American Gut Project; 10317.000029479
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633728
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029479
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
38.0
age_corrected
38.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29479
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1977.0
bmi
19.71
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/09/2015
collection month
July
collection season
Summer
collection time
15:00
collection_timestamp
2015-07-09 15:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
3.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
183.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
b004a71706377e68368d51d5bc5cece0c0f59b6fd119acacef426c048395b17fc9848545bad210278ac778b601075c9889574fd3045db6dba0b44e6a68a60930
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-0.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029479
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
4005ed69fa320e8b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0037260270000000002
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.596054955
vioscreen_addsugar
33.13800032
vioscreen_adsugtot
23.36293343
vioscreen_age
215.0
vioscreen_alanine
4.277287564
vioscreen_alcohol
0.018986301
vioscreen_alcohol_servings
0.00373
vioscreen_alphacar
4149.624315
vioscreen_alphtoce
22.12788956
vioscreen_alphtoco
18.95682256
vioscreen_arginine
6.258685386
vioscreen_ash
27.79934718
vioscreen_aspartam
0.0
vioscreen_aspartic
9.963671206
vioscreen_avcarb
155.1491331
vioscreen_bcodeid
Not provided
vioscreen_betacar
24458.8137
vioscreen_betacryp
403.3130565
vioscreen_betaine
106.17441140000001
vioscreen_betatoco
0.98243843
vioscreen_biochana
0.06706849200000001
vioscreen_bmi
Not provided
vioscreen_caffeine
214.4240796
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.15852
vioscreen_calcium_servings
2.78551
vioscreen_calories
1810.792808
vioscreen_carbo
203.5244863
vioscreen_cholest
148.07451840000002
vioscreen_choline
418.9742723
vioscreen_clac9t11
0.018109588
vioscreen_clat10c12
0.0061917809999999995
vioscreen_copper
3.031342305
vioscreen_coumest
0.318383559
vioscreen_cystine
1.067123204
vioscreen_d_cheese
0.09701369800000001
vioscreen_d_milk
0.061506850999999994
vioscreen_d_tot_soym
0.476328769
vioscreen_d_total
0.15852053900000002
vioscreen_d_yogurt
0.0
vioscreen_daidzein
33.11775471
vioscreen_database
NDSR - V44
vioscreen_delttoco
13.72219071
vioscreen_discfat_oil
31.14026916
vioscreen_discfat_sol
16.40797303
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000383562
vioscreen_f_citmlb
0.338547923
vioscreen_f_nj_citmlb
0.329534243
vioscreen_f_nj_other
0.43745205
vioscreen_f_nj_total
0.766986335
vioscreen_f_other
0.43745205
vioscreen_f_total
0.775999973
vioscreen_fat
82.78195099
vioscreen_fiber
48.34351456
vioscreen_fibh2o
10.53627261
vioscreen_fibinso
37.81101509
vioscreen_finished
6/28/15
vioscreen_fish_servings
2.14404
vioscreen_fol_deqv
701.9637414
vioscreen_fol_nat
666.762714
vioscreen_fol_syn
20.68104131
vioscreen_formontn
0.007945206
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.6
vioscreen_fructose
17.385533499999998
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.339917745
vioscreen_g_total
1.49293146
vioscreen_g_whl
0.152986302
vioscreen_galactos
0.21621917300000001
vioscreen_gammtoco
26.34945687
vioscreen_gender
false
vioscreen_genistn
51.93395227
vioscreen_glac
55.83893408
vioscreen_gltc
68.92926477
vioscreen_glucose
21.18345596
vioscreen_glutamic
16.16364512
vioscreen_glycine
3.88947988
vioscreen_glycitn
5.511862892999999
vioscreen_grams
4542.489726
vioscreen_hei2010_dairy
2.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
70.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
2.2052602269999997
vioscreen_inositol
0.215397268
vioscreen_iron
20.59569911
vioscreen_isoleuc
3.821781023
vioscreen_isomalt
0.0
vioscreen_joules
7576.35137
vioscreen_juice_servings
0.018000000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
0.687972604
vioscreen_legumes
0.935917852
vioscreen_leucine
6.433752942999999
vioscreen_line_gi
379.6511558
