American Gut Project; 10317.000022499
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632504
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-09T19:40:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022499
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22499
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
21.03
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
Northeast
chickenpox
Yes
clinical condition
Not provided
collection date
2015-04-17
collection month
April
collection season
Spring
collection time
07:30
collection_timestamp
2015-04-17 07:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
363.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
366b833a6c3b55164949a93d0fd044e257e150ecf3b23de0da9b35f30c181a7430242c7109bfdcffda057ff85efac5c1e1cd430a38ee051575e445ee5ff6b90e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022499
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
99451a1cab64e89b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.222712331
vioscreen_a_cal
26.04559075
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.6036714739999995
vioscreen_addsugar
28.15813891
vioscreen_adsugtot
26.25928671
vioscreen_age
215.0
vioscreen_alanine
2.8390410960000003
vioscreen_alcohol
3.419150658
vioscreen_alcohol_servings
0.22271
vioscreen_alphacar
2715.359932
vioscreen_alphtoce
12.82684878
vioscreen_alphtoco
11.18131555
vioscreen_arginine
3.2070683730000002
vioscreen_ash
24.38038581
vioscreen_aspartam
0.0
vioscreen_aspartic
5.560027156
vioscreen_avcarb
264.6994221
vioscreen_bcodeid
Not provided
vioscreen_betacar
8780.05
vioscreen_betacryp
288.6536601
vioscreen_betaine
194.6612158
vioscreen_betatoco
0.475068435
vioscreen_biochana
0.00580822
vioscreen_bmi
Not provided
vioscreen_caffeine
49.55597175
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.72882
vioscreen_calcium_servings
4.45748
vioscreen_calories
2629.4279109999998
vioscreen_carbo
294.98268410000003
vioscreen_cholest
368.1793236
vioscreen_choline
327.0374358
vioscreen_clac9t11
0.263753415
vioscreen_clat10c12
0.046136992
vioscreen_copper
1.527589061
vioscreen_coumest
0.000547945
vioscreen_cystine
1.085808156
vioscreen_d_cheese
1.543808192
vioscreen_d_milk
0.17991780300000002
vioscreen_d_tot_soym
1.728821971
vioscreen_d_total
1.728821971
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.12457534599999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.4703285530000003
vioscreen_discfat_oil
33.2428216
vioscreen_discfat_sol
80.01793129
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00060274
vioscreen_f_citmlb
0.171178081
vioscreen_f_nj_citmlb
0.16463013699999998
vioscreen_f_nj_other
1.142164424
vioscreen_f_nj_total
1.3067945509999999
vioscreen_f_other
1.142164424
vioscreen_f_total
1.313342452
vioscreen_fat
131.6499251
vioscreen_fiber
30.26345516
vioscreen_fibh2o
9.862711366000001
vioscreen_fibinso
20.42986275
vioscreen_finished
1/22/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
868.3887842
vioscreen_fol_nat
318.1267765
vioscreen_fol_syn
323.5114084
vioscreen_formontn
0.001150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
2.6
vioscreen_fructose
14.49988897
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
11.5203018
vioscreen_g_total
12.77260408
vioscreen_g_whl
1.252383548
vioscreen_galactos
0.25989039199999997
vioscreen_gammtoco
14.22361676
vioscreen_gender
false
vioscreen_genistn
0.181041101
vioscreen_glac
129.3619007
vioscreen_gltc
140.59431719999998
vioscreen_glucose
13.65082138
vioscreen_glutamic
18.64707031
vioscreen_glycine
2.366356251
vioscreen_glycitn
0.011726028000000001
vioscreen_grams
3905.4
vioscreen_hei2010_dairy
5.1
vioscreen_hei2010_empty_calories
11.9
vioscreen_hei2010_fatty_acids
0.8
vioscreen_hei2010_fruit
3.1
vioscreen_hei2010_greens_beans
3.1
vioscreen_hei2010_protien_foods
1.0
vioscreen_hei2010_refined_grains
0.0
vioscreen_hei2010_score
40.3
vioscreen_hei2010_sea_foods_plant_protiens
0.6
vioscreen_hei2010_sodium
1.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.2
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
3.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
2.0
vioscreen_hei_milk
5.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
53.8
vioscreen_hei_sodium
1.2
vioscreen_hei_sol_fat_alc_add_sug
11.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
1.88230131
vioscreen_inositol
0.058821911
vioscreen_iron
18.62676985
vioscreen_isoleuc
3.256219232
