American Gut Project; 10317.000030130
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634132
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030130
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030130
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1960.0
bmi
30.7
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-08-29
collection month
August
collection season
Summer
collection time
08:30
collection_timestamp
2015-08-29 08:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
71.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
bf2f424f281334e2dc01413718bcc9ec1cd97993e267a004a8cbf9e276010069b5ef09c587847eb2e89e6988ab88ab6bf30b4f9ede91ea4a4d064f863b53c35b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030130
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b65ea45dc6339f7d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.9910136180000002
vioscreen_a_cal
237.3413955
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.56969981
vioscreen_addsugar
66.35244542
vioscreen_adsugtot
62.52490903
vioscreen_age
215.0
vioscreen_alanine
3.75013712
vioscreen_alcohol
30.418629600000003
vioscreen_alcohol_servings
1.99101
vioscreen_alphacar
1080.507192
vioscreen_alphtoce
11.77356057
vioscreen_alphtoco
10.78663113
vioscreen_arginine
3.853506595
vioscreen_ash
24.21682363
vioscreen_aspartam
0.0
vioscreen_aspartic
7.863890597999999
vioscreen_avcarb
226.6815068
vioscreen_bcodeid
Not provided
vioscreen_betacar
7696.975342
vioscreen_betacryp
242.968536
vioscreen_betaine
171.2456443
vioscreen_betatoco
0.37983565700000005
vioscreen_biochana
0.017917811000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
234.5270548
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.2846
vioscreen_calcium_servings
5.26786
vioscreen_calories
2059.517637
vioscreen_carbo
253.1612372
vioscreen_cholest
254.3149401
vioscreen_choline
438.7654966
vioscreen_clac9t11
0.088219191
vioscreen_clat10c12
0.015287671000000001
vioscreen_copper
1.302958867
vioscreen_coumest
0.094273972
vioscreen_cystine
0.94109589
vioscreen_d_cheese
0.56131504
vioscreen_d_milk
1.217753371
vioscreen_d_tot_soym
3.284602753
vioscreen_d_total
3.284602753
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
0.15230137
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.920410825
vioscreen_discfat_oil
18.10265679
vioscreen_discfat_sol
29.88764448
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001260274
vioscreen_f_citmlb
0.587013684
vioscreen_f_nj_citmlb
0.577178077
vioscreen_f_nj_other
0.9556713370000001
vioscreen_f_nj_total
1.532876545
vioscreen_f_other
0.9556713370000001
vioscreen_f_total
1.542712235
vioscreen_fat
61.15799979
vioscreen_fiber
26.4777531
vioscreen_fibh2o
6.85512294
vioscreen_fibinso
19.72167166
vioscreen_finished
8/28/15
vioscreen_fish_servings
4.19135
vioscreen_fol_deqv
492.1860017
vioscreen_fol_nat
367.6809932
vioscreen_fol_syn
73.23408605
vioscreen_formontn
0.0023287670000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
18.53928858
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.1350682919999997
vioscreen_g_total
4.570904123
vioscreen_g_whl
1.4358356630000002
vioscreen_galactos
1.96589021
vioscreen_gammtoco
8.152548427000001
vioscreen_gender
false
vioscreen_genistn
0.13342466
vioscreen_glac
97.81013485
vioscreen_gltc
106.63761770000002
vioscreen_glucose
18.67326225
vioscreen_glutamic
16.81761692
vioscreen_glycine
2.8306851319999997
vioscreen_glycitn
0.008082192
vioscreen_grams
2995.871575
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
14.6
vioscreen_hei2010_fatty_acids
2.2
vioscreen_hei2010_fruit
4.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.3
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.7
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
8.6
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.3
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
70.6
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
9.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.160548213
vioscreen_inositol
0.226547973
vioscreen_iron
12.39654725
vioscreen_isoleuc
3.8985752889999996
vioscreen_isomalt
0.0
vioscreen_joules
8617.021233
vioscreen_juice_servings
0.01962
vioscreen_lactitol
0.0
vioscreen_lactose
37.35101402
vioscreen_legumes
0.16983562100000002
vioscreen_leucine
6.896026862
vioscreen_line_gi
448.6373288
vioscreen_low_fat_dairy_serving
2.53348
vioscreen_lutzeax
6213.364384
vioscreen_lycopene
7249.293151000001
vioscreen_lysine
6.0555617239999995
vioscreen_m_egg
0.640191734
vioscreen_m_fish_hi
1.9513151819999999
vioscreen_m_fish_lo
0.437178102
vioscreen_m_frank
0.018273973
vioscreen_m_meat
0.135671234
vioscreen_m_mpf
2.542410905
vioscreen_m_nutsd
0.5529041029999999
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.003068493
vioscreen_magnes
428.3005565
vioscreen_maltitol
0.0
vioscreen_maltose
3.175260528
vioscreen_mangan
4.227945072
vioscreen_mannitol
0.40602738899999996
vioscreen_methhis3
8.494356004
vioscreen_methion
1.996410798
vioscreen_mfa141
0.065315069
vioscreen_mfa161
0.986630207
vioscreen_mfa181
19.12534247
vioscreen_mfa201
0.438904101
vioscreen_mfa221
0.357890383
vioscreen_mfatot
21.16506849
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.78663113
vioscreen_nccglbr
161.3239726
vioscreen_nccglgr
112.84293659999999
vioscreen_niacin
20.77139876
vioscreen_niacineq
35.27662671
vioscreen_nitrogen
13.57292915
vioscreen_non_fried_fish_servings
4.19135
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.0476166190000002
vioscreen_oxalic
267.5721961
vioscreen_oxalicm
273.7821704
vioscreen_pantothe
7.067808887999999
vioscreen_pectins
4.602163822
vioscreen_pfa182
10.04895856
vioscreen_pfa183
1.0784656259999998
vioscreen_pfa184
0.082000001
vioscreen_pfa204
0.110958904
vioscreen_pfa205
0.258410958
vioscreen_pfa225
0.09808219
vioscreen_pfa226
0.530958871
vioscreen_pfatot
12.30843723
vioscreen_phenylal
3.9436165589999996
vioscreen_phosphor
1762.5287670000002
vioscreen_phytic
626.1213184999999
vioscreen_pinitol
0.001945205
vioscreen_potass
4269.209247
vioscreen_procdate
10/28/15
vioscreen_proline
6.371204784
vioscreen_protanim
55.77013057
vioscreen_protein
84.37476456
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.57781197
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
167.0
vioscreen_retinol
454.0997432
vioscreen_rgrain
2.996547918
vioscreen_ribofla
2.682547959
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.5844099999999997
vioscreen_satoco
0.0
vioscreen_selenium
120.34118149999999
vioscreen_serine
4.37271277
vioscreen_sfa100
0.649945236
vioscreen_sfa120
1.08709583
vioscreen_sfa140
2.563096138
vioscreen_sfa160
11.30649213
vioscreen_sfa170
0.129424662
vioscreen_sfa180
4.572767618
vioscreen_sfa200
0.126109596
vioscreen_sfa220
0.123205483
vioscreen_sfa40
0.733780785
vioscreen_sfa60
0.420520605
vioscreen_sfa80
0.33802736899999997
vioscreen_sfatot
22.46981218
vioscreen_sodium
3673.059589
vioscreen_sorbitol
0.791999963
vioscreen_srvid
20527.0
vioscreen_starch
67.28953339
vioscreen_started
8/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
60.06915668
vioscreen_sweet_servings
0.34333
vioscreen_tagatose
11.33810868
vioscreen_tfa161t
0.044712327999999996
vioscreen_tfa181t
1.238054835
vioscreen_tfa182t
0.264493132
vioscreen_tgrain
4.561259565
vioscreen_thiamin
1.412493311
vioscreen_threonin
3.2850134439999996
vioscreen_time
25.0
vioscreen_totaltfa
1.5978353419999998
vioscreen_totcla
0.10421917
vioscreen_totfolat
440.9150257
vioscreen_totsugar
142.3104773
vioscreen_tryptoph
0.871260217
vioscreen_tyrosine
3.207890424
vioscreen_user_id
20527.0
vioscreen_v_drkgr
0.852493077
vioscreen_v_orange
0.236904113
vioscreen_v_other
1.553917955
vioscreen_v_potato
0.201424648
vioscreen_v_starcy
0.063150683
vioscreen_v_tomato
0.7744383090000001
vioscreen_v_total
3.682300474
vioscreen_valine
4.931588787
vioscreen_veg5_day
7.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.3
vioscreen_visit
1.0
vioscreen_vita_iu
15444.9274
vioscreen_vita_rae
1150.659846
vioscreen_vita_re
1847.220205
vioscreen_vitb12
6.624684958
vioscreen_vitb6
1.8931230940000001
vioscreen_vitc
195.8109375
vioscreen_vitd
13.97071249
vioscreen_vitd2
0.0
vioscreen_vitd3
13.97071249
vioscreen_vitd_iu
558.8284996
vioscreen_vite_iu
16.07211045
vioscreen_vitk
314.6148545
vioscreen_water
2554.902397
vioscreen_weight
Not provided
vioscreen_wgrain
1.5647671630000002
vioscreen_whole_grain_servings
1.43584
vioscreen_xylitol
0.072876719
vioscreen_zinc
10.96161574
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
88.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)