American Gut Project; 10317.000021334
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632455
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:51Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021334
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21334
antibiotic_history
Not provided
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1957.0
bmi
25.02
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-30
collection month
January
collection season
Winter
collection time
11:20
collection_timestamp
2015-01-30 11:20
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
138.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Daily
fungal_overgrowth
Not provided
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
af383107ebc5cc64704766e5ba500f7659d8deb6816241583109597d90c74a1815b90b9c7b3f7b52224381b17fafc45cc84d77a4e368e480b696a208d9a5bbc1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.1
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Yes
longitude
-77.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Not provided
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000021334
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
66d22cae5f61ff60
teethbrushing_frequency
Daily
thyroid
Not provided
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000438356
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.3763003
vioscreen_addsugar
65.02512307
vioscreen_adsugtot
58.46471533
vioscreen_age
215.0
vioscreen_alanine
3.1889314
vioscreen_alcohol
0.083561644
vioscreen_alcohol_servings
0.00044
vioscreen_alphacar
1027.311901
vioscreen_alphtoce
10.81635542
vioscreen_alphtoco
9.210627809
vioscreen_arginine
3.9117254389999996
vioscreen_ash
16.74706764
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
6.292247699
vioscreen_avcarb
191.4548159
vioscreen_bcodeid
Not provided
vioscreen_betacar
4325.62226
vioscreen_betacryp
75.74789705
vioscreen_betaine
119.0005886
vioscreen_betatoco
0.355041044
vioscreen_biochana
0.015452056
vioscreen_bmi
Not provided
vioscreen_caffeine
57.53312286
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.24767
vioscreen_calcium_servings
2.54715
vioscreen_calories
1681.791952
vioscreen_carbo
212.9688998
vioscreen_cholest
179.0888485
vioscreen_choline
273.2175942
vioscreen_clac9t11
0.073095886
vioscreen_clat10c12
0.014246576
vioscreen_copper
1.263863509
vioscreen_coumest
0.02120548
vioscreen_cystine
0.8213973370000001
vioscreen_d_cheese
0.41950687799999997
vioscreen_d_milk
0.800958921
vioscreen_d_tot_soym
1.2476713
vioscreen_d_total
1.2476713
vioscreen_d_yogurt
0.016438356
vioscreen_daidzein
1.9051506980000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.889862813
vioscreen_discfat_oil
20.397590700000002
vioscreen_discfat_sol
31.81022314
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.8433150620000001
vioscreen_f_nj_citmlb
0.7853698729999999
vioscreen_f_nj_other
0.655315117
vioscreen_f_nj_total
1.440685032
vioscreen_f_other
0.6885480070000001
vioscreen_f_total
1.531890618
vioscreen_fat
67.06778682
vioscreen_fiber
21.39265839
vioscreen_fibh2o
5.473697694
vioscreen_fibinso
15.91466048
vioscreen_finished
1/30/15
vioscreen_fish_servings
2.8921200000000002
vioscreen_fol_deqv
540.7724743
vioscreen_fol_nat
239.51331340000002
vioscreen_fol_syn
177.1176263
vioscreen_formontn
0.001808219
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
2.1
vioscreen_frtsumm
3.1
vioscreen_fructose
18.02539731
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.4252053460000003
vioscreen_g_total
4.907863
vioscreen_g_whl
1.4826574869999998
vioscreen_galactos
0.199780796
vioscreen_gammtoco
13.36205587
vioscreen_gender
false
vioscreen_genistn
2.35345275
vioscreen_glac
85.29021297
vioscreen_gltc
93.81347389
vioscreen_glucose
18.03479506
vioscreen_glutamic
13.23339442
vioscreen_glycine
2.831534273
vioscreen_glycitn
0.555698719
vioscreen_grams
2248.036473
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
12.0
vioscreen_hei2010_fatty_acids
5.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.1
vioscreen_hei2010_score
69.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.9
vioscreen_hei_drk_g_org_veg_leg
4.3
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.5
vioscreen_hei_score
71.7
vioscreen_hei_sodium
1.0
vioscreen_hei_sol_fat_alc_add_sug
12.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.8173699369999998
vioscreen_inositol
0.14742463
vioscreen_iron
13.91536681
vioscreen_isoleuc
3.0197258939999996
vioscreen_isomalt
0.0
vioscreen_joules
7036.617808
vioscreen_juice_servings
0.18233
vioscreen_lactitol
0.0
vioscreen_lactose
11.79416471
vioscreen_legumes
0.120164385
vioscreen_leucine
5.188959158
vioscreen_line_gi
416.97452910000004
vioscreen_low_fat_dairy_serving
0.7944899999999999
vioscreen_lutzeax
2461.538356
vioscreen_lycopene
8091.924658
vioscreen_lysine
4.523615087
vioscreen_m_egg
0.189999996
vioscreen_m_fish_hi
0.7729041529999999
vioscreen_m_fish_lo
0.876493104
vioscreen_m_frank
0.28419179
vioscreen_m_meat
0.595178097
vioscreen_m_mpf
3.6416162780000003
vioscreen_m_nutsd
1.146274013
vioscreen_m_organ
0.0
vioscreen_m_poult
1.112849322
vioscreen_m_soy
0.34934251299999997
vioscreen_magnes
284.8282534
vioscreen_maltitol
0.0
vioscreen_maltose
2.4786303380000003
vioscreen_mangan
3.91852024
vioscreen_mannitol
0.31131501899999997
vioscreen_methhis3
12.59635595
vioscreen_methion
1.5089863819999998
vioscreen_mfa141
0.054082202
vioscreen_mfa161
0.85830145
vioscreen_mfa181
23.33011023
vioscreen_mfa201
0.343808213
vioscreen_mfa221
0.125424654
vioscreen_mfatot
24.94112265
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.129038688
vioscreen_nccglbr
160.8438784
vioscreen_nccglgr
112.5278574
vioscreen_niacin
20.03761772
vioscreen_niacineq
33.30512896
vioscreen_nitrogen
11.21262976
vioscreen_non_fried_fish_servings
2.8921200000000002
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.986630458
vioscreen_oxalic
195.00181930000002
vioscreen_oxalicm
196.522988
vioscreen_pantothe
4.161670925
vioscreen_pectins
3.53353422
vioscreen_pfa182
12.96361435
vioscreen_pfa183
1.5586847169999998
vioscreen_pfa184
0.029123287999999997
vioscreen_pfa204
0.104739725
vioscreen_pfa205
0.11857535
vioscreen_pfa225
0.04698630000000001
vioscreen_pfa226
0.233808209
vioscreen_pfatot
15.14169788
vioscreen_phenylal
2.993233291
vioscreen_phosphor
1150.751712
vioscreen_phytic
626.6164384
vioscreen_pinitol
0.017369862
vioscreen_potass
2629.142295
vioscreen_procdate
10/28/15
vioscreen_proline
4.1632053319999995
vioscreen_protanim
41.92260542
vioscreen_protein
68.73244863
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.81063249
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
585.0
vioscreen_retinol
380.5604452
vioscreen_rgrain
3.53643849
vioscreen_ribofla
1.584301591
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.18523
vioscreen_satoco
0.181315069
vioscreen_selenium
101.92646620000001
vioscreen_serine
3.120849609
vioscreen_sfa100
0.46032873700000004
vioscreen_sfa120
1.6532054330000001
vioscreen_sfa140
1.977561804
vioscreen_sfa160
10.52685079
vioscreen_sfa170
0.075041105
vioscreen_sfa180
5.360822118
vioscreen_sfa200
0.162082191
vioscreen_sfa220
0.21145205600000003
vioscreen_sfa40
0.390383535
vioscreen_sfa60
0.19646577199999998
vioscreen_sfa80
0.306767127
vioscreen_sfatot
21.64709707
vioscreen_sodium
3172.566781
vioscreen_sorbitol
0.220547945
vioscreen_srvid
17025.0
vioscreen_starch
72.16293343
vioscreen_started
1/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
50.48854345
vioscreen_sweet_servings
2.11572
vioscreen_tagatose
2.407780728
vioscreen_tfa161t
0.024000001
vioscreen_tfa181t
2.060137354
vioscreen_tfa182t
0.396246547
vioscreen_tgrain
5.076137093
vioscreen_thiamin
1.3672053919999998
vioscreen_threonin
2.597753572
vioscreen_time
58.0
vioscreen_totaltfa
2.543232957
vioscreen_totcla
0.08791781900000001
vioscreen_totfolat
416.63077910000004
vioscreen_totsugar
102.0354559
vioscreen_tryptoph
0.796383458
vioscreen_tyrosine
2.3614522019999997
vioscreen_user_id
17025.0
vioscreen_v_drkgr
0.248356169
vioscreen_v_orange
0.21005479
vioscreen_v_other
0.5395890329999999
vioscreen_v_potato
0.202904103
vioscreen_v_starcy
0.077863009
vioscreen_v_tomato
0.614246567
vioscreen_v_total
1.893013899
vioscreen_valine
3.415397581
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
3.8
vioscreen_visit
1.0
vioscreen_vita_iu
9396.461643999999
vioscreen_vita_rae
786.9906678
vioscreen_vita_re
1193.419863
vioscreen_vitb12
4.455780782
vioscreen_vitb6
1.7784657940000002
vioscreen_vitc
114.07696920000001
vioscreen_vitd
6.606329597
vioscreen_vitd2
0.001342466
vioscreen_vitd3
6.60506943
vioscreen_vitd_iu
264.2531839
vioscreen_vite_iu
13.79808299
vioscreen_vitk
143.6328446
vioscreen_water
1921.730993
vioscreen_weight
Not provided
vioscreen_wgrain
1.5396986030000002
vioscreen_whole_grain_servings
1.48266
vioscreen_xylitol
0.037561652
vioscreen_zinc
10.19583623
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily