American Gut Project; 10317.000022676
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632566
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022676
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22676
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
24.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
02/05/2015
collection month
February
collection season
Winter
collection time
09:45
collection_timestamp
2015-02-05 09:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
4.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
c2cf0e7493ca25a44a2777005c06b486d1b2e36857983091a1542ece5a9137e7b4ca74f273dd9b839f45fa5929a2c6d36faef5e4ef69edf6b3f993767b65abe8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
27.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-82.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022676
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Not provided
survey_id
7ab07a03a4ab0bef
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.197095897
vioscreen_a_cal
149.30700980000003
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.518520575
vioscreen_addsugar
18.61065791
vioscreen_adsugtot
14.56493204
vioscreen_age
214.0
vioscreen_alanine
2.8004110260000004
vioscreen_alcohol
18.70520521
vioscreen_alcohol_servings
1.1971
vioscreen_alphacar
2778.760788
vioscreen_alphtoce
12.5966837
vioscreen_alphtoco
11.15956162
vioscreen_arginine
3.9833693410000004
vioscreen_ash
22.9966021
vioscreen_aspartam
0.0
vioscreen_aspartic
6.491095222
vioscreen_avcarb
168.1087757
vioscreen_bcodeid
Not provided
vioscreen_betacar
17057.563009999998
vioscreen_betacryp
326.94409249999995
vioscreen_betaine
76.89828767
vioscreen_betatoco
0.4093699
vioscreen_biochana
0.042273973
vioscreen_bmi
Not provided
vioscreen_caffeine
355.8477312
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.032330000000000005
vioscreen_calcium_servings
2.53625
vioscreen_calories
1551.230993
vioscreen_carbo
210.55971749999998
vioscreen_cholest
36.36523438
vioscreen_choline
298.6153253
vioscreen_clac9t11
0.005369863000000001
vioscreen_clat10c12
0.002849315
vioscreen_copper
1.810082339
vioscreen_coumest
0.204657526
vioscreen_cystine
0.752328784
vioscreen_d_cheese
0.005643835
vioscreen_d_milk
0.026684931000000002
vioscreen_d_tot_soym
0.032328765
vioscreen_d_total
0.032328765
vioscreen_d_yogurt
0.0
vioscreen_daidzein
18.50616305
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.060438517
vioscreen_discfat_oil
26.74033069
vioscreen_discfat_sol
6.309670644
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000821918
vioscreen_f_citmlb
1.035616522
vioscreen_f_nj_citmlb
1.031041143
vioscreen_f_nj_other
1.857397294
vioscreen_f_nj_total
2.88846586
vioscreen_f_other
1.857397294
vioscreen_f_total
2.8930413230000003
vioscreen_fat
48.30654966
vioscreen_fiber
42.45084546
vioscreen_fibh2o
12.85986462
vioscreen_fibinso
29.66482502
vioscreen_finished
12/29/14
vioscreen_fish_servings
2.01
vioscreen_fol_deqv
644.8067637
vioscreen_fol_nat
582.486601
vioscreen_fol_syn
36.60747806
vioscreen_formontn
0.020630138
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
5.8
vioscreen_fructose
30.59941941
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.5366299559999999
vioscreen_g_total
2.8395340589999996
vioscreen_g_whl
1.3028766790000001
vioscreen_galactos
0.20572599600000002
vioscreen_gammtoco
12.24227312
vioscreen_gender
false
vioscreen_genistn
23.51725974
vioscreen_glac
62.41434075
vioscreen_gltc
72.89909568
vioscreen_glucose
25.09463024
vioscreen_glutamic
11.250191300000001
vioscreen_glycine
2.551069035
vioscreen_glycitn
6.104629976
vioscreen_grams
4114.563014
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.8
vioscreen_height
Not provided
vioscreen_histidin
1.469424731
vioscreen_inositol
0.281479425
vioscreen_iron
14.19783685
vioscreen_isoleuc
2.4324382630000003
vioscreen_isomalt
0.0
vioscreen_joules
6490.34589
vioscreen_juice_servings
0.00915
vioscreen_lactitol
0.0
vioscreen_lactose
0.463671248
vioscreen_legumes
0.67375342
vioscreen_leucine
4.039753451
vioscreen_line_gi
412.90218319999997
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
14867.06301
vioscreen_lycopene
9867.919178
vioscreen_lysine
3.338438102
vioscreen_m_egg
0.100547947
vioscreen_m_fish_hi
0.293534245
vioscreen_m_fish_lo
0.8518629940000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.056547944
vioscreen_m_mpf
1.262301427
vioscreen_m_nutsd
1.1166301570000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.886383558
vioscreen_magnes
451.74768839999996
vioscreen_maltitol
0.0
vioscreen_maltose
3.134767632
vioscreen_mangan
6.711369595
vioscreen_mannitol
0.997205593
vioscreen_methhis3
4.181890117
vioscreen_methion
0.920931631
vioscreen_mfa141
0.003068493
vioscreen_mfa161
0.150986313
vioscreen_mfa181
15.57309637
vioscreen_mfa201
0.300520555
vioscreen_mfa221
0.022383562000000003
vioscreen_mfatot
16.24531518
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
11.15956162
vioscreen_nccglbr
115.7406892
vioscreen_nccglgr
80.96282641
vioscreen_niacin
16.08547999
vioscreen_niacineq
27.22320473
vioscreen_nitrogen
9.925892953
vioscreen_non_fried_fish_servings
2.01
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.4133424519999997
vioscreen_oxalic
403.7438356
vioscreen_oxalicm
368.97243149999997
vioscreen_pantothe
5.199506368
vioscreen_pectins
9.140027692
vioscreen_pfa182
16.21684771
vioscreen_pfa183
2.309780842
vioscreen_pfa184
0.003452055
vioscreen_pfa204
0.017315068
vioscreen_pfa205
0.02682192
vioscreen_pfa225
0.00830137
vioscreen_pfa226
0.065315064
vioscreen_pfatot
18.71227392
vioscreen_phenylal
2.592136832
vioscreen_phosphor
1085.943493
vioscreen_phytic
1141.959932
vioscreen_pinitol
0.13438356
vioscreen_potass
4661.7
vioscreen_procdate
10/28/15
vioscreen_proline
2.940411293
vioscreen_protanim
10.13876686
vioscreen_protein
60.04013806
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
49.90348352
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
666.0
vioscreen_retinol
20.72208235
vioscreen_rgrain
1.762438463
vioscreen_ribofla
1.7206845640000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.20233
vioscreen_satoco
0.0
vioscreen_selenium
62.45205479999999
vioscreen_serine
2.8515621660000003
vioscreen_sfa100
0.022684931000000002
vioscreen_sfa120
0.048328771
vioscreen_sfa140
0.17682192
vioscreen_sfa160
5.423725787
vioscreen_sfa170
0.031150687000000003
vioscreen_sfa180
2.237397327
vioscreen_sfa200
0.16194519699999999
vioscreen_sfa220
0.268630145
vioscreen_sfa40
0.027123287000000003
vioscreen_sfa60
0.010246575
vioscreen_sfa80
0.010438356
vioscreen_sfatot
8.510683995
vioscreen_sodium
3585.2431509999997
vioscreen_sorbitol
1.0575615870000001
vioscreen_srvid
16672.0
vioscreen_starch
56.02298801
vioscreen_started
12/29/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.73301049
vioscreen_sweet_servings
0.13085
vioscreen_tagatose
0.5867397360000001
vioscreen_tfa161t
0.00539726
vioscreen_tfa181t
0.43846577700000006
vioscreen_tfa182t
0.20071231399999998
vioscreen_tgrain
2.989506635
vioscreen_thiamin
1.436081978
vioscreen_threonin
2.285342031
vioscreen_time
23.0
vioscreen_totaltfa
0.669397265
vioscreen_totcla
0.00838356
vioscreen_totfolat
619.0940497
vioscreen_totsugar
89.25880244
vioscreen_tryptoph
0.668164355
vioscreen_tyrosine
1.85137003
vioscreen_user_id
16672.0
vioscreen_v_drkgr
1.348739666
vioscreen_v_orange
0.6592602870000001
vioscreen_v_other
3.287452175
vioscreen_v_potato
0.058493152
vioscreen_v_starcy
0.011315068999999999
vioscreen_v_tomato
0.693753428
vioscreen_v_total
6.059562286
vioscreen_valine
2.73038397
vioscreen_veg5_day
10.8
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
12.0
vioscreen_visit
1.0
vioscreen_vita_iu
31088.47945
vioscreen_vita_rae
1571.590753
vioscreen_vita_re
3122.459589
vioscreen_vitb12
0.8490137390000001
vioscreen_vitb6
2.085918103
vioscreen_vitc
307.9435788
vioscreen_vitd
2.210410925
vioscreen_vitd2
0.0
vioscreen_vitd3
2.210410925
vioscreen_vitd_iu
88.41643702
vioscreen_vite_iu
16.60082005
vioscreen_vitk
769.3476883999999
vioscreen_water
3755.279452
vioscreen_weight
Not provided
vioscreen_wgrain
1.227095931
vioscreen_whole_grain_servings
1.30288
vioscreen_xylitol
0.066712335
vioscreen_zinc
6.864274534
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily