American Gut Project; 10317.000022050
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632980
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022050
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22050
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
1.59
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/12/2015
collection month
June
collection season
Summer
collection time
13:15
collection_timestamp
2015-06-12 13:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
46.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
Australia
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
9cd8aba7f680d81207b80fd0c945b4039cfc78203a3971173a3d9a0665eab58290391281737fc153d0909eeda608b5c492cbfd390a90a5e2da690890e9222f18
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-37.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
145.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022050
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
d5c5774d2e09015e
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.346822159
vioscreen_addsugar
51.19188784
vioscreen_adsugtot
46.75040668
vioscreen_age
215.0
vioscreen_alanine
4.05904123
vioscreen_alcohol
0.819369883
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
11871.6589
vioscreen_alphtoce
46.10337115
vioscreen_alphtoco
43.62139341
vioscreen_arginine
6.785780982
vioscreen_ash
56.83636558
vioscreen_aspartam
0.0
vioscreen_aspartic
9.685671286
vioscreen_avcarb
233.15562930000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
42455.030139999995
vioscreen_betacryp
99.51218964
vioscreen_betaine
199.26875
vioscreen_betatoco
1.06369863
vioscreen_biochana
0.076164387
vioscreen_bmi
Not provided
vioscreen_caffeine
473.6917808
vioscreen_calcium
true
vioscreen_calcium_avg
107.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
3
vioscreen_calcium_from_dairy_servings
1.53099
vioscreen_calcium_servings
3.7966300000000004
vioscreen_calories
3422.136301
vioscreen_carbo
284.32437930000003
vioscreen_cholest
121.26454409999998
vioscreen_choline
392.8323202
vioscreen_clac9t11
0.16564383300000002
vioscreen_clat10c12
0.040191786
vioscreen_copper
3.340794895
vioscreen_coumest
0.049561644
vioscreen_cystine
1.213178076
vioscreen_d_cheese
0.070438359
vioscreen_d_milk
1.4548767930000002
vioscreen_d_tot_soym
1.530986295
vioscreen_d_total
1.530986295
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.19435617100000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.85167136
vioscreen_discfat_oil
159.6883562
vioscreen_discfat_sol
34.71073951
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.27750685199999997
vioscreen_f_nj_citmlb
0.27221918
vioscreen_f_nj_other
0.20134246
vioscreen_f_nj_total
0.473561661
vioscreen_f_other
0.20134246
vioscreen_f_total
0.478849312
vioscreen_fat
228.46800090000002
vioscreen_fiber
51.16906571
vioscreen_fibh2o
9.322959252
vioscreen_fibinso
42.15215914
vioscreen_finished
6/2/15
vioscreen_fish_servings
1.46712
vioscreen_fol_deqv
845.1749143999999
vioscreen_fol_nat
705.1440924999999
vioscreen_fol_syn
82.3322667
vioscreen_formontn
0.00830137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.0
vioscreen_fructose
22.18931667
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.527314988
vioscreen_g_total
3.628383522
vioscreen_g_whl
1.101068533
vioscreen_galactos
0.251616428
vioscreen_gammtoco
20.339122699999997
vioscreen_gender
false
vioscreen_genistn
0.243369847
vioscreen_glac
75.7466235
vioscreen_gltc
88.13561644
vioscreen_glucose
21.65852151
vioscreen_glutamic
19.63652076
vioscreen_glycine
4.075397314
vioscreen_glycitn
0.04679452
vioscreen_grams
6741.190411
vioscreen_hei2010_dairy
3.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.7
vioscreen_hei2010_whole_grains
2.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
1.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.4
vioscreen_hei_non_juice_frt
1.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.6
vioscreen_hei_score
62.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
2.260657574
vioscreen_inositol
0.147753425
vioscreen_iron
19.25564533
vioscreen_isoleuc
3.569342292
vioscreen_isomalt
0.0
vioscreen_joules
14318.21644
vioscreen_juice_servings
0.010579999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
17.79408176
vioscreen_legumes
0.112684924
vioscreen_leucine
6.4863829729999996
vioscreen_line_gi
501.3578767
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
17160.998630000002
vioscreen_lycopene
26646.52329
vioscreen_lysine
4.798082326
vioscreen_m_egg
0.011260273999999999
vioscreen_m_fish_hi
0.212630139
vioscreen_m_fish_lo
0.623506896
vioscreen_m_frank
0.0
vioscreen_m_meat
0.595095909
vioscreen_m_mpf
1.4311506719999998
vioscreen_m_nutsd
8.74169855
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.009972601999999999
vioscreen_magnes
782.4916952000001
vioscreen_maltitol
0.0
vioscreen_maltose
2.6687123759999998
vioscreen_mangan
10.51049337
vioscreen_mannitol
1.140383451
vioscreen_methhis3
4.862766882
vioscreen_methion
1.549178116
vioscreen_mfa141
0.031452054
vioscreen_mfa161
1.83230131
vioscreen_mfa181
110.04945420000001
vioscreen_mfa201
1.360493114
vioscreen_mfa221
0.011369863000000001
vioscreen_mfatot
113.53814209999999
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
43.62139341
vioscreen_nccglbr
172.7115368
vioscreen_nccglgr
120.80460190000001
vioscreen_niacin
36.73805116
vioscreen_niacineq
54.07536922
vioscreen_nitrogen
15.51715004
vioscreen_non_fried_fish_servings
1.46712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
5.065972148
vioscreen_oxalic
1249.901627
vioscreen_oxalicm
1247.352568
vioscreen_pantothe
7.582164357000001
vioscreen_pectins
9.401697613
vioscreen_pfa182
49.16043985
vioscreen_pfa183
4.988191955
vioscreen_pfa184
0.004493151
vioscreen_pfa204
0.018410958
vioscreen_pfa205
0.018876713
vioscreen_pfa225
0.006876711999999999
vioscreen_pfa226
0.047780823
vioscreen_pfatot
54.29768836
vioscreen_phenylal
4.230986462
vioscreen_phosphor
1902.232021
vioscreen_phytic
1522.060788
vioscreen_pinitol
0.002
vioscreen_potass
6236.734247
vioscreen_procdate
10/28/15
vioscreen_proline
5.442985472
vioscreen_protanim
24.50797303
vioscreen_protein
91.55555437
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
67.06569456
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
415.0
vioscreen_retinol
266.8608091
vioscreen_rgrain
2.340383535
vioscreen_ribofla
2.480959038
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
7.29592
vioscreen_satoco
0.0
vioscreen_selenium
164.76791519999998
vioscreen_serine
4.659890371
vioscreen_sfa100
0.6947123909999999
vioscreen_sfa120
1.234164387
vioscreen_sfa140
2.786520428
vioscreen_sfa160
28.87336794
vioscreen_sfa170
0.157506833
vioscreen_sfa180
9.578932336
vioscreen_sfa200
1.105287651
vioscreen_sfa220
1.5672602409999998
vioscreen_sfa40
0.7430684129999999
vioscreen_sfa60
0.533671173
vioscreen_sfa80
0.479890421
vioscreen_sfatot
48.46153682
vioscreen_sodium
15553.15068
vioscreen_sorbitol
0.07632876400000001
vioscreen_srvid
18804.0
vioscreen_starch
91.0041845
vioscreen_started
6/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
50.66168664
vioscreen_sweet_servings
0.16604000000000002
vioscreen_tagatose
1.140246582
vioscreen_tfa161t
0.044273972
vioscreen_tfa181t
0.952082135
vioscreen_tfa182t
0.548246577
vioscreen_tgrain
3.4427674180000003
vioscreen_thiamin
2.023561744
vioscreen_threonin
3.5944931239999995
vioscreen_time
13.0
vioscreen_totaltfa
1.635232669
vioscreen_totcla
0.206821912
vioscreen_totfolat
787.4763699
vioscreen_totsugar
115.3727098
vioscreen_tryptoph
1.041260267
vioscreen_tyrosine
3.023643515
vioscreen_user_id
18804.0
vioscreen_v_drkgr
1.7109863280000002
vioscreen_v_orange
2.81312306
vioscreen_v_other
2.177260307
vioscreen_v_potato
0.21449315300000002
vioscreen_v_starcy
0.473260289
vioscreen_v_tomato
1.465095917
vioscreen_v_total
8.854219954
vioscreen_valine
4.255013913
vioscreen_veg5_day
15.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
17.7
vioscreen_visit
1.0
vioscreen_vita_iu
81626.67397
vioscreen_vita_rae
4303.583219
vioscreen_vita_re
8340.297945
vioscreen_vitb12
3.1923012089999996
vioscreen_vitb6
2.985369957
vioscreen_vitc
154.25985659999998
vioscreen_vitd
6.073260247
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
6.072493044
vioscreen_vitd_iu
242.9304099
vioscreen_vite_iu
65.08463185
vioscreen_vitk
781.1259418
vioscreen_water
6091.580137
vioscreen_weight
Not provided
vioscreen_wgrain
1.102383548
vioscreen_whole_grain_servings
1.10107
vioscreen_xylitol
0.065150687
vioscreen_zinc
14.11624572
vitamin_b_supplement_frequency
Not provided
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
4.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never