American Gut Project; 10317.000028730
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633979
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:12Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028730
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
27.0
age_corrected
27.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28730
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1988.0
bmi
21.52
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-20
collection month
July
collection season
Summer
collection time
16:00
collection_timestamp
2015-07-20 16:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
1530.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
beba7c5db84d546563f9843057a7c47b0037a90b679f6f729ca05aa2514c77982fecee250cd2eb28cc8b90acf21a887058a1aa0d077f0c019dafb3c1916ce417
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
42.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-122.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
Three
roommates_in_study
Not sure
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028730
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
82c5333fd415f906
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.908520508
vioscreen_a_cal
113.41770120000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.6250137119999999
vioscreen_addsugar
12.43838292
vioscreen_adsugtot
8.790849074
vioscreen_age
215.0
vioscreen_alanine
5.577342412
vioscreen_alcohol
14.20427413
vioscreen_alcohol_servings
0.9085200000000001
vioscreen_alphacar
519.1060788
vioscreen_alphtoce
15.63487265
vioscreen_alphtoco
13.80873689
vioscreen_arginine
6.168410879
vioscreen_ash
20.73476563
vioscreen_aspartam
0.0
vioscreen_aspartic
9.847451572999999
vioscreen_avcarb
94.98868793
vioscreen_bcodeid
Not provided
vioscreen_betacar
9812.933562
vioscreen_betacryp
74.71657748
vioscreen_betaine
52.11753532
vioscreen_betatoco
0.319150637
vioscreen_biochana
0.005863014000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
48.63364726
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.07611
vioscreen_calcium_servings
1.89104
vioscreen_calories
1832.0448629999999
vioscreen_carbo
122.4330051
vioscreen_cholest
232.7121361
vioscreen_choline
384.2238442
vioscreen_clac9t11
0.065863011
vioscreen_clat10c12
0.019780823
vioscreen_copper
1.4909315140000001
vioscreen_coumest
0.22367123100000003
vioscreen_cystine
1.17073983
vioscreen_d_cheese
0.00539726
vioscreen_d_milk
0.070520542
vioscreen_d_tot_soym
0.07610958599999999
vioscreen_d_total
0.07610958599999999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
2.467835476
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.438739766
vioscreen_discfat_oil
51.77473245
vioscreen_discfat_sol
16.24309718
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007123289999999999
vioscreen_f_citmlb
0.022465752999999998
vioscreen_f_nj_citmlb
0.0030136990000000003
vioscreen_f_nj_other
1.7424931769999998
vioscreen_f_nj_total
1.745506809
vioscreen_f_other
1.7424931769999998
vioscreen_f_total
1.764958964
vioscreen_fat
98.36610659
vioscreen_fiber
27.30158658
vioscreen_fibh2o
6.906794467
vioscreen_fibinso
20.40323202
vioscreen_finished
7/20/15
vioscreen_fish_servings
5.97596
vioscreen_fol_deqv
383.0020976
vioscreen_fol_nat
364.6054795
vioscreen_fol_syn
10.81810988
vioscreen_formontn
0.000520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
3.5
vioscreen_fructose
15.06359295
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.418493151
vioscreen_g_total
1.2269589779999999
vioscreen_g_whl
0.808465743
vioscreen_galactos
0.151643831
vioscreen_gammtoco
16.17791631
vioscreen_gender
false
vioscreen_genistn
4.176959145
vioscreen_glac
41.05923052
vioscreen_gltc
47.06813998
vioscreen_glucose
12.15364405
vioscreen_glutamic
15.40978168
vioscreen_glycine
4.9898357230000006
vioscreen_glycitn
0.5426301720000001
vioscreen_grams
4934.833904
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
72.8
vioscreen_hei_sodium
1.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.5
vioscreen_height
Not provided
vioscreen_histidin
2.88600004
vioscreen_inositol
0.099917812
vioscreen_iron
12.27246495
vioscreen_isoleuc
4.642575449
vioscreen_isomalt
0.0
vioscreen_joules
7665.273287999999
vioscreen_juice_servings
0.0389
vioscreen_lactitol
0.0
vioscreen_lactose
0.34512327
vioscreen_legumes
0.37490409999999996
vioscreen_leucine
7.5180269420000005
vioscreen_line_gi
171.5810146
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15671.442469999998
vioscreen_lycopene
2199.954452
vioscreen_lysine
7.99778133
vioscreen_m_egg
0.092575345
vioscreen_m_fish_hi
1.322191881
vioscreen_m_fish_lo
2.083506796
vioscreen_m_frank
0.304191777
vioscreen_m_meat
2.362712369
vioscreen_m_mpf
10.0569871
vioscreen_m_nutsd
0.039041096000000004
vioscreen_m_organ
0.0
vioscreen_m_poult
3.984603088
vioscreen_m_soy
0.25339725399999996
vioscreen_magnes
360.22320210000004
vioscreen_maltitol
0.0
vioscreen_maltose
0.9186301040000001
vioscreen_mangan
3.524329115
vioscreen_mannitol
0.734575245
vioscreen_methhis3
34.77460135
vioscreen_methion
2.4866028669999998
vioscreen_mfa141
0.08638356400000001
vioscreen_mfa161
2.186273779
vioscreen_mfa181
44.1023598
vioscreen_mfa201
0.42736992
vioscreen_mfa221
0.153424647
vioscreen_mfatot
47.13814747
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
13.77922999
vioscreen_nccglbr
69.37702269
vioscreen_nccglgr
48.52611301
vioscreen_niacin
27.17755779
vioscreen_niacineq
45.38890732
vioscreen_nitrogen
15.914767499999998
vioscreen_non_fried_fish_servings
5.97596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.0368491810000005
vioscreen_oxalic
422.34482019999996
vioscreen_oxalicm
364.3356164
vioscreen_pantothe
5.230766401
vioscreen_pectins
5.527150778999999
vioscreen_pfa182
20.11457486
vioscreen_pfa183
2.404301223
vioscreen_pfa184
0.034739727000000005
vioscreen_pfa204
0.23323286899999998
vioscreen_pfa205
0.148219174
vioscreen_pfa225
0.07964384
vioscreen_pfa226
0.371397295
vioscreen_pfatot
23.55029698
vioscreen_phenylal
4.03323289
vioscreen_phosphor
1125.6902400000001
vioscreen_phytic
627.4336901
vioscreen_pinitol
0.0017260270000000002
vioscreen_potass
3404.523973
vioscreen_procdate
10/28/15
vioscreen_proline
4.22915106
vioscreen_protanim
77.95438249
vioscreen_protein
98.99138485
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.03772474
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
273.0
vioscreen_retinol
74.19713185
vioscreen_rgrain
0.66561643
vioscreen_ribofla
1.119643956
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.25501
vioscreen_satoco
0.064684933
vioscreen_selenium
136.24187709999998
vioscreen_serine
4.063424056000001
vioscreen_sfa100
0.034246575
vioscreen_sfa120
0.065698634
vioscreen_sfa140
0.605726059
vioscreen_sfa160
14.38761772
vioscreen_sfa170
0.057205482
vioscreen_sfa180
4.422109776
vioscreen_sfa200
0.204082207
vioscreen_sfa220
0.12452056
vioscreen_sfa40
0.007671233
vioscreen_sfa60
0.0037260270000000002
vioscreen_sfa80
0.001753425
vioscreen_sfatot
20.08481914
vioscreen_sodium
3297.710959
vioscreen_sorbitol
0.9473972270000001
vioscreen_srvid
20195.0
vioscreen_starch
44.05862853
vioscreen_started
7/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
6.660109428999999
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.001534247
vioscreen_tfa161t
0.047561646
vioscreen_tfa181t
0.7993972570000001
vioscreen_tfa182t
0.207643859
vioscreen_tgrain
1.620712322
vioscreen_thiamin
0.926849114
vioscreen_threonin
4.1059453260000005
vioscreen_time
14.0
vioscreen_totaltfa
1.0827396759999999
vioscreen_totcla
0.085205486
vioscreen_totfolat
375.4229452
vioscreen_totsugar
35.68200182
vioscreen_tryptoph
1.09367124
vioscreen_tyrosine
3.274465901
vioscreen_user_id
20195.0
vioscreen_v_drkgr
1.3467397190000001
vioscreen_v_orange
0.082493152
vioscreen_v_other
1.4188767519999999
vioscreen_v_potato
0.373780802
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.361452035
vioscreen_v_total
3.583342252
vioscreen_valine
4.972712436
vioscreen_veg5_day
8.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.2
vioscreen_visit
1.0
vioscreen_vita_iu
17095.15753
vioscreen_vita_rae
916.6858732999999
vioscreen_vita_re
1759.171918
vioscreen_vitb12
4.396219165
vioscreen_vitb6
2.561917909
vioscreen_vitc
122.39081759999999
vioscreen_vitd
8.693369407999999
vioscreen_vitd2
0.002383562
vioscreen_vitd3
8.691012949
vioscreen_vitd_iu
347.7347763
vioscreen_vite_iu
20.6195861
vioscreen_vitk
782.4376712000001
vioscreen_water
4591.34589
vioscreen_weight
Not provided
vioscreen_wgrain
0.95509585
vioscreen_whole_grain_servings
0.80847
vioscreen_xylitol
0.041068493
vioscreen_zinc
10.59931574
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)