American Gut Project; 10317.000023020
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632610
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023020
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23020
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
24.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-30
collection month
January
collection season
Winter
collection time
08:45
collection_timestamp
2015-01-30 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
43.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f5cb3bd385e8d0b4d6a1ea735e58a0edf4816d3c1d0c2afbcbd4cf439e84c6e8e28bb791cbb51fd861e362936ed9b5841bbdb7b92a214a05fa55a4298146727f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
47.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023020
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Not provided
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
221390685a7d6cea
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.292876696
vioscreen_a_cal
34.74383562
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.115889876000001
vioscreen_addsugar
34.31383508
vioscreen_adsugtot
31.53035638
vioscreen_age
215.0
vioscreen_alanine
2.6313150480000003
vioscreen_alcohol
4.496192075
vioscreen_alcohol_servings
0.29288000000000003
vioscreen_alphacar
808.3252568
vioscreen_alphtoce
10.2895073
vioscreen_alphtoco
9.080027959
vioscreen_arginine
3.177671166
vioscreen_ash
16.89454998
vioscreen_aspartam
0.0
vioscreen_aspartic
5.043150016
vioscreen_avcarb
142.2620505
vioscreen_bcodeid
Not provided
vioscreen_betacar
6597.513014
vioscreen_betacryp
155.8156678
vioscreen_betaine
62.68942102
vioscreen_betatoco
0.241205461
vioscreen_biochana
0.005561644
vioscreen_bmi
Not provided
vioscreen_caffeine
17.61605576
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.6348199999999999
vioscreen_calcium_servings
1.78288
vioscreen_calories
1418.551884
vioscreen_carbo
166.0609268
vioscreen_cholest
165.12058009999998
vioscreen_choline
259.3290454
vioscreen_clac9t11
0.060438355
vioscreen_clat10c12
0.014410961000000002
vioscreen_copper
1.037397411
vioscreen_coumest
0.032602741
vioscreen_cystine
0.6706575579999999
vioscreen_d_cheese
0.31120549
vioscreen_d_milk
0.179150683
vioscreen_d_tot_soym
0.634821894
vioscreen_d_total
0.634821894
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.533972628
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.9015069830000002
vioscreen_discfat_oil
27.69103971
vioscreen_discfat_sol
23.43808059
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00369863
vioscreen_f_citmlb
0.863726054
vioscreen_f_nj_citmlb
0.860438349
vioscreen_f_nj_other
1.74490415
vioscreen_f_nj_total
2.6053424990000003
vioscreen_f_other
1.74490415
vioscreen_f_total
2.6086300369999997
vioscreen_fat
62.55648545
vioscreen_fiber
23.70227151
vioscreen_fibh2o
5.3086853860000005
vioscreen_fibinso
18.49589041
vioscreen_finished
1/30/15
vioscreen_fish_servings
2.38596
vioscreen_fol_deqv
347.8276969
vioscreen_fol_nat
283.43480310000007
vioscreen_fol_syn
37.85808005
vioscreen_formontn
0.001890411
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.2
vioscreen_fructose
24.73576092
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.4664109319999998
vioscreen_g_total
2.7175891610000003
vioscreen_g_whl
1.251095874
vioscreen_galactos
0.323369839
vioscreen_gammtoco
9.865452429
vioscreen_gender
false
vioscreen_genistn
0.529397207
vioscreen_glac
60.43451948
vioscreen_gltc
67.82928617
vioscreen_glucose
19.75208155
vioscreen_glutamic
9.832054661
vioscreen_glycine
2.279726295
vioscreen_glycitn
0.295753416
vioscreen_grams
1965.507363
vioscreen_hei2010_dairy
3.4
vioscreen_hei2010_empty_calories
17.2
vioscreen_hei2010_fatty_acids
6.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.8
vioscreen_hei_score
70.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.399479362
vioscreen_inositol
0.144383553
vioscreen_iron
8.586875268
vioscreen_isoleuc
2.333698764
vioscreen_isomalt
0.0
vioscreen_joules
5935.218493
vioscreen_juice_servings
0.00658
vioscreen_lactitol
0.0
vioscreen_lactose
5.074739472
vioscreen_legumes
0.058794518
vioscreen_leucine
3.915889876
vioscreen_line_gi
353.656464
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
4926.226712
vioscreen_lycopene
2771.484075
vioscreen_lysine
3.7357258
vioscreen_m_egg
0.16484931
vioscreen_m_fish_hi
0.612000013
vioscreen_m_fish_lo
0.74769864
vioscreen_m_frank
0.063342468
vioscreen_m_meat
0.94443836
vioscreen_m_mpf
3.301369863
vioscreen_m_nutsd
0.41841096200000005
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9339178220000001
vioscreen_m_soy
0.004520548
vioscreen_magnes
237.75691349999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.4313698959999999
vioscreen_mangan
2.949862211
vioscreen_mannitol
1.062191731
vioscreen_methhis3
11.70978034
vioscreen_methion
1.180602777
vioscreen_mfa141
0.059178088
vioscreen_mfa161
0.7920820679999999
vioscreen_mfa181
20.60953419
vioscreen_mfa201
0.331260242
vioscreen_mfa221
0.097287667
vioscreen_mfatot
22.10249224
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.992164758
vioscreen_nccglbr
104.1463827
vioscreen_nccglgr
72.85496575
vioscreen_niacin
12.88134364
vioscreen_niacineq
22.48019317
vioscreen_nitrogen
8.54353529
vioscreen_non_fried_fish_servings
2.38596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.333671005
vioscreen_oxalic
263.01797949999997
vioscreen_oxalicm
241.43244860000001
vioscreen_pantothe
3.258822172
vioscreen_pectins
4.820328553
vioscreen_pfa182
13.92449165
vioscreen_pfa183
1.985424303
vioscreen_pfa184
0.023808218
vioscreen_pfa204
0.084876711
vioscreen_pfa205
0.09715068199999999
vioscreen_pfa225
0.038876711
vioscreen_pfa226
0.188931525
vioscreen_pfatot
16.41180704
vioscreen_phenylal
2.2184386369999998
vioscreen_phosphor
887.2593322
vioscreen_phytic
548.8046232999999
vioscreen_pinitol
0.004767123
vioscreen_potass
2496.044178
vioscreen_procdate
10/28/15
vioscreen_proline
2.922876645
vioscreen_protanim
33.39805223
vioscreen_protein
52.76838078
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.36953526
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
586.0
vioscreen_retinol
170.37600600000002
vioscreen_rgrain
1.253041139
vioscreen_ribofla
0.9749588640000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.1255599999999997
vioscreen_satoco
0.195260265
vioscreen_selenium
72.06186858
vioscreen_serine
2.340739545
vioscreen_sfa100
0.37068494
vioscreen_sfa120
0.684958889
vioscreen_sfa140
1.564876692
vioscreen_sfa160
10.03076707
vioscreen_sfa170
0.076821926
vioscreen_sfa180
4.84246475
vioscreen_sfa200
0.158164372
vioscreen_sfa220
0.129534264
vioscreen_sfa40
0.40356165200000005
vioscreen_sfa60
0.219068491
vioscreen_sfa80
0.18539727600000003
vioscreen_sfatot
18.87312179
vioscreen_sodium
3515.04589
vioscreen_sorbitol
1.5075889269999998
vioscreen_srvid
17021.0
vioscreen_starch
41.87685413
vioscreen_started
1/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.08575342300000001
vioscreen_sucrlose
0.0
vioscreen_sucrose
35.86043718
vioscreen_sweet_servings
0.8547899999999999
vioscreen_tagatose
3.3519450980000003
vioscreen_tfa161t
0.031068494
vioscreen_tfa181t
0.9172054759999999
vioscreen_tfa182t
0.397452033
vioscreen_tgrain
2.8240822989999996
vioscreen_thiamin
0.9282740759999999
vioscreen_threonin
2.039013505
vioscreen_time
53.0
vioscreen_totaltfa
1.359342476
vioscreen_totcla
0.074849314
vioscreen_totfolat
321.2928938
vioscreen_totsugar
87.38491009999998
vioscreen_tryptoph
0.57684924
vioscreen_tyrosine
1.747452075
vioscreen_user_id
17021.0
vioscreen_v_drkgr
0.753698647
vioscreen_v_orange
0.147589038
vioscreen_v_other
1.798438503
vioscreen_v_potato
0.101397266
vioscreen_v_starcy
0.148054797
vioscreen_v_tomato
0.54953421
vioscreen_v_total
3.498740167
vioscreen_valine
2.64139722
vioscreen_veg5_day
6.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.0
vioscreen_visit
1.0
vioscreen_vita_iu
12367.88082
vioscreen_vita_rae
760.3421232999999
vioscreen_vita_re
1350.3081339999999
vioscreen_vitb12
2.533698597
vioscreen_vitb6
1.4139176880000002
vioscreen_vitc
182.0078767
vioscreen_vitd
4.453479506
vioscreen_vitd2
0.000438356
vioscreen_vitd3
4.45304139
vioscreen_vitd_iu
178.1391802
vioscreen_vite_iu
13.60696035
vioscreen_vitk
290.03319780000004
vioscreen_water
1676.823459
vioscreen_weight
Not provided
vioscreen_wgrain
1.5710683330000002
vioscreen_whole_grain_servings
1.2511
vioscreen_xylitol
0.059945214000000004
vioscreen_zinc
7.11578018
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
59.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)