American Gut Project; 10317.000026015
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632713
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026015
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
68.0
age_corrected
68.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26015
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1947.0
bmi
23.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-30
collection month
March
collection season
Spring
collection time
08:30
collection_timestamp
2015-03-30 08:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
266.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
10e5d38642b6b6f9ba9ce7f326f0e960a59308b14c8cda51b2536a7f7e9793b99ba22addc42136714813138eeefb372b9186b3d16f1a43b2828201e408f167b6
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
44.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-89.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000026015
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WI
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
4e301ec155ebb365
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.42435616299999995
vioscreen_a_cal
41.66953393
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.701232742999999
vioscreen_addsugar
40.52695848
vioscreen_adsugtot
32.60597442
vioscreen_age
215.0
vioscreen_alanine
4.946656946
vioscreen_alcohol
5.954794521
vioscreen_alcohol_servings
0.42436
vioscreen_alphacar
671.1190497
vioscreen_alphtoce
16.00218991
vioscreen_alphtoco
14.37314988
vioscreen_arginine
5.7842472439999995
vioscreen_ash
21.60271163
vioscreen_aspartam
0.0
vioscreen_aspartic
9.266985499
vioscreen_avcarb
159.2855736
vioscreen_bcodeid
Not provided
vioscreen_betacar
2095.310274
vioscreen_betacryp
56.02695848
vioscreen_betaine
36.60649615
vioscreen_betatoco
0.632712252
vioscreen_biochana
0.0021643829999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
392.73634419999996
vioscreen_calcium
true
vioscreen_calcium_avg
800.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
1.59025
vioscreen_calcium_servings
3.1419200000000003
vioscreen_calories
2149.0772260000003
vioscreen_carbo
180.5828125
vioscreen_cholest
616.407149
vioscreen_choline
604.0499572000001
vioscreen_clac9t11
0.15364383
vioscreen_clat10c12
0.035863018999999996
vioscreen_copper
1.123698613
vioscreen_coumest
0.267589036
vioscreen_cystine
1.2678903240000001
vioscreen_d_cheese
1.005780865
vioscreen_d_milk
0.334273978
vioscreen_d_tot_soym
1.5902465819999998
vioscreen_d_total
1.5902465819999998
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.31019178399999997
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.682411173
vioscreen_discfat_oil
39.72123288
vioscreen_discfat_sol
46.88808326
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.665945184
vioscreen_f_nj_citmlb
0.663123269
vioscreen_f_nj_other
0.840465723
vioscreen_f_nj_total
1.503643715
vioscreen_f_other
0.840465723
vioscreen_f_total
1.5064381219999998
vioscreen_fat
115.9352098
vioscreen_fiber
21.29638137
vioscreen_fibh2o
8.917424282999999
vioscreen_fibinso
12.4262187
vioscreen_finished
3/26/15
vioscreen_fish_servings
1.03731
vioscreen_fol_deqv
345.46815069999997
vioscreen_fol_nat
249.33165669999997
vioscreen_fol_syn
56.58958689999999
vioscreen_formontn
0.002575342
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
14.68027478
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.418794648
vioscreen_g_total
3.504602887
vioscreen_g_whl
1.085835663
vioscreen_galactos
0.5612602760000001
vioscreen_gammtoco
13.51909916
vioscreen_gender
false
vioscreen_genistn
0.112876714
vioscreen_glac
79.25120933
vioscreen_gltc
86.38207406
vioscreen_glucose
17.98980897
vioscreen_glutamic
17.0687393
vioscreen_glycine
4.35638411
vioscreen_glycitn
0.0042739729999999995
vioscreen_grams
3616.84726
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
15.7
vioscreen_hei2010_fatty_acids
4.4
vioscreen_hei2010_fruit
4.4
vioscreen_hei2010_greens_beans
1.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.1
vioscreen_hei2010_veg
2.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.4
vioscreen_hei_drk_g_org_veg_leg
1.7
vioscreen_hei_fruit
4.4
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
63.1
vioscreen_hei_sodium
4.1
vioscreen_hei_sol_fat_alc_add_sug
14.9
vioscreen_hei_veg
2.9
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
2.8462733439999996
vioscreen_inositol
0.080136997
vioscreen_iron
12.32802868
vioscreen_isoleuc
4.535040534
vioscreen_isomalt
0.0
vioscreen_joules
8991.738356
vioscreen_juice_servings
0.0057
vioscreen_lactitol
0.0
vioscreen_lactose
11.0396986
vioscreen_legumes
0.0
vioscreen_leucine
7.889669842000001
vioscreen_line_gi
408.2830908
vioscreen_low_fat_dairy_serving
0.27164
vioscreen_lutzeax
1397.914469
vioscreen_lycopene
1456.329623
vioscreen_lysine
7.07273986
vioscreen_m_egg
2.0326026390000003
vioscreen_m_fish_hi
0.25545204899999996
vioscreen_m_fish_lo
0.34189041299999995
vioscreen_m_frank
0.600958921
vioscreen_m_meat
3.461479626
vioscreen_m_mpf
5.747534514
vioscreen_m_nutsd
2.19306858
vioscreen_m_organ
0.0
vioscreen_m_poult
1.087808186
vioscreen_m_soy
0.007260274000000001
vioscreen_magnes
328.50372430000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.02216429
vioscreen_mangan
3.3085750210000002
vioscreen_mannitol
0.09216438199999999
vioscreen_methhis3
22.53180918
vioscreen_methion
2.3865204280000003
vioscreen_mfa141
0.22378084399999998
vioscreen_mfa161
1.7857261340000001
vioscreen_mfa181
39.102327700000004
vioscreen_mfa201
0.400904115
vioscreen_mfa221
0.038164383999999996
vioscreen_mfatot
41.85608412
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.37314988
vioscreen_nccglbr
135.6080586
vioscreen_nccglgr
94.85711687
vioscreen_niacin
22.06144986
vioscreen_niacineq
38.43846854
vioscreen_nitrogen
15.81041176
vioscreen_non_fried_fish_servings
1.03731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5084930840000002
vioscreen_oxalic
156.7873288
vioscreen_oxalicm
201.6396832
vioscreen_pantothe
7.830629281
vioscreen_pectins
3.0524109719999997
vioscreen_pfa182
23.69753853
vioscreen_pfa183
1.298876702
vioscreen_pfa184
0.009561644000000001
vioscreen_pfa204
0.267753413
vioscreen_pfa205
0.045041092000000005
vioscreen_pfa225
0.034164382
vioscreen_pfa226
0.122383567
vioscreen_pfatot
25.56290133
vioscreen_phenylal
4.414794253
vioscreen_phosphor
1474.041438
vioscreen_phytic
778.1661815
vioscreen_pinitol
0.016191782
vioscreen_potass
2968.0003420000003
vioscreen_procdate
10/28/15
vioscreen_proline
5.783041925
vioscreen_protanim
75.97290240000001
vioscreen_protein
97.44307577
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.46586312
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
510.0
vioscreen_retinol
512.9219606
vioscreen_rgrain
1.077315072
vioscreen_ribofla
2.526410999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.28449
vioscreen_satoco
0.0
vioscreen_selenium
140.06020980000002
vioscreen_serine
4.853534688
vioscreen_sfa100
0.793013648
vioscreen_sfa120
0.89720551
vioscreen_sfa140
3.6329589839999996
vioscreen_sfa160
20.74964416
vioscreen_sfa170
0.210958925
vioscreen_sfa180
8.675177922
vioscreen_sfa200
0.270684961
vioscreen_sfa220
0.37720545899999997
vioscreen_sfa40
0.968356198
vioscreen_sfa60
0.542849397
vioscreen_sfa80
0.34920547700000004
vioscreen_sfatot
38.10618846
vioscreen_sodium
3302.327397
vioscreen_sorbitol
0.05216438599999999
vioscreen_srvid
18387.0
vioscreen_starch
72.40799444
vioscreen_started
3/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.73345195
vioscreen_sweet_servings
0.68493
vioscreen_tagatose
2.565342566
vioscreen_tfa161t
0.100027393
vioscreen_tfa181t
2.369753485
vioscreen_tfa182t
0.436876647
vioscreen_tgrain
3.542465753
vioscreen_thiamin
1.232438263
vioscreen_threonin
3.82172584
vioscreen_time
33.0
vioscreen_totaltfa
2.923671273
vioscreen_totcla
0.190821922
vioscreen_totfolat
305.9212543
vioscreen_totsugar
74.10117723
vioscreen_tryptoph
0.98353422
vioscreen_tyrosine
3.522958917
vioscreen_user_id
18387.0
vioscreen_v_drkgr
0.166301372
vioscreen_v_orange
0.131041101
vioscreen_v_other
0.20912329300000002
vioscreen_v_potato
0.7451506309999999
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.09750686
vioscreen_v_total
1.349040996
vioscreen_valine
5.200328419
vioscreen_veg5_day
1.5
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.7
vioscreen_visit
1.0
vioscreen_vita_iu
5808.188356000001
vioscreen_vita_rae
717.8284247
vioscreen_vita_re
922.7357021
vioscreen_vitb12
5.400247151
vioscreen_vitb6
2.093260548
vioscreen_vitc
89.71029003
vioscreen_vitd
6.716081175
vioscreen_vitd2
0.000630137
vioscreen_vitd3
6.71550594
vioscreen_vitd_iu
268.64324700000003
vioscreen_vite_iu
21.40164143
vioscreen_vitk
72.98352419
vioscreen_water
3244.674658
vioscreen_weight
Not provided
vioscreen_wgrain
2.465150598
vioscreen_whole_grain_servings
1.08584
vioscreen_xylitol
0.032876718
vioscreen_zinc
13.47854773
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)