American Gut Project; 10317.000029396
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633710
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029396
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29396
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1963.0
bmi
29.65
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/09/2015
collection month
July
collection season
Summer
collection time
21:55
collection_timestamp
2015-07-09 21:55
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
193.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2bd41567dc9270c2ad42aa302a758cc4670f097b098c4ca5424c4b2e0bb210e55365d72f6d73f37e3403cfb9cdccdee4b18099555135ca4ec98a3ee86513dc57
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.1
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-1.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029396
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
77d0b97f9dd7f37b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.48386264
vioscreen_addsugar
53.22641267
vioscreen_adsugtot
48.22274187
vioscreen_age
215.0
vioscreen_alanine
5.535479317999999
vioscreen_alcohol
0.021424658
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
579.1875428
vioscreen_alphtoce
10.16666042
vioscreen_alphtoco
9.108603783
vioscreen_arginine
6.311315416
vioscreen_ash
24.67772902
vioscreen_aspartam
0.0
vioscreen_aspartic
11.12909621
vioscreen_avcarb
235.22557790000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
3674.125
vioscreen_betacryp
79.65169628
vioscreen_betaine
129.88990800000002
vioscreen_betatoco
0.270931463
vioscreen_biochana
0.013671233999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
105.4058112
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.65795
vioscreen_calcium_servings
4.39647
vioscreen_calories
2181.901884
vioscreen_carbo
264.3214683
vioscreen_cholest
367.39520550000003
vioscreen_choline
537.4282534
vioscreen_clac9t11
0.18312331899999998
vioscreen_clat10c12
0.034000002
vioscreen_copper
1.885972114
vioscreen_coumest
0.027753422000000003
vioscreen_cystine
1.4235615769999999
vioscreen_d_cheese
0.31657533
vioscreen_d_milk
1.8396439230000001
vioscreen_d_tot_soym
2.657945105
vioscreen_d_total
2.657945105
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.129424652
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.1075615030000003
vioscreen_discfat_oil
14.56775337
vioscreen_discfat_sol
41.76945099
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002219178
vioscreen_f_citmlb
0.6840274340000001
vioscreen_f_nj_citmlb
0.677780862
vioscreen_f_nj_other
1.312986275
vioscreen_f_nj_total
1.990794561
vioscreen_f_other
1.312986275
vioscreen_f_total
1.997041216
vioscreen_fat
78.94053403
vioscreen_fiber
29.08534354
vioscreen_fibh2o
8.366548052
vioscreen_fibinso
20.790794899999998
vioscreen_finished
7/8/15
vioscreen_fish_servings
3.1490400000000003
vioscreen_fol_deqv
400.941738
vioscreen_fol_nat
309.8772046
vioscreen_fol_syn
53.52054795
vioscreen_formontn
0.003643835
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.0
vioscreen_fructose
24.75706068
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.072410772
vioscreen_g_total
5.0415891880000006
vioscreen_g_whl
2.969178082
vioscreen_galactos
0.70432873
vioscreen_gammtoco
9.289917996
vioscreen_gender
false
vioscreen_genistn
0.18599997699999998
vioscreen_glac
116.61565709999999
vioscreen_gltc
129.31072350000002
vioscreen_glucose
24.03027344
vioscreen_glutamic
20.85367214
vioscreen_glycine
4.693725251
vioscreen_glycitn
0.027835616
vioscreen_grams
4510.998973
vioscreen_hei2010_dairy
9.4
vioscreen_hei2010_empty_calories
15.4
vioscreen_hei2010_fatty_acids
0.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.1
vioscreen_hei_drk_g_org_veg_leg
4.4
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.6
vioscreen_hei_sat_fat
3.3
vioscreen_hei_score
76.8
vioscreen_hei_sodium
4.7
vioscreen_hei_sol_fat_alc_add_sug
16.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
3.189123702
vioscreen_inositol
0.146493133
vioscreen_iron
15.52906946
vioscreen_isoleuc
5.303233358
vioscreen_isomalt
0.0
vioscreen_joules
9129.076712
vioscreen_juice_servings
0.012490000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
32.21364512
vioscreen_legumes
0.193753428
vioscreen_leucine
8.978192557
