American Gut Project; 10317.000033797
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634374
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:35Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033797
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
20s
age years
24.0
age_corrected
24.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033797
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1991.0
bmi
24.62
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-22
collection month
September
collection season
Fall
collection time
08:15
collection_timestamp
2015-09-22 08:15
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
8.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
fa3f5540f7c889f1b57a489b1690466e49a7eae23d0fd486f554cb71baf9cd8525b746f813704c2db16d46987d3a2848277c38d624b586bc78a8541c97019df1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-73.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000033797
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d062f6ab3248c014
teethbrushing_frequency
Occasionally (1-2 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.469013538
vioscreen_a_cal
293.6984375
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.505561724
vioscreen_addsugar
10.01394478
vioscreen_adsugtot
8.405479452
vioscreen_age
215.0
vioscreen_alanine
2.714410818
vioscreen_alcohol
37.46778146
vioscreen_alcohol_servings
2.46901
vioscreen_alphacar
42.43613549
vioscreen_alphtoce
14.63846586
vioscreen_alphtoco
12.77726081
vioscreen_arginine
4.609698403
vioscreen_ash
28.29715593
vioscreen_aspartam
0.0
vioscreen_aspartic
6.820492428
vioscreen_avcarb
52.91970248
vioscreen_bcodeid
Not provided
vioscreen_betacar
2397.164384
vioscreen_betacryp
87.98303724
vioscreen_betaine
16.71197292
vioscreen_betatoco
0.7304384
vioscreen_biochana
0.0018630139999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
190.71365580000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.9284400000000002
vioscreen_calcium_servings
4.0509
vioscreen_calories
1807.122089
vioscreen_carbo
70.92523545
vioscreen_cholest
268.1784889
vioscreen_choline
274.59302230000003
vioscreen_clac9t11
0.151068491
vioscreen_clat10c12
0.027452052999999997
vioscreen_copper
1.39753418
vioscreen_coumest
0.15298631199999999
vioscreen_cystine
0.790876749
vioscreen_d_cheese
1.867013759
vioscreen_d_milk
0.061424658
vioscreen_d_tot_soym
1.92843837
vioscreen_d_total
1.92843837
vioscreen_d_yogurt
0.0
vioscreen_daidzein
9.017808218999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.2243013560000002
vioscreen_discfat_oil
41.34739673
vioscreen_discfat_sol
52.55854559
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.0030410959999999996
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.20134246
vioscreen_f_nj_total
0.20134246
vioscreen_f_other
0.20134246
vioscreen_f_total
0.204383557
vioscreen_fat
116.6949807
vioscreen_fiber
17.86323309
vioscreen_fibh2o
5.986712061
vioscreen_fibinso
11.93991866
vioscreen_finished
9/21/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
356.76875
vioscreen_fol_nat
353.3759204
vioscreen_fol_syn
1.996082212
vioscreen_formontn
0.0030136990000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.4
vioscreen_fructose
4.84095877
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.153178082
vioscreen_g_total
0.17780822300000002
vioscreen_g_whl
0.024630136
vioscreen_galactos
0.113178086
vioscreen_gammtoco
15.03027344
vioscreen_gender
false
vioscreen_genistn
11.50676771
vioscreen_glac
11.44945152
vioscreen_gltc
12.83876686
vioscreen_glucose
5.8795075720000005
vioscreen_glutamic
15.05367081
vioscreen_glycine
2.588383756
vioscreen_glycitn
2.9145481060000002
vioscreen_grams
3929.3551369999996
vioscreen_hei2010_dairy
8.2
vioscreen_hei2010_empty_calories
9.9
vioscreen_hei2010_fatty_acids
2.8
vioscreen_hei2010_fruit
0.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
53.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.4
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
4.4
vioscreen_hei_fruit
0.7
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.2
vioscreen_hei_non_juice_frt
1.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
44.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
4.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.904356405
vioscreen_inositol
0.17778082
vioscreen_iron
9.912520066
vioscreen_isoleuc
3.2256167060000003
vioscreen_isomalt
0.0
vioscreen_joules
7560.994521
vioscreen_juice_servings
0.0060799999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
2.3671505440000002
vioscreen_legumes
0.145945207
vioscreen_leucine
5.632547624
vioscreen_line_gi
57.46506849
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2268.7404109999998
vioscreen_lycopene
672.5156678
vioscreen_lysine
4.261424778
vioscreen_m_egg
0.5716438189999999
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
4.391863094
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
2.8163560839999997
vioscreen_magnes
341.5847389
vioscreen_maltitol
0.0
vioscreen_maltose
0.48361645
vioscreen_mangan
3.207945272
vioscreen_mannitol
0.082027393
vioscreen_methhis3
0.0
vioscreen_methion
1.320027391
vioscreen_mfa141
0.18476713
vioscreen_mfa161
1.3818903669999998
vioscreen_mfa181
38.77523277
vioscreen_mfa201
0.556082195
vioscreen_mfa221
0.003479452
vioscreen_mfatot
41.28986248
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
12.74775391
vioscreen_nccglbr
37.35665668
vioscreen_nccglgr
26.13230148
vioscreen_niacin
13.41490395
vioscreen_niacineq
27.23438303
vioscreen_nitrogen
11.61769852
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9083012830000001
vioscreen_oxalic
231.7992723
vioscreen_oxalicm
315.9253211
vioscreen_pantothe
4.39663019
vioscreen_pectins
3.1757534919999997
vioscreen_pfa182
22.3166029
vioscreen_pfa183
1.873260247
vioscreen_pfa184
0.004219178
vioscreen_pfa204
0.080438358
vioscreen_pfa205
0.007232876
vioscreen_pfa225
0.009589041
vioscreen_pfa226
0.014027396999999999
vioscreen_pfatot
24.42610766
vioscreen_phenylal
3.508986382
vioscreen_phosphor
1353.799315
vioscreen_phytic
1024.142209
vioscreen_pinitol
0.102794522
vioscreen_potass
2278.957363
vioscreen_procdate
10/28/15
vioscreen_proline
5.08238308
vioscreen_protanim
26.85594232
vioscreen_protein
70.1903628
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
43.33569938
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
51.0
vioscreen_retinol
469.78737160000003
vioscreen_rgrain
0.578191804
vioscreen_ribofla
1.4976985569999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.05795
vioscreen_satoco
0.064684933
vioscreen_selenium
85.58965111
vioscreen_serine
4.012548159
vioscreen_sfa100
1.206821891
vioscreen_sfa120
1.341041042
vioscreen_sfa140
4.9736983630000005
vioscreen_sfa160
20.96057497
vioscreen_sfa170
0.18194521600000002
vioscreen_sfa180
8.148656892
vioscreen_sfa200
0.413342452
vioscreen_sfa220
0.733917822
vioscreen_sfa40
1.424411053
vioscreen_sfa60
0.804547955
vioscreen_sfa80
0.564027426
vioscreen_sfatot
41.87586687
vioscreen_sodium
6295.413699000001
vioscreen_sorbitol
0.040356163
vioscreen_srvid
20830.0
vioscreen_starch
13.89128853
vioscreen_started
9/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.830876097000001
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.17279452
vioscreen_tfa161t
0.163041102
vioscreen_tfa181t
1.2429315440000002
vioscreen_tfa182t
0.367424659
vioscreen_tgrain
0.7497260109999999
vioscreen_thiamin
1.97493144
vioscreen_threonin
2.479561918
vioscreen_time
13.0
vioscreen_totaltfa
1.8024930769999998
vioscreen_totcla
0.17882193
vioscreen_totfolat
355.37144689999997
vioscreen_totsugar
21.42435788
vioscreen_tryptoph
0.830383552
vioscreen_tyrosine
2.777013993
vioscreen_user_id
20830.0
vioscreen_v_drkgr
0.493534245
vioscreen_v_orange
0.0
vioscreen_v_other
1.274547922
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.130684934
vioscreen_v_total
1.8987672569999998
vioscreen_valine
3.684630512
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.8
vioscreen_visit
1.0
vioscreen_vita_iu
5671.648972999999
vioscreen_vita_rae
674.9860445
vioscreen_vita_re
880.1827055
vioscreen_vitb12
2.63550691
vioscreen_vitb6
1.318575256
vioscreen_vitc
89.62071918
vioscreen_vitd
4.734685025
vioscreen_vitd2
0.0
vioscreen_vitd3
4.734685025
vioscreen_vitd_iu
189.387401
vioscreen_vite_iu
19.06202911
vioscreen_vitk
154.1832085
vioscreen_water
3611.1198630000004
vioscreen_weight
Not provided
vioscreen_wgrain
0.171534248
vioscreen_whole_grain_servings
0.024630000000000003
vioscreen_xylitol
0.041890411
vioscreen_zinc
8.701670858
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never