total
4.624246508
vioscreen_fat
42.26617081
vioscreen_fiber
42.44534193
vioscreen_fibh2o
12.18674015
vioscreen_fibinso
30.32158872
vioscreen_finished
5/19/15
vioscreen_fish_servings
0.57731
vioscreen_fol_deqv
598.547774
vioscreen_fol_nat
539.6099315
vioscreen_fol_syn
34.62041149
vioscreen_formontn
0.005013699
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.0
vioscreen_frtsumm
9.2
vioscreen_fructose
33.87169574
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
1.2539177879999999
vioscreen_g_total
2.126054821
vioscreen_g_whl
0.872109609
vioscreen_galactos
0.204602741
vioscreen_gammtoco
12.92490636
vioscreen_gender
false
vioscreen_genistn
31.68380779
vioscreen_glac
85.17948416
vioscreen_gltc
95.92009846
vioscreen_glucose
32.84810574
vioscreen_glutamic
8.851039437
vioscreen_glycine
2.133507465
vioscreen_glycitn
3.387698657
vioscreen_grams
4315.6839039999995
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.4
vioscreen_hei_meat_beans
8.0
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.9
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
75.2
vioscreen_hei_sodium
3.4
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
1.182767183
vioscreen_inositol
0.281205478
vioscreen_iron
14.29712249
vioscreen_isoleuc
2.034437875
vioscreen_isomalt
0.0
vioscreen_joules
6069.205479
vioscreen_juice_servings
0.01255
vioscreen_lactitol
0.0
vioscreen_lactose
0.39482191899999997
vioscreen_legumes
0.192301377
vioscreen_leucine
3.293808527
vioscreen_line_gi
472.7485017
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
31210.3589
vioscreen_lycopene
1395.678682
vioscreen_lysine
2.477506789
vioscreen_m_egg
0.0020273970000000002
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.328958903
vioscreen_m_nutsd
0.409315094
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
1.406219232
vioscreen_magnes
451.29619010000005
vioscreen_maltitol
0.0
vioscreen_maltose
2.011863228
vioscreen_mangan
5.96882157
vioscreen_mannitol
0.20594520000000002
vioscreen_methhis3
1.188520541
vioscreen_methion
0.637013684
vioscreen_mfa141
0.000136986
vioscreen_mfa161
0.5750958589999999
vioscreen_mfa181
18.27465887
vioscreen_mfa201
0.20780819399999997
vioscreen_mfa221
0.10463013300000001
vioscreen_mfatot
19.44531518
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
11.99668504
vioscreen_nccglbr
130.7711794
vioscreen_nccglgr
91.47873502
vioscreen_niacin
16.152005300000003
vioscreen_niacineq
25.55380993
vioscreen_nitrogen
8.378273491
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4984654259999999
vioscreen_oxalic
708.9578767
vioscreen_oxalicm
751.2150684999999
vioscreen_pantothe
4.984411119
vioscreen_pectins
9.747341877
vioscreen_pfa182
8.788603649
vioscreen_pfa183
1.337150511
vioscreen_pfa184
0.014328767
vioscreen_pfa204
0.009972601999999999
vioscreen_pfa205
0.043150685
vioscreen_pfa225
0.016356164
vioscreen_pfa226
0.087561641
vioscreen_pfatot
10.36216489
vioscreen_phenylal
2.209205439
vioscreen_phosphor
918.0081336000001
vioscreen_phytic
1165.466353
vioscreen_pinitol
0.156821922
vioscreen_potass
4213.931507
vioscreen_procdate
10/28/15
vioscreen_proline
2.596219332
vioscreen_protanim
2.907424551
vioscreen_protein
50.16685039
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
47.26016695
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
438.0
vioscreen_retinol
15.86457486
vioscreen_rgrain
1.728958924
vioscreen_ribofla
1.624438309
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.0672099999999998
vioscreen_satoco
0.113178086
vioscreen_selenium
36.47830426
vioscreen_serine
2.3832601469999997
vioscreen_sfa100
0.015123289
vioscreen_sfa120
0.029369861
vioscreen_sfa140
0.139150687
vioscreen_sfa160
5.588876886
vioscreen_sfa170
0.03364384
vioscreen_sfa180
1.731534273
vioscreen_sfa200
0.08717808699999999
vioscreen_sfa220
0.17252054100000003
vioscreen_sfa40
0.018356163999999998
vioscreen_sfa60
0.005452055
vioscreen_sfa80
0.006575342
vioscreen_sfatot
7.870466342
vioscreen_sodium
2342.276884
vioscreen_sorbitol
0.689150708
vioscreen_srvid
18721.0
vioscreen_starch
55.8929634
vioscreen_started
5/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
33.49934182
vioscreen_sweet_servings
0.14247
vioscreen_tagatose
0.631013719
vioscreen_tfa161t
0.003150685
vioscreen_tfa181t
0.36578080700000004
vioscreen_tfa182t
0.10695890699999999
vioscreen_tgrain
2.8802466819999997
vioscreen_thiamin
1.161424527
vioscreen_threonin
1.888739432
vioscreen_time
12.0
vioscreen_totaltfa
0.47471234
vioscreen_totcla
0.002438356
vioscreen_totfolat
574.2293236
vioscreen_totsugar
104.9719071
vioscreen_tryptoph
0.56605488
vioscreen_tyrosine
1.553260448
vioscreen_user_id
18721.0
vioscreen_v_drkgr
2.379616264
vioscreen_v_orange
0.557424676
vioscreen_v_other
1.189287745
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.115835613
vioscreen_v_total
4.242163755
vioscreen_valine
2.334712784
vioscreen_veg5_day
10.1
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
8.5
vioscreen_visit
1.0
vioscreen_vita_iu
49453.93425
vioscreen_vita_rae
2485.854966
vioscreen_vita_re
4955.844178
vioscreen_vitb12
0.569041088
vioscreen_vitb6
2.413671541
vioscreen_vitc
415.2938356
vioscreen_vitd
1.4295890080000002
vioscreen_vitd2
0.0
vioscreen_vitd3
1.4295890080000002
vioscreen_vitd_iu
57.18356031
vioscreen_vite_iu
17.97756047
vioscreen_vitk
1456.7761990000001
vioscreen_water
3972.0760270000005
vioscreen_weight
Not provided
vioscreen_wgrain
1.151315015
vioscreen_whole_grain_servings
0.87211
vioscreen_xylitol
0.07035617
vioscreen_zinc
6.926903628
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
93.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Occasionally (1-2 times/week)