vioscreen_line_gi
577.5627997
vioscreen_low_fat_dairy_serving
1.93153
vioscreen_lutzeax
4129.530479
vioscreen_lycopene
6466.089726
vioscreen_lysine
8.554437339
vioscreen_m_egg
0.618493151
vioscreen_m_fish_hi
1.368630187
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.161890401
vioscreen_m_meat
1.892410905
vioscreen_m_mpf
6.675808005
vioscreen_m_nutsd
1.160547962
vioscreen_m_organ
0.0
vioscreen_m_poult
2.82695881
vioscreen_m_soy
0.002767123
vioscreen_magnes
459.8451199
vioscreen_maltitol
0.0
vioscreen_maltose
2.512465887
vioscreen_mangan
5.081316219
vioscreen_mannitol
0.46369867200000003
vioscreen_methhis3
27.33594553
vioscreen_methion
2.7429863080000003
vioscreen_mfa141
0.09706848400000001
vioscreen_mfa161
1.465643729
vioscreen_mfa181
24.02170109
vioscreen_mfa201
0.421945232
vioscreen_mfa221
0.245232883
vioscreen_mfatot
26.47008241
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.108603783
vioscreen_nccglbr
181.904238
vioscreen_nccglgr
127.2384739
vioscreen_niacin
28.40224476
vioscreen_niacineq
49.64337543
vioscreen_nitrogen
18.71759017
vioscreen_non_fried_fish_servings
3.1490400000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9392604880000002
vioscreen_oxalic
274.5918878
vioscreen_oxalicm
285.05804789999996
vioscreen_pantothe
7.530876766
vioscreen_pectins
4.782876712
vioscreen_pfa182
11.72747886
vioscreen_pfa183
1.206493221
vioscreen_pfa184
0.05523287599999999
vioscreen_pfa204
0.226602716
vioscreen_pfa205
0.18241094300000002
vioscreen_pfa225
0.09306848599999999
vioscreen_pfa226
0.403671181
vioscreen_pfatot
14.01334279
vioscreen_phenylal
5.033315162
vioscreen_phosphor
1887.682363
vioscreen_phytic
806.1581336
vioscreen_pinitol
0.002246575
vioscreen_potass
4410.330479
vioscreen_procdate
10/28/15
vioscreen_proline
6.6390966129999995
vioscreen_protanim
83.96866438
vioscreen_protein
115.75116650000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.77520869
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
310.0
vioscreen_retinol
567.0395547999999
vioscreen_rgrain
2.299972576
vioscreen_ribofla
2.566493204
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.04942
vioscreen_satoco
0.0
vioscreen_selenium
144.9991224
vioscreen_serine
5.37726014
vioscreen_sfa100
0.818876752
vioscreen_sfa120
1.33046574
vioscreen_sfa140
3.242466088
vioscreen_sfa160
15.98991733
vioscreen_sfa170
0.143643836
vioscreen_sfa180
7.151397287000001
vioscreen_sfa200
0.148246577
vioscreen_sfa220
0.195726034
vioscreen_sfa40
0.913452065
vioscreen_sfa60
0.5384931589999999
vioscreen_sfa80
0.412849322
vioscreen_sfatot
31.30840914
vioscreen_sodium
3211.467466
vioscreen_sorbitol
0.912054778
vioscreen_srvid
20098.0
vioscreen_starch
92.80923587
vioscreen_started
7/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
46.15569349
vioscreen_sweet_servings
1.0453299999999999
vioscreen_tagatose
5.495808139
vioscreen_tfa161t
0.0539726
vioscreen_tfa181t
1.896219165
vioscreen_tfa182t
0.403671265
vioscreen_tgrain
5.054904217
vioscreen_thiamin
1.633862806
vioscreen_threonin
4.539452456
vioscreen_time
29.0
vioscreen_totaltfa
2.461479459
vioscreen_totcla
0.21835617699999998
vioscreen_totfolat
363.3977312
vioscreen_totsugar
131.56864299999998
vioscreen_tryptoph
1.274082132
vioscreen_tyrosine
4.132027906
vioscreen_user_id
20098.0
vioscreen_v_drkgr
0.49369862200000003
vioscreen_v_orange
0.081753425
vioscreen_v_other
0.5744109270000001
vioscreen_v_potato
1.134657601
vioscreen_v_starcy
0.128767123
vioscreen_v_tomato
0.9336164920000001
vioscreen_v_total
3.346849583
vioscreen_valine
6.121232877000001
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.7
vioscreen_visit
1.0
vioscreen_vita_iu
8560.064384000001
vioscreen_vita_rae
900.6691781
vioscreen_vita_re
1234.297517
vioscreen_vitb12
6.829286842
vioscreen_vitb6
2.608548266
vioscreen_vitc
136.8318279
vioscreen_vitd
13.31662832
vioscreen_vitd2
0.000356164
vioscreen_vitd3
13.31627247
vioscreen_vitd_iu
532.6651327
vioscreen_vite_iu
13.57734375
vioscreen_vitk
206.37767549999998
vioscreen_water
4063.7541100000003
vioscreen_weight
Not provided
vioscreen_wgrain
2.754931473
vioscreen_whole_grain_servings
2.9691799999999997
vioscreen_xylitol
0.039150687
vioscreen_zinc
15.19673855
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
88.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)