American Gut Project; 10317.000018400
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632410
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:40:45Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000018400
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
18400
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
25.77
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-01-15
collection month
January
collection season
Winter
collection time
08:30
collection_timestamp
2015-01-15 08:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Plains
elevation
352.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
4c5b3e25a8d22a8c4915ac01e913cef494c26d17f5c792cacf3d5fe0cc7eb6d44a47096ff1cbeb4c63aa4533e729ae1ab4f2966e195de88972c3442f1b8fc935
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
46.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-92.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000018400
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MN
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Never
survey_id
c72e6b00812bfd9f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Never
vioscreen_a_bev
0.681671226
vioscreen_a_cal
84.00964255
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.5518357369999998
vioscreen_addsugar
33.06536548
vioscreen_adsugtot
22.78980897
vioscreen_age
214.0
vioscreen_alanine
3.5398363919999998
vioscreen_alcohol
10.50925995
vioscreen_alcohol_servings
0.68167
vioscreen_alphacar
1881.090068
vioscreen_alphtoce
27.86263378
vioscreen_alphtoco
25.69761344
vioscreen_arginine
6.391725974
vioscreen_ash
19.38975278
vioscreen_aspartam
0.0
vioscreen_aspartic
8.026575208999999
vioscreen_avcarb
201.0075985
vioscreen_bcodeid
Not provided
vioscreen_betacar
10438.56644
vioscreen_betacryp
62.90572025
vioscreen_betaine
119.2871254
vioscreen_betatoco
0.9399179120000001
vioscreen_biochana
0.006109589
vioscreen_bmi
Not provided
vioscreen_caffeine
256.9117723
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.03929
vioscreen_calcium_servings
3.04915
vioscreen_calories
2391.253425
vioscreen_carbo
229.6950985
vioscreen_cholest
147.6187607
vioscreen_choline
341.4166096
vioscreen_clac9t11
0.018931505
vioscreen_clat10c12
0.014465753000000001
vioscreen_copper
2.073780802
vioscreen_coumest
0.520575369
vioscreen_cystine
1.043698664
vioscreen_d_cheese
0.001452055
vioscreen_d_milk
0.037780822
vioscreen_d_tot_soym
0.203999997
vioscreen_d_total
0.039287672
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.218109883
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.048191854
vioscreen_discfat_oil
84.26249465
vioscreen_discfat_sol
8.735041203
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.7618630609999999
vioscreen_f_nj_citmlb
0.003780822
vioscreen_f_nj_other
0.819095894
vioscreen_f_nj_total
0.822876645
vioscreen_f_other
0.819095894
vioscreen_f_total
1.580986295
vioscreen_fat
130.872089
vioscreen_fiber
28.69010595
vioscreen_fibh2o
8.4230141
vioscreen_fibinso
20.37835643
vioscreen_finished
12/5/14
vioscreen_fish_servings
1.4453799999999999
vioscreen_fol_deqv
656.7744863
vioscreen_fol_nat
355.27679789999996
vioscreen_fol_syn
177.3810788
vioscreen_formontn
0.006438357
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.8
vioscreen_frtsumm
3.2
vioscreen_fructose
15.15920511
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.343342653
vioscreen_g_total
5.981506849
vioscreen_g_whl
2.638219379
vioscreen_galactos
0.18742466800000002
vioscreen_gammtoco
17.69051932
vioscreen_gender
false
vioscreen_genistn
6.950658176
vioscreen_glac
106.32587759999998
vioscreen_gltc
114.2164063
vioscreen_glucose
16.80046688
vioscreen_glutamic
14.06613469
vioscreen_glycine
3.823807724
vioscreen_glycitn
0.9333150790000001
vioscreen_grams
2454.2077050000003
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.4
vioscreen_hei2010_veg
3.3
vioscreen_hei2010_whole_fruit
4.3
vioscreen_hei2010_whole_grains
7.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.1
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
4.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
79.3
vioscreen_hei_sodium
5.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
3.3
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
1.8723012430000001
vioscreen_inositol
0.332410964
vioscreen_iron
17.95728944
vioscreen_isoleuc
2.8019180089999995
vioscreen_isomalt
0.0
vioscreen_joules
10005.00205
vioscreen_juice_servings
1.5162200000000001
vioscreen_lactitol
0.0
vioscreen_lactose
0.581452085
vioscreen_legumes
0.0014246570000000002
vioscreen_leucine
5.2854518939999995
vioscreen_line_gi
479.3705908
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
7201.2328769999995
vioscreen_lycopene
168.48605519999998
vioscreen_lysine
3.664081897
vioscreen_m_egg
0.793999993
vioscreen_m_fish_hi
0.664136996
vioscreen_m_fish_lo
0.159589041
vioscreen_m_frank
0.079150683
vioscreen_m_meat
0.87386299
vioscreen_m_mpf
2.015643896
vioscreen_m_nutsd
8.705616572
vioscreen_m_organ
0.0
vioscreen_m_poult
0.238958907
vioscreen_m_soy
0.531643802
vioscreen_magnes
534.5997003
vioscreen_maltitol
0.0
vioscreen_maltose
7.725698308999999
vioscreen_mangan
6.580411895
vioscreen_mannitol
0.238520541
vioscreen_methhis3
7.300931747999999
vioscreen_methion
1.359452005
vioscreen_mfa141
0.034602737
vioscreen_mfa161
0.897561687
vioscreen_mfa181
65.57405822
vioscreen_mfa201
1.028602746
vioscreen_mfa221
0.131698629
vioscreen_mfatot
67.774497
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
25.69761344
vioscreen_nccglbr
182.80265409999998
vioscreen_nccglgr
127.8561216
vioscreen_niacin
33.93413688
vioscreen_niacineq
47.53443386
vioscreen_nitrogen
13.35959038
vioscreen_non_fried_fish_servings
1.4453799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.339287745
vioscreen_oxalic
475.66005989999996
vioscreen_oxalicm
589.7544949
vioscreen_pantothe
7.04898598
vioscreen_pectins
5.128000589
vioscreen_pfa182
30.53763913
vioscreen_pfa183
1.998712075
vioscreen_pfa184
0.029315071
vioscreen_pfa204
0.082821922
vioscreen_pfa205
0.091424655
vioscreen_pfa225
0.033945204
vioscreen_pfa226
0.18613697199999998
vioscreen_pfatot
33.05961847
vioscreen_phenylal
3.48964409
vioscreen_phosphor
1360.3414380000002
vioscreen_phytic
1375.632192
vioscreen_pinitol
0.027616436
vioscreen_potass
3342.811986
vioscreen_procdate
10/28/15
vioscreen_proline
3.860794026
vioscreen_protanim
20.76748181
vioscreen_protein
77.8471265
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
57.08060788
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
694.0
vioscreen_retinol
374.5227312
vioscreen_rgrain
3.8215342060000004
vioscreen_ribofla
1.9033974009999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.9862700000000001
vioscreen_satoco
0.0
vioscreen_selenium
156.89160959999998
vioscreen_serine
3.943506528
vioscreen_sfa100
0.030520551
vioscreen_sfa120
0.20926026600000003
vioscreen_sfa140
0.5024109720000001
vioscreen_sfa160
14.66646377
vioscreen_sfa170
0.043369863
vioscreen_sfa180
4.791287859
vioscreen_sfa200
0.775013628
vioscreen_sfa220
1.40137003
vioscreen_sfa40
0.0074520559999999994
vioscreen_sfa60
0.003616438
vioscreen_sfa80
0.017643837
vioscreen_sfatot
23.05172303
vioscreen_sodium
3405.3496579999996
vioscreen_sorbitol
0.42232875
vioscreen_srvid
14790.0
vioscreen_starch
95.60151969
vioscreen_started
12/5/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.78317905
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.048712325
vioscreen_tfa161t
0.02041096
vioscreen_tfa181t
1.439424698
vioscreen_tfa182t
0.158958874
vioscreen_tgrain
5.736136826
vioscreen_thiamin
1.7425478580000002
vioscreen_threonin
2.5169311519999997
vioscreen_time
18.0
vioscreen_totaltfa
1.682986408
vioscreen_totcla
0.033945204
vioscreen_totfolat
532.6577911
vioscreen_totsugar
67.58369542
vioscreen_tryptoph
0.816548052
vioscreen_tyrosine
2.4498901369999997
vioscreen_user_id
14790.0
vioscreen_v_drkgr
0.578575364
vioscreen_v_orange
0.511808212
vioscreen_v_other
0.572876729
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.069753422
vioscreen_v_tomato
0.020410958
vioscreen_v_total
1.75342449
vioscreen_valine
3.410520454
vioscreen_veg5_day
3.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.5
vioscreen_visit
1.0
vioscreen_vita_iu
20264.319180000002
vioscreen_vita_rae
1325.403853
vioscreen_vita_re
2276.285103
vioscreen_vitb12
3.704355736
vioscreen_vitb6
2.545534233
vioscreen_vitc
116.1986301
vioscreen_vitd
6.34893247
vioscreen_vitd2
1.552849255
vioscreen_vitd3
4.796082714
vioscreen_vitd_iu
253.9572988
vioscreen_vite_iu
38.32857984
vioscreen_vitk
334.4071062
vioscreen_water
1995.3691780000001
vioscreen_weight
Not provided
vioscreen_wgrain
1.914602619
vioscreen_whole_grain_servings
2.63822
vioscreen_xylitol
0.028054797000000003
vioscreen_zinc
12.66282106
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily