American Gut Project; 10317.000029535
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634059
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029535
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
68.0
age_corrected
68.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29535
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1947.0
bmi
20.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/03/2015
collection month
September
collection season
Fall
collection time
07:00
collection_timestamp
2015-09-03 07:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Germany
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
45.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2452eef40a2c6da9c0fc7dbc2fba39f988915616336adfd09e94d9e7cdc11a3d93575983ccdb3c037359524bdb72f134d1860cd3761f9bee74baf1478427ef8a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
52.2
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-1.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029535
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
3bec11f287fc2ec0
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.568958857
vioscreen_a_cal
69.80051905
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.95742589
vioscreen_addsugar
108.24529109999999
vioscreen_adsugtot
86.42306828
vioscreen_age
215.0
vioscreen_alanine
5.1576987910000005
vioscreen_alcohol
8.879315604
vioscreen_alcohol_servings
0.56896
vioscreen_alphacar
4155.251711999999
vioscreen_alphtoce
20.45504067
vioscreen_alphtoco
17.07342145
vioscreen_arginine
6.213671206
vioscreen_ash
32.27274187
vioscreen_aspartam
0.0
vioscreen_aspartic
10.77139742
vioscreen_avcarb
373.5096747
vioscreen_bcodeid
Not provided
vioscreen_betacar
12260.29041
vioscreen_betacryp
187.306143
vioscreen_betaine
157.6243044
vioscreen_betatoco
0.7023012759999999
vioscreen_biochana
0.0078082180000000004
vioscreen_bmi
Not provided
vioscreen_caffeine
3.58062995
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.09093
vioscreen_calcium_servings
5.52551
vioscreen_calories
3073.443151
vioscreen_carbo
412.7722603
vioscreen_cholest
296.91247860000004
vioscreen_choline
630.905351
vioscreen_clac9t11
0.064301368
vioscreen_clat10c12
0.014849315
vioscreen_copper
2.488274227
vioscreen_coumest
1.426219198
vioscreen_cystine
1.422493044
vioscreen_d_cheese
0.060657533
vioscreen_d_milk
1.028767123
vioscreen_d_tot_soym
2.7428769460000004
vioscreen_d_total
1.090931514
vioscreen_d_yogurt
0.0
vioscreen_daidzein
28.35859375
vioscreen_database
NDSR - V44
vioscreen_delttoco
6.796301771
vioscreen_discfat_oil
53.88780501
vioscreen_discfat_sol
29.41907106
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0023287670000000003
vioscreen_f_citmlb
0.638821913
vioscreen_f_nj_citmlb
0.630712347
vioscreen_f_nj_other
1.7366301240000002
vioscreen_f_nj_total
2.367369769
vioscreen_f_other
1.8012327430000001
vioscreen_f_total
2.440082038
vioscreen_fat
108.7261879
vioscreen_fiber
38.96368793
vioscreen_fibh2o
11.96909648
vioscreen_fibinso
26.99564694
vioscreen_finished
9/1/15
vioscreen_fish_servings
2.53923
vioscreen_fol_deqv
738.2410103
vioscreen_fol_nat
402.8836045
vioscreen_fol_syn
197.34392119999998
vioscreen_formontn
0.0017260270000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
3.1
vioscreen_frtsumm
4.9
vioscreen_fructose
31.09432791
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
7.915123341
vioscreen_g_total
8.63643849
vioscreen_g_whl
0.721315065
vioscreen_galactos
0.485835663
vioscreen_gammtoco
26.87381207
vioscreen_gender
false
vioscreen_genistn
38.74353596
vioscreen_glac
192.3200771
vioscreen_gltc
209.2558433
vioscreen_glucose
35.24230522
vioscreen_glutamic
21.23347737
vioscreen_glycine
4.461260234
vioscreen_glycitn
5.261178296000001
vioscreen_grams
4046.577397
vioscreen_hei2010_dairy
6.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
2.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
6.9
vioscreen_hei2010_score
74.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.6
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
82.7
vioscreen_hei_sodium
1.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.8
vioscreen_height
Not provided
vioscreen_histidin
2.837315055
vioscreen_inositol
0.24863020000000002
vioscreen_iron
23.55036119
vioscreen_isoleuc
4.744163367
vioscreen_isomalt
0.0
vioscreen_joules
12859.2863
vioscreen_juice_servings
0.14545
vioscreen_lactitol
0.0
vioscreen_lactose
11.80619248
vioscreen_legumes
0.12336986
vioscreen_leucine
8.128328339
vioscreen_line_gi
919.7561644
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4735.960615999999
vioscreen_lycopene
12559.48493
vioscreen_lysine
6.955779777999999
vioscreen_m_egg
0.80863012
vioscreen_m_fish_hi
0.823561661
vioscreen_m_fish_lo
0.632739759
vioscreen_m_frank
0.314109572
vioscreen_m_meat
1.79460282
vioscreen_m_mpf
4.761670925
vioscreen_m_nutsd
0.37890411799999996
vioscreen_m_organ
0.0
vioscreen_m_poult
1.196767143
vioscreen_m_soy
3.4487124089999996
vioscreen_magnes
540.18125
vioscreen_maltitol
0.0
vioscreen_maltose
12.95851884
vioscreen_mangan
5.207232917
vioscreen_mannitol
0.797862933
vioscreen_methhis3
18.13211018
vioscreen_methion
2.274301356
vioscreen_mfa141
0.0899452
vioscreen_mfa161
1.129945269
vioscreen_mfa181
39.55906464
vioscreen_mfa201
0.511643877
vioscreen_mfa221
0.12698630800000002
vioscreen_mfatot
41.69600546
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.78780501
vioscreen_nccglbr
340.50207620000003
vioscreen_nccglgr
238.18745719999998
vioscreen_niacin
31.88772207
vioscreen_niacineq
52.27273652
vioscreen_nitrogen
18.039041100000002
vioscreen_non_fried_fish_servings
2.53923
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.350246816
vioscreen_oxalic
343.570869
vioscreen_oxalicm
248.9604452
vioscreen_pantothe
7.566683835
vioscreen_pectins
6.720628211
vioscreen_pfa182
30.33041256
vioscreen_pfa183
3.915261465
vioscreen_pfa184
0.029123285
vioscreen_pfa204
0.165972597
vioscreen_pfa205
0.10909589
vioscreen_pfa225
0.051013696
vioscreen_pfa226
0.246821908
vioscreen_pfatot
35.33405126
vioscreen_phenylal
4.783506796
vioscreen_phosphor
1774.583219
vioscreen_phytic
1409.698545
vioscreen_pinitol
0.10936986800000001
vioscreen_potass
4930.823973
vioscreen_procdate
10/28/15
vioscreen_proline
6.38778026
vioscreen_protanim
53.73005137
vioscreen_protein
111.2564533
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
57.52828018
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
138.0
vioscreen_retinol
706.9707192000001
vioscreen_rgrain
7.649699005
vioscreen_ribofla
2.633287738
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.8705200000000002
vioscreen_satoco
0.634602753
vioscreen_selenium
175.1260702
vioscreen_serine
5.052629696
vioscreen_sfa100
0.23980821600000002
vioscreen_sfa120
0.860767187
vioscreen_sfa140
1.228191721
vioscreen_sfa160
14.02753371
vioscreen_sfa170
0.083890403
vioscreen_sfa180
6.435122806
vioscreen_sfa200
0.24410956399999997
vioscreen_sfa220
0.18235615800000002
vioscreen_sfa40
0.215890398
vioscreen_sfa60
0.108383565
vioscreen_sfa80
0.143780821
vioscreen_sfatot
23.959123499999997
vioscreen_sodium
5763.668493
vioscreen_sorbitol
1.2647945040000002
vioscreen_srvid
20569.0
vioscreen_starch
161.840518
vioscreen_started
9/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.27873972
vioscreen_sucrlose
0.0
vioscreen_sucrose
76.76655608
vioscreen_sweet_servings
1.54413
vioscreen_tagatose
0.859616465
vioscreen_tfa161t
0.030547942
vioscreen_tfa181t
3.070767337
vioscreen_tfa182t
0.556849273
vioscreen_tgrain
9.139917996
vioscreen_thiamin
2.537699159
vioscreen_threonin
4.238766856
vioscreen_time
61.0
vioscreen_totaltfa
3.680246682
vioscreen_totcla
0.079178086
vioscreen_totfolat
600.2272687999999
vioscreen_totsugar
172.60625
vioscreen_tryptoph
1.223972686
vioscreen_tyrosine
3.5864114000000002
vioscreen_user_id
20569.0
vioscreen_v_drkgr
0.174082194
vioscreen_v_orange
0.741452152
vioscreen_v_other
1.554520615
vioscreen_v_potato
1.4818356030000002
vioscreen_v_starcy
0.50890411
vioscreen_v_tomato
0.8861369929999999
vioscreen_v_total
5.346602766
vioscreen_valine
5.36241037
vioscreen_veg5_day
7.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
10.7
vioscreen_visit
1.0
vioscreen_vita_iu
26406.51233
vioscreen_vita_rae
1909.602055
vioscreen_vita_re
3112.233219
vioscreen_vitb12
6.43394558
vioscreen_vitb6
3.059945219
vioscreen_vitc
209.0745291
vioscreen_vitd
15.45610954
vioscreen_vitd2
4.675150832
vioscreen_vitd3
10.78098512
vioscreen_vitd_iu
618.2443814
vioscreen_vite_iu
25.65835295
vioscreen_vitk
213.3434932
vioscreen_water
3424.9671229999994
vioscreen_weight
Not provided
vioscreen_wgrain
1.4901917340000002
vioscreen_whole_grain_servings
0.72132
vioscreen_xylitol
0.060136999000000003
vioscreen_zinc
14.02819189
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily