American Gut Project; 10317.000029219
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634001
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:13Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029219
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29219
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
22.24
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-15
collection month
July
collection season
Summer
collection time
08:00
collection_timestamp
2015-07-15 08:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
2.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Not provided
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
27a932b60d30fff1d216b54b9df34956505e9ad36d201d8a714c18a0fe8c147ac6d784a1b88976877f338540edb82bc189aaf1197782618586b8acd014986f87
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
30.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-81.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029219
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Not provided
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a89a11d1349693b2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.055643839
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.948575958
vioscreen_addsugar
20.81567316
vioscreen_adsugtot
17.28852071
vioscreen_age
215.0
vioscreen_alanine
2.256547651
vioscreen_alcohol
0.845643846
vioscreen_alcohol_servings
0.055639999999999995
vioscreen_alphacar
4260.511301
vioscreen_alphtoce
18.071372
vioscreen_alphtoco
15.03353355
vioscreen_arginine
3.311752863
vioscreen_ash
22.36041176
vioscreen_aspartam
0.0
vioscreen_aspartic
5.368903842000001
vioscreen_avcarb
212.67326630000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
21030.03699
vioscreen_betacryp
331.74441349999995
vioscreen_betaine
231.74777400000002
vioscreen_betatoco
0.486465789
vioscreen_biochana
0.022301368
vioscreen_bmi
Not provided
vioscreen_caffeine
47.58997218
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.2554
vioscreen_calcium_servings
2.7997799999999997
vioscreen_calories
1673.954281
vioscreen_carbo
253.08362590000002
vioscreen_cholest
49.468247
vioscreen_choline
245.32099739999998
vioscreen_clac9t11
0.018904109
vioscreen_clat10c12
0.0041917809999999995
vioscreen_copper
1.9802739390000001
vioscreen_coumest
0.180493143
vioscreen_cystine
0.80523297
vioscreen_d_cheese
0.229589049
vioscreen_d_milk
0.025808219
vioscreen_d_tot_soym
0.255397285
vioscreen_d_total
0.255397285
vioscreen_d_yogurt
0.0
vioscreen_daidzein
6.675286949
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.424000027
vioscreen_discfat_oil
30.38830533
vioscreen_discfat_sol
12.53284996
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001342466
vioscreen_f_citmlb
0.73506846
vioscreen_f_nj_citmlb
0.41087671600000003
vioscreen_f_nj_other
1.264575195
vioscreen_f_nj_total
1.675479586
vioscreen_f_other
1.3382738090000001
vioscreen_f_total
2.073397535
vioscreen_fat
55.90480522
vioscreen_fiber
40.40862853
vioscreen_fibh2o
10.2516441
vioscreen_fibinso
30.14646832
vioscreen_finished
7/14/15
vioscreen_fish_servings
0.10904000000000001
vioscreen_fol_deqv
606.4018836
vioscreen_fol_nat
441.7609589
vioscreen_fol_syn
96.79013271
vioscreen_formontn
0.0038356159999999996
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.5
vioscreen_frtsumm
4.1
vioscreen_fructose
28.02044093
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.071342573
vioscreen_g_total
6.787834439
vioscreen_g_whl
3.716548387
vioscreen_galactos
0.180383552
vioscreen_gammtoco
9.762574914
vioscreen_gender
false
vioscreen_genistn
9.025153842
vioscreen_glac
98.94052868
vioscreen_gltc
113.32185359999998
vioscreen_glucose
27.65254441
vioscreen_glutamic
11.42947881
vioscreen_glycine
2.150492963
vioscreen_glycitn
1.6453424319999999
vioscreen_grams
3048.697603
vioscreen_hei2010_dairy
1.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
80.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.5
vioscreen_hei_milk
1.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.2690137890000002
vioscreen_inositol
0.23389041800000002
vioscreen_iron
19.04907026
vioscreen_isoleuc
2.126465847
vioscreen_isomalt
0.0
vioscreen_joules
7003.820548000001
vioscreen_juice_servings
0.79584
vioscreen_lactitol
0.0
vioscreen_lactose
0.518164397
vioscreen_legumes
0.462493186
vioscreen_leucine
3.6599448839999997
vioscreen_line_gi
550.3681507
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
15454.73836
vioscreen_lycopene
10756.757529999999
vioscreen_lysine
2.598246535
vioscreen_m_egg
0.147205489
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.06210958900000001
vioscreen_m_frank
0.021424657000000003
vioscreen_m_meat
0.11454794900000001
vioscreen_m_mpf
0.198109582
vioscreen_m_nutsd
1.090794477
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.70115068
vioscreen_magnes
447.15809079999997
vioscreen_maltitol
0.0
vioscreen_maltose
4.721671327
vioscreen_mangan
6.751971854
vioscreen_mannitol
0.7637534779999999
vioscreen_methhis3
0.8718903840000001
vioscreen_methion
0.794493124
vioscreen_mfa141
0.010958905
vioscreen_mfa161
0.514109656
vioscreen_mfa181
24.12645816
vioscreen_mfa201
0.222657546
vioscreen_mfa221
0.01720548
vioscreen_mfatot
25.04517872
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.52449299
vioscreen_nccglbr
162.7887949
vioscreen_nccglgr
113.87269909999999
vioscreen_niacin
17.48185734
vioscreen_niacineq
28.23535691
vioscreen_nitrogen
9.398272956
vioscreen_non_fried_fish_servings
0.10904000000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.433452282
vioscreen_oxalic
628.7863442
vioscreen_oxalicm
616.0117723
vioscreen_pantothe
4.515014314
vioscreen_pectins
6.606656009
vioscreen_pfa182
13.70761986
vioscreen_pfa183
1.4220273369999998
vioscreen_pfa184
0.000438356
vioscreen_pfa204
0.01758904
vioscreen_pfa205
0.004493151
vioscreen_pfa225
0.001041096
vioscreen_pfa226
0.00539726
vioscreen_pfatot
15.20161735
vioscreen_phenylal
2.472712101
vioscreen_phosphor
1116.92286
vioscreen_phytic
1240.8097599999999
vioscreen_pinitol
0.038328766
vioscreen_potass
3770.5363009999996
vioscreen_procdate
10/28/15
vioscreen_proline
3.381260702
vioscreen_protanim
5.758575021
vioscreen_protein
56.44008455
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
50.68244863
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
293.0
vioscreen_retinol
114.58485659999998
vioscreen_rgrain
3.544520882
vioscreen_ribofla
1.2876711490000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.6214
vioscreen_satoco
3.3534246580000002
vioscreen_selenium
89.97542808
vioscreen_serine
2.5932873030000003
vioscreen_sfa100
0.085205475
vioscreen_sfa120
0.180465782
vioscreen_sfa140
0.49569861
vioscreen_sfa160
7.3856980420000005
vioscreen_sfa170
0.027945208
vioscreen_sfa180
2.470575035
vioscreen_sfa200
0.181753456
vioscreen_sfa220
0.220164385
vioscreen_sfa40
0.108301367
vioscreen_sfa60
0.044767124000000005
vioscreen_sfa80
0.053068495
vioscreen_sfatot
11.47528494
vioscreen_sodium
3824.79863
vioscreen_sorbitol
0.88583558
vioscreen_srvid
20149.0
vioscreen_starch
106.96830049999998
vioscreen_started
7/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.64729238
vioscreen_sweet_servings
0.15705
vioscreen_tagatose
0.185178072
vioscreen_tfa161t
0.010438356999999999
vioscreen_tfa181t
1.066027498
vioscreen_tfa182t
0.207479461
vioscreen_tgrain
7.121533202999999
vioscreen_thiamin
1.6852880190000001
vioscreen_threonin
1.9286574269999999
vioscreen_time
40.0
vioscreen_totaltfa
1.413123395
vioscreen_totcla
0.023506849
vioscreen_totfolat
538.5510702
vioscreen_totsugar
85.47129709
vioscreen_tryptoph
0.6458630710000001
vioscreen_tyrosine
1.6086850519999998
vioscreen_user_id
20149.0
vioscreen_v_drkgr
1.0633972170000001
vioscreen_v_orange
1.023671189
vioscreen_v_other
1.732630231
vioscreen_v_potato
0.368246585
vioscreen_v_starcy
0.12227397599999999
vioscreen_v_tomato
0.654520531
vioscreen_v_total
4.965013311
vioscreen_valine
2.453040889
vioscreen_veg5_day
8.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
9.9
vioscreen_visit
1.0
vioscreen_vita_iu
39258.545210000004
vioscreen_vita_rae
2058.4328769999997
vioscreen_vita_re
4002.281507
vioscreen_vitb12
0.760246632
vioscreen_vitb6
2.256986602
vioscreen_vitc
239.31508990000003
vioscreen_vitd
1.049287644
vioscreen_vitd2
0.000191781
vioscreen_vitd3
1.049123268
vioscreen_vitd_iu
41.97150578
vioscreen_vite_iu
23.51978275
vioscreen_vitk
683.9722174999999
vioscreen_water
2693.194692
vioscreen_weight
Not provided
vioscreen_wgrain
3.577041083
vioscreen_whole_grain_servings
3.71655
vioscreen_xylitol
0.048630142
vioscreen_zinc
9.866657079
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily