American Gut Project; 10317.000013959
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633832
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-10T05:20:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000013959
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000013959
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
21.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
10:15
collection_timestamp
2015-07-28 10:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
178.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
4377e5805717358641a98d60efac3feabaa5151a75df73876c88b83b0612d7a6b95e96aa96abff2782426a41079c8c03675748e344daad7f3a60c2fc8713f530
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-89.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000013959
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
736e42e3f176e020
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000630137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.877726014
vioscreen_addsugar
10.40462998
vioscreen_adsugtot
8.989889903
vioscreen_age
215.0
vioscreen_alanine
3.235452229
vioscreen_alcohol
0.003068493
vioscreen_alcohol_servings
0.00063
vioscreen_alphacar
2333.21387
vioscreen_alphtoce
11.36164517
vioscreen_alphtoco
10.30358853
vioscreen_arginine
3.8997535180000003
vioscreen_ash
15.16197292
vioscreen_aspartam
0.0
vioscreen_aspartic
6.085288019
vioscreen_avcarb
92.77246361
vioscreen_bcodeid
Not provided
vioscreen_betacar
9438.150684999999
vioscreen_betacryp
256.6079837
vioscreen_betaine
30.30514769
vioscreen_betatoco
0.264219185
vioscreen_biochana
0.015999998999999997
vioscreen_bmi
Not provided
vioscreen_caffeine
77.39186109
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
0.2646
vioscreen_calcium_servings
1.28348
vioscreen_calories
1207.172346
vioscreen_carbo
115.5770334
vioscreen_cholest
167.75625
vioscreen_choline
279.9328339
vioscreen_clac9t11
0.053095893
vioscreen_clat10c12
0.015342465
vioscreen_copper
1.149479613
vioscreen_coumest
0.005616439
vioscreen_cystine
0.7134246409999999
vioscreen_d_cheese
0.187041108
vioscreen_d_milk
0.075589042
vioscreen_d_tot_soym
0.264602766
vioscreen_d_total
0.264602766
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.06528767099999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.3958903269999998
vioscreen_discfat_oil
34.93175567
vioscreen_discfat_sol
12.14835724
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002958904
vioscreen_f_citmlb
0.6308493000000001
vioscreen_f_nj_citmlb
0.624876717
vioscreen_f_nj_other
0.7770685070000001
vioscreen_f_nj_total
1.401945182
vioscreen_f_other
0.7770685070000001
vioscreen_f_total
1.407917848
vioscreen_fat
61.67753639
vioscreen_fiber
22.80588613
vioscreen_fibh2o
3.9633695419999997
vioscreen_fibinso
19.05978168
vioscreen_finished
7/21/15
vioscreen_fish_servings
1.3865399999999999
vioscreen_fol_deqv
356.14574060000007
vioscreen_fol_nat
332.8590325
vioscreen_fol_syn
13.67460269
vioscreen_formontn
0.005068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.8
vioscreen_fructose
16.6272889
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.68515069
vioscreen_g_total
0.737945222
vioscreen_g_whl
0.052794522
vioscreen_galactos
0.31347944699999997
vioscreen_gammtoco
9.390109964
vioscreen_gender
false
vioscreen_genistn
0.06717808900000001
vioscreen_glac
37.43994542
vioscreen_gltc
43.19696329
vioscreen_glucose
14.88948122
vioscreen_glutamic
10.15780782
vioscreen_glycine
2.902520668
vioscreen_glycitn
0.012630137
vioscreen_grams
3126.773973
vioscreen_hei2010_dairy
1.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.8
vioscreen_hei_score
69.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
1.652520334
vioscreen_inositol
0.15115069
vioscreen_iron
9.072959921
vioscreen_isoleuc
2.586410899
vioscreen_isomalt
0.0
vioscreen_joules
5050.808562
vioscreen_juice_servings
0.01195
vioscreen_lactitol
0.0
vioscreen_lactose
1.12767125
vioscreen_legumes
0.0
vioscreen_leucine
4.404466101000001
vioscreen_line_gi
274.0325771
vioscreen_low_fat_dairy_serving
0.04123
vioscreen_lutzeax
5474.462329
vioscreen_lycopene
5799.008904
vioscreen_lysine
