American Gut Project; 10317.000028176
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633937
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028176
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28176
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
23.04
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-16
collection month
August
collection season
Summer
collection time
17:30
collection_timestamp
2015-08-16 17:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
9.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
178.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
3c646172f168fd1aaf6146fe2b4a16edaf27beafbe724a3ea0a8dbf1fbaeedb5525601b221c71d067eb4de32ca6492ea11da0775577d20c19880d59e4ccf93f2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000028176
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
b72ce92464b6a4af
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.585890428
vioscreen_a_cal
82.85038527
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.49972576
vioscreen_addsugar
29.87783605
vioscreen_adsugtot
27.32476723
vioscreen_age
215.0
vioscreen_alanine
1.7730413569999999
vioscreen_alcohol
8.466136692000001
vioscreen_alcohol_servings
0.5858899999999999
vioscreen_alphacar
1493.054623
vioscreen_alphtoce
13.19797464
vioscreen_alphtoco
11.72207968
vioscreen_arginine
2.409917795
vioscreen_ash
17.82608358
vioscreen_aspartam
127.54920800000001
vioscreen_aspartic
4.225616371
vioscreen_avcarb
177.1852633
vioscreen_bcodeid
Not provided
vioscreen_betacar
9303.482192
vioscreen_betacryp
435.8421233
vioscreen_betaine
108.0543343
vioscreen_betatoco
0.5764931870000001
vioscreen_biochana
0.013232876999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
118.5617295
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.29258
vioscreen_calcium_servings
1.84153
vioscreen_calories
1437.673116
vioscreen_carbo
204.372881
vioscreen_cholest
55.88194028
vioscreen_choline
184.7266909
vioscreen_clac9t11
0.031287669
vioscreen_clat10c12
0.005835616
vioscreen_copper
1.323808393
vioscreen_coumest
0.127424663
vioscreen_cystine
0.596548002
vioscreen_d_cheese
0.134164387
vioscreen_d_milk
0.016
vioscreen_d_tot_soym
0.292575366
vioscreen_d_total
0.292575366
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
8.574026782
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.713067878
vioscreen_discfat_oil
28.51370131
vioscreen_discfat_sol
13.83383722
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001287671
vioscreen_f_citmlb
0.204273966
vioscreen_f_nj_citmlb
0.203287663
vioscreen_f_nj_other
1.274904016
vioscreen_f_nj_total
1.478191721
vioscreen_f_other
1.274904016
vioscreen_f_total
1.4791505580000002
vioscreen_fat
50.12252783
vioscreen_fiber
27.16474208
vioscreen_fibh2o
7.698109081
vioscreen_fibinso
19.50964389
vioscreen_finished
8/16/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
502.30068489999996
vioscreen_fol_nat
292.0249144
vioscreen_fol_syn
123.6879281
vioscreen_formontn
0.002273973
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
19.8993659
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.745945426
vioscreen_g_total
4.3532326889999995
vioscreen_g_whl
1.607260174
vioscreen_galactos
0.35920543899999996
vioscreen_gammtoco
12.11098566
vioscreen_gender
false
vioscreen_genistn
10.7346867
vioscreen_glac
77.66870184
vioscreen_gltc
85.24628639
vioscreen_glucose
19.05737104
vioscreen_glutamic
8.222629495
vioscreen_glycine
1.5296440230000001
vioscreen_glycitn
1.6983288069999998
vioscreen_grams
3254.915068
vioscreen_hei2010_dairy
1.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.1
vioscreen_hei2010_refined_grains
9.6
vioscreen_hei2010_score
76.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
6.2
vioscreen_hei_milk
1.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.6
vioscreen_hei_score
74.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
0.941397137
vioscreen_inositol
0.07427396900000001
vioscreen_iron
13.46624572
vioscreen_isoleuc
1.66386284
vioscreen_isomalt
0.0
vioscreen_joules
6015.219863
vioscreen_juice_servings
0.00195
vioscreen_lactitol
0.0
vioscreen_lactose
2.557013525
vioscreen_legumes
0.011945206000000002
vioscreen_leucine
2.9158360310000004
vioscreen_line_gi
411.4112586
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
9225.978767
vioscreen_lycopene
2441.739897
vioscreen_lysine
2.051095957
vioscreen_m_egg
0.241260267
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.018465753
vioscreen_m_meat
0.016054795
vioscreen_m_mpf
0.063041097
vioscreen_m_nutsd
0.01030137
vioscreen_m_organ
0.0
vioscreen_m_poult
0.028520548
vioscreen_m_soy
1.864904116
vioscreen_magnes
314.97198199999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.3838358
vioscreen_mangan
4.110329824
vioscreen_mannitol
0.51438352
vioscreen_methhis3
0.277150695
vioscreen_methion
0.664246525
vioscreen_mfa141
0.00909589
vioscreen_mfa161
0.292958905
vioscreen_mfa181
14.85676771
vioscreen_mfa201
0.101479475
vioscreen_mfa221
0.002191781
vioscreen_mfatot
15.32087703
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.72207968
vioscreen_nccglbr
145.3817316
vioscreen_nccglgr
101.6987051
vioscreen_niacin
13.69388913
vioscreen_niacineq
21.83682176
vioscreen_nitrogen
6.882382411
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4010411090000001
vioscreen_oxalic
450.27106160000005
vioscreen_oxalicm
465.78732879999995
vioscreen_pantothe
3.5191509930000002
vioscreen_pectins
4.488822038
vioscreen_pfa182
17.4279725
vioscreen_pfa183
1.39372592
vioscreen_pfa184
0.000109589
vioscreen_pfa204
0.017780821000000002
vioscreen_pfa205
0.002438356
vioscreen_pfa225
0.000767123
vioscreen_pfa226
0.003945205
vioscreen_pfatot
18.86498689
vioscreen_phenylal
1.924822246
vioscreen_phosphor
792.9420377
vioscreen_phytic
975.4029109999999
vioscreen_pinitol
0.059726025
vioscreen_potass
2759.384418
vioscreen_procdate
10/28/15
vioscreen_proline
2.564110325
vioscreen_protanim
6.010055249
vioscreen_protein
41.80057791
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.78838024
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
195.0
vioscreen_retinol
111.64053940000001
vioscreen_rgrain
2.218493151
vioscreen_ribofla
1.368767224
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.99973
vioscreen_satoco
0.0
vioscreen_selenium
57.87227098
vioscreen_serine
1.95876699
vioscreen_sfa100
0.267643821
vioscreen_sfa120
0.894109522
vioscreen_sfa140
0.9196438720000001
vioscreen_sfa160
6.479369114
vioscreen_sfa170
0.050383565
vioscreen_sfa180
2.770849442
vioscreen_sfa200
0.10309587199999999
vioscreen_sfa220
0.04635617
vioscreen_sfa40
0.224328781
vioscreen_sfa60
0.128986306
vioscreen_sfa80
0.17832877800000002
vioscreen_sfatot
12.12145093
vioscreen_sodium
3393.533904
vioscreen_sorbitol
1.0814518340000001
vioscreen_srvid
20415.0
vioscreen_starch
80.12095462
vioscreen_started
8/16/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.80032909
vioscreen_sweet_servings
0.73237
vioscreen_tagatose
1.421616478
vioscreen_tfa161t
0.004904109
vioscreen_tfa181t
0.692767125
vioscreen_tfa182t
0.236273967
vioscreen_tgrain
4.841205921
vioscreen_thiamin
1.611862893
vioscreen_threonin
1.460082172
vioscreen_time
28.0
vioscreen_totaltfa
0.9701918509999999
vioscreen_totcla
0.037835618
vioscreen_totfolat
415.7126712
vioscreen_totsugar
75.12268836
vioscreen_tryptoph
0.489068436
vioscreen_tyrosine
1.304931641
vioscreen_user_id
20415.0
vioscreen_v_drkgr
0.521041076
vioscreen_v_orange
0.268986281
vioscreen_v_other
2.8496983360000003
vioscreen_v_potato
0.46506849299999997
vioscreen_v_starcy
0.096438358
vioscreen_v_tomato
0.33761644799999996
vioscreen_v_total
4.538849128
vioscreen_valine
1.9652056130000002
vioscreen_veg5_day
9.4
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
9.1
vioscreen_visit
1.0
vioscreen_vita_iu
17485.71918
vioscreen_vita_rae
967.3017979
vioscreen_vita_re
1822.964212
vioscreen_vitb12
1.816685005
vioscreen_vitb6
1.9809590380000002
vioscreen_vitc
275.4911601
vioscreen_vitd
0.742219105
vioscreen_vitd2
0.0009589039999999999
vioscreen_vitd3
0.7412328429999999
vioscreen_vitd_iu
29.68876418
vioscreen_vite_iu
17.47249037
vioscreen_vitk
328.6774187
vioscreen_water
2951.205137
vioscreen_weight
Not provided
vioscreen_wgrain
2.622712101
vioscreen_whole_grain_servings
1.6072600000000001
vioscreen_xylitol
0.038794523
vioscreen_zinc
6.458986382000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily