American Gut Project; 10317.000008966
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632326
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-09T19:40:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000008966
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000008966
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by an alternative medicine practitioner
birth year
1979.0
bmi
24.51
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-29
collection month
January
collection season
Winter
collection time
08:30
collection_timestamp
2015-01-29 08:30
consume_animal_products_abx
Yes
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1606.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
aad772aacedc0a9b68186dff7f20833359398c124251c68e6934226d6d6fe353ebfed57634e33dd1871556c87d6f1b06bc182a26fefd2dd9df6369e61916a172
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-104.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000008966
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
2a580cfaf910e131
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.453917788
vioscreen_a_cal
56.30835831
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.76241037
vioscreen_addsugar
60.38164598
vioscreen_adsugtot
52.29482021
vioscreen_age
215.0
vioscreen_alanine
5.91687714
vioscreen_alcohol
7.067479131
vioscreen_alcohol_servings
0.45392
vioscreen_alphacar
1872.5946920000001
vioscreen_alphtoce
18.71350599
vioscreen_alphtoco
16.11895735
vioscreen_arginine
6.665725332
vioscreen_ash
25.44761344
vioscreen_aspartam
0.0
vioscreen_aspartic
10.68602646
vioscreen_avcarb
144.42996580000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
18044.06712
vioscreen_betacryp
211.59105309999998
vioscreen_betaine
138.2056935
vioscreen_betatoco
0.41630140299999996
vioscreen_biochana
0.00890411
vioscreen_bmi
Not provided
vioscreen_caffeine
265.8054366
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
2.36025
vioscreen_calcium_servings
4.53003
vioscreen_calories
2460.053425
vioscreen_carbo
168.2820634
vioscreen_cholest
855.5804795
vioscreen_choline
819.3144692000001
vioscreen_clac9t11
0.21810957
vioscreen_clat10c12
0.055095882
vioscreen_copper
1.216054838
vioscreen_coumest
0.158164382
vioscreen_cystine
1.41597265
vioscreen_d_cheese
1.402082219
vioscreen_d_milk
0.208410937
vioscreen_d_tot_soym
2.360246716
vioscreen_d_total
2.360246716
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.42619177399999997
vioscreen_database
NDSR - V44
vioscreen_delttoco
5.991835001
vioscreen_discfat_oil
43.84010863
vioscreen_discfat_sol
70.70361729999999
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.051506847
vioscreen_f_nj_citmlb
0.048191780999999996
vioscreen_f_nj_other
0.407260299
vioscreen_f_nj_total
0.45553425799999997
vioscreen_f_other
0.407260299
vioscreen_f_total
0.458821921
vioscreen_fat
148.01989509999999
vioscreen_fiber
23.84166845
vioscreen_fibh2o
5.574904685
vioscreen_fibinso
18.44766829
vioscreen_finished
2/3/15
vioscreen_fish_servings
0.46212
vioscreen_fol_deqv
494.04982879999994
vioscreen_fol_nat
475.75629280000004
vioscreen_fol_syn
10.75334305
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.9
vioscreen_fructose
15.10778307
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.670383568
vioscreen_g_total
0.825808172
vioscreen_g_whl
0.155452049
vioscreen_galactos
1.397479415
vioscreen_gammtoco
23.70159461
vioscreen_gender
false
vioscreen_genistn
0.48813702299999995
vioscreen_glac
52.77413849
vioscreen_gltc
57.75959439
vioscreen_glucose
18.824192
vioscreen_glutamic
19.51350599
vioscreen_glycine
4.983999759
vioscreen_glycitn
0.068219182
vioscreen_grams
2573.012842
vioscreen_hei2010_dairy
7.4
vioscreen_hei2010_empty_calories
10.4
vioscreen_hei2010_fatty_acids
2.6
vioscreen_hei2010_fruit
1.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
54.8
vioscreen_hei2010_sea_foods_plant_protiens
3.8
vioscreen_hei2010_sodium
1.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.3
vioscreen_hei2010_whole_grains
0.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.2
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.4
vioscreen_hei_non_juice_frt
2.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.2
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
9.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
3.28238308
vioscreen_inositol
0.145041082
vioscreen_iron
14.52983599
vioscreen_isoleuc
5.441725974
vioscreen_isomalt
0.0
vioscreen_joules
10292.86096
vioscreen_juice_servings
0.00655
vioscreen_lactitol
0.0
vioscreen_lactose
14.67632973
vioscreen_legumes
0.0
vioscreen_leucine
9.276573871
vioscreen_line_gi
261.13441780000005
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
19052.28493
vioscreen_lycopene
3535.080137
vioscreen_lysine
8.647124492
vioscreen_m_egg
3.0549864889999996
vioscreen_m_fish_hi
0.065863016
vioscreen_m_fish_lo
0.197589049
vioscreen_m_frank
0.138520552
vioscreen_m_meat
5.6472876979999995
vioscreen_m_mpf
6.09197279
vioscreen_m_nutsd
1.192328801
vioscreen_m_organ
0.0
vioscreen_m_poult
0.04279452
vioscreen_m_soy
0.034876711
vioscreen_magnes
389.7466182
vioscreen_maltitol
0.0
vioscreen_maltose
3.094849302
vioscreen_mangan
4.326219365
vioscreen_mannitol
0.273616425
vioscreen_methhis3
23.51668718
vioscreen_methion
2.831479425
vioscreen_mfa141
0.371287683
vioscreen_mfa161
2.5153425659999997
vioscreen_mfa181
46.62977847
vioscreen_mfa201
0.476767135
vioscreen_mfa221
0.011479452
vioscreen_mfatot
50.44948095
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
16.11895735
vioscreen_nccglbr
112.2673373
vioscreen_nccglgr
78.5270762
vioscreen_niacin
20.07331576
vioscreen_niacineq
39.02898384
vioscreen_nitrogen
18.48238442
vioscreen_non_fried_fish_servings
0.46212
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.570328219
vioscreen_oxalic
944.4663527
vioscreen_oxalicm
967.3238014000001
vioscreen_pantothe
7.809698067999999
vioscreen_pectins
4.455096854
vioscreen_pfa182
26.83443654
vioscreen_pfa183
3.453177841
vioscreen_pfa184
0.0035342459999999996
vioscreen_pfa204
0.328520558
vioscreen_pfa205
0.01750685
vioscreen_pfa225
0.019369861999999998
vioscreen_pfa226
0.077698621
vioscreen_pfatot
30.81674337
vioscreen_phenylal
5.249478944
vioscreen_phosphor
1795.031336
vioscreen_phytic
371.0246147
vioscreen_pinitol
0.022054795
vioscreen_potass
4023.879452
vioscreen_procdate
10/28/15
vioscreen_proline
6.989588238
vioscreen_protanim
91.61747646
vioscreen_protein
114.63711470000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.00802387
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
572.0
vioscreen_retinol
609.1672089
vioscreen_rgrain
0.743479439
vioscreen_ribofla
2.856794467
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.94959
vioscreen_satoco
0.0
vioscreen_selenium
155.66400900000002
vioscreen_serine
5.8755344339999995
vioscreen_sfa100
1.07200008
vioscreen_sfa120
1.4516437690000001
vioscreen_sfa140
4.873726121
vioscreen_sfa160
28.51203446
vioscreen_sfa170
0.345972599
vioscreen_sfa180
12.64627435
vioscreen_sfa200
0.30038356
vioscreen_sfa220
0.31230136399999997
vioscreen_sfa40
1.200986261
vioscreen_sfa60
0.678109616
vioscreen_sfa80
0.487369861
vioscreen_sfatot
52.62010916
vioscreen_sodium
4550.376027
vioscreen_sorbitol
0.46709586399999997
vioscreen_srvid
17060.0
vioscreen_starch
26.06216556
vioscreen_started
2/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.56704035
vioscreen_sweet_servings
0.80166
vioscreen_tagatose
6.251561831
vioscreen_tfa161t
0.146904107
vioscreen_tfa181t
3.272657588
vioscreen_tfa182t
0.6945479720000001
vioscreen_tgrain
0.843342402
vioscreen_thiamin
1.260547878
vioscreen_threonin
4.765725332
vioscreen_time
20.0
vioscreen_totaltfa
4.125533765
vioscreen_totcla
0.272739734
vioscreen_totfolat
486.50950339999997
vioscreen_totsugar
97.996875
vioscreen_tryptoph
1.137205526
vioscreen_tyrosine
4.2704660080000005
vioscreen_user_id
17060.0
vioscreen_v_drkgr
1.354273966
vioscreen_v_orange
0.582794524
vioscreen_v_other
1.587314888
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.743013732
vioscreen_v_tomato
0.366739728
vioscreen_v_total
4.63427333
vioscreen_valine
6.360219125
vioscreen_veg5_day
9.7
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.3
vioscreen_visit
1.0
vioscreen_vita_iu
33839.67671
vioscreen_vita_rae
2199.680651
vioscreen_vita_re
3790.194521
vioscreen_vitb12
7.478246067000001
vioscreen_vitb6
2.234849235
vioscreen_vitc
153.2237372
vioscreen_vitd
8.092683808
vioscreen_vitd2
0.001835616
vioscreen_vitd3
8.090903252999999
vioscreen_vitd_iu
323.7073523
vioscreen_vite_iu
24.03405126
vioscreen_vitk
741.1156678
vioscreen_water
2140.881678
vioscreen_weight
Not provided
vioscreen_wgrain
0.099863016
vioscreen_whole_grain_servings
0.15545
vioscreen_xylitol
0.038767125
vioscreen_zinc
18.09287511
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
75.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)