10317.000028417; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633958
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028417
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28417
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1975.0
bmi
28.72
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/04/2015
collection month
August
collection season
Summer
collection time
08:45
collection_timestamp
2015-08-04 08:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
Belgium
country of birth
Sri Lanka
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
Belgium
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
7705283d246823f939178b3318fa2c37a45724c55d86da6fb96aaf3b5e1b10be13cdca001888433e70d8c3d48d4c83ee28ee15a0c4c1f6aa16f75fd43dc67bfc
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
Not provided
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028417
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
8662c1351a605bf4
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.9694246479999999
vioscreen_a_cal
117.04473459999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.396931186000001
vioscreen_addsugar
41.10605736
vioscreen_adsugtot
33.10397314
vioscreen_age
215.0
vioscreen_alanine
11.41506849
vioscreen_alcohol
14.87772635
vioscreen_alcohol_servings
0.9694200000000001
vioscreen_alphacar
975.1545377
vioscreen_alphtoce
28.36981218
vioscreen_alphtoco
26.06616545
vioscreen_arginine
13.416794199999998
vioscreen_ash
42.78180918
vioscreen_aspartam
0.0
vioscreen_aspartic
20.0020548
vioscreen_avcarb
125.66870719999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
7786.660959000001
vioscreen_betacryp
80.03095569
vioscreen_betaine
111.17405819999999
vioscreen_betatoco
0.745890411
vioscreen_biochana
0.016684932
vioscreen_bmi
Not provided
vioscreen_caffeine
238.34995719999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9022700000000001
vioscreen_calcium_servings
2.86869
vioscreen_calories
3660.668151
vioscreen_carbo
150.5744007
vioscreen_cholest
627.741524
vioscreen_choline
794.9668664
vioscreen_clac9t11
0.30832877
vioscreen_clat10c12
0.103506846
vioscreen_copper
3.002931025
vioscreen_coumest
0.17819178300000002
vioscreen_cystine
2.3698357569999997
vioscreen_d_cheese
0.014794521000000001
vioscreen_d_milk
0.103671233
vioscreen_d_tot_soym
0.902274019
vioscreen_d_total
0.902274019
vioscreen_d_yogurt
0.7832603140000001
vioscreen_daidzein
0.269232888
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.144026916
vioscreen_discfat_oil
93.0364512
vioscreen_discfat_sol
76.47844071
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.090054792
vioscreen_f_nj_citmlb
0.06457534200000001
vioscreen_f_nj_other
0.369095894
vioscreen_f_nj_total
0.433671256
vioscreen_f_other
0.369095894
vioscreen_f_total
0.45915071700000004
vioscreen_fat
243.0757277
vioscreen_fiber
24.90570152
vioscreen_fibh2o
6.482630565
vioscreen_fibinso
18.48915079
vioscreen_finished
7/30/15
vioscreen_fish_servings
12.26019
vioscreen_fol_deqv
545.3807791
vioscreen_fol_nat
475.46369860000004
vioscreen_fol_syn
41.080987799999996
vioscreen_formontn
0.003479452
vioscreen_fried_fish_servings
2.77923
vioscreen_fried_food_servings
0.54977
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.9
vioscreen_fructose
12.82452242
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.794411019
vioscreen_g_total
1.794411019
vioscreen_g_whl
0.0
vioscreen_galactos
1.179123301
vioscreen_gammtoco
19.67104292
vioscreen_gender
false
vioscreen_genistn
0.19726027399999999
vioscreen_glac
36.38614084
vioscreen_gltc
40.6372592
vioscreen_glucose
15.12331443
vioscreen_glutamic
34.51753532
vioscreen_glycine
10.481724900000001
vioscreen_glycitn
0.024082192000000002
vioscreen_grams
6134.761644
vioscreen_hei2010_dairy
1.9
vioscreen_hei2010_empty_calories
18.2
vioscreen_hei2010_fatty_acids
9.5
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.5
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
3.9
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.9
vioscreen_hei_non_juice_frt
1.5
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
51.0
vioscreen_hei_sodium
0.4
vioscreen_hei_sol_fat_alc_add_sug
16.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
6.098930462999999
vioscreen_inositol
0.137150689
vioscreen_iron
19.94452189
vioscreen_isoleuc
9.112959519
vioscreen_isomalt
0.0
vioscreen_joules
15316.239730000001
vioscreen_juice_servings
0.05093
vioscreen_lactitol
0.0
vioscreen_lactose
12.82517792
vioscreen_legumes
0.014273973
vioscreen_leucine
15.857943599999999
vioscreen_line_gi
258.0565068
vioscreen_low_fat_dairy_serving
0.7832600000000001
vioscreen_lutzeax
5248.668836
vioscreen_lycopene
15101.67671
vioscreen_lysine
16.2122164
vioscreen_m_egg
0.151863015
vioscreen_m_fish_hi
2.596274013
vioscreen_m_fish_lo
4.391013618000001
vioscreen_m_frank
6.8900818710000005
vioscreen_m_meat
8.269616198
vioscreen_m_mpf
24.62238335
vioscreen_m_nutsd
4.409534193
vioscreen_m_organ
0.157917807
vioscreen_m_poult
2.318054701
vioscreen_m_soy
0.0052602740000000005
vioscreen_magnes
536.8272688
vioscreen_maltitol
0.0
vioscreen_maltose
1.142054811
vioscreen_mangan
3.5369311189999997
vioscreen_mannitol
0.714410986
vioscreen_methhis3
69.95427012
vioscreen_methion
5.113178243
vioscreen_mfa141
0.38183560299999997
vioscreen_mfa161
5.408986047000001
vioscreen_mfa181
112.1956443
vioscreen_mfa201
1.315698577
vioscreen_mfa221
0.388356164
vioscreen_mfatot
120.053125
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
26.06616545
vioscreen_nccglbr
82.94910103
vioscreen_nccglgr
58.01874465
vioscreen_niacin
59.43593215
vioscreen_niacineq
93.83092894
vioscreen_nitrogen
33.16107395
vioscreen_non_fried_fish_servings
9.480960000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.259451921
vioscreen_oxalic
331.9184289
vioscreen_oxalicm
368.4430651
vioscreen_pantothe
9.584383695
vioscreen_pectins
5.266000575
vioscreen_pfa182
34.76912457
vioscreen_pfa183
2.840520655
vioscreen_pfa184
0.096054788
vioscreen_pfa204
0.428657511
vioscreen_pfa205
0.367780795
vioscreen_pfa225
0.146712337
vioscreen_pfa226
0.812191647
vioscreen_pfatot
39.74983144
vioscreen_phenylal
8.41517752
vioscreen_phosphor
2389.603425
vioscreen_phytic
639.9994435
vioscreen_pinitol
0.000657534
vioscreen_potass
5677.4496579999995
vioscreen_procdate
10/28/15
vioscreen_proline
9.771698416
vioscreen_protanim
172.1712008
vioscreen_protein
203.6842466
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.50046554
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
249.0
vioscreen_retinol
458.47106160000004
vioscreen_rgrain
1.470027391
vioscreen_ribofla
2.867424952
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
8.676789999999999
vioscreen_satoco
0.0
vioscreen_selenium
300.3152611
vioscreen_serine
8.715972817
vioscreen_sfa100
0.259835627
vioscreen_sfa120
0.385315025
vioscreen_sfa140
3.0237809689999997
vioscreen_sfa160
41.33528735
vioscreen_sfa170
0.190931514
vioscreen_sfa180
18.13616492
vioscreen_sfa200
0.64569861
vioscreen_sfa220
0.7875068559999999
vioscreen_sfa40
0.08846575599999999
vioscreen_sfa60
0.036054794
vioscreen_sfa80
0.03271233
vioscreen_sfatot
65.48491545
vioscreen_sodium
7174.924658
vioscreen_sorbitol
0.268219182
vioscreen_srvid
20270.0
vioscreen_starch
32.93013966
vioscreen_started
7/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.02183487
vioscreen_sweet_servings
0.26093
vioscreen_tagatose
6.727123689
vioscreen_tfa161t
0.181643844
vioscreen_tfa181t
3.8835894019999997
vioscreen_tfa182t
0.615479477
vioscreen_tgrain
1.470027391
vioscreen_thiamin
2.1833425859999998
vioscreen_threonin
8.251287591
vioscreen_time
14.0
vioscreen_totaltfa
4.758164999
vioscreen_totcla
0.409698654
vioscreen_totfolat
516.5445634
vioscreen_totsugar
75.51947239
vioscreen_tryptoph
2.06076727
vioscreen_tyrosine
6.893780099999999
vioscreen_user_id
20270.0
vioscreen_v_drkgr
1.0175890779999999
vioscreen_v_orange
0.10909589
vioscreen_v_other
2.152465653
vioscreen_v_potato
0.22698631800000002
vioscreen_v_starcy
0.117671235
vioscreen_v_tomato
2.409150591
vioscreen_v_total
6.032930891
vioscreen_valine
10.24290253
vioscreen_veg5_day
10.1
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
12.1
vioscreen_visit
1.0
vioscreen_vita_iu
15386.0726
vioscreen_vita_rae
1151.327997
vioscreen_vita_re
1844.1821920000002
vioscreen_vitb12
17.70904324
vioscreen_vitb6
4.220493432
vioscreen_vitc
128.48985449999998
vioscreen_vitd
16.56794467
vioscreen_vitd2
0.006520548
vioscreen_vitd3
16.56142444
vioscreen_vitd_iu
662.7177868
vioscreen_vite_iu
38.89282427
vioscreen_vitk
327.98268410000003
vioscreen_water
5521.289041
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.038794523
vioscreen_zinc
31.43625321
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
83.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never