American Gut Project; 10317.000027830
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633234
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:27:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027830
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
27830
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
21.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Five or more
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-26
collection month
June
collection season
Summer
collection time
17:05
collection_timestamp
2015-06-26 17:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Not provided
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
11.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
3c76e9bd4d1bdd167b7c2871b360ca590d1d46c473f9e3d7f6de2ea9a426a19882c46d8d64df9c38ed107d793c4fff7f8319e7087f63829b029776674daf5b4e
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-76.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
Not provided
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027830
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
ee9ba811f0eee2fb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.84693152
vioscreen_a_cal
126.43096100000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.764794253
vioscreen_addsugar
34.04093001
vioscreen_adsugtot
30.17005565
vioscreen_age
215.0
vioscreen_alanine
3.22334185
vioscreen_alcohol
11.88421848
vioscreen_alcohol_servings
0.84693
vioscreen_alphacar
646.8881421
vioscreen_alphtoce
12.14178082
vioscreen_alphtoco
10.98589202
vioscreen_arginine
4.10071269
vioscreen_ash
21.1673681
vioscreen_aspartam
0.0
vioscreen_aspartic
6.377424684
vioscreen_avcarb
251.171661
vioscreen_bcodeid
Not provided
vioscreen_betacar
7012.740411
vioscreen_betacryp
196.8694135
vioscreen_betaine
208.16175090000002
vioscreen_betatoco
0.40745205799999995
vioscreen_biochana
0.006328767
vioscreen_bmi
Not provided
vioscreen_caffeine
301.3508776
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.21904
vioscreen_calcium_servings
2.91312
vioscreen_calories
1955.2828769999999
vioscreen_carbo
287.5650899
vioscreen_cholest
180.9954623
vioscreen_choline
349.5524401
vioscreen_clac9t11
0.046849321
vioscreen_clat10c12
0.010630137
vioscreen_copper
1.841753565
vioscreen_coumest
0.26060274699999997
vioscreen_cystine
0.919671213
vioscreen_d_cheese
0.066493147
vioscreen_d_milk
0.152547946
vioscreen_d_tot_soym
0.219041088
vioscreen_d_total
0.219041088
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.151452062
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.886136993
vioscreen_discfat_oil
20.60605469
vioscreen_discfat_sol
23.26216556
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0016712329999999998
vioscreen_f_citmlb
1.003369893
vioscreen_f_nj_citmlb
0.001342466
vioscreen_f_nj_other
3.756437955
vioscreen_f_nj_total
3.757808152
vioscreen_f_other
3.756437955
vioscreen_f_total
4.759808768
vioscreen_fat
57.63989726
vioscreen_fiber
36.39162029
vioscreen_fibh2o
11.80117723
vioscreen_fibinso
24.74542755
vioscreen_finished
6/26/15
vioscreen_fish_servings
1.7165400000000002
vioscreen_fol_deqv
551.5499143999999
vioscreen_fol_nat
392.83792810000006
vioscreen_fol_syn
93.30581122
vioscreen_formontn
0.0013698629999999998
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.17534
vioscreen_frt5_day
5.3
vioscreen_frtsumm
9.5
vioscreen_fructose
39.034878000000006
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
2.557918016
vioscreen_g_total
6.146327857
vioscreen_g_whl
3.588438436
vioscreen_galactos
0.115479456
vioscreen_gammtoco
9.763285932
vioscreen_gender
false
vioscreen_genistn
0.068739726
vioscreen_glac
126.10551159999999
vioscreen_gltc
139.5926263
vioscreen_glucose
33.94586901
vioscreen_glutamic
11.93202724
vioscreen_glycine
3.012876579
vioscreen_glycitn
0.0
vioscreen_grams
4279.626711999999
vioscreen_hei2010_dairy
0.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.8
vioscreen_hei_sat_fat
9.3
vioscreen_hei_score
81.8
vioscreen_hei_sodium
4.8
vioscreen_hei_sol_fat_alc_add_sug
18.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.74443861
vioscreen_inositol
0.398821938
vioscreen_iron
14.10978034
vioscreen_isoleuc
2.740082205
vioscreen_isomalt
0.0
vioscreen_joules
8180.899315000001
vioscreen_juice_servings
2.0040299999999998
vioscreen_lactitol
0.0
vioscreen_lactose
2.3939177209999998
vioscreen_legumes
0.015232876999999999
vioscreen_leucine
4.628383522
vioscreen_line_gi
640.4198202
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
11236.334929999999
vioscreen_lycopene
1131.6588179999999
vioscreen_lysine
4.132601803
vioscreen_m_egg
0.32632876899999996
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.89920554
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
0.8435342029999999
vioscreen_m_mpf
3.734575664
vioscreen_m_nutsd
0.802136983
vioscreen_m_organ
0.0
vioscreen_m_poult
1.903671306
vioscreen_m_soy
0.000767123
vioscreen_magnes
440.41190070000005
vioscreen_maltitol
0.0
vioscreen_maltose
4.649124104
vioscreen_mangan
6.484055276
vioscreen_mannitol
0.9613423390000001
vioscreen_methhis3
14.08125936
vioscreen_methion
1.3526849619999999
vioscreen_mfa141
0.028547943
vioscreen_mfa161
0.713780819
vioscreen_mfa181
19.22092921
vioscreen_mfa201
0.174684927
vioscreen_mfa221
0.01550685
vioscreen_mfatot
20.4919748
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.98589202
vioscreen_nccglbr
181.0089897
vioscreen_nccglgr
126.60912890000002
vioscreen_niacin
22.56550193
vioscreen_niacineq
34.39024508
vioscreen_nitrogen
11.38274026
vioscreen_non_fried_fish_servings
0.9225
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.251013602
vioscreen_oxalic
443.40406680000007
vioscreen_oxalicm
455.7941353
vioscreen_pantothe
5.973726455
vioscreen_pectins
6.61147996
vioscreen_pfa182
12.82539598
vioscreen_pfa183
1.110027575
vioscreen_pfa184
0.002767123
vioscreen_pfa204
0.12476712599999999
vioscreen_pfa205
0.036630142000000004
vioscreen_pfa225
0.022986302000000004
vioscreen_pfa226
0.079835615
vioscreen_pfatot
14.27808219
vioscreen_phenylal
2.732904136
vioscreen_phosphor
1100.471404
vioscreen_phytic
979.5291952
vioscreen_pinitol
0.002493151
vioscreen_potass
3937.4520549999997
vioscreen_procdate
10/28/15
vioscreen_proline
3.7355605869999997
vioscreen_protanim
34.20758776
vioscreen_protein
69.63627462
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.42893033
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
359.0
vioscreen_retinol
140.68700769999998
vioscreen_rgrain
2.618547999
vioscreen_ribofla
1.8435068630000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.69079
vioscreen_satoco
0.0
vioscreen_selenium
111.83296229999999
vioscreen_serine
2.802712469
vioscreen_sfa100
0.248602755
vioscreen_sfa120
0.306821912
vioscreen_sfa140
1.069561684
vioscreen_sfa160
9.811726108
vioscreen_sfa170
0.079397259
vioscreen_sfa180
4.973643849
vioscreen_sfa200
0.13334245
vioscreen_sfa220
0.131013698
vioscreen_sfa40
0.32556169100000004
vioscreen_sfa60
0.161534244
vioscreen_sfa80
0.121780834
vioscreen_sfatot
17.55397046
vioscreen_sodium
2851.057363
vioscreen_sorbitol
2.104328647
vioscreen_srvid
19988.0
vioscreen_starch
91.88289812
vioscreen_started
6/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
42.51057631
vioscreen_sweet_servings
0.8312200000000001
vioscreen_tagatose
3.7009043239999997
vioscreen_tfa161t
0.014493151999999999
vioscreen_tfa181t
1.491287691
vioscreen_tfa182t
0.46983563100000003
vioscreen_tgrain
6.556767043
vioscreen_thiamin
1.464082399
vioscreen_threonin
2.371397755
vioscreen_time
33.0
vioscreen_totaltfa
2.084657099
vioscreen_totcla
0.058082194000000004
vioscreen_totfolat
486.14375
vioscreen_totsugar
122.0907534
vioscreen_tryptoph
0.710821868
vioscreen_tyrosine
2.015206115
vioscreen_user_id
19988.0
vioscreen_v_drkgr
1.003808176
vioscreen_v_orange
0.09241096800000001
vioscreen_v_other
1.038027494
vioscreen_v_potato
0.353041098
vioscreen_v_starcy
0.123150687
vioscreen_v_tomato
0.138273965
vioscreen_v_total
2.748712242
vioscreen_valine
3.099342493
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
12856.20959
vioscreen_vita_rae
760.2387842
vioscreen_vita_re
1379.7917810000001
vioscreen_vitb12
2.522767117
vioscreen_vitb6
2.635616606
vioscreen_vitc
224.29208050000003
vioscreen_vitd
1.457863
vioscreen_vitd2
0.0
vioscreen_vitd3
1.457863
vioscreen_vitd_iu
58.31452001
vioscreen_vite_iu
16.36076627
vioscreen_vitk
488.8637414
vioscreen_water
3845.0739729999996
vioscreen_weight
Not provided
vioscreen_wgrain
3.9382738919999998
vioscreen_whole_grain_servings
3.5884400000000003
vioscreen_xylitol
0.049013702
vioscreen_zinc
10.90838238
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily