American Gut Project; 10317.000031441
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634309
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031441
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031441
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
23.11
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-18
collection month
August
collection season
Summer
collection time
11:00
collection_timestamp
2015-08-18 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
176.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
13c3d5a82cd1b5d15c02dfd40ca261ca0c76e1185af46c167a701a65472db816508f9913399f11a43623aca66efec7e99cae2b1819cf9d4126d6b116a4ddf5bc
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.2
lowgrain_diet_type
false
lung disease
Not provided
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031441
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
533607c62a5d6e4a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.127314988
vioscreen_a_cal
274.8519264
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.448027478
vioscreen_addsugar
42.64095676
vioscreen_adsugtot
34.28123395
vioscreen_age
215.0
vioscreen_alanine
2.083589235
vioscreen_alcohol
32.43947721
vioscreen_alcohol_servings
2.12731
vioscreen_alphacar
1228.723373
vioscreen_alphtoce
10.53772541
vioscreen_alphtoco
9.706246656
vioscreen_arginine
2.610109596
vioscreen_ash
17.00512227
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
5.0579452719999995
vioscreen_avcarb
155.96010269999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
8169.032192000001
vioscreen_betacryp
125.1600492
vioscreen_betaine
51.16222175
vioscreen_betatoco
0.243808213
vioscreen_biochana
0.004410959
vioscreen_bmi
Not provided
vioscreen_caffeine
375.36091610000005
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.55986
vioscreen_calcium_servings
2.89721
vioscreen_calories
1763.654795
vioscreen_carbo
179.73375430000002
vioscreen_cholest
205.40607880000002
vioscreen_choline
285.19265839999997
vioscreen_clac9t11
0.11534246199999999
vioscreen_clat10c12
0.023616437999999997
vioscreen_copper
1.011862893
vioscreen_coumest
0.288465735
vioscreen_cystine
0.527479491
vioscreen_d_cheese
0.949150692
vioscreen_d_milk
0.6106575329999999
vioscreen_d_tot_soym
1.5598629469999998
vioscreen_d_total
1.5598629469999998
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.278684914
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.888904143
vioscreen_discfat_oil
24.48884846
vioscreen_discfat_sol
34.75397046
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007123289999999999
vioscreen_f_citmlb
0.08747945300000001
vioscreen_f_nj_citmlb
0.083863015
vioscreen_f_nj_other
1.709013806
vioscreen_f_nj_total
1.792876779
vioscreen_f_other
1.709013806
vioscreen_f_total
1.796465646
vioscreen_fat
76.04082834
vioscreen_fiber
23.77375054
vioscreen_fibh2o
9.500959172
vioscreen_fibinso
14.34136879
vioscreen_finished
8/13/15
vioscreen_fish_servings
0.82615
vioscreen_fol_deqv
360.9793664
vioscreen_fol_nat
240.336494
vioscreen_fol_syn
70.9572881
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.6
vioscreen_fructose
16.44405367
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.5131232689999999
vioscreen_g_total
1.05890411
vioscreen_g_whl
0.545753458
vioscreen_galactos
0.192273953
vioscreen_gammtoco
7.260767605
vioscreen_gender
false
vioscreen_genistn
0.10536987099999999
vioscreen_glac
74.14370184
vioscreen_gltc
81.44810574
vioscreen_glucose
17.11208262
vioscreen_glutamic
9.863671206
vioscreen_glycine
1.781040975
vioscreen_glycitn
0.000849315
vioscreen_grams
2615.957534
vioscreen_hei2010_dairy
6.8
vioscreen_hei2010_empty_calories
11.4
vioscreen_hei2010_fatty_acids
1.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.0
vioscreen_hei_meat_beans
7.6
vioscreen_hei_milk
6.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.2
vioscreen_hei_score
60.6
vioscreen_hei_sodium
8.2
vioscreen_hei_sol_fat_alc_add_sug
5.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
1.370356312
vioscreen_inositol
0.138849316
vioscreen_iron
9.272933166
vioscreen_isoleuc
2.216328827
vioscreen_isomalt
0.0
vioscreen_joules
7379.129451999999
vioscreen_juice_servings
0.007259999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
