American Gut Project; 10317.000022655
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632551
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022655
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
Not provided
age years
Not provided
age_corrected
Not provided
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22655
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1957.0
bmi
19.57
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2014-12-28
collection month
December
collection season
Winter
collection time
12:35
collection_timestamp
2014-12-28 12:35
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
22.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
17e7165481e555863720e721e9992921ad4908b2c9378cf1847ac73a318b324021d4f8350ecf47bf47ffc337e03271a74fc5de2373914e6c8198e89dc6fae855
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-118.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022655
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f9ececf9ec4f4eae
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.9017808890000001
vioscreen_a_cal
108.54377140000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.5628218980000002
vioscreen_addsugar
8.406767043
vioscreen_adsugtot
7.09479345
vioscreen_age
214.0
vioscreen_alanine
2.5207399130000003
vioscreen_alcohol
13.83569804
vioscreen_alcohol_servings
0.9017799999999999
vioscreen_alphacar
1297.9720029999999
vioscreen_alphtoce
14.39293397
vioscreen_alphtoco
13.67569563
vioscreen_arginine
3.09810975
vioscreen_ash
16.293427599999998
vioscreen_aspartam
15.97526086
vioscreen_aspartic
4.931178096
vioscreen_avcarb
67.06014555
vioscreen_bcodeid
Not provided
vioscreen_betacar
12797.15479
vioscreen_betacryp
85.46412671
vioscreen_betaine
53.31141909
vioscreen_betatoco
0.265890419
vioscreen_biochana
0.004493151
vioscreen_bmi
Not provided
vioscreen_caffeine
108.6790882
vioscreen_calcium
true
vioscreen_calcium_avg
428.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
0.3531
vioscreen_calcium_servings
1.6953200000000002
vioscreen_calories
1469.7941779999999
vioscreen_carbo
86.16542701
vioscreen_cholest
435.7865154
vioscreen_choline
419.76361299999996
vioscreen_clac9t11
0.148493142
vioscreen_clat10c12
0.029397267
vioscreen_copper
1.02336986
vioscreen_coumest
0.07134246799999999
vioscreen_cystine
0.68591781
vioscreen_d_cheese
0.274547943
vioscreen_d_milk
0.07854794
vioscreen_d_tot_soym
0.35309590399999996
vioscreen_d_total
0.35309590399999996
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.342410968
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.971150772
vioscreen_discfat_oil
40.30292969
vioscreen_discfat_sol
42.93267872
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000328767
vioscreen_f_citmlb
0.008602739
vioscreen_f_nj_citmlb
0.0017260270000000002
vioscreen_f_nj_other
0.655013662
vioscreen_f_nj_total
0.656739703
vioscreen_f_other
0.655013662
vioscreen_f_total
0.663616442
vioscreen_fat
97.50222603
vioscreen_fiber
19.03427601
vioscreen_fibh2o
4.882054661000001
vioscreen_fibinso
14.26301504
vioscreen_finished
12/28/14
vioscreen_fish_servings
2.84154
vioscreen_fol_deqv
348.6924229
vioscreen_fol_nat
315.5151327
vioscreen_fol_syn
19.50967198
vioscreen_formontn
0.00109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.3
vioscreen_fructose
9.229042032
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.7750411359999999
vioscreen_g_total
1.206164384
vioscreen_g_whl
0.431150672
vioscreen_galactos
0.076931507
vioscreen_gammtoco
5.831698149
vioscreen_gender
false
vioscreen_genistn
0.44191781700000005
vioscreen_glac
25.76835402
vioscreen_gltc
29.43493151
vioscreen_glucose
9.222136531
vioscreen_glutamic
8.21065724
vioscreen_glycine
2.103863107
vioscreen_glycitn
0.065068493
vioscreen_grams
2427.9861300000002
vioscreen_hei2010_dairy
1.8
vioscreen_hei2010_empty_calories
14.1
vioscreen_hei2010_fatty_acids
5.6
vioscreen_hei2010_fruit
2.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.8
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
51.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
1.25336981
vioscreen_inositol
0.097534253
vioscreen_iron
8.193067744
vioscreen_isoleuc
2.228602914
vioscreen_isomalt
0.0
vioscreen_joules
6149.619863
vioscreen_juice_servings
0.01375
vioscreen_lactitol
0.0
vioscreen_lactose
0.8533151290000001
vioscreen_legumes
0.013369862
vioscreen_leucine
