American Gut Project; 10317.000030283
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3634170
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T22:47:56Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030283
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030283
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
24.09
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-07-15
collection month
July
collection season
Summer
collection time
11:00
collection_timestamp
2015-07-15 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
60.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
168.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
1ec346a3a3890ecff89a88f762b3a8b0cb872c54b09e4e4f8bb9869fa93afbb94c59f10b4fc64337fc59247cf5158c656d3ce2ccd57efc847a2ab0308a264427
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
53.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-1.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030283
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
bb1c42fe99dab04f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.052657538
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.44421955
vioscreen_addsugar
56.01038099
vioscreen_adsugtot
48.46076627
vioscreen_age
215.0
vioscreen_alanine
3.1512330769999997
vioscreen_alcohol
0.8615342229999999
vioscreen_alcohol_servings
0.052660000000000005
vioscreen_alphacar
1282.552997
vioscreen_alphtoce
10.00750749
vioscreen_alphtoco
8.829124304
vioscreen_arginine
3.5328777160000002
vioscreen_ash
17.16065791
vioscreen_aspartam
0.0
vioscreen_aspartic
6.258465994
vioscreen_avcarb
189.0126926
vioscreen_bcodeid
Not provided
vioscreen_betacar
5657.471918
vioscreen_betacryp
128.81423370000002
vioscreen_betaine
111.26272469999999
vioscreen_betatoco
0.281452043
vioscreen_biochana
0.019452055
vioscreen_bmi
Not provided
vioscreen_caffeine
319.0625642
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.46995
vioscreen_calcium_servings
2.59512
vioscreen_calories
1741.4630140000002
vioscreen_carbo
208.4777825
vioscreen_cholest
253.2732235
vioscreen_choline
324.69220889999997
vioscreen_clac9t11
0.108986308
vioscreen_clat10c12
0.01958904
vioscreen_copper
1.180301447
vioscreen_coumest
0.11813699400000001
vioscreen_cystine
0.8522190040000001
vioscreen_d_cheese
0.422657546
vioscreen_d_milk
0.831287708
vioscreen_d_tot_soym
1.469945286
vioscreen_d_total
1.469945286
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
1.431397153
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.618137307
vioscreen_discfat_oil
26.26594339
vioscreen_discfat_sol
36.53679366
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002191781
vioscreen_f_citmlb
0.49057533600000003
vioscreen_f_nj_citmlb
0.482328775
vioscreen_f_nj_other
0.964657467
vioscreen_f_nj_total
1.447041049
vioscreen_f_other
0.964657467
vioscreen_f_total
1.455287651
vioscreen_fat
75.15164277
vioscreen_fiber
19.44279083
vioscreen_fibh2o
5.74331456
vioscreen_fibinso
13.69852044
vioscreen_finished
7/13/15
vioscreen_fish_servings
3.61115
vioscreen_fol_deqv
419.6858733
vioscreen_fol_nat
276.1077269
vioscreen_fol_syn
84.38150685
vioscreen_formontn
0.002191781
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.9
vioscreen_fructose
16.09761478
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.032767351
vioscreen_g_total
5.020931881
vioscreen_g_whl
0.988137023
vioscreen_galactos
0.643643816
vioscreen_gammtoco
10.39852178
vioscreen_gender
false
vioscreen_genistn
1.606739786
vioscreen_glac
86.21854131
vioscreen_gltc
94.02466824
vioscreen_glucose
17.79315202
vioscreen_glutamic
12.96599957
vioscreen_glycine
2.631177928
vioscreen_glycitn
0.374273974
vioscreen_grams
2872.056849
vioscreen_hei2010_dairy
6.5
vioscreen_hei2010_empty_calories
13.0
vioscreen_hei2010_fatty_acids
4.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
7.9
vioscreen_hei2010_score
67.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.1
vioscreen_hei_score
71.0
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
13.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.9
vioscreen_height
Not provided
vioscreen_histidin
1.764603121
vioscreen_inositol
0.072931509
vioscreen_iron
10.40816299
vioscreen_isoleuc
2.987507023
vioscreen_isomalt
0.0
vioscreen_joules
7286.280822
vioscreen_juice_servings
0.01647
vioscreen_lactitol
0.0
vioscreen_lactose
14.30068493
vioscreen_legumes
0.18805477199999998
vioscreen_leucine
5.173013431
vioscreen_line_gi
393.0347603
vioscreen_low_fat_dairy_serving
0.26477
vioscreen_lutzeax
3341.9863010000004
vioscreen_lycopene
6272.969863
vioscreen_lysine
4.473781304
vioscreen_m_egg
0.6304383579999999
vioscreen_m_fish_hi
1.4344932240000001
vioscreen_m_fish_lo
0.623506896
vioscreen_m_frank
0.396109594
vioscreen_m_meat
0.120164385
vioscreen_m_mpf
3.2104110930000003
vioscreen_m_nutsd
0.65621919
vioscreen_m_organ
0.0
vioscreen_m_poult
0.636246564
vioscreen_m_soy
0.23468492100000002
vioscreen_magnes
308.9652397
vioscreen_maltitol
0.0
vioscreen_maltose
3.176520695
vioscreen_mangan
4.953889528
vioscreen_mannitol
0.36471235700000004
vioscreen_methhis3
10.18336968
vioscreen_methion
1.52632856
vioscreen_mfa141
0.020739725
vioscreen_mfa161
0.9740546240000001
vioscreen_mfa181
25.01988709
vioscreen_mfa201
0.440465682
vioscreen_mfa221
0.243671219
vioscreen_mfatot
26.87542273
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.829124304
vioscreen_nccglbr
152.26252140000003
vioscreen_nccglgr
106.5135381
vioscreen_niacin
18.63189079
vioscreen_niacineq
31.82596854
vioscreen_nitrogen
10.83569938
vioscreen_non_fried_fish_servings
3.61115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.533753612
vioscreen_oxalic
300.7859803
vioscreen_oxalicm
293.5589041
vioscreen_pantothe
4.772575316
vioscreen_pectins
3.0621090410000003
vioscreen_pfa182
14.04032802
vioscreen_pfa183
1.8327125030000002
vioscreen_pfa184
0.05569863
vioscreen_pfa204
0.12430137699999999
vioscreen_pfa205
0.181589059
vioscreen_pfa225
0.070520547
vioscreen_pfa226
0.393643774
vioscreen_pfatot
16.80586339
vioscreen_phenylal
2.987123421
vioscreen_phosphor
1133.949829
vioscreen_phytic
580.7151968999999
vioscreen_pinitol
0.022054795
vioscreen_potass
3030.031164
vioscreen_procdate
10/28/15
vioscreen_proline
4.242602205
vioscreen_protanim
42.21255084
vioscreen_protein
66.73192423
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.5167942
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
301.0
vioscreen_retinol
296.4307363
vioscreen_rgrain
4.149315068
vioscreen_ribofla
1.755643829
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.32441
vioscreen_satoco
0.0
vioscreen_selenium
102.09387840000001
vioscreen_serine
3.1810961580000003
vioscreen_sfa100
0.611726024
vioscreen_sfa120
1.408328707
vioscreen_sfa140
2.494766862
vioscreen_sfa160
12.84175407
vioscreen_sfa170
0.099561644
vioscreen_sfa180
5.768657695
vioscreen_sfa200
0.168602753
vioscreen_sfa220
0.16627399
vioscreen_sfa40
0.636356134
vioscreen_sfa60
0.396684913
vioscreen_sfa80
0.41263018
vioscreen_sfatot
25.27446757
vioscreen_sodium
3170.159589
vioscreen_sorbitol
1.054109673
vioscreen_srvid
20130.0
vioscreen_starch
73.10400792
vioscreen_started
7/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.36813463
vioscreen_sweet_servings
1.08111
vioscreen_tagatose
2.687451841
vioscreen_tfa161t
0.02260274
vioscreen_tfa181t
1.41706844
vioscreen_tfa182t
0.396958902
vioscreen_tgrain
5.007972362
vioscreen_thiamin
1.259315052
vioscreen_threonin
2.626547785
vioscreen_time
33.0
vioscreen_totaltfa
1.903808427
vioscreen_totcla
0.129561646
vioscreen_totfolat
360.48908389999997
vioscreen_totsugar
97.89397474
vioscreen_tryptoph
0.7912054190000001
vioscreen_tyrosine
2.3490958440000003
vioscreen_user_id
20130.0
vioscreen_v_drkgr
0.256986289
vioscreen_v_orange
0.254520531
vioscreen_v_other
0.6222739860000001
vioscreen_v_potato
0.11660273300000001
vioscreen_v_starcy
0.08487671599999999
vioscreen_v_tomato
0.414684933
vioscreen_v_total
1.75
vioscreen_valine
3.481068734
vioscreen_veg5_day
2.8
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.4
vioscreen_visit
1.0
vioscreen_vita_iu
11593.92877
vioscreen_vita_rae
826.6943493
vioscreen_vita_re
1356.957277
vioscreen_vitb12
4.270136585
vioscreen_vitb6
1.419973044
vioscreen_vitc
99.87294521
vioscreen_vitd
10.08504053
vioscreen_vitd2
0.003260274
vioscreen_vitd3
10.08186269
vioscreen_vitd_iu
403.40162139999995
vioscreen_vite_iu
13.15967332
vioscreen_vitk
163.8472496
vioscreen_water
2532.1907530000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.858657544
vioscreen_whole_grain_servings
0.98814
vioscreen_xylitol
0.022547947000000002
vioscreen_zinc
7.261285986
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)