American Gut Project; 10317.000020034
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632416
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020034
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
21.0
age_corrected
21.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20034
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Self-diagnosed
birth year
1993.0
bmi
23.54
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/02/2015
collection month
January
collection season
Winter
collection time
08:50
collection_timestamp
2015-01-02 08:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
115.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f6afe41fd119c03414bccc920d9f39c87ea18dd2d856b4806f0c5a87c4e2c84cff747b0296f1adaf3579aa93b594a863c8760af5ab8ff2a4df3647cff6cc2bfa
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
38.4
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020034
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
86bfca0a9ce93731
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.570821893
vioscreen_a_cal
65.14945420000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.511643836
vioscreen_addsugar
40.05871147
vioscreen_adsugtot
32.72021886
vioscreen_age
215.0
vioscreen_alanine
4.6883009819999995
vioscreen_alcohol
8.349286976
vioscreen_alcohol_servings
0.57082
vioscreen_alphacar
316.0790882
vioscreen_alphtoce
9.508545591
vioscreen_alphtoco
8.457314854
vioscreen_arginine
5.100384605
vioscreen_ash
22.40997298
vioscreen_aspartam
0.0
vioscreen_aspartic
8.873287671
vioscreen_avcarb
174.2179259
vioscreen_bcodeid
Not provided
vioscreen_betacar
4142.9325340000005
vioscreen_betacryp
134.66132280000002
vioscreen_betaine
141.18308009999998
vioscreen_betatoco
0.210575365
vioscreen_biochana
0.01419178
vioscreen_bmi
Not provided
vioscreen_caffeine
207.67326630000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.39701
vioscreen_calcium_servings
3.9956699999999996
vioscreen_calories
2107.059589
vioscreen_carbo
190.85941780000002
vioscreen_cholest
563.3610445
vioscreen_choline
554.2517123
vioscreen_clac9t11
0.19923290100000002
vioscreen_clat10c12
0.036164386
vioscreen_copper
1.272219305
vioscreen_coumest
0.096767122
vioscreen_cystine
1.187287631
vioscreen_d_cheese
0.9569589279999999
vioscreen_d_milk
1.035205496
vioscreen_d_tot_soym
2.397013792
vioscreen_d_total
2.397013792
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.440027315
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.34030143
vioscreen_discfat_oil
21.41361837
vioscreen_discfat_sol
62.07767016
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.44186305200000003
vioscreen_f_nj_citmlb
0.325205492
vioscreen_f_nj_other
0.466630115
vioscreen_f_nj_total
0.791890434
vioscreen_f_other
0.466630115
vioscreen_f_total
0.9085479320000001
vioscreen_fat
102.7598245
vioscreen_fiber
16.64235606
vioscreen_fibh2o
5.095260662
vioscreen_fibinso
11.58885247
vioscreen_finished
1/1/15
vioscreen_fish_servings
4.74731
vioscreen_fol_deqv
458.10402400000004
vioscreen_fol_nat
274.8928296
vioscreen_fol_syn
107.7577376
vioscreen_formontn
0.002767124
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
0.9
vioscreen_frtsumm
1.8
vioscreen_fructose
13.32392043
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
2.6842191509999997
vioscreen_g_total
3.382082085
vioscreen_g_whl
0.697972588
vioscreen_galactos
0.840520571
vioscreen_gammtoco
9.440493231
vioscreen_gender
false
vioscreen_genistn
0.516520545
vioscreen_glac
85.42984268
vioscreen_gltc
91.34148116
vioscreen_glucose
16.84260087
vioscreen_glutamic
17.97632973
vioscreen_glycine
3.901698951
vioscreen_glycitn
0.081835614
vioscreen_grams
3058.4017120000003
vioscreen_hei2010_dairy
8.8
vioscreen_hei2010_empty_calories
11.3
vioscreen_hei2010_fatty_acids
0.8
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.5
vioscreen_hei2010_veg
4.8
vioscreen_hei2010_whole_fruit
4.7
vioscreen_hei2010_whole_grains
2.2
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.8
vioscreen_hei_non_juice_frt
4.7
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
56.5
vioscreen_hei_sodium
0.4
vioscreen_hei_sol_fat_alc_add_sug
9.6
vioscreen_hei_veg
4.8
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
2.683726188
vioscreen_inositol
0.10641097
vioscreen_iron
10.33805651
vioscreen_isoleuc
4.581315216
vioscreen_isomalt
0.0
vioscreen_joules
8815.939726
vioscreen_juice_servings
0.23334000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
19.93706924
vioscreen_legumes
0.013178081999999999
vioscreen_leucine
7.786083315
vioscreen_line_gi
325.584161
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
4642.805136999999
vioscreen_lycopene
6375.30274
vioscreen_lysine
7.201397287000001
vioscreen_m_egg
1.653534354
vioscreen_m_fish_hi
1.374383629
vioscreen_m_fish_lo
1.330986378
vioscreen_m_frank
0.158301367
vioscreen_m_meat
1.4220273369999998
vioscreen_m_mpf
5.372301744
vioscreen_m_nutsd
0.31561643
vioscreen_m_organ
0.0
vioscreen_m_poult
1.086630124
vioscreen_m_soy
0.009561645
vioscreen_magnes
327.2504923
vioscreen_maltitol
0.0
vioscreen_maltose
3.244301156
vioscreen_mangan
3.234575664
vioscreen_mannitol
0.23506846
vioscreen_methhis3
19.78142391
vioscreen_methion
2.41589021
vioscreen_mfa141
0.14443836
vioscreen_mfa161
1.909862947
vioscreen_mfa181
35.05219392
vioscreen_mfa201
0.46712328799999997
vioscreen_mfa221
0.19208221399999997
vioscreen_mfatot
38.07545751
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.457314854
vioscreen_nccglbr
138.7035852
vioscreen_nccglgr
97.01333476
vioscreen_niacin
21.36172811
vioscreen_niacineq
39.18629869
vioscreen_nitrogen
15.57399936
vioscreen_non_fried_fish_servings
4.74731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.11230151
vioscreen_oxalic
144.4202804
vioscreen_oxalicm
138.6438998
vioscreen_pantothe
6.629917594
vioscreen_pectins
3.3972606080000003
vioscreen_pfa182
11.94112398
vioscreen_pfa183
1.42950707
vioscreen_pfa184
0.046684934000000004
vioscreen_pfa204
0.242547963
vioscreen_pfa205
0.17208219600000002
vioscreen_pfa225
0.074876712
vioscreen_pfa226
0.390438341
vioscreen_pfatot
14.45616572
vioscreen_phenylal
4.335589014
vioscreen_phosphor
1580.253082
vioscreen_phytic
469.32191780000005
vioscreen_pinitol
0.023616437999999997
vioscreen_potass
3292.742808
vioscreen_procdate
10/28/15
vioscreen_proline
6.203122992999999
vioscreen_protanim
75.88249679
vioscreen_protein
96.86491866
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.97654645
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
661.0
vioscreen_retinol
640.1153253
vioscreen_rgrain
2.98323289
vioscreen_ribofla
2.257643943
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.30318
vioscreen_satoco
0.0
vioscreen_selenium
150.8345034
vioscreen_serine
4.770246615
vioscreen_sfa100
1.117178052
vioscreen_sfa120
1.406986101
vioscreen_sfa140
4.4917263080000005
vioscreen_sfa160
21.13246736
vioscreen_sfa170
0.243780831
vioscreen_sfa180
8.487123421
vioscreen_sfa200
0.155917818
vioscreen_sfa220
0.111123291
vioscreen_sfa40
1.301424711
vioscreen_sfa60
0.827479449
vioscreen_sfa80
0.609287711
vioscreen_sfatot
40.42181614
vioscreen_sodium
4122.173629999999
vioscreen_sorbitol
0.041972605
vioscreen_srvid
16707.0
vioscreen_starch
71.43391481
vioscreen_started
1/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.77150578
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
3.584110124
vioscreen_tfa161t
0.097424661
vioscreen_tfa181t
2.415041236
vioscreen_tfa182t
0.408246602
vioscreen_tgrain
3.491342707
vioscreen_thiamin
1.347315289
vioscreen_threonin
3.900766869
vioscreen_time
16.0
vioscreen_totaltfa
3.035589683
vioscreen_totcla
0.235972595
vioscreen_totfolat
382.6506849
vioscreen_totsugar
80.49797196
vioscreen_tryptoph
1.071506699
vioscreen_tyrosine
3.499561216
vioscreen_user_id
16707.0
vioscreen_v_drkgr
0.41942460600000003
vioscreen_v_orange
0.106410949
vioscreen_v_other
0.6896712209999999
vioscreen_v_potato
0.622547934
vioscreen_v_starcy
0.038821918
vioscreen_v_tomato
0.33202740399999997
vioscreen_v_total
2.20890411
vioscreen_valine
5.282548962
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
4.4
vioscreen_visit
1.0
vioscreen_vita_iu
9413.984932
vioscreen_vita_rae
1004.1422949999999
vioscreen_vita_re
1368.166952
vioscreen_vitb12
6.691726642999999
vioscreen_vitb6
2.007424718
vioscreen_vitc
98.47041952
vioscreen_vitd
14.50964523
vioscreen_vitd2
0.00090411
vioscreen_vitd3
14.50871415
vioscreen_vitd_iu
580.3858091
vioscreen_vite_iu
12.59690176
vioscreen_vitk
252.59514130000002
vioscreen_water
2652.570548
vioscreen_weight
Not provided
vioscreen_wgrain
0.5081096070000001
vioscreen_whole_grain_servings
0.69797
vioscreen_xylitol
0.019178086
vioscreen_zinc
10.68528668
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)