American Gut Project; 10317.000027875
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633549
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027875
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27875
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1960.0
bmi
23.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-17
collection month
May
collection season
Spring
collection time
10:20
collection_timestamp
2015-05-17 10:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southwest
elevation
286.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
63724c7aa24777cf3d4018acf0d93ff17692788a4bc77ada1741fa49da6421bc6006531bbfe53c0d4832ad15fc11ed42edd0c447fd673804e9f4eeceda88c97e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
30.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-97.9
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027875
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
ad3bbd068d390579
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.231287666
vioscreen_a_cal
26.95046554
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.079671447
vioscreen_addsugar
21.54139555
vioscreen_adsugtot
19.85550621
vioscreen_age
215.0
vioscreen_alanine
3.61895869
vioscreen_alcohol
3.487205693
vioscreen_alcohol_servings
0.23129
vioscreen_alphacar
1905.331336
vioscreen_alphtoce
17.33188811
vioscreen_alphtoco
16.22243552
vioscreen_arginine
4.013862505
vioscreen_ash
22.3872873
vioscreen_aspartam
0.0
vioscreen_aspartic
6.438766187000001
vioscreen_avcarb
84.98328339
vioscreen_bcodeid
Not provided
vioscreen_betacar
17618.0726
vioscreen_betacryp
183.82198200000002
vioscreen_betaine
90.67494649
vioscreen_betatoco
0.183561623
vioscreen_biochana
0.007534246999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
215.37163959999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.49988999999999995
vioscreen_calcium_servings
2.0927700000000002
vioscreen_calories
1867.140925
vioscreen_carbo
105.46210400000001
vioscreen_cholest
435.71767980000004
vioscreen_choline
421.93869860000007
vioscreen_clac9t11
0.219945202
vioscreen_clat10c12
0.04679453099999999
vioscreen_copper
1.3129315940000001
vioscreen_coumest
0.0007123289999999999
vioscreen_cystine
0.8413971370000001
vioscreen_d_cheese
0.35430139
vioscreen_d_milk
0.120931505
vioscreen_d_tot_soym
0.49989038799999996
vioscreen_d_total
0.49989038799999996
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.18454792600000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.929479479
vioscreen_discfat_oil
60.08989191
vioscreen_discfat_sol
58.58869328
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000767123
vioscreen_f_citmlb
0.839287745
vioscreen_f_nj_citmlb
0.832274053
vioscreen_f_nj_other
0.449287644
vioscreen_f_nj_total
1.2815616140000001
vioscreen_f_other
0.449287644
vioscreen_f_total
1.288575306
vioscreen_fat
134.4598566
vioscreen_fiber
20.40857368
vioscreen_fibh2o
4.212164223
vioscreen_fibinso
16.21227526
vioscreen_finished
5/17/15
vioscreen_fish_servings
2.1492299999999998
vioscreen_fol_deqv
422.47397259999997
vioscreen_fol_nat
409.4030394
vioscreen_fol_syn
7.690438382999999
vioscreen_formontn
0.00109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
16.49879334
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.8495342929999999
vioscreen_g_total
0.861863061
vioscreen_g_whl
0.012328767
vioscreen_galactos
0.162602746
vioscreen_gammtoco
9.991644371
vioscreen_gender
false
vioscreen_genistn
0.30613698
vioscreen_glac
29.96528789
vioscreen_gltc
34.35449486
vioscreen_glucose
17.1816433
vioscreen_glutamic
10.566027
vioscreen_glycine
3.1840820310000004
vioscreen_glycitn
0.047561646
vioscreen_grams
2592.355137
vioscreen_hei2010_dairy
2.1
vioscreen_hei2010_empty_calories
11.7
vioscreen_hei2010_fatty_acids
5.3
vioscreen_hei2010_fruit
4.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.8
vioscreen_hei2010_sea_foods_plant_protiens
4.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.3
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
53.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.857726215
vioscreen_inositol
0.15756165
vioscreen_iron
11.010989
vioscreen_isoleuc
3.0650688280000002
vioscreen_isomalt
0.0
vioscreen_joules
7812.116437999999
vioscreen_juice_servings
0.01405
vioscreen_lactitol
0.0
vioscreen_lactose
2.0560000069999997
vioscreen_legumes
0.018356163999999998
vioscreen_leucine
5.051534073
vioscreen_line_gi
190.81583899999998
vioscreen_low_fat_dairy_serving
0.03501
vioscreen_lutzeax
20912.3726
vioscreen_lycopene
5876.742466
vioscreen_lysine
5.028329342
vioscreen_m_egg
1.034273999
vioscreen_m_fish_hi
0.99539728
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.138520552
vioscreen_m_meat
2.114630043
vioscreen_m_mpf
4.8516711930000005
vioscreen_m_nutsd
0.076219177
vioscreen_m_organ
0.135369863
vioscreen_m_poult
1.238411012
vioscreen_m_soy
0.012219178
vioscreen_magnes
280.1278039
vioscreen_maltitol
0.0
vioscreen_maltose
0.932876712
vioscreen_mangan
4.977917982
vioscreen_mannitol
0.286109569
vioscreen_methhis3
19.07975439
vioscreen_methion
1.5938081919999998
vioscreen_mfa141
0.10553424800000001
vioscreen_mfa161
2.161534641
vioscreen_mfa181
54.46824165
vioscreen_mfa201
0.630164369
vioscreen_mfa221
0.197863017
vioscreen_mfatot
57.86371468
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.20769478
vioscreen_nccglbr
63.48441246
vioscreen_nccglgr
44.41175621
vioscreen_niacin
14.384658600000002
vioscreen_niacineq
26.13857288
vioscreen_nitrogen
10.6228228
vioscreen_non_fried_fish_servings
2.1492299999999998
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.46706844
vioscreen_oxalic
731.7949486
vioscreen_oxalicm
745.8307363
vioscreen_pantothe
4.2009039889999995
vioscreen_pectins
4.7858906789999995
vioscreen_pfa182
19.86153682
vioscreen_pfa183
2.932411173
vioscreen_pfa184
0.04109589
vioscreen_pfa204
0.199068503
vioscreen_pfa205
0.134931517
vioscreen_pfa225
0.06413698599999999
vioscreen_pfa226
0.29515067300000003
vioscreen_pfatot
23.65370024
vioscreen_phenylal
2.7971233210000004
vioscreen_phosphor
929.2743151000001
vioscreen_phytic
276.59965750000003
vioscreen_pinitol
0.0004931509999999999
vioscreen_potass
3029.45411
vioscreen_procdate
10/28/15
vioscreen_proline
3.2718077780000003
vioscreen_protanim
51.43052226
vioscreen_protein
66.20731485
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.77931293
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
442.0
vioscreen_retinol
668.1956336000001
vioscreen_rgrain
0.38279448200000005
vioscreen_ribofla
1.49030143
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8649299999999998
vioscreen_satoco
0.032328768
vioscreen_selenium
73.05654966
vioscreen_serine
2.970465673
vioscreen_sfa100
1.030082138
vioscreen_sfa120
1.075013712
vioscreen_sfa140
3.8116167460000003
vioscreen_sfa160
23.71005191
vioscreen_sfa170
0.312273961
vioscreen_sfa180
9.92813704
vioscreen_sfa200
0.31860272100000003
vioscreen_sfa220
0.150164377
vioscreen_sfa40
1.286931621
vioscreen_sfa60
0.7683287740000001
vioscreen_sfa80
0.47323290700000004
vioscreen_sfatot
43.17695848
vioscreen_sodium
5588.516096
vioscreen_sorbitol
0.45873964899999997
vioscreen_srvid
18717.0
vioscreen_starch
16.81005458
vioscreen_started
5/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.4239726
vioscreen_sweet_servings
0.26093
vioscreen_tagatose
1.3569862680000002
vioscreen_tfa161t
0.05884931400000001
vioscreen_tfa181t
2.0753150419999997
vioscreen_tfa182t
0.466712345
vioscreen_tgrain
0.97263008
vioscreen_thiamin
0.74506861
vioscreen_threonin
2.7529586160000004
vioscreen_time
26.0
vioscreen_totaltfa
2.605561222
vioscreen_totcla
0.267205539
vioscreen_totfolat
417.09315069999997
vioscreen_totsugar
53.92440604
vioscreen_tryptoph
0.705917735
vioscreen_tyrosine
2.295917668
vioscreen_user_id
18717.0
vioscreen_v_drkgr
1.6283286730000002
vioscreen_v_orange
0.432958901
vioscreen_v_other
1.927561972
vioscreen_v_potato
0.015287671000000001
vioscreen_v_starcy
0.00649315
vioscreen_v_tomato
0.260027386
vioscreen_v_total
4.2708766989999996
vioscreen_valine
3.3876719019999997
vioscreen_veg5_day
8.6
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
8.5
vioscreen_visit
1.0
vioscreen_vita_iu
33331.002739999996
vioscreen_vita_rae
2223.418836
vioscreen_vita_re
3778.638014
vioscreen_vitb12
5.607972362000001
vioscreen_vitb6
1.8246023519999999
vioscreen_vitc
207.6625642
vioscreen_vitd
7.471588051
vioscreen_vitd2
0.0
vioscreen_vitd3
7.471588051
vioscreen_vitd_iu
298.86352200000005
vioscreen_vite_iu
24.220465
vioscreen_vitk
931.2927225999999
vioscreen_water
2274.554623
vioscreen_weight
Not provided
vioscreen_wgrain
0.589835598
vioscreen_whole_grain_servings
0.012329999999999999
vioscreen_xylitol
0.055643845
vioscreen_zinc
8.641615609
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never