American Gut Project; 10317.000026526
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633452
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:29:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026526
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26526
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
22.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-29
collection month
May
collection season
Spring
collection time
08:50
collection_timestamp
2015-05-29 08:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
3.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
77b1ec2fe354d56428000b096c0e1630c3a3d7972cf7904a4ff1db183b322560179c0f138458c9ce213ed5257c8677fda2951a55a08dd747cc1969338e99670d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026526
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
af421905469eb7a3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.065561645
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.9713974210000003
vioscreen_addsugar
19.55997164
vioscreen_adsugtot
17.54887762
vioscreen_age
215.0
vioscreen_alanine
2.1561914730000002
vioscreen_alcohol
0.9200547309999999
vioscreen_alcohol_servings
0.06556000000000001
vioscreen_alphacar
2322.577911
vioscreen_alphtoce
10.86769785
vioscreen_alphtoco
10.038164199999999
vioscreen_arginine
3.0884655260000002
vioscreen_ash
16.32060279
vioscreen_aspartam
0.0
vioscreen_aspartic
4.7704660080000005
vioscreen_avcarb
124.38537029999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
9305.815068
vioscreen_betacryp
146.2654431
vioscreen_betaine
183.4218108
vioscreen_betatoco
0.36095890399999997
vioscreen_biochana
0.0269863
vioscreen_bmi
Not provided
vioscreen_caffeine
165.5295591
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.06584
vioscreen_calcium_servings
2.4377
vioscreen_calories
1471.407705
vioscreen_carbo
148.2667915
vioscreen_cholest
233.64492719999998
vioscreen_choline
268.87949489999994
vioscreen_clac9t11
0.14273972199999999
vioscreen_clat10c12
0.028191786
vioscreen_copper
1.34613706
vioscreen_coumest
0.029424657000000003
vioscreen_cystine
0.6291506410000001
vioscreen_d_cheese
0.790712372
vioscreen_d_milk
0.16816438600000003
vioscreen_d_tot_soym
1.065835697
vioscreen_d_total
1.065835697
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
1.066136943
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.1920274709999998
vioscreen_discfat_oil
24.35364405
vioscreen_discfat_sol
40.48203125
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002356164
vioscreen_f_citmlb
0.761314998
vioscreen_f_nj_citmlb
0.7098629470000001
vioscreen_f_nj_other
0.949917812
vioscreen_f_nj_total
1.659780842
vioscreen_f_other
0.952219171
vioscreen_f_total
1.7135342530000002
vioscreen_fat
79.24202697
vioscreen_fiber
23.88314962
vioscreen_fibh2o
5.2543828260000005
vioscreen_fibinso
18.68969526
vioscreen_finished
4/18/15
vioscreen_fish_servings
0.80923
vioscreen_fol_deqv
338.5909247
vioscreen_fol_nat
318.3701413
vioscreen_fol_syn
11.87925942
vioscreen_formontn
0.005643835
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
2.1
vioscreen_frtsumm
3.4
vioscreen_fructose
15.96986301
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.8215342059999999
vioscreen_g_total
3.1522190039999995
vioscreen_g_whl
2.330684965
vioscreen_galactos
0.27728766899999996
vioscreen_gammtoco
6.734385033
vioscreen_gender
false
vioscreen_genistn
1.244356087
vioscreen_glac
57.90355843
vioscreen_gltc
67.8937714
vioscreen_glucose
15.25775364
vioscreen_glutamic
9.915780848999999
vioscreen_glycine
1.955643829
vioscreen_glycitn
0.181753415
vioscreen_grams
2504.840068
vioscreen_hei2010_dairy
5.6
vioscreen_hei2010_empty_calories
13.4
vioscreen_hei2010_fatty_acids
1.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
68.1
vioscreen_hei_sodium
0.4
vioscreen_hei_sol_fat_alc_add_sug
13.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.322137033
vioscreen_inositol
0.092849324
vioscreen_iron
8.552848753
vioscreen_isoleuc
2.149424932
vioscreen_isomalt
0.0
vioscreen_joules
6156.367808
vioscreen_juice_servings
0.10753
vioscreen_lactitol
0.0
vioscreen_lactose
4.634137214
vioscreen_legumes
0.197698619
vioscreen_leucine
3.7441372810000004
vioscreen_line_gi
338.6722817
vioscreen_low_fat_dairy_serving
0.11197
vioscreen_lutzeax
5483.985616
vioscreen_lycopene
4469.760274
vioscreen_lysine
3.037671233
vioscreen_m_egg
0.596328777
vioscreen_m_fish_hi
0.362821898
vioscreen_m_fish_lo
0.09830137300000001
vioscreen_m_frank
0.13671233300000002
vioscreen_m_meat
0.310849292
vioscreen_m_mpf
0.998219195
vioscreen_m_nutsd
2.233123361
vioscreen_m_organ
0.0
vioscreen_m_poult
0.089506844
vioscreen_m_soy
0.092657523
vioscreen_magnes
319.95303939999997
vioscreen_maltitol
0.0
vioscreen_maltose
2.78397267
vioscreen_mangan
5.403644719
vioscreen_mannitol
0.400520596
vioscreen_methhis3
3.5985204410000002
vioscreen_methion
0.991534173
vioscreen_mfa141
0.09490409699999999
vioscreen_mfa161
1.052684962
vioscreen_mfa181
29.13317369
vioscreen_mfa201
0.358684885
vioscreen_mfa221
0.067178083
vioscreen_mfatot
30.91761023
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.038164199999999
vioscreen_nccglbr
93.66277825
vioscreen_nccglgr
65.51013485
vioscreen_niacin
13.37188972
vioscreen_niacineq
22.8953125
vioscreen_nitrogen
8.778767123
vioscreen_non_fried_fish_servings
0.80923
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.017506471
vioscreen_oxalic
377.5201627
vioscreen_oxalicm
377.7891267
vioscreen_pantothe
3.662438798
vioscreen_pectins
4.448219446
vioscreen_pfa182
10.41715071
vioscreen_pfa183
0.819314784
vioscreen_pfa184
0.016547944
vioscreen_pfa204
0.078383563
vioscreen_pfa205
0.050602743
vioscreen_pfa225
0.022383562000000003
vioscreen_pfa226
0.108821911
vioscreen_pfatot
11.56895869
vioscreen_phenylal
2.305945159
vioscreen_phosphor
975.8642979
vioscreen_phytic
749.2603596
vioscreen_pinitol
0.007205479
vioscreen_potass
2622.477568
vioscreen_procdate
10/28/15
vioscreen_proline
3.2325479589999997
vioscreen_protanim
23.0512896
vioscreen_protein
53.11123181
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.05818975
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
470.0
vioscreen_retinol
350.5568493
vioscreen_rgrain
1.031232776
vioscreen_ribofla
1.16876714
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.59641
vioscreen_satoco
0.0
vioscreen_selenium
84.57729024
vioscreen_serine
2.566109435
vioscreen_sfa100
0.903315045
vioscreen_sfa120
1.003315129
vioscreen_sfa140
3.3613983569999997
vioscreen_sfa160
15.44750642
vioscreen_sfa170
0.188575347
vioscreen_sfa180
6.44630244
vioscreen_sfa200
0.255150698
vioscreen_sfa220
0.36342459899999996
vioscreen_sfa40
1.111972757
vioscreen_sfa60
0.649753435
vioscreen_sfa80
0.417972554
vioscreen_sfatot
30.61748181
vioscreen_sodium
2882.751712
vioscreen_sorbitol
0.38843831100000004
vioscreen_srvid
18534.0
vioscreen_starch
47.12211045
vioscreen_started
4/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.4916417
vioscreen_sweet_servings
0.31024
vioscreen_tagatose
2.020575369
vioscreen_tfa161t
0.058000005
vioscreen_tfa181t
1.637506689
vioscreen_tfa182t
0.338438332
vioscreen_tgrain
3.0269042969999997
vioscreen_thiamin
0.928575239
vioscreen_threonin
1.8455342330000002
vioscreen_time
31.0
vioscreen_totaltfa
2.1674520409999998
vioscreen_totcla
0.171589013
vioscreen_totfolat
330.2493579
vioscreen_totsugar
63.89937393
vioscreen_tryptoph
0.572328792
vioscreen_tyrosine
1.745863154
vioscreen_user_id
18534.0
vioscreen_v_drkgr
0.271041118
vioscreen_v_orange
0.44030138799999996
vioscreen_v_other
0.634684942
vioscreen_v_potato
0.146301374
vioscreen_v_starcy
0.24216438199999998
vioscreen_v_tomato
0.289589033
vioscreen_v_total
2.024164236
vioscreen_valine
2.5437531769999997
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.9
vioscreen_visit
1.0
vioscreen_vita_iu
18736.01233
vioscreen_vita_rae
1228.912671
vioscreen_vita_re
2107.264212
vioscreen_vitb12
1.9634795719999998
vioscreen_vitb6
1.426438423
vioscreen_vitc
102.4922945
vioscreen_vitd
4.705863054
vioscreen_vitd2
0.000438356
vioscreen_vitd3
4.705424938
vioscreen_vitd_iu
188.2345222
vioscreen_vite_iu
14.97539865
vioscreen_vitk
205.43279109999997
vioscreen_water
2216.6566780000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.995671186
vioscreen_whole_grain_servings
2.33068
vioscreen_xylitol
0.026493151
vioscreen_zinc
7.518465057999999
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily