American Gut Project; 10317.000029169
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633281
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029169
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29169
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
27.37
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-23
collection month
June
collection season
Summer
collection time
09:50
collection_timestamp
2015-06-23 09:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
40.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
d9a8df0ea575135398897d882bbf74793ad2b468e2968ba47a23aa6c4aa234396e5b271b4fdb3292870f5fa39e3f250877f3034c8fb268d3f6c26bd129e9f1e5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029169
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OR
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
8ba56fef6c948227
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.06528767099999999
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.085644197
vioscreen_addsugar
24.32525953
vioscreen_adsugtot
22.00654564
vioscreen_age
215.0
vioscreen_alanine
3.0378632010000004
vioscreen_alcohol
0.915945142
vioscreen_alcohol_servings
0.06529
vioscreen_alphacar
2322.653596
vioscreen_alphtoce
11.42307096
vioscreen_alphtoco
10.567095199999999
vioscreen_arginine
3.722849221
vioscreen_ash
19.11180838
vioscreen_aspartam
0.0
vioscreen_aspartic
6.09528842
vioscreen_avcarb
156.69503419999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
12526.89589
vioscreen_betacryp
291.6253853
vioscreen_betaine
172.94865149999998
vioscreen_betatoco
0.275506843
vioscreen_biochana
0.017863014
vioscreen_bmi
Not provided
vioscreen_caffeine
1.736849181
vioscreen_calcium
true
vioscreen_calcium_avg
1500.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.07477
vioscreen_calcium_servings
1.59756
vioscreen_calories
1373.7454619999999
vioscreen_carbo
189.29985019999998
vioscreen_cholest
278.5143408
vioscreen_choline
372.4244007
vioscreen_clac9t11
0.025287672999999997
vioscreen_clat10c12
0.007150685
vioscreen_copper
1.474301356
vioscreen_coumest
0.029589038999999998
vioscreen_cystine
0.84019165
vioscreen_d_cheese
0.029945206000000002
vioscreen_d_milk
0.044767124000000005
vioscreen_d_tot_soym
0.074767126
vioscreen_d_total
0.074767126
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.181068483
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.333753445
vioscreen_discfat_oil
17.93643782
vioscreen_discfat_sol
13.21830319
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.005753424
vioscreen_f_citmlb
1.802712135
vioscreen_f_nj_citmlb
1.800821884
vioscreen_f_nj_other
1.9717810230000001
vioscreen_f_nj_total
3.7726304980000003
vioscreen_f_other
1.9717810230000001
vioscreen_f_total
3.7745207489999997
vioscreen_fat
46.07051584
vioscreen_fiber
32.60732021
vioscreen_fibh2o
6.902739726
vioscreen_fibinso
25.97276862
vioscreen_finished
6/23/15
vioscreen_fish_servings
1.0605799999999999
vioscreen_fol_deqv
442.51759419999996
vioscreen_fol_nat
378.9335188
vioscreen_fol_syn
37.38490743
vioscreen_formontn
0.003643835
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
5.0
vioscreen_frtsumm
7.5
vioscreen_fructose
35.78882706
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
1.354986321
vioscreen_g_total
3.297178002
vioscreen_g_whl
1.9421918480000002
vioscreen_galactos
0.295835626
vioscreen_gammtoco
7.33380846
vioscreen_gender
false
vioscreen_genistn
0.20728766
vioscreen_glac
70.06667915
vioscreen_gltc
80.65995291
vioscreen_glucose
30.653397899999998
vioscreen_glutamic
10.732056
vioscreen_glycine
2.7882193789999996
vioscreen_glycitn
0.03120548
vioscreen_grams
4014.497945
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
9.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
79.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.7
vioscreen_height
Not provided
vioscreen_histidin
1.5852054130000002
vioscreen_inositol
0.146876714
vioscreen_iron
10.6149588
vioscreen_isoleuc
2.655753191
vioscreen_isomalt
0.0
vioscreen_joules
5747.747945
vioscreen_juice_servings
0.00375
vioscreen_lactitol
0.0
vioscreen_lactose
0.525862979
vioscreen_legumes
0.059698633
vioscreen_leucine
4.21706844
vioscreen_line_gi
448.0321062
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4357.833904
vioscreen_lycopene
8385.644521
vioscreen_lysine
3.935178323
vioscreen_m_egg
1.024438309
vioscreen_m_fish_hi
0.153999997
vioscreen_m_fish_lo
0.45041094200000004
vioscreen_m_frank
0.0
vioscreen_m_meat
0.55545207
vioscreen_m_mpf
3.3377809289999996
vioscreen_m_nutsd
1.095534233
vioscreen_m_organ
0.0
vioscreen_m_poult
2.177945072
vioscreen_m_soy
0.040219176
vioscreen_magnes
306.90995289999995
vioscreen_maltitol
0.0
vioscreen_maltose
4.072492375
vioscreen_mangan
3.963780902
vioscreen_mannitol
0.7088767690000001
vioscreen_methhis3
12.26561697
vioscreen_methion
1.2940821820000001
vioscreen_mfa141
0.032301375
vioscreen_mfa161
0.7347123659999999
vioscreen_mfa181
16.88498636
vioscreen_mfa201
0.27153424800000003
vioscreen_mfa221
0.005726028
vioscreen_mfatot
18.05438517
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.567095199999999
vioscreen_nccglbr
126.6966503
vioscreen_nccglgr
88.62510167
vioscreen_niacin
18.45682524
vioscreen_niacineq
29.66717412
vioscreen_nitrogen
10.6005759
vioscreen_non_fried_fish_servings
1.0605799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.556027096
vioscreen_oxalic
172.1297945
vioscreen_oxalicm
176.39134199999998
vioscreen_pantothe
4.799397006
vioscreen_pectins
6.860437847999999
vioscreen_pfa182
10.88057376
vioscreen_pfa183
1.4291505580000001
vioscreen_pfa184
0.002
vioscreen_pfa204
0.167232879
vioscreen_pfa205
0.024027396
vioscreen_pfa225
0.021369862000000003
vioscreen_pfa226
0.080164384
vioscreen_pfatot
12.66687714
vioscreen_phenylal
2.532082419
vioscreen_phosphor
872.7934932000001
vioscreen_phytic
610.7346318
vioscreen_pinitol
0.001534247
vioscreen_potass
3048.521918
vioscreen_procdate
10/28/15
vioscreen_proline
3.0576168530000003
vioscreen_protanim
34.08547999
vioscreen_protein
64.80542594
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.72114994
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
376.0
vioscreen_retinol
115.88542379999998
vioscreen_rgrain
1.671753431
vioscreen_ribofla
1.276684821
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.75458
vioscreen_satoco
0.0
vioscreen_selenium
94.2270976
vioscreen_serine
2.728794715
vioscreen_sfa100
0.043260270999999996
vioscreen_sfa120
0.08841096
vioscreen_sfa140
0.35567125299999997
vioscreen_sfa160
6.846629522000001
vioscreen_sfa170
0.061808218
vioscreen_sfa180
2.586438156
vioscreen_sfa200
0.145315071
vioscreen_sfa220
0.215397268
vioscreen_sfa40
0.053315065999999994
vioscreen_sfa60
0.02739726
vioscreen_sfa80
0.026191782
vioscreen_sfatot
10.65345275
vioscreen_sodium
2862.785445
vioscreen_sorbitol
1.599369917
vioscreen_srvid
19953.0
vioscreen_starch
46.33377033
vioscreen_started
6/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.82396859
vioscreen_sweet_servings
0.0915
vioscreen_tagatose
0.212547929
vioscreen_tfa161t
0.011726028000000001
vioscreen_tfa181t
1.015835613
vioscreen_tfa182t
0.189808216
vioscreen_tgrain
3.213534086
vioscreen_thiamin
1.040876582
vioscreen_threonin
2.355588814
vioscreen_time
20.0
vioscreen_totaltfa
1.366164283
vioscreen_totcla
0.032547942999999996
vioscreen_totfolat
416.31840750000003
vioscreen_totsugar
93.83544521
vioscreen_tryptoph
0.674328697
vioscreen_tyrosine
1.8654245040000001
vioscreen_user_id
19953.0
vioscreen_v_drkgr
1.304684908
vioscreen_v_orange
0.617890408
vioscreen_v_other
1.665479519
vioscreen_v_potato
0.14109589
vioscreen_v_starcy
0.004821918
vioscreen_v_tomato
0.435013737
vioscreen_v_total
4.1690409619999995
vioscreen_valine
2.904383829
vioscreen_veg5_day
7.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.3
vioscreen_visit
1.0
vioscreen_vita_iu
23441.728769999998
vioscreen_vita_rae
1268.72089
vioscreen_vita_re
2421.560959
vioscreen_vitb12
1.72783571
vioscreen_vitb6
2.031726241
vioscreen_vitc
262.9252354
vioscreen_vitd
2.421178029
vioscreen_vitd2
0.001041096
vioscreen_vitd3
2.420191767
vioscreen_vitd_iu
96.84712115
vioscreen_vite_iu
15.76572533
vioscreen_vitk
294.1442423
vioscreen_water
3704.215411
vioscreen_weight
Not provided
vioscreen_wgrain
1.5417808219999998
vioscreen_whole_grain_servings
1.94219
vioscreen_xylitol
0.063479463
vioscreen_zinc
7.54539611
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
81.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily