American Gut Project; 10317.000020429
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632434
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020429
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
20429
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
21.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-02-13
collection month
February
collection season
Winter
collection time
08:00
collection_timestamp
2015-02-13 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1693.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
f43f4c4c9c946e4318ae71dd6a6aa5637ae54924d09981c2ee8ef321416863b5e33f3bc5b88fe7e7ece5c8f4410b154b9c7511b4a75d9f398ee396695f8489e6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020429
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
4f58d669bbb6793a
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.738739766
vioscreen_addsugar
10.23274026
vioscreen_adsugtot
9.954658069
vioscreen_age
215.0
vioscreen_alanine
4.204466101
vioscreen_alcohol
0.000876712
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
63.866411600000006
vioscreen_alphtoce
19.82397394
vioscreen_alphtoco
18.05799845
vioscreen_arginine
6.276110338
vioscreen_ash
19.46032748
vioscreen_aspartam
0.0
vioscreen_aspartic
8.882027906
vioscreen_avcarb
53.57334118
vioscreen_bcodeid
Not provided
vioscreen_betacar
10281.11575
vioscreen_betacryp
39.62643675
vioscreen_betaine
82.24849636
vioscreen_betatoco
0.597041091
vioscreen_biochana
0.0046575340000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
32.19652183
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.23081999999999997
vioscreen_calcium_servings
1.8861599999999998
vioscreen_calories
1537.544349
vioscreen_carbo
68.13235231
vioscreen_cholest
1147.331678
vioscreen_choline
1001.6219179999999
vioscreen_clac9t11
0.057205477000000005
vioscreen_clat10c12
0.01331507
vioscreen_copper
1.269616448
vioscreen_coumest
0.0007945210000000001
vioscreen_cystine
1.572767284
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.23082191800000001
vioscreen_d_tot_soym
0.23082191800000001
vioscreen_d_total
0.23082191800000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.763918022
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.831808179
vioscreen_discfat_oil
46.64772581
vioscreen_discfat_sol
36.27578125
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.0
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.0
vioscreen_f_other
0.0
vioscreen_f_total
0.0
vioscreen_fat
106.1728596
vioscreen_fiber
14.55802654
vioscreen_fibh2o
2.352082051
vioscreen_fibinso
12.318165400000002
vioscreen_finished
2/3/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
455.72320210000004
vioscreen_fol_nat
414.89443489999996
vioscreen_fol_syn
23.96991652
vioscreen_formontn
0.0034246579999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
1.692630298
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.895452045
vioscreen_g_total
0.895452045
vioscreen_g_whl
0.0
vioscreen_galactos
0.037534246
vioscreen_gammtoco
14.97723272
vioscreen_gender
false
vioscreen_genistn
9.576246788999999
vioscreen_glac
9.809369649
vioscreen_gltc
10.70161668
vioscreen_glucose
6.207342947000001
vioscreen_glutamic
15.68761639
vioscreen_glycine
3.5815068489999997
vioscreen_glycitn
1.594301323
vioscreen_grams
1303.340325
vioscreen_hei2010_dairy
1.2
vioscreen_hei2010_empty_calories
17.3
vioscreen_hei2010_fatty_acids
9.2
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.2
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
50.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.0811506719999997
vioscreen_inositol
0.01728767
vioscreen_iron
14.19986355
vioscreen_isoleuc
4.088411347
vioscreen_isomalt
0.0
vioscreen_joules
6433.084932
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
2.5293972069999997
vioscreen_legumes
0.0
vioscreen_leucine
6.796356619
vioscreen_line_gi
65.72687286
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
20938.99726
vioscreen_lycopene
0.0
vioscreen_lysine
5.0247120480000005
vioscreen_m_egg
6.334739539
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
4.402794574
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
2.968849328
vioscreen_magnes
309.24730310000007
vioscreen_maltitol
0.0
vioscreen_maltose
0.350438366
vioscreen_mangan
3.161561564
vioscreen_mannitol
0.024054793999999997
vioscreen_methhis3
0.0
vioscreen_methion
1.9486303040000001
vioscreen_mfa141
0.035150687
vioscreen_mfa161
1.245753458
vioscreen_mfa181
44.19449112
vioscreen_mfa201
0.479123343
vioscreen_mfa221
0.026054795
vioscreen_mfatot
46.07668022
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
18.05799845
vioscreen_nccglbr
40.17942798
vioscreen_nccglgr
28.11336954
vioscreen_niacin
13.56139769
vioscreen_niacineq
31.72956175
vioscreen_nitrogen
14.81936938
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.042794591
vioscreen_oxalic
756.3093322000001
vioscreen_oxalicm
868.2520548
vioscreen_pantothe
6.196329195
vioscreen_pectins
3.152959118
vioscreen_pfa182
20.73630271
vioscreen_pfa183
0.9118082959999999
vioscreen_pfa184
0.000986301
vioscreen_pfa204
0.44789044100000003
vioscreen_pfa205
0.015972603000000002
vioscreen_pfa225
0.0
vioscreen_pfa226
0.11400000199999999
vioscreen_pfatot
22.23843911
vioscreen_phenylal
4.531753331
vioscreen_phosphor
1143.379709
vioscreen_phytic
766.0880137
vioscreen_pinitol
0.0066575340000000005
vioscreen_potass
2154.9087329999998
vioscreen_procdate
10/28/15
vioscreen_proline
4.727233051
vioscreen_protanim
42.18506796
vioscreen_protein
88.87970355
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
46.69463292
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
575.0
vioscreen_retinol
599.6208475999999
vioscreen_rgrain
2.082274053
vioscreen_ribofla
2.344191794
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.12362000000000001
vioscreen_satoco
0.0
vioscreen_selenium
155.5863656
vioscreen_serine
5.535698376
vioscreen_sfa100
0.328465752
vioscreen_sfa120
0.435726051
vioscreen_sfa140
1.2418630940000002
vioscreen_sfa160
17.49635729
vioscreen_sfa170
0.131369855
vioscreen_sfa180
6.675014046
vioscreen_sfa200
0.417589036
vioscreen_sfa220
0.7072602570000001
vioscreen_sfa40
0.406137043
vioscreen_sfa60
0.238520541
vioscreen_sfa80
0.16024658
vioscreen_sfatot
28.559233199999998
vioscreen_sodium
4627.378767
vioscreen_sorbitol
0.000136986
vioscreen_srvid
17057.0
vioscreen_starch
25.86433005
vioscreen_started
2/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.70227419
vioscreen_sweet_servings
0.28493
vioscreen_tagatose
1.5279726630000001
vioscreen_tfa161t
0.004054795
vioscreen_tfa181t
1.800246649
vioscreen_tfa182t
0.250520555
vioscreen_tgrain
2.082274053
vioscreen_thiamin
1.647698724
vioscreen_threonin
3.482657989
vioscreen_time
10.0
vioscreen_totaltfa
2.054794521
vioscreen_totcla
0.072876713
vioscreen_totfolat
438.8643408
vioscreen_totsugar
22.93246468
vioscreen_tryptoph
1.090082205
vioscreen_tyrosine
3.336822092
vioscreen_user_id
17057.0
vioscreen_v_drkgr
1.443698664
vioscreen_v_orange
0.0
vioscreen_v_other
0.59186301
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
2.035561758
vioscreen_valine
4.592055062
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
19218.80411
vioscreen_vita_rae
1460.692123
vioscreen_vita_re
2321.765411
vioscreen_vitb12
6.170575369
vioscreen_vitb6
1.41326018
vioscreen_vitc
76.26639555
vioscreen_vitd
7.07010983
vioscreen_vitd2
0.0
vioscreen_vitd3
7.07010983
vioscreen_vitd_iu
282.8043932
vioscreen_vite_iu
26.95791952
vioscreen_vitk
837.6489726
vioscreen_water
1053.0452050000001
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.009808219
vioscreen_zinc
9.12799992
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never