American Gut Project; 10317.000031872
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634348
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031872
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031872
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
3177.88
bmi_cat
Not provided
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-08-15
collection month
August
collection season
Summer
collection time
09:00
collection_timestamp
2015-08-15 09:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
61.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
12.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
2bc9e11c5f605b9712e18b23abb40ec17f7851700bfd9b8924929280c087c09e13ae0d5f4c8d550e6ff691f45b045dfa46aacc87da9b9a1d469c495ac4e53675
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.5
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-123.0
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
Not provided
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031872
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
e3bdd1b298a2b15c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00109589
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.782027237
vioscreen_addsugar
37.80134311
vioscreen_adsugtot
32.04980736
vioscreen_age
215.0
vioscreen_alanine
1.8490135719999998
vioscreen_alcohol
0.00539726
vioscreen_alcohol_servings
0.0011
vioscreen_alphacar
311.3377783
vioscreen_alphtoce
14.21635675
vioscreen_alphtoco
12.96657347
vioscreen_arginine
3.596164317
vioscreen_ash
19.119727899999997
vioscreen_aspartam
0.0
vioscreen_aspartic
5.7570412829999995
vioscreen_avcarb
183.77641269999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
5465.841438
vioscreen_betacryp
317.91269260000007
vioscreen_betaine
74.25389555
vioscreen_betatoco
0.593424674
vioscreen_biochana
0.006958904
vioscreen_bmi
Not provided
vioscreen_caffeine
91.28152825
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.05458
vioscreen_calcium_servings
1.37964
vioscreen_calories
1438.6392119999998
vioscreen_carbo
218.33529539999998
vioscreen_cholest
4.075534434
vioscreen_choline
185.29721750000002
vioscreen_clac9t11
0.0026027389999999997
vioscreen_clat10c12
0.004520548
vioscreen_copper
1.9814247440000001
vioscreen_coumest
0.06778082099999999
vioscreen_cystine
0.760219125
vioscreen_d_cheese
0.011835616
vioscreen_d_milk
0.04273972400000001
vioscreen_d_tot_soym
0.054575337
vioscreen_d_total
0.054575337
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.896190737
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.266849716
vioscreen_discfat_oil
25.51797143
vioscreen_discfat_sol
2.433369843
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.8080548009999999
vioscreen_f_nj_citmlb
0.8061096190000001
vioscreen_f_nj_other
1.2267123290000002
vioscreen_f_nj_total
2.03287688
vioscreen_f_other
1.2267123290000002
vioscreen_f_total
2.034849569
vioscreen_fat
51.22273116
vioscreen_fiber
34.55638378
vioscreen_fibh2o
10.80073978
vioscreen_fibinso
23.80057791
vioscreen_finished
8/13/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
396.8737158
vioscreen_fol_nat
370.6211473
vioscreen_fol_syn
15.43887521
vioscreen_formontn
0.0032328770000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.1
vioscreen_fructose
27.35402932
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.731945132
vioscreen_g_total
4.374575597
vioscreen_g_whl
3.6426302980000003
vioscreen_galactos
0.35567121100000004
vioscreen_gammtoco
9.903287537
vioscreen_gender
false
vioscreen_genistn
7.309123502
vioscreen_glac
84.76283176
vioscreen_gltc
96.38135702
vioscreen_glucose
27.58082727
vioscreen_glutamic
9.459040561
vioscreen_glycine
2.127561637
vioscreen_glycitn
1.108493167
vioscreen_grams
2831.433733
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.043287721
vioscreen_inositol
0.152136993
vioscreen_iron
11.53909594
vioscreen_isoleuc
1.6328767119999998
vioscreen_isomalt
0.0
vioscreen_joules
6019.264384
vioscreen_juice_servings
0.00389
vioscreen_lactitol
0.0
vioscreen_lactose
0.451150638
vioscreen_legumes
0.081534247
vioscreen_leucine
3.0154524289999998
vioscreen_line_gi
425.31823629999997
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5371.693493
vioscreen_lycopene
2751.7339039999997
vioscreen_lysine
2.006273745
vioscreen_m_egg
0.0016712329999999998
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.010547945
vioscreen_m_mpf
0.010547945
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.6737259959999999
vioscreen_magnes
432.9647688
vioscreen_maltitol
0.0
vioscreen_maltose
2.814657467
vioscreen_mangan
6.349999331
vioscreen_mannitol
0.248027415
vioscreen_methhis3
0.062328767
vioscreen_methion
0.628328757
vioscreen_mfa141
0.004849315
vioscreen_mfa161
0.199561634
vioscreen_mfa181
21.77487693
vioscreen_mfa201
0.35054793700000003
vioscreen_mfa221
0.00909589
vioscreen_mfatot
22.39673855
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.96657347
vioscreen_nccglbr
150.22581340000002
vioscreen_nccglgr
105.07489299999999
vioscreen_niacin
17.38906919
vioscreen_niacineq
26.54586366
vioscreen_nitrogen
8.260521458
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.7407122890000001
vioscreen_oxalic
348.4144906
vioscreen_oxalicm
361.897089
vioscreen_pantothe
4.421452938
vioscreen_pectins
6.0220555970000005
vioscreen_pfa182
14.7140839
vioscreen_pfa183
0.738575306
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.0013698629999999998
vioscreen_pfa205
0.001068493
vioscreen_pfa225
0.000027399999999999995
vioscreen_pfa226
0.00005479999999999999
vioscreen_pfatot
15.47276595
vioscreen_phenylal
2.1296436880000003
vioscreen_phosphor
1087.39786
vioscreen_phytic
1275.998288
vioscreen_pinitol
0.059643837000000005
vioscreen_potass
3331.1934929999998
vioscreen_procdate
10/28/15
vioscreen_proline
2.27172584
vioscreen_protanim
1.098849362
vioscreen_protein
47.97243151
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
46.88133027
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
204.0
vioscreen_retinol
28.885150899999996
vioscreen_rgrain
0.686931537
vioscreen_ribofla
0.9544110020000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.2560000000000002
vioscreen_satoco
0.0
vioscreen_selenium
77.99114940000001
vioscreen_serine
2.3662192980000003
vioscreen_sfa100
0.0220274
vioscreen_sfa120
0.13452055400000001
vioscreen_sfa140
0.23323286899999998
vioscreen_sfa160
6.03112492
vioscreen_sfa170
0.01120548
vioscreen_sfa180
1.7240272840000002
vioscreen_sfa200
0.31186301899999996
vioscreen_sfa220
0.673452048
vioscreen_sfa40
0.013205479
vioscreen_sfa60
0.0062191780000000006
vioscreen_sfa80
0.015095891
vioscreen_sfatot
9.522329167999999
vioscreen_sodium
3082.815068
vioscreen_sorbitol
0.80356161
vioscreen_srvid
20397.0
vioscreen_starch
86.0041845
vioscreen_started
8/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.37536922
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.00060274
vioscreen_tfa161t
0.000630137
vioscreen_tfa181t
0.263095866
vioscreen_tfa182t
0.034246578
vioscreen_tgrain
4.470328888
vioscreen_thiamin
1.330876599
vioscreen_threonin
1.399452105
vioscreen_time
21.0
vioscreen_totaltfa
0.328219207
vioscreen_totcla
0.00709589
vioscreen_totfolat
386.0600171
vioscreen_totsugar
81.97375856
vioscreen_tryptoph
0.55030133
vioscreen_tyrosine
1.4093148009999998
vioscreen_user_id
20397.0
vioscreen_v_drkgr
0.596794484
vioscreen_v_orange
0.065780823
vioscreen_v_other
2.266219298
vioscreen_v_potato
0.99216434
vioscreen_v_starcy
0.046191782
vioscreen_v_tomato
0.405397264
vioscreen_v_total
4.372630163999999
vioscreen_valine
2.01756157
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
8.7
vioscreen_visit
1.0
vioscreen_vita_iu
9732.854795000001
vioscreen_vita_rae
510.59306510000005
vioscreen_vita_re
992.2988014
vioscreen_vitb12
0.362493186
vioscreen_vitb6
1.842081984
vioscreen_vitc
180.5325985
vioscreen_vitd
0.114657541
vioscreen_vitd2
0.0
vioscreen_vitd3
0.114657541
vioscreen_vitd_iu
4.5863016210000005
vioscreen_vite_iu
19.33991733
vioscreen_vitk
214.9516267
vioscreen_water
2502.988014
vioscreen_weight
Not provided
vioscreen_wgrain
3.783424524
vioscreen_whole_grain_servings
3.6426300000000005
vioscreen_xylitol
0.074547948
vioscreen_zinc
8.447205426
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
51.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily