American Gut Project; 10317.000026580
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633455
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026580
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26580
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1972.0
bmi
21.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
05/09/2015
collection month
May
collection season
Spring
collection time
13:25
collection_timestamp
2015-05-09 13:25
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am ambidextrous
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
744.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
4366acc961a1141f87c4e1e37b70c613d32e402c13c35399eead2b1502af304cff5ca4f7281663d80b74a3e23946b4e7202ec18965022fae78b1a5df31305793
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
32.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-110.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026580
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AZ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
dd9b2c9f58a9f094
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.42435616299999995
vioscreen_a_cal
41.66953393
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.27273986
vioscreen_addsugar
16.11323309
vioscreen_adsugtot
13.35591824
vioscreen_age
215.0
vioscreen_alanine
3.094767364
vioscreen_alcohol
5.953314961
vioscreen_alcohol_servings
0.42436
vioscreen_alphacar
301.303232
vioscreen_alphtoce
20.73696222
vioscreen_alphtoco
20.19224502
vioscreen_arginine
4.03630137
vioscreen_ash
22.52838453
vioscreen_aspartam
0.0
vioscreen_aspartic
5.988027745
vioscreen_avcarb
176.1352312
vioscreen_bcodeid
Not provided
vioscreen_betacar
37897.93425
vioscreen_betacryp
150.33451409999998
vioscreen_betaine
224.3959332
vioscreen_betatoco
0.30723289600000003
vioscreen_biochana
0.0033424659999999997
vioscreen_bmi
Not provided
vioscreen_caffeine
267.7001284
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.20951
vioscreen_calcium_servings
3.5910699999999998
vioscreen_calories
1517.712671
vioscreen_carbo
219.18473889999999
vioscreen_cholest
91.70210831
vioscreen_choline
290.8628211
vioscreen_clac9t11
0.020794521
vioscreen_clat10c12
0.006082191999999999
vioscreen_copper
2.11536999
vioscreen_coumest
0.003068493
vioscreen_cystine
0.6524383539999999
vioscreen_d_cheese
0.037123286
vioscreen_d_milk
0.16706849199999999
vioscreen_d_tot_soym
0.20950685300000002
vioscreen_d_total
0.20950685300000002
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.0032054790000000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.494630119
vioscreen_discfat_oil
28.63397367
vioscreen_discfat_sol
6.883342252
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000410959
vioscreen_f_citmlb
0.754438259
vioscreen_f_nj_citmlb
0.749397257
vioscreen_f_nj_other
4.504410919
vioscreen_f_nj_total
5.2538082589999995
vioscreen_f_other
4.504410919
vioscreen_f_total
5.258849596
vioscreen_fat
53.67007706
vioscreen_fiber
43.04863014
vioscreen_fibh2o
9.708520173
vioscreen_fibinso
33.36427654
vioscreen_finished
4/26/15
vioscreen_fish_servings
0.47231000000000006
vioscreen_fol_deqv
809.275
vioscreen_fol_nat
792.2759417999999
vioscreen_fol_syn
10.00956162
vioscreen_formontn
0.003616438
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.0
vioscreen_frtsumm
10.5
vioscreen_fructose
37.50531625
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
0.944273983
vioscreen_g_total
0.944273983
vioscreen_g_whl
0.0
vioscreen_galactos
0.082547948
vioscreen_gammtoco
4.15627408
vioscreen_gender
false
vioscreen_genistn
0.006164384
vioscreen_glac
78.38078981
vioscreen_gltc
88.34706764
vioscreen_glucose
35.85896565
vioscreen_glutamic
8.96484977
vioscreen_glycine
2.9438907989999996
vioscreen_glycitn
0.0
vioscreen_grams
6332.4410960000005
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.4
vioscreen_hei_sodium
4.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.6886023119999998
vioscreen_inositol
0.11208220199999999
vioscreen_iron
15.73964309
vioscreen_isoleuc
2.482685079
vioscreen_isomalt
0.0
vioscreen_joules
6350.110959000001
vioscreen_juice_servings
0.01008
vioscreen_lactitol
0.0
vioscreen_lactose
2.700246649
vioscreen_legumes
0.0
vioscreen_leucine
4.0395347280000005
vioscreen_line_gi
379.32752569999997
vioscreen_low_fat_dairy_serving
0.12367
vioscreen_lutzeax
68727.07397
vioscreen_lycopene
1321.294692
vioscreen_lysine
3.83134264
vioscreen_m_egg
0.326767135
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.269095894
vioscreen_m_frank
0.11873972599999999
vioscreen_m_meat
0.9361096529999999
vioscreen_m_mpf
2.7836164919999997
vioscreen_m_nutsd
1.124493157
vioscreen_m_organ
0.0
vioscreen_m_poult
1.45969857
vioscreen_m_soy
0.0
vioscreen_magnes
637.8051797999999
vioscreen_maltitol
0.0
vioscreen_maltose
0.760712339
vioscreen_mangan
8.248959225
vioscreen_mannitol
0.34117807899999997
vioscreen_methhis3
11.15142471
vioscreen_methion
1.113698797
vioscreen_mfa141
0.032739726000000004
vioscreen_mfa161
0.8566301740000001
vioscreen_mfa181
25.01060574
vioscreen_mfa201
0.222630143
vioscreen_mfa221
0.065972608
vioscreen_mfatot
26.335041200000003
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
20.19224502
vioscreen_nccglbr
140.9391267
vioscreen_nccglgr
98.57411173
vioscreen_niacin
16.39126044
vioscreen_niacineq
28.01441032
vioscreen_nitrogen
9.536574941
vioscreen_non_fried_fish_servings
0.47231000000000006
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.601671193
vioscreen_oxalic
2177.1147260000002
vioscreen_oxalicm
2276.488014
vioscreen_pantothe
4.824301356
vioscreen_pectins
11.34797464
vioscreen_pfa182
9.158054633999999
vioscreen_pfa183
1.540602593
vioscreen_pfa184
0.00060274
vioscreen_pfa204
0.094356171
vioscreen_pfa205
0.015232879
vioscreen_pfa225
0.016849315
vioscreen_pfa226
0.028931507999999998
vioscreen_pfatot
10.91882157
vioscreen_phenylal
2.561205386
vioscreen_phosphor
823.8771404
vioscreen_phytic
413.7478168
vioscreen_pinitol
0.0
vioscreen_potass
5750.30411
vioscreen_procdate
10/28/15
vioscreen_proline
2.7523288669999997
vioscreen_protanim
27.16751124
vioscreen_protein
59.19177547
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.02378532
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
459.0
vioscreen_retinol
53.40764127
vioscreen_rgrain
0.048794524000000006
vioscreen_ribofla
1.937643809
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.47666
vioscreen_satoco
0.0
vioscreen_selenium
60.84490582
vioscreen_serine
2.492986475
vioscreen_sfa100
0.058109587000000004
vioscreen_sfa120
0.10093150699999999
vioscreen_sfa140
0.43134247200000003
vioscreen_sfa160
7.73509672
vioscreen_sfa170
0.057671226
vioscreen_sfa180
2.450328754
vioscreen_sfa200
0.17043836399999998
vioscreen_sfa220
0.190739734
vioscreen_sfa40
0.070986301
vioscreen_sfa60
0.031753425
vioscreen_sfa80
0.025013699
vioscreen_sfatot
11.48676691
vioscreen_sodium
2293.656336
vioscreen_sorbitol
0.562301385
vioscreen_srvid
18596.0
vioscreen_starch
45.67660531
vioscreen_started
4/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.89101563
vioscreen_sweet_servings
0.5944
vioscreen_tagatose
1.208219178
vioscreen_tfa161t
0.027095891
vioscreen_tfa181t
0.39158902100000004
vioscreen_tfa182t
0.119452061
vioscreen_tgrain
0.930986295
vioscreen_thiamin
0.942794507
vioscreen_threonin
2.27041116
vioscreen_time
14.0
vioscreen_totaltfa
0.5433698260000001
vioscreen_totcla
0.0269863
vioscreen_totfolat
802.2855308
vioscreen_totsugar
104.78872
vioscreen_tryptoph
0.701013685
vioscreen_tyrosine
1.9966027659999999
vioscreen_user_id
18596.0
vioscreen_v_drkgr
4.774575262
vioscreen_v_orange
0.0
vioscreen_v_other
1.330575352
vioscreen_v_potato
0.178876715
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.079068495
vioscreen_v_total
6.363178242999999
vioscreen_valine
2.836684972
vioscreen_veg5_day
12.1
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
12.7
vioscreen_visit
1.0
vioscreen_vita_iu
63714.08219
vioscreen_vita_rae
3230.389041
vioscreen_vita_re
6407.367123
vioscreen_vitb12
1.3299998659999999
vioscreen_vitb6
3.410273638
vioscreen_vitc
212.10954619999998
vioscreen_vitd
0.34427396200000004
vioscreen_vitd2
0.0
vioscreen_vitd3
0.34427396200000004
vioscreen_vitd_iu
13.77095847
vioscreen_vite_iu
30.10285477
vioscreen_vitk
2861.0178079999996
vioscreen_water
5977.410959000001
vioscreen_weight
Not provided
vioscreen_wgrain
0.882191781
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.09369863199999999
vioscreen_zinc
8.812629762
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Never