American Gut Project; 10317.000023970
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632707
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:30Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023970
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
40s
age years
48.0
age_corrected
48.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23970
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1967.0
bmi
20.18
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-03-16
collection month
March
collection season
Spring
collection time
11:30
collection_timestamp
2015-03-16 11:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Mideast
elevation
127.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
3fb12300480050c19aff66924d4f198d9057b1ce60f26f5f42e725b003ab3fba3674fae46315d6f449700b64ded9ee350029857b392df108e481701bac4c7b6d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past 6 months
last_travel
Month
latitude
42.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-73.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000023970
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
d92925431de0c710
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.237068511
vioscreen_a_cal
25.73301316
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
15.22942396
vioscreen_addsugar
75.58074165
vioscreen_adsugtot
62.20011237
vioscreen_age
215.0
vioscreen_alanine
3.036383976
vioscreen_alcohol
3.493342319
vioscreen_alcohol_servings
0.23706999999999998
vioscreen_alphacar
266.3099957
vioscreen_alphtoce
29.60145013
vioscreen_alphtoco
23.52010916
vioscreen_arginine
4.221671327
vioscreen_ash
18.44649374
vioscreen_aspartam
0.0
vioscreen_aspartic
6.520630886
vioscreen_avcarb
249.76823629999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
4960.747603
vioscreen_betacryp
43.70920644
vioscreen_betaine
72.18983840000001
vioscreen_betatoco
1.027534297
vioscreen_biochana
0.0024657529999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
86.10054581
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.65674
vioscreen_calcium_servings
3.5598099999999997
vioscreen_calories
2393.0477739999997
vioscreen_carbo
272.7730094
vioscreen_cholest
171.5317637
vioscreen_choline
244.0956122
vioscreen_clac9t11
0.101013696
vioscreen_clat10c12
0.019808219
vioscreen_copper
1.627068339
vioscreen_coumest
0.007041096
vioscreen_cystine
0.8025205009999999
vioscreen_d_cheese
0.800958921
vioscreen_d_milk
0.55306848
vioscreen_d_tot_soym
1.656739619
vioscreen_d_total
1.656739619
vioscreen_d_yogurt
0.284821915
vioscreen_daidzein
3.131725573
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.430356378
vioscreen_discfat_oil
59.25087757
vioscreen_discfat_sol
38.27805544
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.006
vioscreen_f_citmlb
0.11243834800000001
vioscreen_f_nj_citmlb
0.10717807900000001
vioscreen_f_nj_other
2.856822225
vioscreen_f_nj_total
2.9640273839999995
vioscreen_f_other
2.856822225
vioscreen_f_total
2.969287778
vioscreen_fat
119.8389983
vioscreen_fiber
22.69323363
vioscreen_fibh2o
5.669917193
vioscreen_fibinso
17.06057631
vioscreen_finished
3/16/15
vioscreen_fish_servings
1.38865
vioscreen_fol_deqv
655.9498716
vioscreen_fol_nat
243.2134846
vioscreen_fol_syn
242.84888700000002
vioscreen_formontn
0.0030136990000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
5.9
vioscreen_fructose
31.31671393
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
4.674219753
vioscreen_g_total
5.177178203
vioscreen_g_whl
0.502931527
vioscreen_galactos
0.5201369610000001
vioscreen_gammtoco
17.06049069
vioscreen_gender
false
vioscreen_genistn
4.994575396
vioscreen_glac
116.33076840000001
vioscreen_gltc
123.96919950000002
vioscreen_glucose
28.19915186
vioscreen_glutamic
13.09268381
vioscreen_glycine
2.61356151
vioscreen_glycitn
0.819232847
vioscreen_grams
2986.89863
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
16.1
vioscreen_hei2010_fatty_acids
6.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
4.8
vioscreen_hei2010_protien_foods
3.9
vioscreen_hei2010_refined_grains
9.4
vioscreen_hei2010_score
71.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.7
vioscreen_hei2010_veg
3.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
2.6
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
7.8
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.7
vioscreen_hei_score
66.0
vioscreen_hei_sodium
5.4
vioscreen_hei_sol_fat_alc_add_sug
15.9
vioscreen_hei_veg
3.0
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
1.803424825
vioscreen_inositol
0.031972602999999995
vioscreen_iron
