10317.000022166; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633005
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:12Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022166
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22166
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
22.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-26
collection month
April
collection season
Spring
collection time
09:30
collection_timestamp
2015-04-26 09:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
34.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
193.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
12192df3bcd98f8ca6e87a5aef9217c76d775920ac48be0955c31dfff903450047a5f6900faef175d7485f9c320d56e5c280944f4f4b492083b24dcf2c76356a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-27.6
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
152.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022166
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
QLD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
8735a3179e642448
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000273973
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.468712543
vioscreen_addsugar
60.71838613
vioscreen_adsugtot
41.52671233
vioscreen_age
215.0
vioscreen_alanine
3.988081924
vioscreen_alcohol
0.001835616
vioscreen_alcohol_servings
0.00027
vioscreen_alphacar
2454.905308
vioscreen_alphtoce
10.29769906
vioscreen_alphtoco
9.255643996
vioscreen_arginine
4.3981913530000005
vioscreen_ash
17.89781143
vioscreen_aspartam
0.0
vioscreen_aspartic
7.373258909
vioscreen_avcarb
176.2726455
vioscreen_bcodeid
Not provided
vioscreen_betacar
11231.46301
vioscreen_betacryp
179.9785103
vioscreen_betaine
89.98318707
vioscreen_betatoco
0.21589044
vioscreen_biochana
0.012273973999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
308.61746580000005
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.03578
vioscreen_calcium_servings
3.41647
vioscreen_calories
1576.292466
vioscreen_carbo
198.5678938
vioscreen_cholest
317.26023119999996
vioscreen_choline
417.0131849
vioscreen_clac9t11
0.052027397
vioscreen_clat10c12
0.014794523
vioscreen_copper
1.35816433
vioscreen_coumest
0.167589036
vioscreen_cystine
1.110136936
vioscreen_d_cheese
0.183041089
vioscreen_d_milk
0.46109585700000005
vioscreen_d_tot_soym
1.0357808990000001
vioscreen_d_total
1.0357808990000001
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.149260273
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.966328995
vioscreen_discfat_oil
20.18698496
vioscreen_discfat_sol
18.24542487
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.288493159
vioscreen_f_nj_citmlb
0.283452073
vioscreen_f_nj_other
1.381452085
vioscreen_f_nj_total
1.664958797
vioscreen_f_other
1.381452085
vioscreen_f_total
1.6700273909999999
vioscreen_fat
56.82117937
vioscreen_fiber
22.2959466
vioscreen_fibh2o
7.362631769
vioscreen_fibinso
14.96901354
vioscreen_finished
4/26/15
vioscreen_fish_servings
3.5646199999999997
vioscreen_fol_deqv
346.8850813
vioscreen_fol_nat
296.69982880000003
vioscreen_fol_syn
29.50794628
vioscreen_formontn
0.0017260270000000002
vioscreen_fried_fish_servings
1.19115
vioscreen_fried_food_servings
0.2137
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.3
vioscreen_fructose
18.54641214
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.4082191780000002
vioscreen_g_total
4.938932069
vioscreen_g_whl
3.530712222
vioscreen_galactos
0.7571507279999999
vioscreen_gammtoco
9.387588292
vioscreen_gender
false
vioscreen_genistn
0.104958897
vioscreen_glac
84.16337222
vioscreen_gltc
91.19606164
vioscreen_glucose
20.35975091
vioscreen_glutamic
13.39364566
vioscreen_glycine
3.4521644910000004
vioscreen_glycitn
0.01509589
vioscreen_grams
4403.516438000001
vioscreen_hei2010_dairy
5.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
87.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.0
vioscreen_hei_score
86.3
vioscreen_hei_sodium
2.2
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.114547771
vioscreen_inositol
0.067068481
vioscreen_iron
10.52413514
vioscreen_isoleuc
3.451232408
vioscreen_isomalt
0.0
vioscreen_joules
6595.204795000001
vioscreen_juice_servings
0.01014
vioscreen_lactitol
0.0
vioscreen_lactose
11.49065711
vioscreen_legumes
0.0
vioscreen_leucine
5.968136638
vioscreen_line_gi
400.4300514
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
5657.162671
vioscreen_lycopene
3160.236986
vioscreen_lysine
5.693396832
vioscreen_m_egg
0.933698597
vioscreen_m_fish_hi
0.713589018
vioscreen_m_fish_lo
1.317643842
vioscreen_m_frank
0.6420548110000001
vioscreen_m_meat
2.579479479
vioscreen_m_mpf
5.370602459
vioscreen_m_nutsd
0.028438356
vioscreen_m_organ
0.0
vioscreen_m_poult
0.117808219
vioscreen_m_soy
0.0026301370000000003
vioscreen_magnes
340.9687714
vioscreen_maltitol
0.0
vioscreen_maltose
14.34142498
vioscreen_mangan
5.569945286
vioscreen_mannitol
0.663561635
vioscreen_methhis3
19.76249197
vioscreen_methion
1.845561323
vioscreen_mfa141
0.094630139
vioscreen_mfa161
0.927616485
vioscreen_mfa181
19.19597068
vioscreen_mfa201
0.299863047
vioscreen_mfa221
0.099890429
vioscreen_mfatot
20.7693132
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.255643996
vioscreen_nccglbr
152.64848030000002
vioscreen_nccglgr
106.7584867
vioscreen_niacin
16.87476991
vioscreen_niacineq
30.33986515
vioscreen_nitrogen
12.24758669
vioscreen_non_fried_fish_servings
2.3734599999999997
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.281452169
vioscreen_oxalic
354.3103382
vioscreen_oxalicm
381.21425510000006
vioscreen_pantothe
5.447670631
vioscreen_pectins
4.071726175
vioscreen_pfa182
13.22761665
vioscreen_pfa183
1.866219131
vioscreen_pfa184
0.026301371
vioscreen_pfa204
0.13208218900000002
vioscreen_pfa205
0.11005479
vioscreen_pfa225
0.04219178
vioscreen_pfa226
0.23830137899999998
vioscreen_pfatot
15.71262709
vioscreen_phenylal
3.35361696
vioscreen_phosphor
1334.233305
vioscreen_phytic
593.0430651
vioscreen_pinitol
0.016438356
vioscreen_potass
3386.462329
vioscreen_procdate
10/28/15
vioscreen_proline
4.151670524
vioscreen_protanim
55.68874144
vioscreen_protein
75.92468964
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.23041256
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
460.0
vioscreen_retinol
390.8000856
vioscreen_rgrain
1.205698593
vioscreen_ribofla
1.8864933380000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.10082
vioscreen_satoco
0.0
vioscreen_selenium
110.38752140000001
vioscreen_serine
3.5485201060000002
vioscreen_sfa100
0.16024658
vioscreen_sfa120
0.186739715
vioscreen_sfa140
0.933753445
vioscreen_sfa160
9.004850037
vioscreen_sfa170
0.06106849
vioscreen_sfa180
3.724849502
vioscreen_sfa200
0.10849315699999999
vioscreen_sfa220
0.075999999
vioscreen_sfa40
0.199452063
vioscreen_sfa60
0.09734246199999999
vioscreen_sfa80
0.06279452099999999
vioscreen_sfatot
14.83621709
vioscreen_sodium
2769.306849
vioscreen_sorbitol
0.778575406
vioscreen_srvid
18594.0
vioscreen_starch
52.9640625
vioscreen_started
4/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.27227633
vioscreen_sweet_servings
0.13085
vioscreen_tagatose
3.378383522
vioscreen_tfa161t
0.029369861
vioscreen_tfa181t
1.221589138
vioscreen_tfa182t
0.291424686
vioscreen_tgrain
3.359123502
vioscreen_thiamin
1.115123174
vioscreen_threonin
3.123835148
vioscreen_time
57.0
vioscreen_totaltfa
1.543726088
vioscreen_totcla
0.06860274200000001
vioscreen_totfolat
326.2076841
vioscreen_totsugar
92.34818065
vioscreen_tryptoph
0.806739786
vioscreen_tyrosine
2.6181098830000002
vioscreen_user_id
18594.0
vioscreen_v_drkgr
0.483095854
vioscreen_v_orange
0.599479445
vioscreen_v_other
1.283945078
vioscreen_v_potato
0.018219178
vioscreen_v_starcy
0.074219173
vioscreen_v_tomato
0.41493149799999995
vioscreen_v_total
2.87391742
vioscreen_valine
4.04386304
vioscreen_veg5_day
6.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.7
vioscreen_visit
1.0
vioscreen_vita_iu
22216.8726
vioscreen_vita_rae
1436.5417810000001
vioscreen_vita_re
2482.285959
vioscreen_vitb12
7.150274909
vioscreen_vitb6
1.882630231
vioscreen_vitc
148.69180219999998
vioscreen_vitd
9.835753558
vioscreen_vitd2
3.126903962
vioscreen_vitd3
6.708849262
vioscreen_vitd_iu
393.4301423
vioscreen_vite_iu
13.79183701
vioscreen_vitk
241.0762414
vioscreen_water
4072.805479
vioscreen_weight
Not provided
vioscreen_wgrain
2.153424658
vioscreen_whole_grain_servings
3.53071
vioscreen_xylitol
0.032465754
vioscreen_zinc
11.773972599999999
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
85.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily