American Gut Project; 10317.000029558
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633743
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029558
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29558
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
15.82
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
07/08/2015
collection month
July
collection season
Summer
collection time
08:45
collection_timestamp
2015-07-08 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
63.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
155.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
3b86bcdc05deaa836c1f52bc9e0ad8e037a8c3e6ce856f8d4401a74f3aab1a2e16b947cfb1154a880a079bc534e4151da3ba923f8092159ea7a89c127f2fe376
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.1
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029558
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
ce4a7677a89d37e2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.113479447
vioscreen_a_cal
14.16657481
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.561013752
vioscreen_addsugar
12.75578045
vioscreen_adsugtot
11.72926076
vioscreen_age
215.0
vioscreen_alanine
2.47923283
vioscreen_alcohol
1.775232937
vioscreen_alcohol_servings
0.11348
vioscreen_alphacar
3855.730479
vioscreen_alphtoce
15.44167113
vioscreen_alphtoco
14.18454891
vioscreen_arginine
3.3935068630000003
vioscreen_ash
14.8994261
vioscreen_aspartam
0.0
vioscreen_aspartic
5.281807845
vioscreen_avcarb
97.46286387
vioscreen_bcodeid
Not provided
vioscreen_betacar
14036.06164
vioscreen_betacryp
137.7472282
vioscreen_betaine
24.72588827
vioscreen_betatoco
0.347095855
vioscreen_biochana
0.004712329
vioscreen_bmi
Not provided
vioscreen_caffeine
90.91216824
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.20142000000000002
vioscreen_calcium_servings
1.3103
vioscreen_calories
1284.110445
vioscreen_carbo
127.3966503
vioscreen_cholest
251.18745719999998
vioscreen_choline
358.1965967
vioscreen_clac9t11
0.050328764000000005
vioscreen_clat10c12
0.013287671000000001
vioscreen_copper
1.17594546
vioscreen_coumest
0.000410959
vioscreen_cystine
0.669342459
vioscreen_d_cheese
0.07947945299999999
vioscreen_d_milk
0.121917808
vioscreen_d_tot_soym
0.20142466899999997
vioscreen_d_total
0.20142466899999997
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.018054796
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.886027464
vioscreen_discfat_oil
34.83142658
vioscreen_discfat_sol
15.13123395
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.007506849
vioscreen_f_nj_citmlb
0.001972603
vioscreen_f_nj_other
0.861862977
vioscreen_f_nj_total
0.863835583
vioscreen_f_other
0.861862977
vioscreen_f_total
0.869369883
vioscreen_fat
69.44890839
vioscreen_fiber
29.93421715
vioscreen_fibh2o
5.95230228
vioscreen_fibinso
24.45539384
vioscreen_finished
7/5/15
vioscreen_fish_servings
1.26962
vioscreen_fol_deqv
426.6516695
vioscreen_fol_nat
425.2306935
vioscreen_fol_syn
0.835424637
vioscreen_formontn
0.002136986
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.7
vioscreen_fructose
11.6948483
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.027808218
vioscreen_g_total
1.02539723
vioscreen_g_whl
0.9975890279999999
vioscreen_galactos
0.13375341300000002
vioscreen_gammtoco
10.99871107
vioscreen_gender
false
vioscreen_genistn
0.018493151
vioscreen_glac
41.36172945
vioscreen_gltc
49.1130137
vioscreen_glucose
12.34917728
vioscreen_glutamic
8.801424042
vioscreen_glycine
2.1662743140000003
vioscreen_glycitn
0.000027399999999999995
vioscreen_grams
1941.50839
vioscreen_hei2010_dairy
1.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.2
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.8
vioscreen_hei_score
68.7
vioscreen_hei_sodium
0.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
1.270411076
vioscreen_inositol
0.08498630300000001
vioscreen_iron
8.720713827
vioscreen_isoleuc
2.121013485
vioscreen_isomalt
0.0
vioscreen_joules
5372.716781
vioscreen_juice_servings
0.01112
vioscreen_lactitol
0.0
vioscreen_lactose
2.082465687
vioscreen_legumes
0.005232877
vioscreen_leucine
3.532603475
vioscreen_line_gi
274.43439639999997
vioscreen_low_fat_dairy_serving
0.01208
vioscreen_lutzeax
9471.581506999999
vioscreen_lycopene
3464.5520549999997
vioscreen_lysine
3.109999732
vioscreen_m_egg
1.01090414
vioscreen_m_fish_hi
0.41175344799999997
vioscreen_m_fish_lo
0.311753448
vioscreen_m_frank
0.0
vioscreen_m_meat
0.647780829
vioscreen_m_mpf
1.64323279
vioscreen_m_nutsd
2.24876709
vioscreen_m_organ
0.0
vioscreen_m_poult
0.271945211
vioscreen_m_soy
0.00005479999999999999
vioscreen_magnes
303.0238014
vioscreen_maltitol
0.0
vioscreen_maltose
0.969808166
vioscreen_mangan
4.365944723999999
vioscreen_mannitol
0.36369863
vioscreen_methhis3
5.857041282999999
vioscreen_methion
1.007780895
vioscreen_mfa141
0.030739727
vioscreen_mfa161
0.8283287570000001
vioscreen_mfa181
27.56432738
vioscreen_mfa201
0.36613702600000003
vioscreen_mfa221
0.068767124
vioscreen_mfatot
28.98320848
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.18454891
vioscreen_nccglbr
73.13661173
vioscreen_nccglgr
51.15298587
vioscreen_niacin
14.53161788
vioscreen_niacineq
23.69703821
vioscreen_nitrogen
8.392794842
vioscreen_non_fried_fish_servings
1.26962
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7443832609999999
vioscreen_oxalic
234.5758776
vioscreen_oxalicm
252.4474529
vioscreen_pantothe
4.679396872
vioscreen_pectins
6.74819269
vioscreen_pfa182
15.18487666
vioscreen_pfa183
1.528712275
vioscreen_pfa184
0.015068492
vioscreen_pfa204
0.103999997
vioscreen_pfa205
0.052410962
vioscreen_pfa225
0.02090411
vioscreen_pfa226
0.127589051
vioscreen_pfatot
17.06876605
vioscreen_phenylal
2.174904183
vioscreen_phosphor
885.9797089
vioscreen_phytic
575.7650685
vioscreen_pinitol
0.0
vioscreen_potass
2943.150685
vioscreen_procdate
10/28/15
vioscreen_proline
2.3009312459999998
vioscreen_protanim
21.6460282
vioscreen_protein
51.02421875
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.37931293
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
320.0
vioscreen_retinol
183.4316139
vioscreen_rgrain
0.039260274
vioscreen_ribofla
1.1866576309999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.71789
vioscreen_satoco
0.0
vioscreen_selenium
70.04148116
vioscreen_serine
2.457698623
vioscreen_sfa100
0.274547943
vioscreen_sfa120
0.335671286
vioscreen_sfa140
1.103835683
vioscreen_sfa160
10.55550755
vioscreen_sfa170
0.07156164599999999
vioscreen_sfa180
4.142711901
vioscreen_sfa200
0.257205472
vioscreen_sfa220
0.39380819200000006
vioscreen_sfa40
0.341972602
vioscreen_sfa60
0.192739722
vioscreen_sfa80
0.126849323
vioscreen_sfatot
18.01082112
vioscreen_sodium
2487.7205480000002
vioscreen_sorbitol
0.38309585399999996
vioscreen_srvid
20067.0
vioscreen_starch
37.80211098
vioscreen_started
7/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.62306828
vioscreen_sweet_servings
0.40971
vioscreen_tagatose
1.525616371
vioscreen_tfa161t
0.011534245
vioscreen_tfa181t
0.71336996
vioscreen_tfa182t
0.255068489
vioscreen_tgrain
1.036520511
vioscreen_thiamin
0.8783561809999999
vioscreen_threonin
1.961643836
vioscreen_time
18.0
vioscreen_totaltfa
0.982356241
vioscreen_totcla
0.06394520599999999
vioscreen_totfolat
426.0661387
vioscreen_totsugar
47.41786708
vioscreen_tryptoph
0.55123291
vioscreen_tyrosine
1.612465553
vioscreen_user_id
20067.0
vioscreen_v_drkgr
1.891835503
vioscreen_v_orange
0.7532876209999999
vioscreen_v_other
0.907780895
vioscreen_v_potato
0.302082177
vioscreen_v_starcy
0.434712324
vioscreen_v_tomato
0.7255890309999999
vioscreen_v_total
5.015315309
vioscreen_valine
2.478109449
vioscreen_veg5_day
10.7
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
10.0
vioscreen_visit
1.0
vioscreen_vita_iu
27330.99178
vioscreen_vita_rae
1519.4974320000001
vioscreen_vita_re
2855.567466
vioscreen_vitb12
1.823314928
vioscreen_vitb6
1.9684105440000002
vioscreen_vitc
215.9901969
vioscreen_vitd
3.590904257
vioscreen_vitd2
0.000383562
vioscreen_vitd3
3.590520655
vioscreen_vitd_iu
143.63617030000003
vioscreen_vite_iu
21.17679661
vioscreen_vitk
490.57405819999997
vioscreen_water
1686.875
vioscreen_weight
Not provided
vioscreen_wgrain
0.9972602740000001
vioscreen_whole_grain_servings
0.99759
vioscreen_xylitol
0.024356165
vioscreen_zinc
6.88786387
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
38.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)