13.59586232
vioscreen_isoleuc
3.0212880589999997
vioscreen_isomalt
0.0
vioscreen_joules
10012.50685
vioscreen_juice_servings
0.010579999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
12.84652049
vioscreen_legumes
0.0062191780000000006
vioscreen_leucine
5.509945219
vioscreen_line_gi
622.2543664
vioscreen_low_fat_dairy_serving
0.37455
vioscreen_lutzeax
9067.502054999999
vioscreen_lycopene
365.9265411
vioscreen_lysine
4.341753732
vioscreen_m_egg
0.16769862800000002
vioscreen_m_fish_hi
0.423178059
vioscreen_m_fish_lo
0.37071232200000004
vioscreen_m_frank
0.018273973
vioscreen_m_meat
0.351123256
vioscreen_m_mpf
1.896027364
vioscreen_m_nutsd
2.483068513
vioscreen_m_organ
0.0
vioscreen_m_poult
0.7327670999999999
vioscreen_m_soy
0.122904101
vioscreen_magnes
356.7348245
vioscreen_maltitol
0.0
vioscreen_maltose
4.254000562
vioscreen_mangan
3.7078355760000004
vioscreen_mannitol
0.74326013
vioscreen_methhis3
6.760081336
vioscreen_methion
1.4443563380000002
vioscreen_mfa141
0.081561645
vioscreen_mfa161
1.181123331
vioscreen_mfa181
36.54583423
vioscreen_mfa201
0.37575345
vioscreen_mfa221
0.07350685400000001
vioscreen_mfatot
38.65317851
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
20.30241198
vioscreen_nccglbr
210.3852312
vioscreen_nccglgr
147.1747967
vioscreen_niacin
19.96369729
vioscreen_niacineq
32.64202697
vioscreen_nitrogen
11.14471252
vioscreen_non_fried_fish_servings
1.38865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7308219180000002
vioscreen_oxalic
443.08694349999996
vioscreen_oxalicm
464.2841182
vioscreen_pantothe
5.17328834
vioscreen_pectins
3.73353422
vioscreen_pfa182
33.68295163
vioscreen_pfa183
1.495369856
vioscreen_pfa184
0.017123286
vioscreen_pfa204
0.069178087
vioscreen_pfa205
0.063260274
vioscreen_pfa225
0.028547945
vioscreen_pfa226
0.127178077
vioscreen_pfatot
35.56911922
vioscreen_phenylal
3.209890705
vioscreen_phosphor
1268.299486
vioscreen_phytic
1231.229709
vioscreen_pinitol
0.019671234
vioscreen_potass
2747.361473
vioscreen_procdate
10/28/15
vioscreen_proline
4.806000508
vioscreen_protanim
36.03095837
vioscreen_protein
67.71832727
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.68218643
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
524.0
vioscreen_retinol
398.6334332
vioscreen_rgrain
2.205369923
vioscreen_ribofla
1.907616351
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.17956
vioscreen_satoco
7.150027424
vioscreen_selenium
116.1016053
vioscreen_serine
3.3933152289999997
vioscreen_sfa100
0.852054711
vioscreen_sfa120
2.123561577
vioscreen_sfa140
3.488959158
vioscreen_sfa160
18.51265919
vioscreen_sfa170
0.12282193300000001
vioscreen_sfa180
8.888109348
vioscreen_sfa200
0.304602761
vioscreen_sfa220
0.37531508399999997
vioscreen_sfa40
0.923863074
vioscreen_sfa60
0.48435606200000003
vioscreen_sfa80
0.452328826
vioscreen_sfatot
37.02432577
vioscreen_sodium
3343.440411
vioscreen_sorbitol
1.39506861
vioscreen_srvid
18317.0
vioscreen_starch
92.88305865
vioscreen_started
3/16/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
58.02245826
vioscreen_sweet_servings
2.28219
vioscreen_tagatose
6.789753451
vioscreen_tfa161t
0.049013697
vioscreen_tfa181t
1.245780799
vioscreen_tfa182t
0.7005479370000001
vioscreen_tgrain
5.643178109
vioscreen_thiamin
1.3703288880000002
vioscreen_threonin
2.48849295
vioscreen_time
50.0
vioscreen_totaltfa
2.01800002
vioscreen_totcla
0.12120546300000001
vioscreen_totfolat
486.0620291
vioscreen_totsugar
134.3845034
vioscreen_tryptoph
0.7616164120000001
vioscreen_tyrosine
2.534000094
vioscreen_user_id
18317.0
vioscreen_v_drkgr
0.45778085399999996
vioscreen_v_orange
0.036547946
vioscreen_v_other
0.222547954
vioscreen_v_potato
0.807452058
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.033260275
vioscreen_v_total
1.557534247
vioscreen_valine
3.5803289539999996
vioscreen_veg5_day
1.8
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
3.1
vioscreen_visit
1.0
vioscreen_vita_iu
9854.653425
vioscreen_vita_rae
824.9455479
vioscreen_vita_re
1251.2580480000001
vioscreen_vitb12
4.3747130510000005
vioscreen_vitb6
2.057424551
vioscreen_vitc
66.7461098
vioscreen_vitd
5.699698336
vioscreen_vitd2
0.374164404
vioscreen_vitd3
5.325561858
vioscreen_vitd_iu
227.98793340000003
vioscreen_vite_iu
37.44208316
vioscreen_vitk
399.0898116
vioscreen_water
2521.789212
vioscreen_weight
Not provided
vioscreen_wgrain
3.4378080189999998
vioscreen_whole_grain_servings
0.50293
vioscreen_xylitol
0.03764384
vioscreen_zinc
10.27197199
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
56.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)