American Gut Project; 10317.000027313
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633487
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:51Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027313
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27313
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
21.43
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Not provided
collection date
07/06/2015
collection month
July
collection season
Summer
collection time
10:30
collection_timestamp
2015-07-06 10:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
114.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
9b91d49ccb03bceb3f73a7cae6f5b032e28067ff6d56e42ef4bbbe319d1030b868241708f40f0e9ead026c38237c5966179e36dcadb1835fe2c74e320a5d3a8a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-89.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000027313
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MS
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
62517fe552767265
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.119095476
vioscreen_addsugar
24.41635542
vioscreen_adsugtot
23.07611034
vioscreen_age
215.0
vioscreen_alanine
4.3959994380000005
vioscreen_alcohol
0.010191781
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
69.69539277
vioscreen_alphtoce
15.73465727
vioscreen_alphtoco
13.31334145
vioscreen_arginine
5.888028414
vioscreen_ash
17.55739646
vioscreen_aspartam
0.0
vioscreen_aspartic
8.867371442
vioscreen_avcarb
157.6221426
vioscreen_bcodeid
Not provided
vioscreen_betacar
1807.9744859999998
vioscreen_betacryp
27.67958583
vioscreen_betaine
104.4341289
vioscreen_betatoco
0.782520535
vioscreen_biochana
0.0019178079999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
19.35484937
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.61847
vioscreen_calcium_servings
1.45992
vioscreen_calories
1932.7768839999999
vioscreen_carbo
177.065336
vioscreen_cholest
237.5599315
vioscreen_choline
322.27270980000003
vioscreen_clac9t11
0.12227397599999999
vioscreen_clat10c12
0.03441096
vioscreen_copper
1.618986449
vioscreen_coumest
0.001123288
vioscreen_cystine
1.190000184
vioscreen_d_cheese
0.329315039
vioscreen_d_milk
0.288876719
vioscreen_d_tot_soym
0.618465768
vioscreen_d_total
0.618465768
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.033150686
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.601972522
vioscreen_discfat_oil
34.02002622
vioscreen_discfat_sol
41.38389341
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.025561643999999998
vioscreen_f_nj_citmlb
0.023643836
vioscreen_f_nj_other
0.786794584
vioscreen_f_nj_total
0.810438433
vioscreen_f_other
0.786794584
vioscreen_f_total
0.8123561909999999
vioscreen_fat
101.4566353
vioscreen_fiber
19.43769799
vioscreen_fibh2o
5.305178122
vioscreen_fibinso
14.14309851
vioscreen_finished
7/3/15
vioscreen_fish_servings
1.75635
vioscreen_fol_deqv
285.72949489999996
vioscreen_fol_nat
184.3988656
vioscreen_fol_syn
59.52115261
vioscreen_formontn
0.0033424659999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.40731
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.6
vioscreen_fructose
12.77315122
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.9015618310000004
vioscreen_g_total
5.570465339
vioscreen_g_whl
2.668904176
vioscreen_galactos
0.107424645
vioscreen_gammtoco
20.713205
vioscreen_gender
false
vioscreen_genistn
0.04673973
vioscreen_glac
89.98207406
vioscreen_gltc
99.81269264
vioscreen_glucose
15.23857556
vioscreen_glutamic
16.73882037
vioscreen_glycine
4.424027785
vioscreen_glycitn
0.009150685
vioscreen_grams
3226.605137
vioscreen_hei2010_dairy
2.5
vioscreen_hei2010_empty_calories
17.5
vioscreen_hei2010_fatty_acids
8.9
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
0.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.7
vioscreen_hei2010_veg
3.5
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.2
vioscreen_hei_drk_g_org_veg_leg
0.6
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.3
vioscreen_hei_score
69.6
vioscreen_hei_sodium
4.6
vioscreen_hei_sol_fat_alc_add_sug
18.1
vioscreen_hei_veg
3.5
vioscreen_hei_whl_grains
4.6
vioscreen_height
Not provided
vioscreen_histidin
2.541150906
vioscreen_inositol
0.00958904
vioscreen_iron
11.02049377
vioscreen_isoleuc
3.8084372319999997
vioscreen_isomalt
0.0
vioscreen_joules
8086.739726000001
vioscreen_juice_servings
0.0038399999999999997
vioscreen_lactitol
0.0
vioscreen_lactose
4.126849449
vioscreen_legumes
0.00030137
vioscreen_leucine
6.653150417000001
vioscreen_line_gi
427.7660103
vioscreen_low_fat_dairy_serving
0.21996999999999997
vioscreen_lutzeax
432.21258560000007
vioscreen_lycopene
2549.694178
vioscreen_lysine
5.83934276
vioscreen_m_egg
0.304767117
vioscreen_m_fish_hi
0.255589044
vioscreen_m_fish_lo
0.746575342
vioscreen_m_frank
0.23832876100000003
vioscreen_m_meat
2.6956439289999996
vioscreen_m_mpf
5.960986328
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.0
vioscreen_m_poult
2.0248491680000003
vioscreen_m_soy
0.002520548
vioscreen_magnes
362.118536
vioscreen_maltitol
0.0
vioscreen_maltose
1.037068323
vioscreen_mangan
4.951889582
vioscreen_mannitol
0.072931514
vioscreen_methhis3
23.17882063
vioscreen_methion
1.986685306
vioscreen_mfa141
0.102410951
vioscreen_mfa161
1.151890334
vioscreen_mfa181
37.69288046
vioscreen_mfa201
0.537150636
vioscreen_mfa221
0.011369865
vioscreen_mfatot
39.630736299999995
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
13.31334145
vioscreen_nccglbr
131.279131
vioscreen_nccglgr
91.83110017
vioscreen_niacin
27.61775203
vioscreen_niacineq
43.95751017
vioscreen_nitrogen
14.87879388
vioscreen_non_fried_fish_servings
1.75635
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6655342
vioscreen_oxalic
214.5800514
vioscreen_oxalicm
223.21185789999998
vioscreen_pantothe
4.440466476
vioscreen_pectins
2.694493291
vioscreen_pfa182
23.97912297
vioscreen_pfa183
1.525616539
vioscreen_pfa184
0.003945205
vioscreen_pfa204
0.135287685
vioscreen_pfa205
0.031260274
vioscreen_pfa225
0.023260276
vioscreen_pfa226
0.082520545
vioscreen_pfatot
25.89230255
vioscreen_phenylal
3.894575396
vioscreen_phosphor
1239.219092
vioscreen_phytic
932.8328767
vioscreen_pinitol
0.001041096
vioscreen_potass
2646.283904
vioscreen_procdate
10/28/15
vioscreen_proline
5.047807417
vioscreen_protanim
56.71810788
vioscreen_protein
89.66744969999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.95049497
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
326.0
vioscreen_retinol
215.2093536
vioscreen_rgrain
2.632082085
vioscreen_ribofla
1.169424648
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.23981
vioscreen_satoco
0.0
vioscreen_selenium
153.9736622
vioscreen_serine
4.058163996
vioscreen_sfa100
0.391588979
vioscreen_sfa120
0.6646027870000001
vioscreen_sfa140
1.838547798
vioscreen_sfa160
15.55085081
vioscreen_sfa170
0.121561641
vioscreen_sfa180
6.62038407
vioscreen_sfa200
0.414849352
vioscreen_sfa220
0.715452095
vioscreen_sfa40
0.47761640200000005
vioscreen_sfa60
0.26005479
vioscreen_sfa80
0.18561645899999998
vioscreen_sfatot
27.75925995
vioscreen_sodium
2873.823288
vioscreen_sorbitol
0.165397247
vioscreen_srvid
20059.0
vioscreen_starch
101.3998395
vioscreen_started
7/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.77726081
vioscreen_sweet_servings
0.46301000000000003
vioscreen_tagatose
0.043342465
vioscreen_tfa161t
0.047863012
vioscreen_tfa181t
2.548328807
vioscreen_tfa182t
0.333479455
vioscreen_tgrain
5.786465914
vioscreen_thiamin
1.3806574569999999
vioscreen_threonin
3.3175062210000004
vioscreen_time
54.0
vioscreen_totaltfa
2.9730137660000002
vioscreen_totcla
0.157150676
vioscreen_totfolat
243.9199058
vioscreen_totsugar
48.24073202
vioscreen_tryptoph
0.9801918340000001
vioscreen_tyrosine
2.9998903039999996
vioscreen_user_id
20059.0
vioscreen_v_drkgr
0.017369863
vioscreen_v_orange
0.080027395
vioscreen_v_other
0.136191789
vioscreen_v_potato
1.1238629070000001
vioscreen_v_starcy
0.0004931509999999999
vioscreen_v_tomato
0.14342464300000002
vioscreen_v_total
1.501342439
vioscreen_valine
4.300411026
vioscreen_veg5_day
1.4
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
3.0
vioscreen_visit
1.0
vioscreen_vita_iu
3811.2955479999996
vioscreen_vita_rae
369.931464
vioscreen_vita_re
524.6527397
vioscreen_vitb12
3.3052881530000002
vioscreen_vitb6
2.1240550419999997
vioscreen_vitc
35.49271458
vioscreen_vitd
3.792383816
vioscreen_vitd2
0.001616438
vioscreen_vitd3
3.790849409
vioscreen_vitd_iu
151.69535259999998
vioscreen_vite_iu
19.86822159
vioscreen_vitk
47.92800193
vioscreen_water
2883.312671
vioscreen_weight
Not provided
vioscreen_wgrain
3.154356405
vioscreen_whole_grain_servings
2.6689
vioscreen_xylitol
0.012684933999999998
vioscreen_zinc
11.24186243
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)