American Gut Project; 10317.000020551
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632436
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T22:50:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020551
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20551
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
21.3
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2014-11-24
collection month
November
collection season
Fall
collection time
08:20
collection_timestamp
2014-11-24 08:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not provided
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
7.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7380a4f4e3558e61c24e108b4dcf8d4432f1efd333a7993e7716429b9b7629e6a7ed4424670bdd4b91b47a2370a3807931754b0e636d6c428b2fccb18b43097b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by an alternative medicine practitioner
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.0
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020551
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
01c2846a98186aaf
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.072520468
vioscreen_addsugar
8.770027557999999
vioscreen_adsugtot
8.461726107999999
vioscreen_age
214.0
vioscreen_alanine
2.552739559
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
53.69304366
vioscreen_alphtoce
6.320219526
vioscreen_alphtoco
6.147753237000001
vioscreen_arginine
2.7276715
vioscreen_ash
11.88364459
vioscreen_aspartam
0.0
vioscreen_aspartic
4.259917795
vioscreen_avcarb
25.38430009
vioscreen_bcodeid
Not provided
vioscreen_betacar
9147.106164
vioscreen_betacryp
10.93353355
vioscreen_betaine
60.83306935
vioscreen_betatoco
0.037178078999999996
vioscreen_biochana
0.002054795
vioscreen_bmi
Not provided
vioscreen_caffeine
213.11999139999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.49082
vioscreen_calcium_servings
1.8003
vioscreen_calories
649.908262
vioscreen_carbo
34.33991866
vioscreen_cholest
261.3971318
vioscreen_choline
295.8153682
vioscreen_clac9t11
0.07810959
vioscreen_clat10c12
0.019972601
vioscreen_copper
0.601452051
vioscreen_coumest
0.10649314800000001
vioscreen_cystine
0.545452087
vioscreen_d_cheese
0.066493152
vioscreen_d_milk
0.032712328
vioscreen_d_tot_soym
0.490821901
vioscreen_d_total
0.490821901
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.11865752800000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.407698623
vioscreen_discfat_oil
6.572082352000001
vioscreen_discfat_sol
19.8926303
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.026410957000000002
vioscreen_f_nj_citmlb
0.020876712
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.020876712
vioscreen_f_other
0.0
vioscreen_f_total
0.026410957000000002
vioscreen_fat
38.44265839
vioscreen_fiber
8.955452697
vioscreen_fibh2o
2.5806573740000003
vioscreen_fibinso
6.478054768
vioscreen_finished
11/14/14
vioscreen_fish_servings
2.14404
vioscreen_fol_deqv
220.962607
vioscreen_fol_nat
220.0525685
vioscreen_fol_syn
0.536054805
vioscreen_formontn
0.000246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.1
vioscreen_fructose
1.52230141
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.023972603
vioscreen_g_total
0.023972603
vioscreen_g_whl
0.0
vioscreen_galactos
0.476821941
vioscreen_gammtoco
1.541534173
vioscreen_gender
false
vioscreen_genistn
0.038520549
vioscreen_glac
5.118273759
vioscreen_gltc
5.118273759
vioscreen_glucose
2.160356245
vioscreen_glutamic
7.041370131
vioscreen_glycine
2.215013812
vioscreen_glycitn
0.0
vioscreen_grams
3393.393493
vioscreen_hei2010_dairy
5.8
vioscreen_hei2010_empty_calories
11.0
vioscreen_hei2010_fatty_acids
1.9
vioscreen_hei2010_fruit
0.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
49.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.4
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.3
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.8
vioscreen_hei_non_juice_frt
0.4
vioscreen_hei_oils
8.4
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
46.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.294438276
vioscreen_inositol
0.020136987
vioscreen_iron
5.437506689
vioscreen_isoleuc
2.1544381759999998
vioscreen_isomalt
0.0
vioscreen_joules
2719.218664
vioscreen_juice_servings
0.011040000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
6.142520601
vioscreen_legumes
0.0
vioscreen_leucine
3.602685212
vioscreen_line_gi
14.05753425
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
17542.58082
vioscreen_lycopene
166.63361519999998
vioscreen_lysine
3.654055075
vioscreen_m_egg
0.79186301
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.158301367
vioscreen_m_meat
1.998958891
vioscreen_m_mpf
3.532630231
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.153506856
vioscreen_m_soy
0.0
vioscreen_magnes
183.4427868
vioscreen_maltitol
0.0
vioscreen_maltose
0.09090411
vioscreen_mangan
1.908054634
vioscreen_mannitol
0.021452056
vioscreen_methhis3
13.60646538
vioscreen_methion
1.153808259
vioscreen_mfa141
0.087917809
vioscreen_mfa161
1.0033972340000001
vioscreen_mfa181
14.67057336
vioscreen_mfa201
0.285287685
vioscreen_mfa221
0.253616417
vioscreen_mfatot
16.45947667
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
6.147753237000001
vioscreen_nccglbr
12.96512468
vioscreen_nccglgr
9.067698522999999
vioscreen_niacin
9.171918477
vioscreen_niacineq
16.76742428
vioscreen_nitrogen
7.3429032
vioscreen_non_fried_fish_servings
2.14404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.16753423
vioscreen_oxalic
514.2884418000001
vioscreen_oxalicm
546.9879708999999
vioscreen_pantothe
3.350355843
vioscreen_pectins
2.0047125830000003
vioscreen_pfa182
2.656328426
vioscreen_pfa183
0.542356183
vioscreen_pfa184
0.053068495
vioscreen_pfa204
0.12794519699999998
vioscreen_pfa205
0.163479457
vioscreen_pfa225
0.066465754
vioscreen_pfa226
0.342575345
vioscreen_pfatot
4.027205961
vioscreen_phenylal
1.965096084
vioscreen_phosphor
614.2343322
vioscreen_phytic
65.04499144
vioscreen_pinitol
0.0
vioscreen_potass
1711.876027
vioscreen_procdate
10/28/15
vioscreen_proline
2.455917735
vioscreen_protanim
38.23597496
vioscreen_protein
45.81501498
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
7.572054259
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
756.0
vioscreen_retinol
172.0818386
vioscreen_rgrain
0.02320548
vioscreen_ribofla
1.246328694
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.30608
vioscreen_satoco
0.0
vioscreen_selenium
51.11410531
vioscreen_serine
2.126712162
vioscreen_sfa100
0.272931514
vioscreen_sfa120
0.292191785
vioscreen_sfa140
1.325178005
vioscreen_sfa160
7.877452108
vioscreen_sfa170
0.10898629800000001
vioscreen_sfa180
3.351945433
vioscreen_sfa200
0.05230137
vioscreen_sfa220
0.015397258999999998
vioscreen_sfa40
0.327835626
vioscreen_sfa60
0.19608219100000002
vioscreen_sfa80
0.11989040599999999
vioscreen_sfatot
14.11227392
vioscreen_sodium
1588.514897
vioscreen_sorbitol
0.0076164380000000005
vioscreen_srvid
14553.0
vioscreen_starch
2.0850412030000003
vioscreen_started
11/14/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.004328981
vioscreen_sweet_servings
0.0
vioscreen_tagatose
2.789780875
vioscreen_tfa161t
0.056383561
vioscreen_tfa181t
0.997808169
vioscreen_tfa182t
0.122109599
vioscreen_tgrain
0.02320548
vioscreen_thiamin
0.444520464
vioscreen_threonin
1.9196712130000002
vioscreen_time
10.0
vioscreen_totaltfa
1.189013672
vioscreen_totcla
0.09813699599999999
vioscreen_totfolat
220.58863440000002
vioscreen_totsugar
19.6703834
vioscreen_tryptoph
0.456465797
vioscreen_tyrosine
1.659753251
vioscreen_user_id
14553.0
vioscreen_v_drkgr
1.4726575880000001
vioscreen_v_orange
0.0
vioscreen_v_other
0.31868495199999997
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.005561644
vioscreen_v_total
1.796904096
vioscreen_valine
2.5013148480000003
vioscreen_veg5_day
3.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
3.6
vioscreen_visit
1.0
vioscreen_vita_iu
15870.909590000001
vioscreen_vita_rae
937.0336473
vioscreen_vita_re
1701.985959
vioscreen_vitb12
3.817260073
vioscreen_vitb6
0.886657548
vioscreen_vitc
62.44328446
vioscreen_vitd
6.745315176
vioscreen_vitd2
0.0
vioscreen_vitd3
6.745315176
vioscreen_vitd_iu
269.81260699999996
vioscreen_vite_iu
9.154793852000001
vioscreen_vitk
762.1633562000001
vioscreen_water
3271.452055
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.009287670999999999
vioscreen_zinc
6.154931641
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never