American Gut Project; 10317.000029202
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633675
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029202
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
25.0
age_corrected
25.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29202
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1990.0
bmi
18.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-25
collection month
June
collection season
Summer
collection time
10:22
collection_timestamp
2015-06-25 10:22
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
181.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Daily
homecooked_meals_frequency
Daily
host common name
human
host subject id
6fc7291da8aee13b839d173a6a4e60c1ff17c52ddc04240951cc2cd41b08c3f1e930d745c983aeb8bdaf5660d36a98e40f0e08f14ec0eac8452448a3d3fffb95
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.6
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
Yes
longitude
-82.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029202
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MI
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
6528710b489a32ee
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Never
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.0
vioscreen_addsugar
0.321287662
vioscreen_adsugtot
0.321287662
vioscreen_age
215.0
vioscreen_alanine
10.33249278
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
0.0
vioscreen_alphtoce
7.984520815
vioscreen_alphtoco
6.866712596
vioscreen_arginine
11.05068426
vioscreen_ash
21.84649508
vioscreen_aspartam
0.0
vioscreen_aspartic
16.73252221
vioscreen_avcarb
7.2112331439999995
vioscreen_bcodeid
Not provided
vioscreen_betacar
112.30629280000001
vioscreen_betacryp
40.0
vioscreen_betaine
57.27600599
vioscreen_betatoco
0.046109589000000006
vioscreen_biochana
0.0
vioscreen_bmi
Not provided
vioscreen_caffeine
71.03999893
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.26311999999999997
vioscreen_calcium_servings
1.38625
vioscreen_calories
2221.8988010000003
vioscreen_carbo
8.045972682999999
vioscreen_cholest
1928.877397
vioscreen_choline
1656.580137
vioscreen_clac9t11
0.355808248
vioscreen_clat10c12
0.134082198
vioscreen_copper
0.747287698
vioscreen_coumest
0.053260275
vioscreen_cystine
2.677013491
vioscreen_d_cheese
0.015342465
vioscreen_d_milk
0.24778082899999998
vioscreen_d_tot_soym
0.26312329
vioscreen_d_total
0.26312329
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.165260273
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.332383749
vioscreen_discfat_oil
5.8392879120000005
vioscreen_discfat_sol
72.99046982
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.0
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.0
vioscreen_f_other
0.0
vioscreen_f_total
0.0
vioscreen_fat
159.6604773
vioscreen_fiber
0.8347397059999999
vioscreen_fibh2o
0.8347397059999999
vioscreen_fibinso
0.0
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
216.91609590000002
vioscreen_fol_nat
216.91609590000002
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
0.004082192
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.0
vioscreen_g_total
0.0
vioscreen_g_whl
0.0
vioscreen_galactos
0.008575343000000001
vioscreen_gammtoco
10.6748776
vioscreen_gender
false
vioscreen_genistn
0.018000000000000002
vioscreen_glac
0.08643835400000001
vioscreen_gltc
0.08643835400000001
vioscreen_glucose
4.884082031
vioscreen_glutamic
25.89019157
vioscreen_glycine
8.504410584
vioscreen_glycitn
0.0
vioscreen_grams
3532.6328770000005
vioscreen_hei2010_dairy
0.9
vioscreen_hei2010_empty_calories
13.2
vioscreen_hei2010_fatty_acids
1.7
vioscreen_hei2010_fruit
0.0
vioscreen_hei2010_greens_beans
0.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
31.7
vioscreen_hei2010_sea_foods_plant_protiens
0.0
vioscreen_hei2010_sodium
0.9
vioscreen_hei2010_veg
0.0
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
0.0
vioscreen_hei_fruit
0.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.9
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
2.2
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
27.5
vioscreen_hei_sodium
0.8
vioscreen_hei_sol_fat_alc_add_sug
13.6
vioscreen_hei_veg
0.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
5.662027772
vioscreen_inositol
0.0
vioscreen_iron
13.60504067
vioscreen_isoleuc
8.572794708
vioscreen_isomalt
0.0
vioscreen_joules
9296.446575
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
2.177506789
vioscreen_legumes
0.0
vioscreen_leucine
14.45969874
vioscreen_line_gi
0.843753428
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1412.0
vioscreen_lycopene
0.0
vioscreen_lysine
14.47651969
vioscreen_m_egg
8.0
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
17.03227338
vioscreen_m_mpf
17.30145147
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.269178082
vioscreen_m_soy
0.0
vioscreen_magnes
185.207149
vioscreen_maltitol
0.0
vioscreen_maltose
0.0046575340000000005
vioscreen_mangan
0.23065752
vioscreen_mannitol
0.0
vioscreen_methhis3
66.55682256
vioscreen_methion
4.884821811
vioscreen_mfa141
0.7402739220000001
vioscreen_mfa161
4.762657186
vioscreen_mfa181
60.97229773
vioscreen_mfa201
0.294219176
vioscreen_mfa221
0.012136987
vioscreen_mfatot
66.83509204
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.866712596
vioscreen_nccglbr
1.3127397090000001
vioscreen_nccglgr
0.9184657270000001
vioscreen_niacin
30.61207994
vioscreen_niacineq
61.32024829
vioscreen_nitrogen
28.90745131
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.662958851
vioscreen_oxalic
2.77967128
vioscreen_oxalicm
10.33589068
vioscreen_pantothe
8.875725733
vioscreen_pectins
0.018000000000000002
vioscreen_pfa182
12.96884899
vioscreen_pfa183
1.484602753
vioscreen_pfa184
0.000027399999999999995
vioscreen_pfa204
0.7482466190000001
vioscreen_pfa205
0.021041097
vioscreen_pfa225
0.001972603
vioscreen_pfa226
0.155315065
vioscreen_pfatot
15.39671046
vioscreen_phenylal
7.7266842360000005
vioscreen_phosphor
1875.3357879999999
vioscreen_phytic
12.43200048
vioscreen_pinitol
0.0
vioscreen_potass
2505.471404
vioscreen_procdate
10/28/15
vioscreen_proline
7.743972737000001
vioscreen_protanim
177.62205690000002
vioscreen_protein
177.8350706
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
0.21301369899999997
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
365.0
vioscreen_retinol
769.4691781
vioscreen_rgrain
0.0
vioscreen_ribofla
3.236657882
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.0
vioscreen_selenium
278.1558005
vioscreen_serine
8.768602178
vioscreen_sfa100
0.524602728
vioscreen_sfa120
0.540054781
vioscreen_sfa140
3.5399179960000002
vioscreen_sfa160
35.7239726
vioscreen_sfa170
0.147589038
vioscreen_sfa180
16.49021698
vioscreen_sfa200
0.07093151
vioscreen_sfa220
0.057726027
vioscreen_sfa40
0.374438351
vioscreen_sfa60
0.22857534300000001
vioscreen_sfa80
0.146465761
vioscreen_sfatot
57.93287671
vioscreen_sodium
4254.12226
vioscreen_sorbitol
0.0
vioscreen_srvid
19969.0
vioscreen_starch
0.000657534
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
0.326273963
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0014246570000000002
vioscreen_tfa161t
0.150712324
vioscreen_tfa181t
5.870301798
vioscreen_tfa182t
0.564301415
vioscreen_tgrain
0.0
vioscreen_thiamin
1.6007399469999999
vioscreen_threonin
7.831561027999999
vioscreen_time
11.0
vioscreen_totaltfa
6.610575637
vioscreen_totcla
0.483123278
vioscreen_totfolat
216.91609590000002
vioscreen_totsugar
7.002082219
vioscreen_tryptoph
1.8390410959999999
vioscreen_tyrosine
6.345260327
vioscreen_user_id
19969.0
vioscreen_v_drkgr
0.0
vioscreen_v_orange
0.0
vioscreen_v_other
0.0
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.0
vioscreen_v_total
0.0
vioscreen_valine
9.356985097
vioscreen_veg5_day
0.0
vioscreen_vegetable_servings
0.0
vioscreen_vegsumm
0.0
vioscreen_visit
1.0
vioscreen_vita_iu
2785.2541100000003
vioscreen_vita_rae
780.49375
vioscreen_vita_re
791.5211472999999
vioscreen_vitb12
13.21336954
vioscreen_vitb6
2.611287658
vioscreen_vitc
0.159753418
vioscreen_vitd
12.67909621
vioscreen_vitd2
0.0
vioscreen_vitd3
12.67909621
vioscreen_vitd_iu
507.16384850000003
vioscreen_vite_iu
10.24295872
vioscreen_vitk
24.84104238
vioscreen_water
3217.336986
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.0
vioscreen_zinc
26.59983412
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never