American Gut Project; 10317.000031871
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634347
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031871
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031871
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
24.68
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-14
collection month
August
collection season
Summer
collection time
09:00
collection_timestamp
2015-08-14 09:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
61.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
22a4523328ebc5abdc25e79818f69f61136d2efd9b2f6ea73967dcd7d2a74cb08f204a9914cd3f1c35b9bd86110ed94605004990f261a656e16001f71fd2c947
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-123.0
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000031871
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
23f21ce917f41308
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.178219145
vioscreen_a_cal
274.7045163
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.83038247
vioscreen_addsugar
54.65698309
vioscreen_adsugtot
46.74643622
vioscreen_age
215.0
vioscreen_alanine
4.114108987
vioscreen_alcohol
33.86841021
vioscreen_alcohol_servings
2.17822
vioscreen_alphacar
1073.3542810000001
vioscreen_alphtoce
19.95443868
vioscreen_alphtoco
17.8101616
vioscreen_arginine
5.988053831
vioscreen_ash
28.96098566
vioscreen_aspartam
34.61306721
vioscreen_aspartic
8.765863121
vioscreen_avcarb
258.4157748
vioscreen_bcodeid
Not provided
vioscreen_betacar
13031.3589
vioscreen_betacryp
184.6012628
vioscreen_betaine
299.0707406
vioscreen_betatoco
0.893671407
vioscreen_biochana
0.026136989
vioscreen_bmi
Not provided
vioscreen_caffeine
267.5531464
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
2
vioscreen_calcium_from_dairy_servings
0.6806300000000001
vioscreen_calcium_servings
3.10986
vioscreen_calories
2632.858048
vioscreen_carbo
299.35877569999997
vioscreen_cholest
182.879238
vioscreen_choline
391.3996147
vioscreen_clac9t11
0.06252055200000001
vioscreen_clat10c12
0.017726027
vioscreen_copper
2.414465332
vioscreen_coumest
0.3191507
vioscreen_cystine
1.3274246840000001
vioscreen_d_cheese
0.559013722
vioscreen_d_milk
0.12153424800000001
vioscreen_d_tot_soym
0.680630117
vioscreen_d_total
0.680630117
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.3864114
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.127973165
vioscreen_discfat_oil
43.90000268
vioscreen_discfat_sol
29.51569724
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001808219
vioscreen_f_citmlb
0.522876687
vioscreen_f_nj_citmlb
0.51994516
vioscreen_f_nj_other
0.9292329140000001
vioscreen_f_nj_total
1.4493150680000002
vioscreen_f_other
0.9292329140000001
vioscreen_f_total
1.452219004
vioscreen_fat
101.41812929999999
vioscreen_fiber
40.91942958
vioscreen_fibh2o
12.87320741
vioscreen_fibinso
28.08334225
vioscreen_finished
8/13/15
vioscreen_fish_servings
1.18288
vioscreen_fol_deqv
563.4746575
vioscreen_fol_nat
428.8666524
vioscreen_fol_syn
79.07775578
vioscreen_formontn
0.005945206
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.9
vioscreen_fructose
25.92978382
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.865753759
vioscreen_g_total
8.932875375
vioscreen_g_whl
5.06706844
vioscreen_galactos
0.461342464
vioscreen_gammtoco
17.48068948
vioscreen_gender
false
vioscreen_genistn
6.698631475
vioscreen_glac
119.2438356
vioscreen_gltc
132.9546661
vioscreen_glucose
26.72460402
vioscreen_glutamic
18.85684396
vioscreen_glycine
4.190548079
vioscreen_glycitn
1.154493274
vioscreen_grams
4415.466438
vioscreen_hei2010_dairy
2.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.4
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.7
vioscreen_hei_score
75.7
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
15.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.324821242
vioscreen_inositol
0.256493158
vioscreen_iron
19.7501097
vioscreen_isoleuc
3.7117538660000005
vioscreen_isomalt
0.0
vioscreen_joules
11015.87534
vioscreen_juice_servings
0.0057799999999999995
vioscreen_lactitol
0.0
vioscreen_lactose
2.044301323
vioscreen_legumes
0.194246538
vioscreen_leucine
6.578054099
vioscreen_line_gi
546.7806935
vioscreen_low_fat_dairy_serving
0.02266
vioscreen_lutzeax
14090.23836
vioscreen_lycopene
10251.83904
vioscreen_lysine
4.989315002
vioscreen_m_egg
0.3906301
vioscreen_m_fish_hi
0.330027416
vioscreen_m_fish_lo
0.34402739600000004
vioscreen_m_frank
0.502191747
vioscreen_m_meat
1.6983834880000002
vioscreen_m_mpf
2.980575436
vioscreen_m_nutsd
4.389123368
vioscreen_m_organ
0.0
vioscreen_m_poult
0.1059452
vioscreen_m_soy
0.7646848909999999
vioscreen_magnes
572.3590325
vioscreen_maltitol
0.0
vioscreen_maltose
5.898493686
vioscreen_mangan
8.451561162
vioscreen_mannitol
0.49408218200000004
vioscreen_methhis3
11.80753291
vioscreen_methion
1.702493077
vioscreen_mfa141
0.090082205
vioscreen_mfa161
0.9410959740000001
vioscreen_mfa181
39.43412083
vioscreen_mfa201
0.581123289
vioscreen_mfa221
0.063479452
vioscreen_mfatot
41.40583797
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.8101616
vioscreen_nccglbr
209.57345890000002
vioscreen_nccglgr
146.5971747
vioscreen_niacin
27.82437661
vioscreen_niacineq
45.14392123
vioscreen_nitrogen
16.00166818
vioscreen_non_fried_fish_servings
1.18288
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.101479559
vioscreen_oxalic
594.1805651000001
vioscreen_oxalicm
634.5577911
vioscreen_pantothe
6.773780635
vioscreen_pectins
6.024245505
vioscreen_pfa182
23.92556453
vioscreen_pfa183
1.931671393
vioscreen_pfa184
0.012082193
vioscreen_pfa204
0.078684935
vioscreen_pfa205
0.04293151
vioscreen_pfa225
0.022383562000000003
vioscreen_pfa226
0.09317806699999999
vioscreen_pfatot
26.19277344
vioscreen_phenylal
4.148247539
vioscreen_phosphor
1678.066952
vioscreen_phytic
1669.038014
vioscreen_pinitol
0.063424662
vioscreen_potass
4260.157534
vioscreen_procdate
10/28/15
vioscreen_proline
5.598493017000001
vioscreen_protanim
34.109888700000006
vioscreen_protein
95.56424444
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
61.45692423
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
205.0
vioscreen_retinol
154.0805116
vioscreen_rgrain
4.283616157
vioscreen_ribofla
2.121370331
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.3658099999999997
vioscreen_satoco
0.0
vioscreen_selenium
164.3229559
vioscreen_serine
4.435534501
vioscreen_sfa100
0.30164383100000003
vioscreen_sfa120
0.773780885
vioscreen_sfa140
1.6368495159999998
vioscreen_sfa160
14.63890465
vioscreen_sfa170
0.108739733
vioscreen_sfa180
6.182083423
vioscreen_sfa200
0.416821916
vioscreen_sfa220
0.73709583
vioscreen_sfa40
0.311862998
vioscreen_sfa60
0.152520543
vioscreen_sfa80
0.17057534800000002
vioscreen_sfatot
26.02366759
vioscreen_sodium
4781.549658
vioscreen_sorbitol
1.314493174
vioscreen_srvid
20396.0
vioscreen_starch
125.07382279999999
vioscreen_started
8/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
38.60775364
vioscreen_sweet_servings
0.84645
vioscreen_tagatose
0.843534287
vioscreen_tfa161t
0.042164385
vioscreen_tfa181t
1.916685005
vioscreen_tfa182t
0.40394517
vioscreen_tgrain
9.107260006
vioscreen_thiamin
2.071917474
vioscreen_threonin
3.193123261
vioscreen_time
58.0
vioscreen_totaltfa
2.497205426
vioscreen_totcla
0.080849331
vioscreen_totfolat
507.9442637
vioscreen_totsugar
100.4457834
vioscreen_tryptoph
1.039917745
vioscreen_tyrosine
2.992493512
vioscreen_user_id
20396.0
vioscreen_v_drkgr
1.106000007
vioscreen_v_orange
0.298520566
vioscreen_v_other
1.326438339
vioscreen_v_potato
0.24917807399999997
vioscreen_v_starcy
0.132547948
vioscreen_v_tomato
0.658876686
vioscreen_v_total
3.7715890539999997
vioscreen_valine
4.309945218999999
vioscreen_veg5_day
5.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.5
vioscreen_visit
1.0
vioscreen_vita_iu
23281.54521
vioscreen_vita_rae
1292.4436640000001
vioscreen_vita_re
2430.804623
vioscreen_vitb12
2.7293152689999998
vioscreen_vitb6
2.355561891
vioscreen_vitc
143.7975171
vioscreen_vitd
3.5285206419999997
vioscreen_vitd2
0.0034246579999999997
vioscreen_vitd3
3.525150832
vioscreen_vitd_iu
141.1408257
vioscreen_vite_iu
26.54736997
vioscreen_vitk
673.988613
vioscreen_water
3883.043836
vioscreen_weight
Not provided
vioscreen_wgrain
4.823643515
vioscreen_whole_grain_servings
5.067069999999999
vioscreen_xylitol
0.0790685
vioscreen_zinc
14.02986542
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
82.0
weight_change
Not provided
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily