American Gut Project; 10317.000031099
human skin metagenome
American Gut Project Forehead Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3634250
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-05T23:01:54Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031099
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
No
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031099
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1961
bmi
24.63
bmi_cat
Normal
bmi_corrected
24.63
body habitat
UBERON:skin
body product
UBERON:sebum
body site
UBERON:skin of head
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-29
collection month
July
collection season
Summer
collection time
06:25
collection_timestamp
2015-07-29 06:25
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Mideast
elevation
243.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-skin
env_material
sebum
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA:NY
gluten
No
has_physical_specimen
true
height cm
172
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
c652f7d5d732f3e629d4d90cf706462d9f50414ad33c8efbe370e13cba2467159fd00b1af99fda0aaa19aab27b068e2d581735424ec0b886d2867320bad0e931
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-74.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031099
sample type
Forehead
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
No
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Yes
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
True
subset_antibiotic_history
True
subset_bmi
True
subset_diabetes
True
subset_healthy
True
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
203b464bccdd61ab
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.320986061
vioscreen_addsugar
28.64764287
vioscreen_adsugtot
27.86101509
vioscreen_age
215
vioscreen_alanine
2.935561925
vioscreen_alcohol
0.001534247
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
3626.109932
vioscreen_alphtoce
16.10660183
vioscreen_alphtoco
14.70342466
vioscreen_arginine
3.303670805
vioscreen_ash
23.02690497
vioscreen_aspartam
0
vioscreen_aspartic
7.567452376
vioscreen_avcarb
142.3940711
vioscreen_bcodeid
Not provided
vioscreen_betacar
21803.68493
vioscreen_betacryp
402.7098031
vioscreen_betaine
16.0428216
vioscreen_betatoco
0.370958846
vioscreen_biochana
0.020328767
vioscreen_bmi
Not provided
vioscreen_caffeine
351.414726
vioscreen_calcium
Yes
vioscreen_calcium_avg
685
vioscreen_calcium_dose
800
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
1.71014
vioscreen_calcium_servings
4.11929
vioscreen_calories
1645.705651
vioscreen_carbo
177.0538206
vioscreen_cholest
387.1585616
vioscreen_choline
461.7489298
vioscreen_clac9t11
0.079260275
vioscreen_clat10c12
0.015260273
vioscreen_copper
1.344274066
vioscreen_coumest
0.18687671
vioscreen_cystine
0.809534277
vioscreen_d_cheese
1.09720551
vioscreen_d_milk
0.114191782
vioscreen_d_tot_soym
1.71013702
vioscreen_d_total
1.71013702
vioscreen_d_yogurt
0.498438336
vioscreen_daidzein
4.577671166
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.867451707
vioscreen_discfat_oil
38.97123555
vioscreen_discfat_sol
31.19443761
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002219178
vioscreen_f_citmlb
0.967287665
vioscreen_f_nj_citmlb
0.964821844
vioscreen_f_nj_other
3.048739833
vioscreen_f_nj_total
4.013561176
vioscreen_f_other
3.048739833
vioscreen_f_total
4.016026996
vioscreen_fat
86.71963827
vioscreen_fiber
34.66052547
vioscreen_fibh2o
10.23041123
vioscreen_fibinso
24.51317958
vioscreen_finished
7/15/15
vioscreen_fish_servings
1.21385
vioscreen_fol_deqv
459.85625
vioscreen_fol_nat
459.85625
vioscreen_fol_syn
0
vioscreen_formontn
0.005506849
vioscreen_fried_fish_servings
0
vioscreen_fried_food_servings
0
vioscreen_frt5_day
6
vioscreen_frtsumm
8
vioscreen_fructose
33.21569991
vioscreen_fruit_servings
6
vioscreen_g_nwhl
0.009589041
vioscreen_g_total
0.009589041
vioscreen_g_whl
0
vioscreen_galactos
1.556082279
vioscreen_gammtoco
12.18816487
vioscreen_gender
F
vioscreen_genistn
6.190027023
vioscreen_glac
48.40684932
vioscreen_gltc
54.7601616
vioscreen_glucose
35.89980469
vioscreen_glutamic
11.1498087
vioscreen_glycine
2.247479499
vioscreen_glycitn
0.72413698
vioscreen_grams
4343.538356
vioscreen_hei2010_dairy
8
vioscreen_hei2010_empty_calories
17.1
vioscreen_hei2010_fatty_acids
6.3
vioscreen_hei2010_fruit
5
vioscreen_hei2010_greens_beans
5
vioscreen_hei2010_protien_foods
5
vioscreen_hei2010_refined_grains
10
vioscreen_hei2010_score
73
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5
vioscreen_hei2010_whole_fruit
5
vioscreen_hei2010_whole_grains
0
vioscreen_hei_drk_g_org_veg_leg
5
vioscreen_hei_fruit
5
vioscreen_hei_grains
0
vioscreen_hei_meat_beans
10
vioscreen_hei_milk
8
vioscreen_hei_non_juice_frt
5
vioscreen_hei_oils
10
vioscreen_hei_sat_fat
1
vioscreen_hei_score
68
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
17.7
vioscreen_hei_veg
5
vioscreen_hei_whl_grains
0
vioscreen_height
Not provided
vioscreen_histidin
1.670301296
vioscreen_inositol
0.17567124
vioscreen_iron
9.902959787
vioscreen_isoleuc
2.940218991
vioscreen_isomalt
0
vioscreen_joules
6885.629452
vioscreen_juice_servings
0.00496
vioscreen_lactitol
0
vioscreen_lactose
9.584055276
vioscreen_legumes
0
vioscreen_leucine
4.868355696
vioscreen_line_gi
349.8921661
vioscreen_low_fat_dairy_serving
0.49844
vioscreen_lutzeax
22970.69863
vioscreen_lycopene
2697.869863
vioscreen_lysine
4.316301236
vioscreen_m_egg
1.49753418
vioscreen_m_fish_hi
0.544246559
vioscreen_m_fish_lo
0.147424661
vioscreen_m_frank
0.185452061
vioscreen_m_meat
0.516712304
vioscreen_m_mpf
1.39386304
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
0
vioscreen_m_poult
0
vioscreen_m_soy
0.362191772
vioscreen_magnes
348.3100385
vioscreen_maltitol
0
vioscreen_maltose
1.568712543
vioscreen_mangan
4.69501418
vioscreen_mannitol
0.430657499
vioscreen_methhis3
4.767370104
vioscreen_methion
1.373506729
vioscreen_mfa141
0.127808223
vioscreen_mfa161
1.220191767
vioscreen_mfa181
32.77460135
vioscreen_mfa201
0.414246609
vioscreen_mfa221
0.13668493
vioscreen_mfatot
34.90241064
vioscreen_multi_calcium_avg
171
vioscreen_multi_calcium_dose
200
vioscreen_multivitamin
Yes
vioscreen_multivitamin_freq
6
vioscreen_natoco
14.70342466
vioscreen_nccglbr
97.23055437
vioscreen_nccglgr
68.01268729
vioscreen_niacin
14.26994729
vioscreen_niacineq
25.56008134
vioscreen_nitrogen
10.26627314
vioscreen_non_fried_fish_servings
1.21385
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.467315089
vioscreen_oxalic
240.3678082
vioscreen_oxalicm
297.5647474
vioscreen_pantothe
6.535040534
vioscreen_pectins
7.950711687
vioscreen_pfa182
15.51813998
vioscreen_pfa183
2.162548159
vioscreen_pfa184
0.024082192
vioscreen_pfa204
0.156684928
vioscreen_pfa205
0.076000005
vioscreen_pfa225
0.031863011
vioscreen_pfa226
0.172931493
vioscreen_pfatot
18.22589095
vioscreen_phenylal
2.912191981
vioscreen_phosphor
1223.426798
vioscreen_phytic
447.6872432
vioscreen_pinitol
0.032082192
vioscreen_potass
4191.679452
vioscreen_procdate
10/28/15
vioscreen_proline
3.942136665
vioscreen_protanim
37.89290454
vioscreen_protein
63.51890518
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.61794735
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
291
vioscreen_retinol
337.15503
vioscreen_rgrain
0.001315068
vioscreen_ribofla
2.234876492
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
4.43107
vioscreen_satoco
0
vioscreen_selenium
70.98144799
vioscreen_serine
3.369588774
vioscreen_sfa100
0.533999968
vioscreen_sfa120
0.60076712
vioscreen_sfa140
2.460739512
vioscreen_sfa160
14.89550781
vioscreen_sfa170
0.112794526
vioscreen_sfa180
5.446712463
vioscreen_sfa200
0.234027413
vioscreen_sfa220
0.267589036
vioscreen_sfa40
0.615780849
vioscreen_sfa60
0.340767116
vioscreen_sfa80
0.238191788
vioscreen_sfatot
26.268247
vioscreen_sodium
3047.905822
vioscreen_sorbitol
3.808685052
vioscreen_srvid
20153
vioscreen_starch
11.30682256
vioscreen_started
7/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0
vioscreen_sucrlose
0
vioscreen_sucrose
34.62293183
vioscreen_sweet_servings
0
vioscreen_tagatose
3.665369823
vioscreen_tfa161t
0.079643835
vioscreen_tfa181t
0.998219195
vioscreen_tfa182t
0.290630142
vioscreen_tgrain
0.001315068
vioscreen_thiamin
0.930054881
vioscreen_threonin
2.575013879
vioscreen_time
17
vioscreen_totaltfa
1.375863104
vioscreen_totcla
0.094520548
vioscreen_totfolat
459.85625
vioscreen_totsugar
119.2433433
vioscreen_tryptoph
0.678246527
vioscreen_tyrosine
2.347424651
vioscreen_user_id
20153
vioscreen_v_drkgr
1.646958777
vioscreen_v_orange
0.746602766
vioscreen_v_other
2.797095897
vioscreen_v_potato
0
vioscreen_v_starcy
0
vioscreen_v_tomato
0.511506841
vioscreen_v_total
5.702137067
vioscreen_valine
3.477095931
vioscreen_veg5_day
11.7
vioscreen_vegetable_servings
6
vioscreen_vegsumm
11.4
vioscreen_visit
1
vioscreen_vita_iu
40821.00822
vioscreen_vita_rae
2321.994863
vioscreen_vita_re
4306.841096
vioscreen_vitb12
3.257589095
vioscreen_vitb6
1.977342579
vioscreen_vitc
292.2369435
vioscreen_vitd
6.807314854
vioscreen_vitd2
0
vioscreen_vitd3
6.807314854
vioscreen_vitd_iu
272.2925942
vioscreen_vite_iu
21.89940069
vioscreen_vitk
1093.429966
vioscreen_water
4005.89589
vioscreen_weight
Not provided
vioscreen_wgrain
0
vioscreen_whole_grain_servings
0
vioscreen_xylitol
0.074547948
vioscreen_zinc
8.175286949
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
73
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never