3.719150993
vioscreen_line_gi
142.3879816
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
12906.763009999999
vioscreen_lycopene
3256.321575
vioscreen_lysine
3.4002471510000003
vioscreen_m_egg
1.578328841
vioscreen_m_fish_hi
0.622493127
vioscreen_m_fish_lo
0.996767143
vioscreen_m_frank
0.018273973
vioscreen_m_meat
0.40750682299999996
vioscreen_m_mpf
2.391205586
vioscreen_m_nutsd
1.115041069
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.27852055800000003
vioscreen_m_soy
0.012301369
vioscreen_magnes
228.31466180000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.581863194
vioscreen_mangan
2.695588747
vioscreen_mannitol
0.35010955
vioscreen_methhis3
7.981013886
vioscreen_methion
1.159972559
vioscreen_mfa141
0.043753423
vioscreen_mfa161
1.483890063
vioscreen_mfa181
42.27232984
vioscreen_mfa201
0.437972521
vioscreen_mfa221
0.08397261199999999
vioscreen_mfatot
44.46849583
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
13.66095623
vioscreen_nccglbr
52.02495184
vioscreen_nccglgr
36.39174604
vioscreen_niacin
10.83569871
vioscreen_niacineq
20.2377515
vioscreen_nitrogen
8.029971773
vioscreen_non_fried_fish_servings
2.84154
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.581780755
vioscreen_oxalic
281.17517119999997
vioscreen_oxalicm
293.55059930000004
vioscreen_pantothe
4.45610987
vioscreen_pectins
4.238493619
vioscreen_pfa182
13.30408016
vioscreen_pfa183
1.2621094590000002
vioscreen_pfa184
0.018328767
vioscreen_pfa204
0.165890419
vioscreen_pfa205
0.08128767099999999
vioscreen_pfa225
0.029232877
vioscreen_pfa226
0.191232885
vioscreen_pfatot
15.13246736
vioscreen_phenylal
2.184301256
vioscreen_phosphor
797.2766267000001
vioscreen_phytic
401.9800942
vioscreen_pinitol
0.00109589
vioscreen_potass
2186.4477739999998
vioscreen_procdate
10/28/15
vioscreen_proline
2.374712717
vioscreen_protanim
31.28918022
vioscreen_protein
49.37734375
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.08895816
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
668.0
vioscreen_retinol
504.80928939999995
vioscreen_rgrain
0.6943562129999999
vioscreen_ribofla
1.313534337
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.844
vioscreen_satoco
0.032328768
vioscreen_selenium
78.56151006
vioscreen_serine
2.492301209
vioscreen_sfa100
0.798876702
vioscreen_sfa120
0.854794521
vioscreen_sfa140
2.73076707
vioscreen_sfa160
17.09353328
vioscreen_sfa170
0.202438334
vioscreen_sfa180
6.5301369860000005
vioscreen_sfa200
0.26463016899999997
vioscreen_sfa220
0.23671231199999998
vioscreen_sfa40
0.9943287470000001
vioscreen_sfa60
0.605424646
vioscreen_sfa80
0.370438375
vioscreen_sfatot
30.90469018
vioscreen_sodium
3107.22911
vioscreen_sorbitol
0.411862977
vioscreen_srvid
16651.0
vioscreen_starch
25.8187393
vioscreen_started
12/28/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.841644371
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
0.235315067
vioscreen_tfa161t
0.027835616
vioscreen_tfa181t
1.549369917
vioscreen_tfa182t
0.24723287100000002
vioscreen_tgrain
1.380136819
vioscreen_thiamin
0.67693147
vioscreen_threonin
1.9788216369999998
vioscreen_time
26.0
vioscreen_totaltfa
1.832082085
vioscreen_totcla
0.178273951
vioscreen_totfolat
335.0245933
vioscreen_totsugar
28.61517551
vioscreen_tryptoph
0.565068493
vioscreen_tyrosine
1.7137810690000002
vioscreen_user_id
16651.0
vioscreen_v_drkgr
1.336465747
vioscreen_v_orange
0.40282195600000004
vioscreen_v_other
1.243232957
vioscreen_v_potato
0.06246575099999999
vioscreen_v_starcy
0.052082192
vioscreen_v_tomato
0.26200001300000003
vioscreen_v_total
3.359205774
vioscreen_valine
2.532521036
vioscreen_veg5_day
6.7
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.7
vioscreen_visit
1.0
vioscreen_vita_iu
24163.4411
vioscreen_vita_rae
1628.884075
vioscreen_vita_re
2752.956507
vioscreen_vitb12
3.4132876039999998
vioscreen_vitb6
1.4159450580000001
vioscreen_vitc
119.2354131
vioscreen_vitd
6.493069751
vioscreen_vitd2
0.0
vioscreen_vitd3
6.493069751
vioscreen_vitd_iu
259.72279
vioscreen_vite_iu
20.40956229
vioscreen_vitk
634.6497860000001
vioscreen_water
2176.426199
vioscreen_weight
Not provided
vioscreen_wgrain
0.6858082390000001
vioscreen_whole_grain_servings
0.43115
vioscreen_xylitol
0.035698632
vioscreen_zinc
5.551835068
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
51.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)