American Gut Project; 10317.000023340
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633870
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T22:47:47Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023340
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23340
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
21.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/11/2015
collection month
August
collection season
Summer
collection time
21:50
collection_timestamp
2015-08-11 21:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
206.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c621bd2a9cb3a1167cc4c714142daeb69133ede0a7d69dd70f2fe98619663b6fc7312c7378f95779d0b06118741efc8dd6f81f1163e61c50f0c07140bd488b78
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-80.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023340
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NC
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
a17c7e5be8aeb2c2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.538465735
vioscreen_a_cal
55.83610873
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.897452242000001
vioscreen_addsugar
34.95498448
vioscreen_adsugtot
30.20622325
vioscreen_age
215.0
vioscreen_alanine
3.964794587
vioscreen_alcohol
7.7357809820000005
vioscreen_alcohol_servings
0.53847
vioscreen_alphacar
920.9456336000001
vioscreen_alphtoce
10.40964456
vioscreen_alphtoco
8.910930811
vioscreen_arginine
4.442466757
vioscreen_ash
19.4241639
vioscreen_aspartam
0.0
vioscreen_aspartic
7.971891052999999
vioscreen_avcarb
140.06290669999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
7990.944520999999
vioscreen_betacryp
95.71854666
vioscreen_betaine
75.71516481
vioscreen_betatoco
0.1971233
vioscreen_biochana
0.01019178
vioscreen_bmi
Not provided
vioscreen_caffeine
153.0877247
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
2.8281099999999997
vioscreen_calcium_servings
4.2751
vioscreen_calories
1662.2203769999999
vioscreen_carbo
157.4032855
vioscreen_cholest
550.5875427999999
vioscreen_choline
584.7646832
vioscreen_clac9t11
0.166027414
vioscreen_clat10c12
0.030849313
vioscreen_copper
1.574328781
vioscreen_coumest
0.04147945
vioscreen_cystine
1.056547985
vioscreen_d_cheese
0.16780821899999998
vioscreen_d_milk
2.068191988
vioscreen_d_tot_soym
2.8281096160000003
vioscreen_d_total
2.8281096160000003
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
7.234960269
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.6872603739999996
vioscreen_discfat_oil
16.22394317
vioscreen_discfat_sol
43.86112479
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002958904
vioscreen_f_citmlb
0.699808199
vioscreen_f_nj_citmlb
0.697178086
vioscreen_f_nj_other
0.595725992
vioscreen_f_nj_total
1.292958968
vioscreen_f_other
0.595725992
vioscreen_f_total
1.295589081
vioscreen_fat
76.48980094
vioscreen_fiber
17.31208128
vioscreen_fibh2o
4.374026447
vioscreen_fibinso
12.96887441
vioscreen_finished
6/27/15
vioscreen_fish_servings
1.34962
vioscreen_fol_deqv
439.3901113
vioscreen_fol_nat
338.5685146
vioscreen_fol_syn
59.28617295
vioscreen_formontn
0.00230137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
12.0322493
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.620438333
vioscreen_g_total
1.6001643769999998
vioscreen_g_whl
0.9797260440000001
vioscreen_galactos
1.00356161
vioscreen_gammtoco
8.7610686
vioscreen_gender
false
vioscreen_genistn
8.811399026
vioscreen_glac
52.99718001
vioscreen_gltc
58.20591289
vioscreen_glucose
14.9160571
vioscreen_glutamic
15.04879334
vioscreen_glycine
3.098355897
vioscreen_glycitn
1.300493214
vioscreen_grams
3747.631164
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.4
vioscreen_hei2010_fatty_acids
1.1
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.1
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
64.8
vioscreen_hei_sodium
2.6
vioscreen_hei_sol_fat_alc_add_sug
10.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
2.247123321
vioscreen_inositol
0.101205476
vioscreen_iron
11.76290133
vioscreen_isoleuc
3.970656972
vioscreen_isomalt
0.0
vioscreen_joules
6954.7315069999995
vioscreen_juice_servings
0.00532
vioscreen_lactitol
0.0
vioscreen_lactose
35.02249304
vioscreen_legumes
0.11769862800000001
vioscreen_leucine
6.859863281
vioscreen_line_gi
302.1928724
vioscreen_low_fat_dairy_serving
0.6323
vioscreen_lutzeax
9156.689041
vioscreen_lycopene
1838.7410960000002
vioscreen_lysine
6.0828499570000005
vioscreen_m_egg
2.070383568
vioscreen_m_fish_hi
0.44090409
vioscreen_m_fish_lo
0.328136998
vioscreen_m_frank
0.138520552
vioscreen_m_meat
1.172821965
vioscreen_m_mpf
2.476109335
vioscreen_m_nutsd
0.551808229
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.23783561
vioscreen_m_soy
1.0272602240000002
vioscreen_magnes
360.540839
vioscreen_maltitol
0.0
vioscreen_maltose
1.29723285
vioscreen_mangan
3.68600004
vioscreen_mannitol
0.167753434
vioscreen_methhis3
8.845506475
vioscreen_methion
1.979780976
vioscreen_mfa141
0.065041095
vioscreen_mfa161
0.997561604
vioscreen_mfa181
24.4037484
vioscreen_mfa201
0.252493161
vioscreen_mfa221
0.07082192400000001
vioscreen_mfatot
25.89997325
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
8.488574219
vioscreen_nccglbr
96.70717038
vioscreen_nccglgr
67.64460081
vioscreen_niacin
14.37041283
vioscreen_niacineq
29.98951199
vioscreen_nitrogen
13.31613736
vioscreen_non_fried_fish_servings
1.34962
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9160545869999999
vioscreen_oxalic
483.66190070000005
vioscreen_oxalicm
498.0267551
vioscreen_pantothe
6.761315416
vioscreen_pectins
3.0890410960000003
vioscreen_pfa182
11.22216529
vioscreen_pfa183
1.664465834
vioscreen_pfa184
0.015808219
vioscreen_pfa204
0.211890422
vioscreen_pfa205
0.05947945
vioscreen_pfa225
0.022739727
vioscreen_pfa226
0.153890406
vioscreen_pfatot
13.42961526
vioscreen_phenylal
3.9655066089999997
vioscreen_phosphor
1479.26661
vioscreen_phytic
559.7016267000001
vioscreen_pinitol
0.044958904
vioscreen_potass
3291.0095890000002
vioscreen_procdate
10/28/15
vioscreen_proline
5.47884973
vioscreen_protanim
58.87794307
vioscreen_protein
82.63807256
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.75000268
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
356.0
vioscreen_retinol
855.8113014
vioscreen_rgrain
0.896465814
vioscreen_ribofla
2.666219298
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.0703799999999999
vioscreen_satoco
0.93860273
vioscreen_selenium
115.2486408
vioscreen_serine
4.492794507
vioscreen_sfa100
0.786246522
vioscreen_sfa120
1.051643852
vioscreen_sfa140
3.1282467360000004
vioscreen_sfa160
15.31690657
vioscreen_sfa170
0.118410973
vioscreen_sfa180
6.382629896
vioscreen_sfa200
0.122849315
vioscreen_sfa220
0.13123287
vioscreen_sfa40
0.86983559
vioscreen_sfa60
0.642958884
vioscreen_sfa80
0.558739733
vioscreen_sfatot
29.30970141
vioscreen_sodium
2844.823973
vioscreen_sorbitol
0.686630124
vioscreen_srvid
19993.0
vioscreen_starch
32.61654805
vioscreen_started
6/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
33.67465753
vioscreen_sweet_servings
0.32329
vioscreen_tagatose
4.5544112530000005
vioscreen_tfa161t
0.031041098
vioscreen_tfa181t
1.569123234
vioscreen_tfa182t
0.332575383
vioscreen_tgrain
1.9138355830000002
vioscreen_thiamin
1.209041146
vioscreen_threonin
3.428986515
vioscreen_time
22.0
vioscreen_totaltfa
2.068465727
vioscreen_totcla
0.197835614
vioscreen_totfolat
397.8547517
vioscreen_totsugar
99.06028468
vioscreen_tryptoph
0.9378904579999999
vioscreen_tyrosine
3.257973031
vioscreen_user_id
19993.0
vioscreen_v_drkgr
0.8126848609999999
vioscreen_v_orange
0.178328757
vioscreen_v_other
0.431095865
vioscreen_v_potato
0.050602738
vioscreen_v_starcy
0.219890417
vioscreen_v_tomato
0.196438348
vioscreen_v_total
1.889013672
vioscreen_valine
4.746877007
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.8
vioscreen_visit
1.0
vioscreen_vita_iu
17019.53562
vioscreen_vita_rae
1564.0839039999998
vioscreen_vita_re
2272.3589039999997
vioscreen_vitb12
8.506219900000001
vioscreen_vitb6
1.582027237
vioscreen_vitc
108.36706979999998
vioscreen_vitd
11.25334305
vioscreen_vitd2
0.049698627999999995
vioscreen_vitd3
11.20364472
vioscreen_vitd_iu
450.1337222
vioscreen_vite_iu
13.58071356
vioscreen_vitk
362.09790239999995
vioscreen_water
3426.361986
vioscreen_weight
Not provided
vioscreen_wgrain
1.017342513
vioscreen_whole_grain_servings
0.9797299999999999
vioscreen_xylitol
0.02512329
vioscreen_zinc
11.28586259
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)