American Gut Project; 10317.000022633
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633859
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-10T05:20:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022633
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22633
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
21.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-21
collection month
January
collection season
Winter
collection time
12:00
collection_timestamp
2015-01-21 12:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
5.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b3f97b2419adc83fd91d29e612d308cc8428c403450829a18a796f97cc0622e50036d343e9589ec4d6fb5dba4eb3817e4f311622b96fb17ef4686fe479c47c14
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.8
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022633
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
97832fe4e1e86edd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.9095890409999999
vioscreen_a_cal
111.9848459
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.96909581
vioscreen_addsugar
31.017941999999998
vioscreen_adsugtot
28.80860445
vioscreen_age
215.0
vioscreen_alanine
3.716328995
vioscreen_alcohol
14.05734295
vioscreen_alcohol_servings
0.90959
vioscreen_alphacar
1049.293065
vioscreen_alphtoce
21.29726027
vioscreen_alphtoco
20.06153414
vioscreen_arginine
5.095834893999999
vioscreen_ash
25.20909675
vioscreen_aspartam
0.0
vioscreen_aspartic
7.5563576889999995
vioscreen_avcarb
144.7463399
vioscreen_bcodeid
Not provided
vioscreen_betacar
32889.47123
vioscreen_betacryp
378.6074914
vioscreen_betaine
179.6976884
vioscreen_betatoco
0.429369825
vioscreen_biochana
0.026410957000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
249.3443065
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.60252
vioscreen_calcium_servings
3.82611
vioscreen_calories
1590.576199
vioscreen_carbo
184.9598031
vioscreen_cholest
275.02078339999997
vioscreen_choline
477.3212757
vioscreen_clac9t11
0.040136988
vioscreen_clat10c12
0.008986301
vioscreen_copper
1.855753358
vioscreen_coumest
0.115945205
vioscreen_cystine
0.910849292
vioscreen_d_cheese
0.013315068999999999
vioscreen_d_milk
0.215041111
vioscreen_d_tot_soym
0.602520543
vioscreen_d_total
0.602520543
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.22397260300000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.8763290609999999
vioscreen_discfat_oil
26.14956122
vioscreen_discfat_sol
16.35347951
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
1.180273939
vioscreen_f_nj_citmlb
1.1630684629999999
vioscreen_f_nj_other
0.975890528
vioscreen_f_nj_total
2.1389313999999997
vioscreen_f_other
0.975890528
vioscreen_f_total
2.1561095359999998
vioscreen_fat
61.37997646
vioscreen_fiber
40.20660584
vioscreen_fibh2o
8.045972014
vioscreen_fibinso
32.2294039
vioscreen_finished
1/22/15
vioscreen_fish_servings
5.6425
vioscreen_fol_deqv
803.4351027
vioscreen_fol_nat
773.2135274
vioscreen_fol_syn
17.75654698
vioscreen_formontn
0.01079452
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.3
vioscreen_fructose
25.66022581
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.8292876779999999
vioscreen_g_total
0.9653424820000001
vioscreen_g_whl
0.136054794
vioscreen_galactos
0.677178035
vioscreen_gammtoco
10.45531357
vioscreen_gender
false
vioscreen_genistn
0.143095889
vioscreen_glac
42.021066999999995
vioscreen_gltc
48.14898866
vioscreen_glucose
24.609779
vioscreen_glutamic
12.21945099
vioscreen_glycine
3.280576105
vioscreen_glycitn
0.02569863
vioscreen_grams
4489.664726
vioscreen_hei2010_dairy
2.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.8
vioscreen_hei_score
71.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
1.755205546
vioscreen_inositol
0.214630127
vioscreen_iron
16.26780956
vioscreen_isoleuc
3.1354793180000002
vioscreen_isomalt
0.0
vioscreen_joules
6654.964384000001
vioscreen_juice_servings
0.03433
vioscreen_lactitol
0.0
vioscreen_lactose
7.782163688
vioscreen_legumes
0.116328775
vioscreen_leucine
5.216026996
vioscreen_line_gi
283.3313784
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
54295.89589
vioscreen_lycopene
4206.265753
vioscreen_lysine
4.9604114269999995
vioscreen_m_egg
1.070137003
vioscreen_m_fish_hi
2.178548066
vioscreen_m_fish_lo
1.037342479
vioscreen_m_frank
0.0
vioscreen_m_meat
0.037698631
vioscreen_m_mpf
3.261835804
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.008630137
vioscreen_m_soy
0.005342466
vioscreen_magnes
550.3172089
vioscreen_maltitol
0.0
vioscreen_maltose
0.6323013510000001
vioscreen_mangan
6.1898631470000005
vioscreen_mannitol
0.894082182
vioscreen_methhis3
6.415698577000001
vioscreen_methion
1.535287852
vioscreen_mfa141
0.01350685
vioscreen_mfa161
0.7475890279999999
vioscreen_mfa181
22.76164384
vioscreen_mfa201
0.52931506
vioscreen_mfa221
0.41665753899999997
vioscreen_mfatot
24.54862479
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
20.06153414
vioscreen_nccglbr
100.0479452
vioscreen_nccglgr
69.98551477
vioscreen_niacin
21.62378264
vioscreen_niacineq
36.41701627
vioscreen_nitrogen
12.10876766
vioscreen_non_fried_fish_servings
5.6425
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.7531229930000003
vioscreen_oxalic
1750.2433219999998
vioscreen_oxalicm
1812.203425
vioscreen_pantothe
6.022932497
vioscreen_pectins
9.835671955
vioscreen_pfa182
12.93011157
vioscreen_pfa183
1.723479639
vioscreen_pfa184
0.084547947
vioscreen_pfa204
0.138904112
vioscreen_pfa205
0.260794548
vioscreen_pfa225
0.094273983
vioscreen_pfa226
0.590410917
vioscreen_pfatot
15.8980549
vioscreen_phenylal
3.204026648
vioscreen_phosphor
1203.410959
vioscreen_phytic
534.3083904
vioscreen_pinitol
0.002356164
vioscreen_potass
5115.12363
vioscreen_procdate
10/28/15
vioscreen_proline
3.568027611
vioscreen_protanim
37.05751017
vioscreen_protein
74.43965111
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.37641267
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
600.0
vioscreen_retinol
218.7531892
vioscreen_rgrain
0.77583568
vioscreen_ribofla
2.249068587
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.73592
vioscreen_satoco
0.0
vioscreen_selenium
109.29533390000002
vioscreen_serine
3.491232676
vioscreen_sfa100
0.23336984300000002
vioscreen_sfa120
0.5320548279999999
vioscreen_sfa140
1.030767153
vioscreen_sfa160
9.000164544
vioscreen_sfa170
0.070246574
vioscreen_sfa180
3.353314627
vioscreen_sfa200
0.22747947
vioscreen_sfa220
0.375671219
vioscreen_sfa40
0.257698623
vioscreen_sfa60
0.153205474
vioscreen_sfa80
0.127452056
vioscreen_sfatot
15.60208289
vioscreen_sodium
3634.6787670000003
vioscreen_sorbitol
0.7191232340000001
vioscreen_srvid
16960.0
vioscreen_starch
23.20219392
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.06188998
vioscreen_sweet_servings
0.4274
vioscreen_tagatose
2.689452122
vioscreen_tfa161t
0.012054795
vioscreen_tfa181t
0.904602803
vioscreen_tfa182t
0.134027392
vioscreen_tgrain
0.8743836290000001
vioscreen_thiamin
1.225397397
vioscreen_threonin
2.918218576
vioscreen_time
13.0
vioscreen_totaltfa
1.052246679
vioscreen_totcla
0.049671230999999996
vioscreen_totfolat
790.9699486000001
vioscreen_totsugar
96.95997432
vioscreen_tryptoph
0.891041042
vioscreen_tyrosine
2.588027243
vioscreen_user_id
16960.0
vioscreen_v_drkgr
4.026465847
vioscreen_v_orange
0.174219189
vioscreen_v_other
3.733533885
vioscreen_v_potato
0.028054793999999997
vioscreen_v_starcy
0.013890411
vioscreen_v_tomato
0.485123266
vioscreen_v_total
8.461316085
vioscreen_valine
3.6646297089999997
vioscreen_veg5_day
13.4
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
16.8
vioscreen_visit
1.0
vioscreen_vita_iu
56734.30685
vioscreen_vita_rae
3019.040411
vioscreen_vita_re
5819.326712
vioscreen_vitb12
4.682959319
vioscreen_vitb6
2.523123294
vioscreen_vitc
301.7806935
vioscreen_vitd
11.51912323
vioscreen_vitd2
0.004164384
vioscreen_vitd3
11.51498689
vioscreen_vitd_iu
460.76492939999997
vioscreen_vite_iu
29.90333637
vioscreen_vitk
2336.259418
vioscreen_water
4150.875342
vioscreen_weight
Not provided
vioscreen_wgrain
0.09854794900000001
vioscreen_whole_grain_servings
0.13605
vioscreen_xylitol
0.10679453
vioscreen_zinc
8.004026648
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)