American Gut Project; 10317.000030290
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633763
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030290
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030290
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
21.61
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
07:50
collection_timestamp
2015-07-07 07:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
49.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d1251f94d730fc276585b71eb11e34aa38422a73e5837de0c899527436ecd9a6cfcb40937dba42212240c42b2ec3f80d1ef662fe643bf305f24784333f3c6d36
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
50.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030290
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
25ea78e412d21dc5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.22758901899999998
vioscreen_a_cal
27.97520334
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.2404930640000003
vioscreen_addsugar
18.85564533
vioscreen_adsugtot
14.75117723
vioscreen_age
215.0
vioscreen_alanine
2.964630043
vioscreen_alcohol
3.5016441030000003
vioscreen_alcohol_servings
0.22759000000000001
vioscreen_alphacar
3900.3065070000002
vioscreen_alphtoce
19.9024909
vioscreen_alphtoco
18.47498662
vioscreen_arginine
4.804383829
vioscreen_ash
16.44331657
vioscreen_aspartam
0.0
vioscreen_aspartic
6.722163955
vioscreen_avcarb
105.30653899999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
12502.34521
vioscreen_betacryp
251.50669950000002
vioscreen_betaine
71.65023545
vioscreen_betatoco
0.6884931590000001
vioscreen_biochana
0.012630137
vioscreen_bmi
Not provided
vioscreen_caffeine
285.00235449999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.09523
vioscreen_calcium_servings
1.41134
vioscreen_calories
1582.207877
vioscreen_carbo
134.54253
vioscreen_cholest
142.95516909999998
vioscreen_choline
293.178018
vioscreen_clac9t11
0.093506873
vioscreen_clat10c12
0.026273976
vioscreen_copper
1.764822179
vioscreen_coumest
0.49564380399999997
vioscreen_cystine
0.883726021
vioscreen_d_cheese
0.029452057
vioscreen_d_milk
0.06569862900000001
vioscreen_d_tot_soym
0.589589033
vioscreen_d_total
0.095232883
vioscreen_d_yogurt
0.0
vioscreen_daidzein
5.1856167730000005
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.622575483
vioscreen_discfat_oil
47.14930972
vioscreen_discfat_sol
21.43183594
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.164054797
vioscreen_f_nj_citmlb
0.16027397300000001
vioscreen_f_nj_other
0.491726016
vioscreen_f_nj_total
0.6519726060000001
vioscreen_f_other
0.491726016
vioscreen_f_total
0.655780824
vioscreen_fat
93.51156892
vioscreen_fiber
29.23649133
vioscreen_fibh2o
6.412382946
vioscreen_fibinso
23.01769852
vioscreen_finished
7/2/15
vioscreen_fish_servings
1.58269
vioscreen_fol_deqv
454.94781680000006
vioscreen_fol_nat
441.4652825
vioscreen_fol_syn
7.923177975
vioscreen_formontn
0.004767123
vioscreen_fried_fish_servings
0.27481
vioscreen_fried_food_servings
0.049319999999999996
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.3
vioscreen_fructose
9.761807711
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.327616422
vioscreen_g_total
2.307370037
vioscreen_g_whl
1.9797535519999998
vioscreen_galactos
0.12775341699999998
vioscreen_gammtoco
11.36350733
vioscreen_gender
false
vioscreen_genistn
6.577781865
vioscreen_glac
37.61019371
vioscreen_gltc
45.12471105
vioscreen_glucose
10.37600064
vioscreen_glutamic
12.00690283
vioscreen_glycine
3.069506501
vioscreen_glycitn
0.74539728
vioscreen_grams
3662.7075340000006
vioscreen_hei2010_dairy
2.9
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
2.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.6
vioscreen_hei_score
70.7
vioscreen_hei_sodium
1.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.2
vioscreen_height
Not provided
vioscreen_histidin
1.595945426
vioscreen_inositol
0.086602736
vioscreen_iron
11.18517966
vioscreen_isoleuc
2.511561396
vioscreen_isomalt
0.0
vioscreen_joules
6619.957534
vioscreen_juice_servings
0.00759
vioscreen_lactitol
0.0
vioscreen_lactose
0.90709588
vioscreen_legumes
0.17978082899999998
vioscreen_leucine
4.4215342060000005
vioscreen_line_gi
250.54045380000002
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5860.577397
vioscreen_lycopene
4466.680479
vioscreen_lysine
3.563643448
vioscreen_m_egg
0.298986294
vioscreen_m_fish_hi
0.29498629600000004
vioscreen_m_fish_lo
0.607041116
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.990794561
vioscreen_m_mpf
2.250027424
vioscreen_m_nutsd
5.144493123999999
vioscreen_m_organ
0.0
vioscreen_m_poult
0.335972595
vioscreen_m_soy
0.873643849
vioscreen_magnes
417.33082189999993
vioscreen_maltitol
0.0
vioscreen_maltose
4.058822172
vioscreen_mangan
7.699232796
vioscreen_mannitol
0.425205471
vioscreen_methhis3
7.742711901
vioscreen_methion
1.1229315770000001
vioscreen_mfa141
0.045397259
vioscreen_mfa161
0.875424654
vioscreen_mfa181
39.71641428
vioscreen_mfa201
0.58484936
vioscreen_mfa221
0.036575341000000004
vioscreen_mfatot
41.43572613
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
18.47498662
vioscreen_nccglbr
73.82260809
vioscreen_nccglgr
51.63314962
vioscreen_niacin
19.36947908
vioscreen_niacineq
31.04813517
vioscreen_nitrogen
10.81665842
vioscreen_non_fried_fish_servings
1.30788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4953151759999999
vioscreen_oxalic
351.1465967
vioscreen_oxalicm
402.5313784
vioscreen_pantothe
4.263643782
vioscreen_pectins
5.895068359
vioscreen_pfa182
20.57364352
vioscreen_pfa183
1.341917608
vioscreen_pfa184
0.009561644000000001
vioscreen_pfa204
0.056794519
vioscreen_pfa205
0.039013701
vioscreen_pfa225
0.015041095
vioscreen_pfa226
0.090082195
vioscreen_pfatot
22.35211098
vioscreen_phenylal
2.817397193
vioscreen_phosphor
1090.728938
vioscreen_phytic
1130.649058
vioscreen_pinitol
0.034602743
vioscreen_potass
3146.343493
vioscreen_procdate
10/28/15
vioscreen_proline
3.130273772
vioscreen_protanim
20.05846533
vioscreen_protein
63.82912564
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
43.77211045
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
336.0
vioscreen_retinol
170.9916845
vioscreen_rgrain
0.379479479
vioscreen_ribofla
1.147835677
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.68592
vioscreen_satoco
0.0
vioscreen_selenium
102.51665240000001
vioscreen_serine
3.13569871
vioscreen_sfa100
0.397506839
vioscreen_sfa120
0.525451995
vioscreen_sfa140
1.53265732
vioscreen_sfa160
13.30224609
vioscreen_sfa170
0.115479456
vioscreen_sfa180
5.0095345280000005
vioscreen_sfa200
0.454493149
vioscreen_sfa220
0.818191737
vioscreen_sfa40
0.489013672
vioscreen_sfa60
0.295232841
vioscreen_sfa80
0.184684921
vioscreen_sfatot
23.55633027
vioscreen_sodium
2981.678425
vioscreen_sorbitol
0.39753426299999994
vioscreen_srvid
20038.0
vioscreen_starch
44.95589148
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.81468456
vioscreen_sweet_servings
0.13085
vioscreen_tagatose
0.581863027
vioscreen_tfa161t
0.021643836
vioscreen_tfa181t
0.9089589579999999
vioscreen_tfa182t
0.19186301
vioscreen_tgrain
2.36136993
vioscreen_thiamin
1.136082229
vioscreen_threonin
2.291890351
vioscreen_time
33.0
vioscreen_totaltfa
1.131013635
vioscreen_totcla
0.119726029
vioscreen_totfolat
449.38844180000007
vioscreen_totsugar
44.14633187
vioscreen_tryptoph
0.7011507220000001
vioscreen_tyrosine
1.992548025
vioscreen_user_id
20038.0
vioscreen_v_drkgr
1.2668767220000001
vioscreen_v_orange
0.658438361
vioscreen_v_other
1.231725991
vioscreen_v_potato
0.094109585
vioscreen_v_starcy
0.12273972400000001
vioscreen_v_tomato
0.331260242
vioscreen_v_total
3.7051784569999997
vioscreen_valine
2.90073978
vioscreen_veg5_day
7.5
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
7.4
vioscreen_visit
1.0
vioscreen_vita_iu
24865.80822
vioscreen_vita_rae
1385.847175
vioscreen_vita_re
2600.702397
vioscreen_vitb12
1.750602325
vioscreen_vitb6
1.868575256
vioscreen_vitc
196.3687072
vioscreen_vitd
2.9882471369999997
vioscreen_vitd2
0.436739736
vioscreen_vitd3
2.551534574
vioscreen_vitd_iu
119.52988549999999
vioscreen_vite_iu
27.578245399999997
vioscreen_vitk
352.065518
vioscreen_water
3363.134247
vioscreen_weight
Not provided
vioscreen_wgrain
1.9818356030000002
vioscreen_whole_grain_servings
1.97975
vioscreen_xylitol
0.034739732
vioscreen_zinc
9.882437928
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)