American Gut Project; 10317.000031449
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634310
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031449
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031449
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1955.0
bmi
31.09
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-07-31
collection month
July
collection season
Summer
collection time
10:15
collection_timestamp
2015-07-31 10:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
Japan
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
124.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
528f77593e282a349305002d636ec3deb12a3685326d78b6840da236b7ed3a257a42b7abb2d1209b55dc02fadb5248b23837dca16a48795aac0901ffc0b6a01c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Not sure
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031449
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
e3489b534a9d2d87
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.8252877009999999
vioscreen_a_cal
101.04334329999999
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.005616572
vioscreen_addsugar
14.80421929
vioscreen_adsugtot
13.02528762
vioscreen_age
215.0
vioscreen_alanine
1.984082198
vioscreen_alcohol
12.76372539
vioscreen_alcohol_servings
0.82529
vioscreen_alphacar
49.13758027
vioscreen_alphtoce
5.445725532000001
vioscreen_alphtoco
4.925890612
vioscreen_arginine
2.233451948
vioscreen_ash
13.20906732
vioscreen_aspartam
0.0
vioscreen_aspartic
3.848000054
vioscreen_avcarb
54.08076841
vioscreen_bcodeid
Not provided
vioscreen_betacar
1143.249486
vioscreen_betacryp
17.85737238
vioscreen_betaine
19.444465700000002
vioscreen_betatoco
0.12005478300000001
vioscreen_biochana
0.001205479
vioscreen_bmi
Not provided
vioscreen_caffeine
245.41339900000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.6366
vioscreen_calcium_servings
2.6826
vioscreen_calories
1041.205479
vioscreen_carbo
64.22298801
vioscreen_cholest
238.6499358
vioscreen_choline
225.29385699999997
vioscreen_clac9t11
0.121397264
vioscreen_clat10c12
0.022493151
vioscreen_copper
0.5473698029999999
vioscreen_coumest
0.18024657800000002
vioscreen_cystine
0.458986214
vioscreen_d_cheese
0.983369927
vioscreen_d_milk
0.279013709
vioscreen_d_tot_soym
1.6366027
vioscreen_d_total
1.6366027
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.188821913
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.993040989
vioscreen_discfat_oil
13.84312259
vioscreen_discfat_sol
36.02358733
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000547945
vioscreen_f_citmlb
0.026547947000000002
vioscreen_f_nj_citmlb
0.024027398999999998
vioscreen_f_nj_other
0.961260234
vioscreen_f_nj_total
0.9852876009999999
vioscreen_f_other
0.961260234
vioscreen_f_total
0.987808102
vioscreen_fat
61.05446276
vioscreen_fiber
10.14246509
vioscreen_fibh2o
4.476136424
vioscreen_fibinso
5.739178216
vioscreen_finished
7/30/15
vioscreen_fish_servings
0.64423
vioscreen_fol_deqv
145.21126930000003
vioscreen_fol_nat
136.1484161
vioscreen_fol_syn
5.32304119
vioscreen_formontn
0.000438356
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.0
vioscreen_fructose
8.86457553
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.320767128
vioscreen_g_total
0.39443836
vioscreen_g_whl
0.07367123099999999
vioscreen_galactos
0.521643819
vioscreen_gammtoco
4.630082473
vioscreen_gender
false
vioscreen_genistn
0.06394520599999999
vioscreen_glac
16.41060306
vioscreen_gltc
17.89065577
vioscreen_glucose
6.275067557000001
vioscreen_glutamic
8.243863709
vioscreen_glycine
1.675643795
vioscreen_glycitn
0.000027399999999999995
vioscreen_grams
2965.1695210000003
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
8.7
vioscreen_hei2010_fatty_acids
0.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.8
vioscreen_hei2010_veg
4.2
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
56.0
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
2.9
vioscreen_hei_veg
4.2
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.2523287840000001
vioscreen_inositol
0.065205483
vioscreen_iron
3.904548039
vioscreen_isoleuc
2.1314795930000003
vioscreen_isomalt
0.0
vioscreen_joules
4356.401712
vioscreen_juice_servings
0.0050100000000000006
vioscreen_lactitol
0.0
vioscreen_lactose