4.158603114
vioscreen_m_egg
0.307726027
vioscreen_m_fish_hi
0.197589049
vioscreen_m_fish_lo
0.592767125
vioscreen_m_frank
0.132493152
vioscreen_m_meat
1.991616445
vioscreen_m_mpf
3.9758357639999997
vioscreen_m_nutsd
1.7053424990000001
vioscreen_m_organ
0.0
vioscreen_m_poult
1.061589071
vioscreen_m_soy
0.00260274
vioscreen_magnes
254.5294949
vioscreen_maltitol
0.0
vioscreen_maltose
0.662821898
vioscreen_mangan
3.35890411
vioscreen_mannitol
0.41561638799999995
vioscreen_methhis3
13.97564346
vioscreen_methion
1.327013658
vioscreen_mfa141
0.06293151
vioscreen_mfa161
0.689561567
vioscreen_mfa181
24.45093108
vioscreen_mfa201
0.331643823
vioscreen_mfa221
0.01358904
vioscreen_mfatot
25.66210938
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
10.30358853
vioscreen_nccglbr
70.38715218
vioscreen_nccglgr
49.24309182
vioscreen_niacin
18.67525953
vioscreen_niacineq
28.62503746
vioscreen_nitrogen
9.83879428
vioscreen_non_fried_fish_servings
1.3865399999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.8455345680000002
vioscreen_oxalic
202.9486729
vioscreen_oxalicm
197.4330908
vioscreen_pantothe
3.600492963
vioscreen_pectins
4.584629843
vioscreen_pfa182
14.54430116
vioscreen_pfa183
1.746356285
vioscreen_pfa184
0.0030410959999999996
vioscreen_pfa204
0.103917799
vioscreen_pfa205
0.014547945
vioscreen_pfa225
0.016958904
vioscreen_pfa226
0.065671226
vioscreen_pfatot
16.52887682
vioscreen_phenylal
2.469013538
vioscreen_phosphor
804.9384418
vioscreen_phytic
409.4881421
vioscreen_pinitol
0.001287671
vioscreen_potass
2521.9996579999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.9579997860000002
vioscreen_protanim
37.52271511
vioscreen_protein
60.38517765
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.86446383
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
271.0
vioscreen_retinol
99.03753211
vioscreen_rgrain
0.7132603479999999
vioscreen_ribofla
1.022109693
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.4000800000000004
vioscreen_satoco
0.0
vioscreen_selenium
76.30592359
vioscreen_serine
2.6159997390000003
vioscreen_sfa100
0.139123263
vioscreen_sfa120
0.182712335
vioscreen_sfa140
0.788219212
vioscreen_sfa160
8.687919387
vioscreen_sfa170
0.095917814
vioscreen_sfa180
3.429808567
vioscreen_sfa200
0.23808219600000002
vioscreen_sfa220
0.331863006
vioscreen_sfa40
0.185095905
vioscreen_sfa60
0.094739721
vioscreen_sfa80
0.061287674
vioscreen_sfatot
14.45657641
vioscreen_sodium
2626.835616
vioscreen_sorbitol
0.477506789
vioscreen_srvid
20204.0
vioscreen_starch
31.11252408
vioscreen_started
7/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.20180865
vioscreen_sweet_servings
0.14247
vioscreen_tagatose
0.162465751
vioscreen_tfa161t
0.02608219
vioscreen_tfa181t
0.716904146
vioscreen_tfa182t
0.17783562600000002
vioscreen_tgrain
0.757479566
vioscreen_thiamin
0.9353972970000001
vioscreen_threonin
2.4191230669999997
vioscreen_time
16.0
vioscreen_totaltfa
0.9256438790000001
vioscreen_totcla
0.069095894
vioscreen_totfolat
346.53362589999995
vioscreen_totsugar
52.14906357
vioscreen_tryptoph
0.596794484
vioscreen_tyrosine
1.920438249
vioscreen_user_id
20204.0
vioscreen_v_drkgr
0.77843837
vioscreen_v_orange
0.492657513
vioscreen_v_other
2.222821965
vioscreen_v_potato
0.280383552
vioscreen_v_starcy
0.8272054590000001
vioscreen_v_tomato
0.21819177899999997
vioscreen_v_total
4.819863348
vioscreen_valine
2.920383401
vioscreen_veg5_day
8.9
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.6
vioscreen_visit
1.0
vioscreen_vita_iu
18217.709590000002
vioscreen_vita_rae
993.4590752999999
vioscreen_vita_re
1887.8816780000002
vioscreen_vitb12
2.552082219
vioscreen_vitb6
1.6455069759999998
vioscreen_vitc
156.6994221
vioscreen_vitd
1.8944932909999999
vioscreen_vitd2
0.003178082
vioscreen_vitd3
1.8913973869999998
vioscreen_vitd_iu
75.77973165
vioscreen_vite_iu
15.36871388
vioscreen_vitk
255.82746150000003
vioscreen_water
2887.969863
vioscreen_weight
Not provided
vioscreen_wgrain
0.044219176
vioscreen_whole_grain_servings
0.05279
vioscreen_xylitol
0.029835617000000002
vioscreen_zinc
8.58238308
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never