10317.000023224; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632649
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023224
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
78.0
age_corrected
78.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23224
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1937.0
bmi
22.51
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
04/02/2015
collection month
April
collection season
Spring
collection time
11:10
collection_timestamp
2015-04-02 11:10
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am ambidextrous
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
152.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
c9ef3650dfe1eef985f5e590269cfe9d7043a3e7ba97d108be43e04fac0eba0058ef2529f93e498fd147352028082d36ba0fd5097e2bb2d921087fc7958da7e4
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
39.1
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-77.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023224
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
0bf638819c941f33
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
2.548986315
vioscreen_a_cal
366.648887
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.43980763
vioscreen_addsugar
49.4888217
vioscreen_adsugtot
43.28660103
vioscreen_age
215.0
vioscreen_alanine
2.941917942
vioscreen_alcohol
36.76473941
vioscreen_alcohol_servings
2.5489900000000003
vioscreen_alphacar
56.773175300000005
vioscreen_alphtoce
5.831753665
vioscreen_alphtoco
5.041644371
vioscreen_arginine
3.4590957430000002
vioscreen_ash
14.647700400000002
vioscreen_aspartam
406.73030819999997
vioscreen_aspartic
5.379616598999999
vioscreen_avcarb
181.8487586
vioscreen_bcodeid
Not provided
vioscreen_betacar
904.5264555
vioscreen_betacryp
165.80630349999998
vioscreen_betaine
180.6430223
vioscreen_betatoco
0.224356184
vioscreen_biochana
0.002109589
vioscreen_bmi
Not provided
vioscreen_caffeine
75.45662992
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.9774200000000001
vioscreen_calcium_servings
2.28592
vioscreen_calories
1755.5238010000003
vioscreen_carbo
193.5961687
vioscreen_cholest
151.9577376
vioscreen_choline
304.5421875
vioscreen_clac9t11
0.08690410800000001
vioscreen_clat10c12
0.020191783
vioscreen_copper
0.953315212
vioscreen_coumest
0.000191781
vioscreen_cystine
0.7156712359999999
vioscreen_d_cheese
0.247917802
vioscreen_d_milk
0.68709583
vioscreen_d_tot_soym
0.977424684
vioscreen_d_total
0.977424684
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
0.018821919
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.83353422
vioscreen_discfat_oil
9.06101509
vioscreen_discfat_sol
29.58150953
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001506849
vioscreen_f_citmlb
0.7750958170000001
vioscreen_f_nj_citmlb
0.018246575
vioscreen_f_nj_other
0.409917795
vioscreen_f_nj_total
0.42816438
vioscreen_f_other
0.409917795
vioscreen_f_total
1.185013612
vioscreen_fat
55.22628425
vioscreen_fiber
11.68150685
vioscreen_fibh2o
3.115835697
vioscreen_fibinso
8.634466636
vioscreen_finished
4/1/15
vioscreen_fish_servings
2.14404
vioscreen_fol_deqv
601.0621575
vioscreen_fol_nat
235.10458050000003
vioscreen_fol_syn
215.22885269999998
vioscreen_formontn
0.001150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.8
vioscreen_frtsumm
2.4
vioscreen_fructose
17.32353382
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
2.53383555
vioscreen_g_total
4.297095395
vioscreen_g_whl
1.763287604
vioscreen_galactos
0.09950684800000001
vioscreen_gammtoco
6.8209867289999995
vioscreen_gender
false
vioscreen_genistn
0.027780825
vioscreen_glac
98.88085402
vioscreen_gltc
104.5406036
vioscreen_glucose
19.57287832
vioscreen_glutamic
11.14405367
vioscreen_glycine
2.647424484
vioscreen_glycitn
0.00139726
vioscreen_grams
2479.079452
vioscreen_hei2010_dairy
4.3
vioscreen_hei2010_empty_calories
8.4
vioscreen_hei2010_fatty_acids
1.8
vioscreen_hei2010_fruit
4.2
vioscreen_hei2010_greens_beans
2.7
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.4
vioscreen_hei2010_veg
2.3
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
6.7
vioscreen_hei_drk_g_org_veg_leg
1.3
vioscreen_hei_fruit
4.2
vioscreen_hei_grains
4.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.3
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
4.3
vioscreen_hei_sat_fat
6.9
vioscreen_hei_score
53.0
vioscreen_hei_sodium
6.7
vioscreen_hei_sol_fat_alc_add_sug
2.6
vioscreen_hei_veg
2.3
vioscreen_hei_whl_grains
3.3
vioscreen_height
Not provided
vioscreen_histidin
1.630356044
vioscreen_inositol
