10317.000023026; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632613
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023026
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
23026
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
21.52
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-14
collection month
January
collection season
Winter
collection time
06:45
collection_timestamp
2015-01-14 06:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Mideast
elevation
127.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f4369de0bb01245df1a650c2401601974654f0123cfacb07d0061d645f28fb26aa1f137637eb5648d6b5a1ab2f05dd6ea3f84c3a10db3adf697e839adc57bd99
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.1
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-77.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023026
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
85a4f3ecd179d00e
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.078630139
vioscreen_a_cal
9.817452376
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.9764109989999996
vioscreen_addsugar
14.41619087
vioscreen_adsugtot
13.65427413
vioscreen_age
215.0
vioscreen_alanine
2.181835603
vioscreen_alcohol
1.229671196
vioscreen_alcohol_servings
0.07862999999999999
vioscreen_alphacar
1520.265753
vioscreen_alphtoce
5.73172691
vioscreen_alphtoco
5.3611786310000005
vioscreen_arginine
2.239835723
vioscreen_ash
10.50668477
vioscreen_aspartam
0.0
vioscreen_aspartic
4.0818904510000005
vioscreen_avcarb
80.34013806
vioscreen_bcodeid
Not provided
vioscreen_betacar
6407.508904
vioscreen_betacryp
82.22690497
vioscreen_betaine
31.08082994
vioscreen_betatoco
0.048383555999999994
vioscreen_biochana
0.013342467
vioscreen_bmi
Not provided
vioscreen_caffeine
83.80263271
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.19537
vioscreen_calcium_servings
1.7487099999999998
vioscreen_calories
867.3175514000001
vioscreen_carbo
90.35526541
vioscreen_cholest
278.6293022
vioscreen_choline
313.77675510000006
vioscreen_clac9t11
0.054493149000000005
vioscreen_clat10c12
0.010383561999999999
vioscreen_copper
1.12769859
vioscreen_coumest
0.0004931509999999999
vioscreen_cystine
0.509068486
vioscreen_d_cheese
0.0014246570000000002
vioscreen_d_milk
0.820109495
vioscreen_d_tot_soym
1.195369856
vioscreen_d_total
1.195369856
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.028082192000000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.581835645
vioscreen_discfat_oil
14.85701386
vioscreen_discfat_sol
16.23454757
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000410959
vioscreen_f_citmlb
0.098575341
vioscreen_f_nj_citmlb
0.093808213
vioscreen_f_nj_other
0.366356168
vioscreen_f_nj_total
0.46016440200000003
vioscreen_f_other
0.957232917
vioscreen_f_total
1.055780782
vioscreen_fat
38.56082245
vioscreen_fiber
10.01613669
vioscreen_fibh2o
2.204246709
vioscreen_fibinso
7.900220061000001
vioscreen_finished
1/12/15
vioscreen_fish_servings
2.20154
vioscreen_fol_deqv
231.04760269999997
vioscreen_fol_nat
220.057042
vioscreen_fol_syn
6.4611776270000005
vioscreen_formontn
0.001068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.3
vioscreen_frtsumm
2.1
vioscreen_fructose
16.242138
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.315424671
vioscreen_g_total
0.315424671
vioscreen_g_whl
0.0
vioscreen_galactos
0.502931485
vioscreen_gammtoco
3.453150752
vioscreen_gender
false
vioscreen_genistn
0.024712327000000003
vioscreen_glac
28.81685039
vioscreen_gltc
31.94706764
vioscreen_glucose
13.59860204
vioscreen_glutamic
7.239753451
vioscreen_glycine
1.6694247309999999
vioscreen_glycitn
0.004273972
vioscreen_grams
1456.2982880000002
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
17.7
vioscreen_hei2010_fatty_acids
6.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.9
vioscreen_hei_score
73.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
17.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.158849429
vioscreen_inositol
0.088000008
vioscreen_iron
5.304630311
vioscreen_isoleuc
2.005013745
vioscreen_isomalt
0.0
vioscreen_joules
3628.8571920000004
vioscreen_juice_servings
1.1913200000000002
vioscreen_lactitol
0.0
vioscreen_lactose
15.50531491
vioscreen_legumes
0.037232877000000004
vioscreen_leucine
3.439780875
vioscreen_line_gi
169.1078553
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
3501.073288
vioscreen_lycopene
4658.630822
vioscreen_lysine
3.32038407
vioscreen_m_egg
0.8621369659999999
vioscreen_m_fish_hi
0.775424654
vioscreen_m_fish_lo
0.479123301
vioscreen_m_frank
0.079150683
vioscreen_m_meat
0.478027386
vioscreen_m_mpf
2.383506796
vioscreen_m_nutsd
0.010328766999999999
vioscreen_m_organ
0.29328768
vioscreen_m_poult
0.27852055800000003
vioscreen_m_soy
0.00139726
vioscreen_magnes
152.8071169
vioscreen_maltitol
0.0
vioscreen_maltose
0.539616415
vioscreen_mangan
2.017150879
vioscreen_mannitol
0.205287672
vioscreen_methhis3
7.455890812000001
vioscreen_methion
1.080246515
vioscreen_mfa141
0.021397261
vioscreen_mfa161
0.5543287720000001
vioscreen_mfa181
13.37846613
vioscreen_mfa201
0.261342464
vioscreen_mfa221
0.12153424800000001
vioscreen_mfatot
14.40317851
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
5.3611786310000005
vioscreen_nccglbr
53.05496039999999
vioscreen_nccglgr
37.10893087
vioscreen_niacin
8.210247886
vioscreen_niacineq
15.65967064
vioscreen_nitrogen
6.6918630939999995
vioscreen_non_fried_fish_servings
2.20154
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.650520555
vioscreen_oxalic
156.78025469999997
vioscreen_oxalicm
146.3850813
vioscreen_pantothe
3.953068145
vioscreen_pectins
2.361452369
vioscreen_pfa182
6.9612331439999995
vioscreen_pfa183
1.269506669
vioscreen_pfa184
0.028328767999999997
vioscreen_pfa204
0.13663013400000001
vioscreen_pfa205
0.09712329
vioscreen_pfa225
0.037342466
vioscreen_pfa226
0.218547957
vioscreen_pfatot
8.851561831
vioscreen_phenylal
1.907890424
vioscreen_phosphor
744.3398973
vioscreen_phytic
108.3719499
vioscreen_pinitol
0.000164384
vioscreen_potass
1991.3741440000001
vioscreen_procdate
10/28/15
vioscreen_proline
2.471397254
vioscreen_protanim
34.4715914
vioscreen_protein
41.95948737
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
7.482767685
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
624.0
vioscreen_retinol
748.2956336
vioscreen_rgrain
0.22534246600000002
vioscreen_ribofla
1.378054684
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.2827899999999999
vioscreen_satoco
0.0
vioscreen_selenium
57.25587008
vioscreen_serine
2.118246836
vioscreen_sfa100
0.219972605
vioscreen_sfa120
0.232164399
vioscreen_sfa140
0.983616575
vioscreen_sfa160
6.493808861000001
vioscreen_sfa170
0.04731507
vioscreen_sfa180
2.713753645
vioscreen_sfa200
0.076164392
vioscreen_sfa220
0.051123287
vioscreen_sfa40
0.23583562100000002
vioscreen_sfa60
0.19589041100000001
vioscreen_sfa80
0.177917794
vioscreen_sfatot
11.48619167
vioscreen_sodium
1869.87637
vioscreen_sorbitol
0.627178161
vioscreen_srvid
16854.0
vioscreen_starch
9.685670618
vioscreen_started
1/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.41594472
vioscreen_sweet_servings
0.047580000000000004
vioscreen_tagatose
2.868246669
vioscreen_tfa161t
0.014630136
vioscreen_tfa181t
0.5801369439999999
vioscreen_tfa182t
0.19260274800000002
vioscreen_tgrain
0.22534246600000002
vioscreen_thiamin
0.535643821
vioscreen_threonin
1.794958831
vioscreen_time
28.0
vioscreen_totaltfa
0.840438467
vioscreen_totcla
0.06523288
vioscreen_totfolat
226.51823629999998
vioscreen_totsugar
63.0695045
vioscreen_tryptoph
0.44797258799999995
vioscreen_tyrosine
1.573369943
vioscreen_user_id
16854.0
vioscreen_v_drkgr
0.46224662
vioscreen_v_orange
0.339178091
vioscreen_v_other
0.594191794
vioscreen_v_potato
0.035643836
vioscreen_v_starcy
0.127945208
vioscreen_v_tomato
0.41378081899999997
vioscreen_v_total
1.9729863419999998
vioscreen_valine
2.4021368990000003
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.9
vioscreen_visit
1.0
vioscreen_vita_iu
14509.46712
vioscreen_vita_rae
1349.025257
vioscreen_vita_re
1949.7553079999998
vioscreen_vitb12
6.938356164
vioscreen_vitb6
0.992465837
vioscreen_vitc
67.78389341
vioscreen_vitd
7.397809422999999
vioscreen_vitd2
0.000219178
vioscreen_vitd3
7.397590031
vioscreen_vitd_iu
295.91237689999997
vioscreen_vite_iu
7.988300647000001
vioscreen_vitk
161.1353382
vioscreen_water
1280.5126710000002
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.015205477
vioscreen_zinc
4.779616599
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never