vioscreen_isomalt
0.0
vioscreen_joules
11001.52397
vioscreen_juice_servings
0.0131
vioscreen_lactitol
0.0
vioscreen_lactose
5.410548212999999
vioscreen_legumes
0.04391781
vioscreen_leucine
5.749013403999999
vioscreen_line_gi
504.6520976
vioscreen_low_fat_dairy_serving
0.08972999999999999
vioscreen_lutzeax
4100.702397
vioscreen_lycopene
6286.5986299999995
vioscreen_lysine
3.817561403
vioscreen_m_egg
0.84649307
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.009232876
vioscreen_m_frank
0.080027395
vioscreen_m_meat
0.08054794400000001
vioscreen_m_mpf
0.21005479
vioscreen_m_nutsd
0.061917809000000004
vioscreen_m_organ
0.0
vioscreen_m_poult
0.040246574
vioscreen_m_soy
0.014273973
vioscreen_magnes
311.511387
vioscreen_maltitol
0.0
vioscreen_maltose
7.582301477000001
vioscreen_mangan
4.670739579
vioscreen_mannitol
0.462301385
vioscreen_methhis3
0.912000013
vioscreen_methion
1.514986388
vioscreen_mfa141
0.144931521
vioscreen_mfa161
1.94657551
vioscreen_mfa181
46.21287992
vioscreen_mfa201
0.278410946
vioscreen_mfa221
0.006684931
vioscreen_mfatot
49.076846100000004
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
11.18131555
vioscreen_nccglbr
199.9865796
vioscreen_nccglgr
139.89745290000002
vioscreen_niacin
21.03482181
vioscreen_niacineq
36.20528682
vioscreen_nitrogen
11.86805437
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.975013378
vioscreen_oxalic
197.0961259
vioscreen_oxalicm
171.83380780000002
vioscreen_pantothe
5.222767284
vioscreen_pectins
4.53643849
vioscreen_pfa182
17.08811002
vioscreen_pfa183
1.928958757
vioscreen_pfa184
0.002
vioscreen_pfa204
0.09824657699999999
vioscreen_pfa205
0.012410959
vioscreen_pfa225
0.007369863000000001
vioscreen_pfa226
0.024575341
vioscreen_pfatot
19.31369997
vioscreen_phenylal
3.602109643
vioscreen_phosphor
1455.877226
vioscreen_phytic
780.2803938
vioscreen_pinitol
0.000849315
vioscreen_potass
2775.8
vioscreen_procdate
10/28/15
vioscreen_proline
6.672574647
vioscreen_protanim
30.53476563
vioscreen_protein
72.5994863
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
42.06609054
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
598.0
vioscreen_retinol
635.5172945
vioscreen_rgrain
12.55978168
vioscreen_ribofla
1.9275342130000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.49523
vioscreen_satoco
0.0
vioscreen_selenium
137.99513059999998
vioscreen_serine
3.844656665
vioscreen_sfa100
1.668712543
vioscreen_sfa120
2.289753284
vioscreen_sfa140
6.0250688939999995
vioscreen_sfa160
25.98927922
vioscreen_sfa170
0.34243839200000004
vioscreen_sfa180
11.03849395
vioscreen_sfa200
0.22112326399999999
vioscreen_sfa220
0.091945209
vioscreen_sfa40
2.07397277
vioscreen_sfa60
1.177780611
vioscreen_sfa80
0.80969857
vioscreen_sfatot
52.32323951
vioscreen_sodium
4899.793151
vioscreen_sorbitol
0.38284928799999995
vioscreen_srvid
16962.0
vioscreen_starch
176.4299872
vioscreen_started
1/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.05690818
vioscreen_sweet_servings
0.78356
vioscreen_tagatose
1.6853699569999998
vioscreen_tfa161t
0.08389040800000001
vioscreen_tfa181t
3.751013351
vioscreen_tfa182t
0.640575336
vioscreen_tgrain
13.97117803
vioscreen_thiamin
2.352876846
vioscreen_threonin
2.670547778
vioscreen_time
16.0
vioscreen_totaltfa
4.498438169
vioscreen_totcla
0.31043839100000004
vioscreen_totfolat
641.6380565000001
vioscreen_totsugar
70.00501926
vioscreen_tryptoph
0.91104126
vioscreen_tyrosine
2.608739733
vioscreen_user_id
16962.0
vioscreen_v_drkgr
0.323890393
vioscreen_v_orange
0.553397275
vioscreen_v_other
1.281479425
vioscreen_v_potato
0.31150684100000003
vioscreen_v_starcy
0.319863014
vioscreen_v_tomato
0.5264657629999999
vioscreen_v_total
3.3166303239999997
vioscreen_valine
3.82260274
vioscreen_veg5_day
8.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.6
vioscreen_visit
1.0
vioscreen_vita_iu
19253.939730000002
vioscreen_vita_rae
1492.3577050000001
vioscreen_vita_re
2349.193836
vioscreen_vitb12
2.431616211
vioscreen_vitb6
1.780603027
vioscreen_vitc
181.41802230000002
vioscreen_vitd
4.346246589
vioscreen_vitd2
0.001178082
vioscreen_vitd3
4.345123207
vioscreen_vitd_iu
173.8498635
vioscreen_vite_iu
16.67747753
vioscreen_vitk
209.86374139999998
vioscreen_water
3406.231507
vioscreen_weight
Not provided
vioscreen_wgrain
1.411397354
vioscreen_whole_grain_servings
1.2523799999999998
vioscreen_xylitol
0.023616441000000002
vioscreen_zinc
9.342164089
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)