13.45131502
vioscreen_legumes
0.003287671
vioscreen_leucine
3.824822078
vioscreen_line_gi
369.9660103
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2131.949658
vioscreen_lycopene
4731.021575
vioscreen_lysine
3.208712476
vioscreen_m_egg
0.30613698
vioscreen_m_fish_hi
0.36441094399999996
vioscreen_m_fish_lo
0.106383567
vioscreen_m_frank
0.09087670699999999
vioscreen_m_meat
0.37758901899999997
vioscreen_m_mpf
1.272054761
vioscreen_m_nutsd
1.741424644
vioscreen_m_organ
0.0
vioscreen_m_poult
0.332849309
vioscreen_m_soy
0.0
vioscreen_magnes
310.7263057
vioscreen_maltitol
0.0
vioscreen_maltose
2.922986007
vioscreen_mangan
3.02857549
vioscreen_mannitol
0.437671191
vioscreen_methhis3
4.246712463
vioscreen_methion
1.03586292
vioscreen_mfa141
0.107397262
vioscreen_mfa161
1.091315032
vioscreen_mfa181
27.827862800000002
vioscreen_mfa201
0.37232875
vioscreen_mfa221
0.067123293
vioscreen_mfatot
29.67638324
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.706246656
vioscreen_nccglbr
113.6759953
vioscreen_nccglgr
79.51449058
vioscreen_niacin
16.28457299
vioscreen_niacineq
25.56745238
vioscreen_nitrogen
8.180767739
vioscreen_non_fried_fish_servings
0.82615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.685863087
vioscreen_oxalic
177.9221426
vioscreen_oxalicm
205.0145548
vioscreen_pantothe
6.532466021
vioscreen_pectins
4.112603007
vioscreen_pfa182
9.701589924
vioscreen_pfa183
1.4835616440000001
vioscreen_pfa184
0.016684931
vioscreen_pfa204
0.066794523
vioscreen_pfa205
0.053945202000000005
vioscreen_pfa225
0.02490411
vioscreen_pfa226
0.107397273
vioscreen_pfatot
11.51285049
vioscreen_phenylal
2.245671353
vioscreen_phosphor
1092.136387
vioscreen_phytic
474.2038955
vioscreen_pinitol
0.000273973
vioscreen_potass
3408.238014
vioscreen_procdate
10/28/15
vioscreen_proline
3.314548106
vioscreen_protanim
29.77936911
vioscreen_protein
50.26402504
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.48372753
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
206.0
vioscreen_retinol
431.34396399999997
vioscreen_rgrain
0.5641370379999999
vioscreen_ribofla
2.125972884
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.37967
vioscreen_satoco
0.0
vioscreen_selenium
60.81763699
vioscreen_serine
2.466246388
vioscreen_sfa100
0.830383552
vioscreen_sfa120
0.962274003
vioscreen_sfa140
3.604082165
vioscreen_sfa160
14.56446517
vioscreen_sfa170
0.082575341
vioscreen_sfa180
6.052520334
vioscreen_sfa200
0.216876701
vioscreen_sfa220
0.30460272
vioscreen_sfa40
1.011506883
vioscreen_sfa60
0.5676712660000001
vioscreen_sfa80
0.376547952
vioscreen_sfatot
29.08917755
vioscreen_sodium
1884.1523969999998
vioscreen_sorbitol
0.9595068529999999
vioscreen_srvid
20395.0
vioscreen_starch
42.42109643
vioscreen_started
8/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.4570366
vioscreen_sweet_servings
1.80988
vioscreen_tagatose
1.726630224
vioscreen_tfa161t
0.06868493099999999
vioscreen_tfa181t
1.23123286
vioscreen_tfa182t
0.368219161
vioscreen_tgrain
1.18860273
vioscreen_thiamin
0.9293425259999999
vioscreen_threonin
1.8532326890000002
vioscreen_time
33.0
vioscreen_totaltfa
1.697780661
vioscreen_totcla
0.140904121
vioscreen_totfolat
311.29375
vioscreen_totsugar
88.30850278
vioscreen_tryptoph
0.557205493
vioscreen_tyrosine
1.802958784
vioscreen_user_id
20395.0
vioscreen_v_drkgr
0.41438356200000004
vioscreen_v_orange
0.43123286
vioscreen_v_other
0.934849151
vioscreen_v_potato
0.523260289
vioscreen_v_starcy
0.06786301
vioscreen_v_tomato
0.46684929799999997
vioscreen_v_total
2.8385481319999997
vioscreen_valine
2.60706854
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.7
vioscreen_visit
1.0
vioscreen_vita_iu
16184.83699
vioscreen_vita_rae
1168.508476
vioscreen_vita_re
1905.673459
vioscreen_vitb12
2.947150578
vioscreen_vitb6
1.978657594
vioscreen_vitc
111.53782109999999
vioscreen_vitd
5.131616545
vioscreen_vitd2
0.000876712
vioscreen_vitd3
5.13076707
vioscreen_vitd_iu
205.2646618
vioscreen_vite_iu
14.43504254
vioscreen_vitk
124.14419950000001
vioscreen_water
2273.044863
vioscreen_weight
Not provided
vioscreen_wgrain
0.624465733
vioscreen_whole_grain_servings
0.54575
vioscreen_xylitol
0.057835618
vioscreen_zinc
8.048986649
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)