American Gut Project; 10317.000023060
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632621
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T22:50:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023060
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23060
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
23.78
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
01/11/2015
collection month
January
collection season
Winter
collection time
17:00
collection_timestamp
2015-01-11 17:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
94.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Not provided
homecooked_meals_frequency
Daily
host common name
human
host subject id
80b0e5a7d5b01f73dea6f33123666a4c0addeaec5a9439714e068857e44d7166ba65007caa7f7e1650078ac6fc5017b4d29b31de37895acb054c311563208be2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
39.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023060
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
3130a2cb28ccce62
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.697808085
vioscreen_a_cal
206.9287885
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.89950771
vioscreen_addsugar
65.07495719
vioscreen_adsugtot
58.66230736
vioscreen_age
215.0
vioscreen_alanine
4.322822466
vioscreen_alcohol
25.87545216
vioscreen_alcohol_servings
1.6978099999999998
vioscreen_alphacar
747.0551370000001
vioscreen_alphtoce
15.68380512
vioscreen_alphtoco
13.07344686
vioscreen_arginine
4.685370626
vioscreen_ash
24.18748127
vioscreen_aspartam
0.0
vioscreen_aspartic
8.241204918
vioscreen_avcarb
231.44321490000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
4721.59589
vioscreen_betacryp
131.9818814
vioscreen_betaine
103.058476
vioscreen_betatoco
0.34884934100000003
vioscreen_biochana
0.010328766999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
86.44627569
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.94734
vioscreen_calcium_servings
4.62512
vioscreen_calories
2694.1681510000003
vioscreen_carbo
251.93428939999998
vioscreen_cholest
372.8107449
vioscreen_choline
440.47915240000003
vioscreen_clac9t11
0.225041073
vioscreen_clat10c12
0.044986302
vioscreen_copper
1.360246632
vioscreen_coumest
0.040356166
vioscreen_cystine
1.101506899
vioscreen_d_cheese
0.261178087
vioscreen_d_milk
2.178246401
vioscreen_d_tot_soym
2.9473425460000002
vioscreen_d_total
2.9473425460000002
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.402273936
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.288465526
vioscreen_discfat_oil
54.74419414
vioscreen_discfat_sol
61.11896939
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000465753
vioscreen_f_citmlb
0.889863064
vioscreen_f_nj_citmlb
0.884164471
vioscreen_f_nj_other
0.432876671
vioscreen_f_nj_total
1.317041183
vioscreen_f_other
0.432876671
vioscreen_f_total
1.322739776
vioscreen_fat
131.776509
vioscreen_fiber
20.44350787
vioscreen_fibh2o
5.31383575
vioscreen_fibinso
15.13989191
vioscreen_finished
1/11/15
vioscreen_fish_servings
3.09769
vioscreen_fol_deqv
529.6005137
vioscreen_fol_nat
243.85659249999998
vioscreen_fol_syn
167.9712757
vioscreen_formontn
0.0015616439999999998
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.31506999999999996
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
17.6785183
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.621369662
vioscreen_g_total
5.710328821
vioscreen_g_whl
1.088931567
vioscreen_galactos
0.86602733
vioscreen_gammtoco
19.10350225
vioscreen_gender
false
vioscreen_genistn
0.635671286
vioscreen_glac
102.63156040000001
vioscreen_gltc
110.6768729
vioscreen_glucose
17.75041337
vioscreen_glutamic
17.56016561
vioscreen_glycine
3.6276163180000003
vioscreen_glycitn
0.09446576300000001
vioscreen_grams
4583.221233
vioscreen_hei2010_dairy
8.4
vioscreen_hei2010_empty_calories
13.5
vioscreen_hei2010_fatty_acids
4.3
vioscreen_hei2010_fruit
3.1
vioscreen_hei2010_greens_beans
2.3
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.8
vioscreen_hei2010_veg
3.8
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.7
vioscreen_hei_drk_g_org_veg_leg
2.0
vioscreen_hei_fruit
3.1
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
8.8
vioscreen_hei_milk
8.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.2
vioscreen_hei_score
58.8
vioscreen_hei_sodium
3.9
vioscreen_hei_sol_fat_alc_add_sug
8.8
vioscreen_hei_veg
3.8
vioscreen_hei_whl_grains
1.3
vioscreen_height
Not provided
vioscreen_histidin
2.508657795
vioscreen_inositol
0.271506866
vioscreen_iron
14.89668236
vioscreen_isoleuc
4.2203837360000005
vioscreen_isomalt
0.0
vioscreen_joules
11272.39795
vioscreen_juice_servings
0.011479999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
34.96164116
vioscreen_legumes
0.061945207
vioscreen_leucine
7.387122084
vioscreen_line_gi
455.30757710000006
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
3401.772945
vioscreen_lycopene
3077.325
vioscreen_lysine
6.5941640360000005
vioscreen_m_egg
0.682438388
vioscreen_m_fish_hi
0.607452058
vioscreen_m_fish_lo
1.164082232
vioscreen_m_frank
0.07134246799999999
vioscreen_m_meat
1.797644043
vioscreen_m_mpf
4.620465673
vioscreen_m_nutsd
0.339890404
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9800822220000001
vioscreen_m_soy
0.022520546000000002
vioscreen_magnes
380.8441353
vioscreen_maltitol
0.0
vioscreen_maltose
2.858219178
vioscreen_mangan
3.491452068
vioscreen_mannitol
0.288575327
vioscreen_methhis3
15.45150631
vioscreen_methion
2.2010412759999998
vioscreen_mfa141
0.15602741
vioscreen_mfa161
1.6684931509999998
vioscreen_mfa181
49.47112051
vioscreen_mfa201
0.47024653200000005
vioscreen_mfa221
0.074164383
vioscreen_mfatot
52.10900578
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.65109161
vioscreen_nccglbr
181.01247859999998
vioscreen_nccglgr
126.628735
vioscreen_niacin
23.52890357
vioscreen_niacineq
40.04323363
vioscreen_nitrogen
14.65137254
vioscreen_non_fried_fish_servings
2.6701900000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.417397862
vioscreen_oxalic
186.1090111
vioscreen_oxalicm
172.077911
vioscreen_pantothe
6.341944697000001
vioscreen_pectins
3.085973285
vioscreen_pfa182
22.3907668
vioscreen_pfa183
3.084657267
vioscreen_pfa184
0.018821917
vioscreen_pfa204
0.133863005
vioscreen_pfa205
0.08468493099999999
vioscreen_pfa225
0.034821915
vioscreen_pfa226
0.195589039
vioscreen_pfatot
26.02911762
vioscreen_phenylal
4.138000321
vioscreen_phosphor
1657.2022259999999
vioscreen_phytic
506.040625
vioscreen_pinitol
0.007315069
vioscreen_potass
3316.273288
vioscreen_procdate
10/28/15
vioscreen_proline
6.1716435679999995
vioscreen_protanim
66.93624786
vioscreen_protein
90.69819135
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.7557256
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
630.0
vioscreen_retinol
667.9729452
vioscreen_rgrain
4.85208155
vioscreen_ribofla
2.583945246
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.2710700000000001
vioscreen_satoco
0.93860273
vioscreen_selenium
137.72412240000003
vioscreen_serine
4.457616853
vioscreen_sfa100
1.192547775
vioscreen_sfa120
2.076711994
vioscreen_sfa140
4.32452008
vioscreen_sfa160
22.91279431
vioscreen_sfa170
0.287534238
vioscreen_sfa180
9.89750709
vioscreen_sfa200
0.323945158
vioscreen_sfa220
0.20126029199999998
vioscreen_sfa40
1.435096051
vioscreen_sfa60
0.836849098
vioscreen_sfa80
0.611561689
vioscreen_sfatot
44.48484589
vioscreen_sodium
4213.373973
vioscreen_sorbitol
0.317397214
vioscreen_srvid
16842.0
vioscreen_starch
88.87328767
vioscreen_started
1/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.94637735
vioscreen_sweet_servings
0.98825
vioscreen_tagatose
4.525342466000001
vioscreen_tfa161t
0.040082197
vioscreen_tfa181t
3.123862907
vioscreen_tfa182t
0.5581095660000001
vioscreen_tgrain
6.09736997
vioscreen_thiamin
1.63797273
vioscreen_threonin
3.6349866889999998
vioscreen_time
20.0
vioscreen_totaltfa
3.753999559
vioscreen_totcla
0.270821914
vioscreen_totfolat
411.827911
vioscreen_totsugar
123.89353600000001
vioscreen_tryptoph
0.990383618
vioscreen_tyrosine
3.373342519
vioscreen_user_id
16842.0
vioscreen_v_drkgr
0.24849316300000002
vioscreen_v_orange
0.18471232399999998
vioscreen_v_other
1.070739579
vioscreen_v_potato
0.298383551
vioscreen_v_starcy
0.176602758
vioscreen_v_tomato
0.280958912
vioscreen_v_total
2.259890538
vioscreen_valine
4.978383856000001
vioscreen_veg5_day
3.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.5
vioscreen_visit
1.0
vioscreen_vita_iu
10827.8411
vioscreen_vita_rae
1098.067466
vioscreen_vita_re
1528.159932
vioscreen_vitb12
7.691067798
vioscreen_vitb6
2.064849435
vioscreen_vitc
129.7996896
vioscreen_vitd
11.61597282
vioscreen_vitd2
0.05161643900000001
vioscreen_vitd3
11.56438356
vioscreen_vitd_iu
464.63891270000005
vioscreen_vite_iu
19.79780608
vioscreen_vitk
188.7567851
vioscreen_water
4097.510959
vioscreen_weight
Not provided
vioscreen_wgrain
1.24523282
vioscreen_whole_grain_servings
1.08893
vioscreen_xylitol
0.053452060999999995
vioscreen_zinc
13.58057443
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)