American Gut Project; 10317.000029175
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633283
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029175
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29175
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
18.56
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Five or more
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-26
collection month
June
collection season
Summer
collection time
08:30
collection_timestamp
2015-06-26 08:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
521.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
b1ac9b1d2ce59a9fb1d3beda02cb8ad0527cba85bec0171078291b4cf3fae5410a392ac79f1298987d27b996f309b73503d2e2c28c6175d5854227f4ed7ed365
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
30.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-99.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029175
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
79b46804b96defe4
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.744356171
vioscreen_addsugar
4.6152056130000005
vioscreen_adsugtot
3.876986234
vioscreen_age
215.0
vioscreen_alanine
11.39320553
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
6503.7445210000005
vioscreen_alphtoce
32.75066353
vioscreen_alphtoco
31.42227633
vioscreen_arginine
12.40090566
vioscreen_ash
56.69635595
vioscreen_aspartam
0.0
vioscreen_aspartic
19.48013699
vioscreen_avcarb
91.17486087
vioscreen_bcodeid
Not provided
vioscreen_betacar
27237.6411
vioscreen_betacryp
1132.459589
vioscreen_betaine
86.96487586
vioscreen_betatoco
0.384712324
vioscreen_biochana
0.009726028000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
20.24153468
vioscreen_calcium
true
vioscreen_calcium_avg
1285.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
0.22271
vioscreen_calcium_servings
2.50893
vioscreen_calories
3191.072945
vioscreen_carbo
126.0738014
vioscreen_cholest
1279.543493
vioscreen_choline
1255.631507
vioscreen_clac9t11
0.253561631
vioscreen_clat10c12
0.059342470999999994
vioscreen_copper
1.946136725
vioscreen_coumest
0.0017260270000000002
vioscreen_cystine
2.6841370469999997
vioscreen_d_cheese
0.075205476
vioscreen_d_milk
0.147369866
vioscreen_d_tot_soym
0.222712331
vioscreen_d_total
0.222712331
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.062219181
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.129589008
vioscreen_discfat_oil
99.18362586
vioscreen_discfat_sol
57.49183433
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003260274
vioscreen_f_citmlb
0.49693152
vioscreen_f_nj_citmlb
0.474931524
vioscreen_f_nj_other
0.780849342
vioscreen_f_nj_total
1.255780865
vioscreen_f_other
0.780849342
vioscreen_f_total
1.277780778
vioscreen_fat
214.43627999999998
vioscreen_fiber
34.89953981
vioscreen_fibh2o
8.129781142999999
vioscreen_fibinso
26.935260600000003
vioscreen_finished
6/23/15
vioscreen_fish_servings
6.5925
vioscreen_fol_deqv
649.358262
vioscreen_fol_nat
643.8663955
vioscreen_fol_syn
3.230273772
vioscreen_formontn
0.0017260270000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.6
vioscreen_fructose
18.28731271
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.14032877
vioscreen_g_total
1.316082178
vioscreen_g_whl
1.175753408
vioscreen_galactos
0.200986303
vioscreen_gammtoco
11.54123368
vioscreen_gender
false
vioscreen_genistn
0.008958904
vioscreen_glac
26.59082299
vioscreen_gltc
32.77643943
vioscreen_glucose
18.51060172
vioscreen_glutamic
31.63446597
vioscreen_glycine
9.743397501
vioscreen_glycitn
0.0000822
vioscreen_grams
5751.363699
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.8
vioscreen_hei2010_fruit
2.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.9
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.5
vioscreen_hei_grains
0.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
4.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
5.782274052999999
vioscreen_inositol
0.080136986
vioscreen_iron
19.71843964
vioscreen_isoleuc
9.513369542000001
vioscreen_isomalt
0.0
vioscreen_joules
13351.43836
vioscreen_juice_servings
0.044000000000000004
vioscreen_lactitol
0.0
vioscreen_lactose
1.481095991
vioscreen_legumes
0.0
vioscreen_leucine
15.25013645
vioscreen_line_gi
273.12264550000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
14289.91507
vioscreen_lycopene
10448.73425
vioscreen_lysine
16.11775337
vioscreen_m_egg
4.033452282
vioscreen_m_fish_hi
2.184630177
vioscreen_m_fish_lo
1.572273986
vioscreen_m_frank
0.0
vioscreen_m_meat
6.861863228
vioscreen_m_mpf
18.070301800000003
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
7.451644103
vioscreen_m_soy
0.000219178
vioscreen_magnes
469.006464
vioscreen_maltitol
0.0
vioscreen_maltose
0.19243835
vioscreen_mangan
3.8635621789999997
vioscreen_mannitol
0.791588937
vioscreen_methhis3
72.42849422
vioscreen_methion
5.224027451
vioscreen_mfa141
0.214164379
vioscreen_mfa161
4.332438263
vioscreen_mfa181
102.1429045
vioscreen_mfa201
0.931424661
vioscreen_mfa221
0.394876726
vioscreen_mfatot
108.41587109999999
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
31.42227633
vioscreen_nccglbr
63.82308968
vioscreen_nccglgr
44.63517498
vioscreen_niacin
48.63449807
vioscreen_niacineq
82.99377676
vioscreen_nitrogen
31.79851777
vioscreen_non_fried_fish_servings
6.5925
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.424273932
vioscreen_oxalic
476.90021399999995
vioscreen_oxalicm
433.7131421
vioscreen_pantothe
11.721372
vioscreen_pectins
7.3063837760000006
vioscreen_pfa182
26.64761612
vioscreen_pfa183
3.092931293
vioscreen_pfa184
0.084328769
vioscreen_pfa204
0.7559725829999999
vioscreen_pfa205
0.316520545
vioscreen_pfa225
0.17912328
vioscreen_pfa226
0.7550959340000001
vioscreen_pfatot
32.01087864
vioscreen_phenylal
8.241177494
vioscreen_phosphor
2153.469521
vioscreen_phytic
549.6654110000001
vioscreen_pinitol
0.0
vioscreen_potass
5640.578425
vioscreen_procdate
10/28/15
vioscreen_proline
8.446849582999999
vioscreen_protanim
175.9963185
vioscreen_protein
198.39884419999998
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.40501258
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
373.0
vioscreen_retinol
679.1120718999999
vioscreen_rgrain
0.090164383
vioscreen_ribofla
2.924329115
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
10.25638
vioscreen_satoco
0.0
vioscreen_selenium
255.0591182
vioscreen_serine
8.818492482
vioscreen_sfa100
0.931397237
vioscreen_sfa120
1.0015618309999998
vioscreen_sfa140
3.73687694
vioscreen_sfa160
35.08657427
vioscreen_sfa170
0.388356164
vioscreen_sfa180
12.24369649
vioscreen_sfa200
0.48416438700000003
vioscreen_sfa220
0.199205456
vioscreen_sfa40
1.137095914
vioscreen_sfa60
0.7030410559999999
vioscreen_sfa80
0.42482186899999996
vioscreen_sfatot
56.6538795
vioscreen_sodium
14928.08082
vioscreen_sorbitol
0.07002739599999999
vioscreen_srvid
19957.0
vioscreen_starch
31.37906678
vioscreen_started
6/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.01243846
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.007643835999999999
vioscreen_tfa161t
0.08739725400000001
vioscreen_tfa181t
3.3490137389999997
vioscreen_tfa182t
0.46635616799999996
vioscreen_tgrain
1.265506859
vioscreen_thiamin
1.618822072
vioscreen_threonin
8.530383802000001
vioscreen_time
19.0
vioscreen_totaltfa
3.917616251
vioscreen_totcla
0.315342462
vioscreen_totfolat
647.0966182
vioscreen_totsugar
51.76911922
vioscreen_tryptoph
2.059150591
vioscreen_tyrosine
6.771396752
vioscreen_user_id
19957.0
vioscreen_v_drkgr
1.452054795
vioscreen_v_orange
1.291643869
vioscreen_v_other
3.128466128
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
2.167287497
vioscreen_v_total
8.039478542000001
vioscreen_valine
10.15071302
vioscreen_veg5_day
20.7
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
16.1
vioscreen_visit
1.0
vioscreen_vita_iu
54023.51233
vioscreen_vita_rae
3267.096575
vioscreen_vita_re
5855.073973
vioscreen_vitb12
10.97630097
vioscreen_vitb6
4.877917982
vioscreen_vitc
547.7018836
vioscreen_vitd
16.5188209
vioscreen_vitd2
0.001589041
vioscreen_vitd3
16.51723165
vioscreen_vitd_iu
660.752836
vioscreen_vite_iu
46.91358626
vioscreen_vitk
754.7695205
vioscreen_water
5187.915068
vioscreen_weight
Not provided
vioscreen_wgrain
1.175342466
vioscreen_whole_grain_servings
1.17575
vioscreen_xylitol
0.039589043
vioscreen_zinc
23.41504441
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
52.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)