0.33945203799999996
vioscreen_iron
15.524192000000001
vioscreen_isoleuc
2.5626575209999998
vioscreen_isomalt
0.0
vioscreen_joules
7345.110959000001
vioscreen_juice_servings
1.5136399999999999
vioscreen_lactitol
0.0
vioscreen_lactose
10.80224743
vioscreen_legumes
0.0
vioscreen_leucine
4.489588907
vioscreen_line_gi
537.8446918
vioscreen_low_fat_dairy_serving
0.5835899999999999
vioscreen_lutzeax
1318.903082
vioscreen_lycopene
952.1723458999999
vioscreen_lysine
4.061342506
vioscreen_m_egg
0.030301371
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
1.14643839
vioscreen_m_meat
1.288356164
vioscreen_m_mpf
4.200574901
vioscreen_m_nutsd
1.113671206
vioscreen_m_organ
0.0
vioscreen_m_poult
0.543917805
vioscreen_m_soy
0.000383562
vioscreen_magnes
271.6325557
vioscreen_maltitol
0.0
vioscreen_maltose
2.24350703
vioscreen_mangan
3.2991231
vioscreen_mannitol
0.04597261
vioscreen_methhis3
14.83380779
vioscreen_methion
1.355972583
vioscreen_mfa141
0.055205484000000006
vioscreen_mfa161
0.940273922
vioscreen_mfa181
18.01147929
vioscreen_mfa201
0.372027421
vioscreen_mfa221
0.238602751
vioscreen_mfatot
19.71665641
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.041644371
vioscreen_nccglbr
132.89167379999998
vioscreen_nccglgr
92.96989512
vioscreen_niacin
23.37640732
vioscreen_niacineq
33.97854506
vioscreen_nitrogen
10.4543845
vioscreen_non_fried_fish_servings
2.14404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.378849395
vioscreen_oxalic
96.00767337
vioscreen_oxalicm
115.97232450000001
vioscreen_pantothe
3.591478823
vioscreen_pectins
1.616739519
vioscreen_pfa182
8.628767792
vioscreen_pfa183
0.7495616340000001
vioscreen_pfa184
0.053671233
vioscreen_pfa204
0.091945209
vioscreen_pfa205
0.168876721
vioscreen_pfa225
0.07189041
vioscreen_pfa226
0.335589056
vioscreen_pfatot
10.18021993
vioscreen_phenylal
2.51290417
vioscreen_phosphor
1131.45351
vioscreen_phytic
389.3264127
vioscreen_pinitol
0.00005479999999999999
vioscreen_potass
2324.751199
vioscreen_procdate
10/28/15
vioscreen_proline
3.7641645039999996
vioscreen_protanim
40.90989405
vioscreen_protein
64.2908765
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.38005405
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
504.0
vioscreen_retinol
375.2109161
vioscreen_rgrain
2.908575356
vioscreen_ribofla
1.848109415
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8106
vioscreen_satoco
0.0
vioscreen_selenium
87.14808433
vioscreen_serine
2.659041062
vioscreen_sfa100
0.498547949
vioscreen_sfa120
1.393753344
vioscreen_sfa140
2.100904156
vioscreen_sfa160
10.16843897
vioscreen_sfa170
0.07265753
vioscreen_sfa180
5.091013284
vioscreen_sfa200
0.124465744
vioscreen_sfa220
0.19002739899999999
vioscreen_sfa40
0.443150685
vioscreen_sfa60
0.254465767
vioscreen_sfa80
0.289506823
vioscreen_sfatot
20.85203072
vioscreen_sodium
2178.1388699999998
vioscreen_sorbitol
0.318109591
vioscreen_srvid
18419.0
vioscreen_starch
51.24473994
vioscreen_started
4/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.94276541
vioscreen_sweet_servings
2.26784
vioscreen_tagatose
1.52200008
vioscreen_tfa161t
0.036958906
vioscreen_tfa181t
1.34013697
vioscreen_tfa182t
0.306273975
vioscreen_tgrain
4.498465593
vioscreen_thiamin
1.4260549880000002
vioscreen_threonin
2.23295865
vioscreen_time
30.0
vioscreen_totaltfa
1.7653423990000001
vioscreen_totcla
0.107753419
vioscreen_totfolat
450.3332192
vioscreen_totsugar
91.43928724
vioscreen_tryptoph
0.6357533910000001
vioscreen_tyrosine
1.997643876
vioscreen_user_id
18419.0
vioscreen_v_drkgr
0.18734247899999998
vioscreen_v_orange
0.0
vioscreen_v_other
0.313479468
vioscreen_v_potato
0.07547945
vioscreen_v_starcy
0.09906849300000001
vioscreen_v_tomato
0.19484932300000002
vioscreen_v_total
0.870191684
vioscreen_valine
2.948876953
vioscreen_veg5_day
1.5
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
1.7
vioscreen_visit
1.0
vioscreen_vita_iu
2945.0527399999996
vioscreen_vita_rae
459.86258560000005
vioscreen_vita_re
544.5138699
vioscreen_vitb12
5.230328286000001
vioscreen_vitb6
1.8936714069999998
vioscreen_vitc
103.015839
vioscreen_vitd
8.842575449
vioscreen_vitd2
0.0
vioscreen_vitd3
8.842575449
vioscreen_vitd_iu
353.70301800000004
vioscreen_vite_iu
7.518685119
vioscreen_vitk
69.68868258
vioscreen_water
2137.538356
vioscreen_weight
Not provided
vioscreen_wgrain
1.589890571
vioscreen_whole_grain_servings
1.7632900000000002
vioscreen_xylitol
0.021643835
vioscreen_zinc
9.761342171
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
75.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)