10.05775364
vioscreen_legumes
0.0
vioscreen_leucine
3.641205252
vioscreen_line_gi
80.19235338
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
1243.548373
vioscreen_lycopene
1282.952397
vioscreen_lysine
3.32884973
vioscreen_m_egg
0.509369858
vioscreen_m_fish_hi
0.069315066
vioscreen_m_fish_lo
0.297835635
vioscreen_m_frank
0.505506834
vioscreen_m_meat
0.924931524
vioscreen_m_mpf
1.9510683659999999
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.153506856
vioscreen_m_soy
0.000027399999999999995
vioscreen_magnes
155.74974319999998
vioscreen_maltitol
0.0
vioscreen_maltose
0.569726019
vioscreen_mangan
0.924082299
vioscreen_mannitol
0.48334237700000005
vioscreen_methhis3
6.844355335
vioscreen_methion
1.0743561209999999
vioscreen_mfa141
0.112602736
vioscreen_mfa161
1.150958921
vioscreen_mfa181
20.11169735
vioscreen_mfa201
0.218794522
vioscreen_mfa221
0.003369863
vioscreen_mfatot
21.84482288
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
4.925890612
vioscreen_nccglbr
33.08446864
vioscreen_nccglgr
23.14306774
vioscreen_niacin
7.829672116
vioscreen_niacineq
15.35797169
vioscreen_nitrogen
6.9849308379999995
vioscreen_non_fried_fish_servings
0.64423
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.054904133
vioscreen_oxalic
64.50978168
vioscreen_oxalicm
65.16742295
vioscreen_pantothe
4.033451948
vioscreen_pectins
1.872794541
vioscreen_pfa182
7.748904377000001
vioscreen_pfa183
0.9947397729999999
vioscreen_pfa184
0.002684932
vioscreen_pfa204
0.089397263
vioscreen_pfa205
0.013890411
vioscreen_pfa225
0.010575343000000001
vioscreen_pfa226
0.033260272
vioscreen_pfatot
8.964631047000001
vioscreen_phenylal
2.007753471
vioscreen_phosphor
825.1543664
vioscreen_phytic
207.7544949
vioscreen_pinitol
0.0
vioscreen_potass
1602.8145550000002
vioscreen_procdate
10/28/15
vioscreen_proline
3.193068413
vioscreen_protanim
36.48454891
vioscreen_protein
43.60652023
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
7.115836366
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
246.0
vioscreen_retinol
305.4505779
vioscreen_rgrain
0.294465784
vioscreen_ribofla
1.408794581
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.0429899999999999
vioscreen_satoco
0.0
vioscreen_selenium
53.23249679
vioscreen_serine
2.237068573
vioscreen_sfa100
0.689095902
vioscreen_sfa120
0.7579451890000001
vioscreen_sfa140
2.996520494
vioscreen_sfa160
12.67391642
vioscreen_sfa170
0.11449316400000001
vioscreen_sfa180
5.233069015
vioscreen_sfa200
0.11493151900000001
vioscreen_sfa220
0.132328765
vioscreen_sfa40
0.820328637
vioscreen_sfa60
0.47665752299999997
vioscreen_sfa80
0.325561649
vioscreen_sfatot
24.86893461
vioscreen_sodium
1723.3113010000002
vioscreen_sorbitol
0.743753344
vioscreen_srvid
20279.0
vioscreen_starch
5.458355295
vioscreen_started
7/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.5200008
vioscreen_sweet_servings
0.07671
vioscreen_tagatose
2.8124110389999997
vioscreen_tfa161t
0.110849313
vioscreen_tfa181t
0.9623561079999999
vioscreen_tfa182t
0.250219183
vioscreen_tgrain
0.385835663
vioscreen_thiamin
0.498164389
vioscreen_threonin
1.704027317
vioscreen_time
26.0
vioscreen_totaltfa
1.375013628
vioscreen_totcla
0.144027407
vioscreen_totfolat
141.47142549999998
vioscreen_totsugar
40.06402772
vioscreen_tryptoph
0.45268492
vioscreen_tyrosine
1.724684958
vioscreen_user_id
20279.0
vioscreen_v_drkgr
0.41599999
vioscreen_v_orange
0.0
vioscreen_v_other
0.342191806
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.197945205
vioscreen_v_total
0.956137127
vioscreen_valine
2.517561236
vioscreen_veg5_day
3.3
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
1.9
vioscreen_visit
1.0
vioscreen_vita_iu
2979.676027
vioscreen_vita_rae
403.5131849
vioscreen_vita_re
501.57555650000006
vioscreen_vitb12
2.8124658869999997
vioscreen_vitb6
0.733013832
vioscreen_vitc
40.6009284
vioscreen_vitd
4.113643448
vioscreen_vitd2
0.000657534
vioscreen_vitd3
4.113040788
vioscreen_vitd_iu
164.5457379
vioscreen_vite_iu
7.3164932039999995
vioscreen_vitk
96.69614726
vioscreen_water
2778.630822
vioscreen_weight
Not provided
vioscreen_wgrain
0.091369859
vioscreen_whole_grain_servings
0.07367
vioscreen_xylitol
0.024191781000000002
vioscreen_zinc
6.128520976
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never