American Gut Project; 10317.000027213
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633179
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027213
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27213
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
23.3
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
05/01/2015
collection month
May
collection season
Spring
collection time
16:00
collection_timestamp
2015-05-01 16:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
30.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7e0fda632dc86f87f9e9627b917405b05b73ad0c3cbb8dbec9b45fdab10e7fd58b86689b721fcda8b31cae772f503c86f1c586d13efc03bfe0575aaa518548c2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
61.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-150.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027213
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AK
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f53ad318a14461a7
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.851945182
vioscreen_a_cal
105.8182149
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.993917805
vioscreen_addsugar
5.765534033
vioscreen_adsugtot
4.192438329
vioscreen_age
215.0
vioscreen_alanine
5.467122953
vioscreen_alcohol
13.24438276
vioscreen_alcohol_servings
0.85195
vioscreen_alphacar
1848.488014
vioscreen_alphtoce
10.21895869
vioscreen_alphtoco
9.012301342999999
vioscreen_arginine
6.00613696
vioscreen_ash
20.52334118
vioscreen_aspartam
0.0
vioscreen_aspartic
9.78219245
vioscreen_avcarb
102.7085616
vioscreen_bcodeid
Not provided
vioscreen_betacar
6372.558219
vioscreen_betacryp
142.565122
vioscreen_betaine
61.39010595
vioscreen_betatoco
0.14558901900000001
vioscreen_biochana
0.008547945999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
355.0053724
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.41986
vioscreen_calcium_servings
1.77899
vioscreen_calories
1695.4363010000002
vioscreen_carbo
125.52302009999998
vioscreen_cholest
1289.165582
vioscreen_choline
1148.32089
vioscreen_clac9t11
0.068712329
vioscreen_clat10c12
0.015452056
vioscreen_copper
1.009479512
vioscreen_coumest
0.179726023
vioscreen_cystine
1.678301417
vioscreen_d_cheese
0.228191762
vioscreen_d_milk
0.19090411
vioscreen_d_tot_soym
0.419863014
vioscreen_d_total
0.419863014
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.263726033
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.280931447
vioscreen_discfat_oil
9.615369487999999
vioscreen_discfat_sol
44.14898598
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001068493
vioscreen_f_citmlb
0.34926028299999995
vioscreen_f_nj_citmlb
0.34846576
vioscreen_f_nj_other
2.532164357
vioscreen_f_nj_total
2.88062995
vioscreen_f_other
2.532164357
vioscreen_f_total
2.8814245769999998
vioscreen_fat
80.29567637
vioscreen_fiber
22.81517551
vioscreen_fibh2o
7.5254521620000006
vioscreen_fibinso
15.42739726
vioscreen_finished
4/29/15
vioscreen_fish_servings
1.28808
vioscreen_fol_deqv
447.49803080000004
vioscreen_fol_nat
412.82589900000005
vioscreen_fol_syn
20.35728676
vioscreen_formontn
0.002767123
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.33150999999999997
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.8
vioscreen_fructose
24.50030233
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.135698627
vioscreen_g_total
1.409287711
vioscreen_g_whl
0.27358904300000003
vioscreen_galactos
0.06641095799999999
vioscreen_gammtoco
11.26167059
vioscreen_gender
false
vioscreen_genistn
0.063863012
vioscreen_glac
40.58385863
vioscreen_gltc
46.98865582
vioscreen_glucose
21.66339764
vioscreen_glutamic
15.62668424
vioscreen_glycine
4.414520347
vioscreen_glycitn
0.0
vioscreen_grams
4292.041096
vioscreen_hei2010_dairy
1.9
vioscreen_hei2010_empty_calories
16.5
vioscreen_hei2010_fatty_acids
5.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
64.0
vioscreen_hei2010_sea_foods_plant_protiens
2.7
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.7
vioscreen_hei_sat_fat
3.2
vioscreen_hei_score
55.9
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
12.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.5
vioscreen_height
Not provided
vioscreen_histidin
2.778109616
vioscreen_inositol
0.097780829
vioscreen_iron
10.66630191
vioscreen_isoleuc
5.037917715
vioscreen_isomalt
0.0
vioscreen_joules
7093.707534
vioscreen_juice_servings
0.00162
vioscreen_lactitol
0.0
vioscreen_lactose
1.837671233
vioscreen_legumes
0.083150686
vioscreen_leucine
7.8693419570000005
vioscreen_line_gi
219.66183650000002
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
3580.303082
vioscreen_lycopene
3987.9277399999996
vioscreen_lysine
7.568959359
vioscreen_m_egg
6.0117261079999995
vioscreen_m_fish_hi
0.17484931399999998
vioscreen_m_fish_lo
0.559315094
vioscreen_m_frank
0.082684932
vioscreen_m_meat
1.14293146
vioscreen_m_mpf
5.904575797000001
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
3.944821878
vioscreen_m_soy
0.000876712
vioscreen_magnes
264.0935146
vioscreen_maltitol
0.0
vioscreen_maltose
0.932602807
vioscreen_mangan
3.167424617
vioscreen_mannitol
1.070054731
vioscreen_methhis3
22.05397314
vioscreen_methion
2.696246589
vioscreen_mfa141
0.075287675
vioscreen_mfa161
1.9717535990000001
vioscreen_mfa181
30.19378211
vioscreen_mfa201
0.29701370899999996
vioscreen_mfa221
0.039205477999999995
vioscreen_mfatot
32.68567262
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.012301342999999
vioscreen_nccglbr
72.13213292
vioscreen_nccglgr
50.45745398
vioscreen_niacin
17.85052039
vioscreen_niacineq
37.24010863
vioscreen_nitrogen
16.40252167
vioscreen_non_fried_fish_servings
0.8605799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.279095877
vioscreen_oxalic
156.2173908
vioscreen_oxalicm
134.3651755
vioscreen_pantothe
8.950465539
vioscreen_pectins
4.854411253
vioscreen_pfa182
11.09150792
vioscreen_pfa183
0.939232897
vioscreen_pfa184
0.00769863
vioscreen_pfa204
0.609890413
vioscreen_pfa205
0.06821917200000001
vioscreen_pfa225
0.037643832
vioscreen_pfa226
0.22720548
vioscreen_pfatot
13.08550541
vioscreen_phenylal
4.556575075
vioscreen_phosphor
1236.3482880000001
vioscreen_phytic
290.8683433
vioscreen_pinitol
0.0
vioscreen_potass
3275.707877
vioscreen_procdate
10/28/15
vioscreen_proline
4.605041002
vioscreen_protanim
88.19910103
vioscreen_protein
102.2962436
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.09739806
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
454.0
vioscreen_retinol
599.3890839
vioscreen_rgrain
1.143452098
vioscreen_ribofla
2.9630959710000004
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8926
vioscreen_satoco
0.0
vioscreen_selenium
154.2226134
vioscreen_serine
5.243835616
vioscreen_sfa100
0.174273974
vioscreen_sfa120
0.21438358300000002
vioscreen_sfa140
0.9673424290000001
vioscreen_sfa160
15.920493099999998
vioscreen_sfa170
0.100109581
vioscreen_sfa180
6.283423855
vioscreen_sfa200
0.08920547300000001
vioscreen_sfa220
0.052027397
vioscreen_sfa40
0.205890415
vioscreen_sfa60
0.10830137699999999
vioscreen_sfa80
0.07616438099999999
vioscreen_sfatot
24.44739673
vioscreen_sodium
3147.040411
vioscreen_sorbitol
1.4316163780000002
vioscreen_srvid
18611.0
vioscreen_starch
27.08082192
vioscreen_started
4/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.40523464
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.032328768
vioscreen_tfa161t
0.022465756
vioscreen_tfa181t
2.8328492880000002
vioscreen_tfa182t
0.260684957
vioscreen_tgrain
1.359150675
vioscreen_thiamin
1.020931463
vioscreen_threonin
4.402109308
vioscreen_time
25.0
vioscreen_totaltfa
3.1587398999999996
vioscreen_totcla
0.085506852
vioscreen_totfolat
433.1832192
vioscreen_totsugar
61.57089041
vioscreen_tryptoph
1.163068379
vioscreen_tyrosine
3.5808219180000003
vioscreen_user_id
18611.0
vioscreen_v_drkgr
0.8145479390000001
vioscreen_v_orange
0.37652052799999997
vioscreen_v_other
0.965589048
vioscreen_v_potato
0.075972601
vioscreen_v_starcy
0.003917808
vioscreen_v_tomato
0.5775616370000001
vioscreen_v_total
2.8141096560000003
vioscreen_valine
5.420136919
vioscreen_veg5_day
5.6
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
14277.201369999999
vioscreen_vita_rae
1213.394949
vioscreen_vita_re
1827.4053079999999
vioscreen_vitb12
5.370602793
vioscreen_vitb6
2.101972522
vioscreen_vitc
152.6939533
vioscreen_vitd
8.465726001
vioscreen_vitd2
0.000630137
vioscreen_vitd3
8.465123341
vioscreen_vitd_iu
338.62904
vioscreen_vite_iu
13.42010916
vioscreen_vitk
190.227911
vioscreen_water
4002.131164
vioscreen_weight
Not provided
vioscreen_wgrain
0.215698639
vioscreen_whole_grain_servings
0.27359
vioscreen_xylitol
0.052356165999999996
vioscreen_zinc
10.41361703
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)