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
22883.338359999998
vioscreen_lycopene
13918.08904
vioscreen_lysine
5.014903949
vioscreen_m_egg
0.582219163
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.024630136
vioscreen_m_meat
0.131917812
vioscreen_m_mpf
1.378410946
vioscreen_m_nutsd
3.4560001739999997
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
2.490849409
vioscreen_magnes
598.9303082
vioscreen_maltitol
0.0
vioscreen_maltose
4.9223836819999995
vioscreen_mangan
8.676986569
vioscreen_mannitol
0.536931453
vioscreen_methhis3
5.271479358000001
vioscreen_methion
1.296876672
vioscreen_mfa141
0.00660274
vioscreen_mfa161
0.8063561840000001
vioscreen_mfa181
35.22296393
vioscreen_mfa201
0.580438358
vioscreen_mfa221
0.259561638
vioscreen_mfatot
37.2950396
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
18.95
vioscreen_nccglbr
113.7072881
vioscreen_nccglgr
79.5315229
vioscreen_niacin
23.02553778
vioscreen_niacineq
40.26553671
vioscreen_nitrogen
15.31183514
vioscreen_non_fried_fish_servings
2.14404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.998547865
vioscreen_oxalic
868.739726
vioscreen_oxalicm
876.6684932000001
vioscreen_pantothe
5.474027116
vioscreen_pectins
10.39408243
vioscreen_pfa182
18.47728623
vioscreen_pfa183
1.385780815
vioscreen_pfa184
0.053753427
vioscreen_pfa204
0.079041097
vioscreen_pfa205
0.16216439
vioscreen_pfa225
0.060712327999999996
vioscreen_pfa226
0.33624656399999997
vioscreen_pfatot
20.76600091
vioscreen_phenylal
4.176493271
vioscreen_phosphor
1500.294863
vioscreen_phytic
1725.4506850000002
vioscreen_pinitol
0.269041129
vioscreen_potass
5057.551027
vioscreen_procdate
10/28/15
vioscreen_proline
4.534877328
vioscreen_protanim
16.58046607
vioscreen_protein
91.04438142
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
74.46443707
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
352.0
vioscreen_retinol
112.03249140000001
vioscreen_rgrain
1.240137053
vioscreen_ribofla
1.946328694
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.48797
vioscreen_satoco
0.014931506
vioscreen_selenium
77.46597282
vioscreen_serine
4.623205399
vioscreen_sfa100
0.064630137
vioscreen_sfa120
0.150657549
vioscreen_sfa140
0.561835595
vioscreen_sfa160
11.04372525
vioscreen_sfa170
0.071890405
vioscreen_sfa180
4.124410718
vioscreen_sfa200
0.295205459
vioscreen_sfa220
0.67460277
vioscreen_sfa40
0.089123284
vioscreen_sfa60
0.03819178
vioscreen_sfa80
0.03153425
vioscreen_sfatot
17.40443868
vioscreen_sodium
5070.189384
vioscreen_sorbitol
0.395589039
vioscreen_srvid
19998.0
vioscreen_starch
58.01736944
vioscreen_started
6/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.14906892
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
0.7461096359999999
vioscreen_tfa161t
0.014767123
vioscreen_tfa181t
1.4529589509999998
vioscreen_tfa182t
0.38400001
vioscreen_tgrain
1.3958629869999999
vioscreen_thiamin
1.3588218380000001
vioscreen_threonin
3.5204382489999997
vioscreen_time
16.0
vioscreen_totaltfa
1.86079436
vioscreen_totcla
0.02550685
vioscreen_totfolat
687.4436216
vioscreen_totsugar
68.77603275
vioscreen_tryptoph
1.035424637
vioscreen_tyrosine
2.887999652
vioscreen_user_id
19998.0
vioscreen_v_drkgr
1.749534126
vioscreen_v_orange
0.90306848
vioscreen_v_other
2.5544931909999997
vioscreen_v_potato
0.071287672
vioscreen_v_starcy
0.265369865
vioscreen_v_tomato
1.041068466
vioscreen_v_total
6.584849235
vioscreen_valine
4.285753224
vioscreen_veg5_day
13.1
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
12.9
vioscreen_visit
1.0
vioscreen_vita_iu
44932.38356
vioscreen_vita_rae
2339.973801
vioscreen_vita_re
4567.915068
vioscreen_vitb12
2.115862953
vioscreen_vitb6
2.572301076
vioscreen_vitc
263.5940925
vioscreen_vitd
6.25526006
vioscreen_vitd2
0.28084929999999997
vioscreen_vitd3
5.974410718
vioscreen_vitd_iu
250.21040240000002
vioscreen_vite_iu
28.28646725
vioscreen_vitk
992.6571918
vioscreen_water
4148.423288
vioscreen_weight
Not provided
vioscreen_wgrain
0.15572602800000002
vioscreen_whole_grain_servings
0.15299000000000001
vioscreen_xylitol
0.041835618
vioscreen_zinc
12.66772795
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)