10317.000026611; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633168
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026611
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
26611
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
19.37
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-24
collection month
April
collection season
Spring
collection time
16:00
collection_timestamp
2015-04-24 16:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
178.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
06071a2686bc36fa1a4ccaf2806d69d1f618824c994db21a0ba37f7a15e4d1fe14cac3839e14abeaccdc24301323bd90e25879101bd554142cebeb08b4bc70a7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-87.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026611
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
771aced382ac6636
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.999726429
vioscreen_addsugar
19.68076707
vioscreen_adsugtot
19.43564319
vioscreen_age
215.0
vioscreen_alanine
2.5184110459999998
vioscreen_alcohol
0.0000822
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
2570.4462329999997
vioscreen_alphtoce
25.63101456
vioscreen_alphtoco
23.96249197
vioscreen_arginine
5.457424551
vioscreen_ash
19.83915347
vioscreen_aspartam
10.70342466
vioscreen_aspartic
6.771671661
vioscreen_avcarb
151.9023438
vioscreen_bcodeid
Not provided
vioscreen_betacar
30131.26027
vioscreen_betacryp
189.9082192
vioscreen_betaine
61.17816781
vioscreen_betatoco
0.944109522
vioscreen_biochana
0.012821917
vioscreen_bmi
Not provided
vioscreen_caffeine
49.45353703
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.00375
vioscreen_calcium_servings
2.80515
vioscreen_calories
1579.324658
vioscreen_carbo
200.12861730000003
vioscreen_cholest
0.9356164379999999
vioscreen_choline
276.8931935
vioscreen_clac9t11
0.002136986
vioscreen_clat10c12
0.008630137
vioscreen_copper
2.326958978
vioscreen_coumest
0.007890411
vioscreen_cystine
0.7223561740000001
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.003753425
vioscreen_d_tot_soym
0.003753425
vioscreen_d_total
0.003753425
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.352246679
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.260547878
vioscreen_discfat_oil
43.8904939
vioscreen_discfat_sol
3.006356017
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00230137
vioscreen_f_citmlb
2.094520715
vioscreen_f_nj_citmlb
2.044767197
vioscreen_f_nj_other
1.04293146
vioscreen_f_nj_total
3.087698657
vioscreen_f_other
1.04293146
vioscreen_f_total
3.137452175
vioscreen_fat
75.80898438
vioscreen_fiber
48.22689962
vioscreen_fibh2o
7.69487706
vioscreen_fibinso
40.75813891
vioscreen_finished
4/24/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
775.4840753
vioscreen_fol_nat
773.9057363
vioscreen_fol_syn
0.92786305
vioscreen_formontn
0.009452055
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.1
vioscreen_frtsumm
6.3
vioscreen_fructose
34.28248876
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.049452052999999996
vioscreen_g_total
0.323041106
vioscreen_g_whl
0.27358904300000003
vioscreen_galactos
0.14827397
vioscreen_gammtoco
12.77567022
vioscreen_gender
false
vioscreen_genistn
1.462876579
vioscreen_glac
43.77424551
vioscreen_gltc
53.07344285
vioscreen_glucose
34.90353435
vioscreen_glutamic
11.59279484
vioscreen_glycine
2.9803560439999996
vioscreen_glycitn
0.418191779
vioscreen_grams
3124.726712
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.4
vioscreen_hei_score
74.6
vioscreen_hei_sodium
4.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
1.35106845
vioscreen_inositol
0.36369863
vioscreen_iron
14.09175407
vioscreen_isoleuc
2.011451868
vioscreen_isomalt
0.0
vioscreen_joules
6607.893836
vioscreen_juice_servings
0.09945
vioscreen_lactitol
0.0
vioscreen_lactose
0.07021918099999999
vioscreen_legumes
0.20967123
vioscreen_leucine
3.563972536
vioscreen_line_gi
392.775
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
39373.40274
vioscreen_lycopene
5742.754452
vioscreen_lysine
2.431753498
vioscreen_m_egg
0.000328767
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
8.71079436
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.09038355599999999
vioscreen_magnes
547.3735445
vioscreen_maltitol
0.0
vioscreen_maltose
0.752958867
vioscreen_mangan
7.143917888
vioscreen_mannitol
0.6808493
vioscreen_methhis3
0.004027397
vioscreen_methion
0.725041136
vioscreen_mfa141
0.00090411
vioscreen_mfa161
0.134821926
vioscreen_mfa181
33.69959065
vioscreen_mfa201
0.685671203
vioscreen_mfa221
0.06838355900000001
vioscreen_mfatot
34.63559236
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
23.96249197
vioscreen_nccglbr
104.51999140000001
vioscreen_nccglgr
73.1059985
vioscreen_niacin
24.09613923
vioscreen_niacineq
35.04468911
vioscreen_nitrogen
10.60912283
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.9728218809999999
vioscreen_oxalic
720.2532534
vioscreen_oxalicm
813.2785959
vioscreen_pantothe
4.47402812
vioscreen_pectins
11.87753505
vioscreen_pfa182
21.63589068
vioscreen_pfa183
0.9688218209999999
vioscreen_pfa184
0.002
vioscreen_pfa204
0.0040547940000000005
vioscreen_pfa205
0.002
vioscreen_pfa225
0.0
vioscreen_pfa226
0.0
vioscreen_pfatot
22.63843911
vioscreen_phenylal
2.620109663
vioscreen_phosphor
1120.037329
vioscreen_phytic
1069.633562
vioscreen_pinitol
0.008191781
vioscreen_potass
4635.828082
vioscreen_procdate
10/28/15
vioscreen_proline
2.9002190580000002
vioscreen_protanim
0.055068494
vioscreen_protein
61.32482342
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
61.26972924
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
464.0
vioscreen_retinol
0.5215342479999999
vioscreen_rgrain
0.094054789
vioscreen_ribofla
1.238164531
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
7.18345
vioscreen_satoco
0.0
vioscreen_selenium
90.42583476
vioscreen_serine
2.9993973410000003
vioscreen_sfa100
0.017068493
vioscreen_sfa120
0.194301365
vioscreen_sfa140
0.291013681
vioscreen_sfa160
8.192548025
vioscreen_sfa170
0.00509589
vioscreen_sfa180
2.706684938
vioscreen_sfa200
0.5878081860000001
vioscreen_sfa220
1.313506829
vioscreen_sfa40
0.0030410959999999996
vioscreen_sfa60
0.00090411
vioscreen_sfa80
0.013260273999999999
vioscreen_sfatot
13.90257652
vioscreen_sodium
2385.907705
vioscreen_sorbitol
0.26301367800000003
vioscreen_srvid
18582.0
vioscreen_starch
25.7061082
vioscreen_started
4/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.26600225
vioscreen_sweet_servings
0.023790000000000002
vioscreen_tagatose
0.105369861
vioscreen_tfa161t
0.000109589
vioscreen_tfa181t
0.055260274000000005
vioscreen_tfa182t
0.016136986000000002
vioscreen_tgrain
0.309753418
vioscreen_thiamin
1.3456985259999998
vioscreen_threonin
1.850027424
vioscreen_time
17.0
vioscreen_totaltfa
0.090246572
vioscreen_totcla
0.010821917
vioscreen_totfolat
774.8335616
vioscreen_totsugar
102.9729238
vioscreen_tryptoph
0.6601369779999999
vioscreen_tyrosine
1.820136919
vioscreen_user_id
18582.0
vioscreen_v_drkgr
3.4347395389999997
vioscreen_v_orange
0.5296712379999999
vioscreen_v_other
3.480959038
vioscreen_v_potato
0.005479451999999999
vioscreen_v_starcy
0.296191782
vioscreen_v_tomato
1.061616495
vioscreen_v_total
8.808657962
vioscreen_valine
2.370520521
vioscreen_veg5_day
13.6
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
17.6
vioscreen_visit
1.0
vioscreen_vita_iu
52521.55616
vioscreen_vita_rae
2626.477568
vioscreen_vita_re
5252.4325340000005
vioscreen_vitb12
0.006712329
vioscreen_vitb6
2.766082513
vioscreen_vitc
327.57405819999997
vioscreen_vitd
0.020136987
vioscreen_vitd2
0.0
vioscreen_vitd3
0.020136987
vioscreen_vitd_iu
0.8054794940000001
vioscreen_vite_iu
35.75419253
vioscreen_vitk
1936.5378420000002
vioscreen_water
2771.146404
vioscreen_weight
Not provided
vioscreen_wgrain
0.215698639
vioscreen_whole_grain_servings
0.27359
vioscreen_xylitol
0.12635618199999998
vioscreen_zinc
8.791671126
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)