American Gut Project; 10317.000022673
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632564
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022673
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
22673
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
19.42
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Not provided
collection date
01/09/2015
collection month
January
collection season
Winter
collection time
10:40
collection_timestamp
2015-01-09 10:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
2136.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
be0288a96fa3c45f17369e4fefbd57f0c8d482bfe6c53a323a09d156f18ad5d2d1f5a9183db4e2175be314bd2d1ecd41a9b73161e4a57372cfe76936e5ea3319
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
39.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-105.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022673
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Daily
survey_id
fb6958d746c636dd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.40572601700000005
vioscreen_a_cal
48.19452055
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.04224703
vioscreen_addsugar
26.29008187
vioscreen_adsugtot
23.52660263
vioscreen_age
215.0
vioscreen_alanine
2.7579452719999997
vioscreen_alcohol
6.1389588239999995
vioscreen_alcohol_servings
0.40573000000000004
vioscreen_alphacar
1980.8333899999998
vioscreen_alphtoce
11.29780608
vioscreen_alphtoco
10.35454837
vioscreen_arginine
3.6073697019999997
vioscreen_ash
12.29021966
vioscreen_aspartam
0.0
vioscreen_aspartic
5.359014475
vioscreen_avcarb
131.7181079
vioscreen_bcodeid
Not provided
vioscreen_betacar
6086.033562
vioscreen_betacryp
51.30931614
vioscreen_betaine
67.11005458
vioscreen_betatoco
0.349726011
vioscreen_biochana
0.00460274
vioscreen_bmi
Not provided
vioscreen_caffeine
94.5968536
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.75644
vioscreen_calcium_servings
1.6571200000000001
vioscreen_calories
1483.74863
vioscreen_carbo
148.60941780000002
vioscreen_cholest
152.691235
vioscreen_choline
222.168536
vioscreen_clac9t11
0.096246557
vioscreen_clat10c12
0.021095891000000002
vioscreen_copper
1.093726338
vioscreen_coumest
0.02830137
vioscreen_cystine
0.72030138
vioscreen_d_cheese
0.15890411
vioscreen_d_milk
0.45361645799999994
vioscreen_d_tot_soym
0.7835890679999999
vioscreen_d_total
0.7564383729999999
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
1.44263013
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.254219201
vioscreen_discfat_oil
33.50389287
vioscreen_discfat_sol
25.06991652
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000767123
vioscreen_f_citmlb
0.23224656600000002
vioscreen_f_nj_citmlb
0.22772601399999998
vioscreen_f_nj_other
0.5443014070000001
vioscreen_f_nj_total
0.7720547609999999
vioscreen_f_other
0.866602733
vioscreen_f_total
1.098849195
vioscreen_fat
73.63274294
vioscreen_fiber
16.85654966
vioscreen_fibh2o
4.054055075
vioscreen_fibinso
12.83808326
vioscreen_finished
1/8/15
vioscreen_fish_servings
2.38462
vioscreen_fol_deqv
241.1606378
vioscreen_fol_nat
167.878628
vioscreen_fol_syn
43.04822346
vioscreen_formontn
0.0023287670000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.4
vioscreen_frtsumm
2.2
vioscreen_fructose
15.99572587
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.749342493
vioscreen_g_total
3.476766842
vioscreen_g_whl
1.727424684
vioscreen_galactos
0.25380821800000003
vioscreen_gammtoco
7.822303082
vioscreen_gender
false
vioscreen_genistn
1.73454824
vioscreen_glac
59.12040882
vioscreen_gltc
65.53835616
vioscreen_glucose
14.63873876
vioscreen_glutamic
10.65605402
vioscreen_glycine
2.551096292
vioscreen_glycitn
0.253123286
vioscreen_grams
1679.8625
vioscreen_hei2010_dairy
4.1
vioscreen_hei2010_empty_calories
18.8
vioscreen_hei2010_fatty_acids
7.2
vioscreen_hei2010_fruit
4.6
vioscreen_hei2010_greens_beans
3.5
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.9
vioscreen_hei2010_veg
4.5
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.6
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.6
vioscreen_hei_score
74.8
vioscreen_hei_sodium
4.0
vioscreen_hei_sol_fat_alc_add_sug
17.2
vioscreen_hei_veg
4.5
vioscreen_hei_whl_grains
3.9
vioscreen_height
Not provided
vioscreen_histidin
1.518136806
vioscreen_inositol
0.082027393
vioscreen_iron
7.828549069
vioscreen_isoleuc
2.434712282
vioscreen_isomalt
0.0
vioscreen_joules
6208.00137
vioscreen_juice_servings
0.65367
vioscreen_lactitol
0.0
vioscreen_lactose
8.052794574
vioscreen_legumes
0.03517808
vioscreen_leucine
4.261178296000001
vioscreen_line_gi
276.52666949999997
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
2593.848801
vioscreen_lycopene
1903.215925
vioscreen_lysine
3.7016434339999997
vioscreen_m_egg
0.15641095900000002
vioscreen_m_fish_hi
0.765287718
vioscreen_m_fish_lo
0.593616433
vioscreen_m_frank
0.16219177199999998
vioscreen_m_meat
0.7229862579999999
vioscreen_m_mpf
3.224958864
vioscreen_m_nutsd
2.259150591
vioscreen_m_organ
0.0
vioscreen_m_poult
0.980876766
vioscreen_m_soy
0.123506844
vioscreen_magnes
287.61521830000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.436685139
vioscreen_mangan
3.918767056
vioscreen_mannitol
0.259972601
vioscreen_methhis3
11.94147849
vioscreen_methion
1.2603563279999999
vioscreen_mfa141
0.021671235
vioscreen_mfa161
0.850082105
vioscreen_mfa181
31.54561216
vioscreen_mfa201
0.453726071
vioscreen_mfa221
0.123890414
vioscreen_mfatot
33.23312554
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.34772648
vioscreen_nccglbr
92.1604238
vioscreen_nccglgr
64.46496147
vioscreen_niacin
17.03427467
vioscreen_niacineq
27.36739352
vioscreen_nitrogen
9.241616278
vioscreen_non_fried_fish_servings
2.38462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.643342319
vioscreen_oxalic
206.62378
vioscreen_oxalicm
199.3775471
vioscreen_pantothe
3.302520668
vioscreen_pectins
2.497972629
vioscreen_pfa182
11.92408096
vioscreen_pfa183
1.248054734
vioscreen_pfa184
0.028958906
vioscreen_pfa204
0.081726027
vioscreen_pfa205
0.104246594
vioscreen_pfa225
0.045095893
vioscreen_pfa226
0.21764382100000002
vioscreen_pfatot
13.73698764
vioscreen_phenylal
2.479945185
vioscreen_phosphor
938.6123287999999
vioscreen_phytic
684.203125
vioscreen_pinitol
0.011013698999999998
vioscreen_potass
2144.08476
vioscreen_procdate
10/28/15
vioscreen_proline
3.271533872
vioscreen_protanim
33.33602579
vioscreen_protein
55.98348673
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.6450396
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
646.0
vioscreen_retinol
209.3510916
vioscreen_rgrain
1.764520515
vioscreen_ribofla
0.985972616
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.05964
vioscreen_satoco
0.014931506
vioscreen_selenium
91.08953339
vioscreen_serine
2.620876699
vioscreen_sfa100
0.506958844
vioscreen_sfa120
0.685178072
vioscreen_sfa140
1.940767304
vioscreen_sfa160
11.67520468
vioscreen_sfa170
0.09323287300000001
vioscreen_sfa180
4.86890518
vioscreen_sfa200
0.277890349
vioscreen_sfa220
0.379150641
vioscreen_sfa40
0.614000085
vioscreen_sfa60
0.37747944899999997
vioscreen_sfa80
0.281534273
vioscreen_sfatot
22.00337115
vioscreen_sodium
2307.151541
vioscreen_sorbitol
0.562383573
vioscreen_srvid
16806.0
vioscreen_starch
56.27955372
vioscreen_started
1/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.14345168
vioscreen_sweet_servings
0.47547
vioscreen_tagatose
2.66416417
vioscreen_tfa161t
0.022520548999999997
vioscreen_tfa181t
1.139890321
vioscreen_tfa182t
0.295342495
vioscreen_tgrain
3.85975392
vioscreen_thiamin
0.882602807
vioscreen_threonin
2.147561938
vioscreen_time
31.0
vioscreen_totaltfa
1.5059451590000001
vioscreen_totcla
0.11849315099999999
vioscreen_totfolat
210.9266909
vioscreen_totsugar
63.67543343
vioscreen_tryptoph
0.6193149929999999
vioscreen_tyrosine
1.946931687
vioscreen_user_id
16806.0
vioscreen_v_drkgr
0.17421917899999997
vioscreen_v_orange
0.40816437200000005
vioscreen_v_other
0.46249314399999997
vioscreen_v_potato
0.18909590199999998
vioscreen_v_starcy
0.022054795
vioscreen_v_tomato
0.164767122
vioscreen_v_total
1.420794761
vioscreen_valine
2.788959326
vioscreen_veg5_day
2.6
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
2.8
vioscreen_visit
1.0
vioscreen_vita_iu
12535.0411
vioscreen_vita_rae
801.1947774
vioscreen_vita_re
1393.035873
vioscreen_vitb12
2.6972602739999996
vioscreen_vitb6
1.4118628930000001
vioscreen_vitc
61.09805758
vioscreen_vitd
5.530165079
vioscreen_vitd2
0.070465752
vioscreen_vitd3
5.459671982000001
vioscreen_vitd_iu
221.20660319999996
vioscreen_vite_iu
15.44827296
vioscreen_vitk
119.18290879999999
vioscreen_water
1388.1858730000001
vioscreen_weight
Not provided
vioscreen_wgrain
2.095260495
vioscreen_whole_grain_servings
1.7274200000000002
vioscreen_xylitol
0.022493153
vioscreen_zinc
7.005205212000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)