American Gut Project; 10317.000022924
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633045
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022924
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
22924
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1950.0
bmi
18.9
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Not provided
collection date
12/09/2014
collection month
December
collection season
Winter
collection time
08:10
collection_timestamp
2014-12-09 08:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
118.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
853c343a4ae3e8fcb6fb77d1517ae476fe10f84b298e6b2fd4a3c00259d1c9bca81aa4084887444748259561e51d3b09bb2a2201d24baee7efee963f9a6e4bf0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022924
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
236a708535673842
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.096712295
vioscreen_addsugar
9.896849583
vioscreen_adsugtot
9.336630458
vioscreen_age
215.0
vioscreen_alanine
2.9809316139999997
vioscreen_alcohol
0.819150658
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
3133.117466
vioscreen_alphtoce
14.27273785
vioscreen_alphtoco
13.63131689
vioscreen_arginine
3.5503836019999997
vioscreen_ash
15.8796166
vioscreen_aspartam
0.0
vioscreen_aspartic
5.439534059
vioscreen_avcarb
62.45767872
vioscreen_bcodeid
Not provided
vioscreen_betacar
19023.8274
vioscreen_betacryp
67.98843643
vioscreen_betaine
46.94235338
vioscreen_betatoco
0.22424655
vioscreen_biochana
0.013424658
vioscreen_bmi
Not provided
vioscreen_caffeine
47.97079409
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.01726
vioscreen_calcium_servings
1.4804899999999999
vioscreen_calories
1433.041438
vioscreen_carbo
86.10661387
vioscreen_cholest
197.1378425
vioscreen_choline
251.12384419999998
vioscreen_clac9t11
0.173999995
vioscreen_clat10c12
0.039534247
vioscreen_copper
1.067369853
vioscreen_coumest
0.000438356
vioscreen_cystine
0.64961644
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.017260273
vioscreen_d_tot_soym
0.017260273
vioscreen_d_total
0.017260273
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.022109591
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.001945182
vioscreen_discfat_oil
44.91887307
vioscreen_discfat_sol
32.892166100000004
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.139095881
vioscreen_f_nj_citmlb
0.12745204599999999
vioscreen_f_nj_other
0.943506863
vioscreen_f_nj_total
1.070958887
vioscreen_f_other
0.943506863
vioscreen_f_total
1.082602723
vioscreen_fat
101.60867940000001
vioscreen_fiber
23.6496174
vioscreen_fibh2o
5.542574781
vioscreen_fibinso
18.21463105
vioscreen_finished
1/14/15
vioscreen_fish_servings
2.5253799999999997
vioscreen_fol_deqv
323.7527397
vioscreen_fol_nat
322.0003211
vioscreen_fol_syn
1.030356128
vioscreen_formontn
0.002904109
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.2
vioscreen_fructose
9.754273464
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.093643836
vioscreen_g_total
0.23616439600000003
vioscreen_g_whl
0.142520549
vioscreen_galactos
0.08956165099999999
vioscreen_gammtoco
5.409096412
vioscreen_gender
false
vioscreen_genistn
0.036191784
vioscreen_glac
18.97890491
vioscreen_gltc
23.52912297
vioscreen_glucose
9.436247191
vioscreen_glutamic
8.31356151
vioscreen_glycine
2.769479245
vioscreen_glycitn
0.005534247
vioscreen_grams
2760.340925
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
17.3
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
4.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
64.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.7
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
58.1
vioscreen_hei_sodium
0.1
vioscreen_hei_sol_fat_alc_add_sug
17.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
1.5241371469999998
vioscreen_inositol
0.064986305
vioscreen_iron
8.058410477
vioscreen_isoleuc
2.46616445
vioscreen_isomalt
0.0
vioscreen_joules
5995.8486299999995
vioscreen_juice_servings
0.02323
vioscreen_lactitol
0.0
vioscreen_lactose
0.305095892
vioscreen_legumes
0.0
vioscreen_leucine
3.914767163
vioscreen_line_gi
142.6921447
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
18302.94795
vioscreen_lycopene
431.1332192
vioscreen_lysine
4.109561617
vioscreen_m_egg
0.012328767
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.217342471
vioscreen_m_frank
0.06394520599999999
vioscreen_m_meat
1.327315155
vioscreen_m_mpf
4.912082285
vioscreen_m_nutsd
0.640767137
vioscreen_m_organ
0.0
vioscreen_m_poult
2.081616378
vioscreen_m_soy
0.000219178
vioscreen_magnes
238.5609161
vioscreen_maltitol
0.0
vioscreen_maltose
1.412438296
vioscreen_mangan
2.9117261080000003
vioscreen_mannitol
0.329726002
vioscreen_methhis3
17.92920591
vioscreen_methion
1.262465636
vioscreen_mfa141
0.052547946
vioscreen_mfa161
1.948986315
vioscreen_mfa181
45.24381956
vioscreen_mfa201
0.535890386
vioscreen_mfa221
0.261808212
vioscreen_mfatot
48.1950503
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
13.63131689
vioscreen_nccglbr
48.2369756
vioscreen_nccglgr
33.7385167
vioscreen_niacin
16.21950717
vioscreen_niacineq
26.25931346
vioscreen_nitrogen
8.86619154
vioscreen_non_fried_fish_servings
2.5253799999999997
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.345671353
vioscreen_oxalic
305.3351455
vioscreen_oxalicm
319.66352739999996
vioscreen_pantothe
3.918959025
vioscreen_pectins
6.248877622
vioscreen_pfa182
13.0129321
vioscreen_pfa183
1.6781368730000001
vioscreen_pfa184
0.053342464000000006
vioscreen_pfa204
0.12758904
vioscreen_pfa205
0.177342475
vioscreen_pfa225
0.077095889
vioscreen_pfa226
0.36019178399999996
vioscreen_pfatot
15.5963011
vioscreen_phenylal
2.166822292
vioscreen_phosphor
683.7600599
vioscreen_phytic
315.1261558
vioscreen_pinitol
0.000219178
vioscreen_potass
2551.4315070000002
vioscreen_procdate
10/28/15
vioscreen_proline
2.344657668
vioscreen_protanim
38.44285103
vioscreen_protein
54.83653146
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.39463158
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
618.0
vioscreen_retinol
251.6860017
vioscreen_rgrain
0.07136986099999999
vioscreen_ribofla
0.9004658740000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.1274
vioscreen_satoco
0.0
vioscreen_selenium
53.06627783
vioscreen_serine
2.194137113
vioscreen_sfa100
0.8080821420000001
vioscreen_sfa120
0.8592053559999999
vioscreen_sfa140
2.7612604010000004
vioscreen_sfa160
17.28597362
vioscreen_sfa170
0.21073974199999998
vioscreen_sfa180
6.24884886
vioscreen_sfa200
0.258356173
vioscreen_sfa220
0.170986301
vioscreen_sfa40
1.01090414
vioscreen_sfa60
0.62575345
vioscreen_sfa80
0.37471229899999997
vioscreen_sfatot
30.77660531
vioscreen_sodium
2853.430308
vioscreen_sorbitol
0.344493145
vioscreen_srvid
16895.0
vioscreen_starch
14.48443788
vioscreen_started
1/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.74728703
vioscreen_sweet_servings
0.09487999999999999
vioscreen_tagatose
0.420246574
vioscreen_tfa161t
0.030027395
vioscreen_tfa181t
1.4259178680000002
vioscreen_tfa182t
0.25369862600000004
vioscreen_tgrain
0.213835625
vioscreen_thiamin
0.630438441
vioscreen_threonin
2.2138905980000003
vioscreen_time
22.0
vioscreen_totaltfa
1.71975315
vioscreen_totcla
0.213150693
vioscreen_totfolat
323.03067210000006
vioscreen_totsugar
34.86605576
vioscreen_tryptoph
0.60394517
vioscreen_tyrosine
1.762575416
vioscreen_user_id
16895.0
vioscreen_v_drkgr
1.287315055
vioscreen_v_orange
0.802109643
vioscreen_v_other
1.862657354
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.100328764
vioscreen_v_tomato
0.068219177
vioscreen_v_total
4.120630552
vioscreen_valine
2.64046564
vioscreen_veg5_day
8.7
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
35211.55616
vioscreen_vita_rae
1970.388527
vioscreen_vita_re
3689.084932
vioscreen_vitb12
2.643835784
vioscreen_vitb6
1.727451941
vioscreen_vitc
132.5991759
vioscreen_vitd
6.070081737000001
vioscreen_vitd2
0.0
vioscreen_vitd3
6.070081737000001
vioscreen_vitd_iu
242.80326949999997
vioscreen_vite_iu
20.34024642
vioscreen_vitk
863.1755992999999
vioscreen_water
2505.250514
vioscreen_weight
Not provided
vioscreen_wgrain
0.142465753
vioscreen_whole_grain_servings
0.14252
vioscreen_xylitol
0.030712331000000002
vioscreen_zinc
6.605369087000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)