American Gut Project; 10317.000025993
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633433
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000025993
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
25993
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1979.0
bmi
33.47
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/10/2015
collection month
June
collection season
Summer
collection time
10:00
collection_timestamp
2015-06-10 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
31.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
576da01660b477285c22112ee88c233700459f25ced36f1e359af62520e6aafcc7f06b9c1433a8bc9e4c231ae189f3563c2001693515d8ef81349ecee13b899b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
40.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-74.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000025993
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
983d8c349af1811c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Rarely (less than once/week)
vioscreen_a_bev
3.3281096160000003
vioscreen_a_cal
403.68613010000007
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.130164745
vioscreen_addsugar
17.77912297
vioscreen_adsugtot
16.24479345
vioscreen_age
215.0
vioscreen_alanine
3.09986288
vioscreen_alcohol
50.95325878
vioscreen_alcohol_servings
3.3281099999999997
vioscreen_alphacar
132.8099743
vioscreen_alphtoce
6.729287511
vioscreen_alphtoco
5.83662912
vioscreen_arginine
3.28904143
vioscreen_ash
14.13210884
vioscreen_aspartam
0.0
vioscreen_aspartic
5.172164959
vioscreen_avcarb
95.38781036
vioscreen_bcodeid
Not provided
vioscreen_betacar
3553.271918
vioscreen_betacryp
24.45199861
vioscreen_betaine
65.58641374
vioscreen_betatoco
0.23016436899999998
vioscreen_biochana
0.001260274
vioscreen_bmi
Not provided
vioscreen_caffeine
238.64497000000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.34784
vioscreen_calcium_servings
1.1647399999999999
vioscreen_calories
1629.743493
vioscreen_carbo
106.1361943
vioscreen_cholest
202.2176156
vioscreen_choline
250.88852740000002
vioscreen_clac9t11
0.162082191
vioscreen_clat10c12
0.043424660999999996
vioscreen_copper
0.698137006
vioscreen_coumest
0.177534255
vioscreen_cystine
0.7231780590000001
vioscreen_d_cheese
0.23293151899999998
vioscreen_d_milk
0.114904116
vioscreen_d_tot_soym
0.347835635
vioscreen_d_total
0.347835635
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.20057534
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.856575075
vioscreen_discfat_oil
18.50238388
vioscreen_discfat_sol
32.79526167
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.08169862900000001
vioscreen_f_nj_citmlb
0.079917814
vioscreen_f_nj_other
0.48852054100000003
vioscreen_f_nj_total
0.568438344
vioscreen_f_other
0.48852054100000003
vioscreen_f_total
0.570246574
vioscreen_fat
71.21111944
vioscreen_fiber
10.74846426
vioscreen_fibh2o
5.4146852260000005
vioscreen_fibinso
5.322657588
vioscreen_finished
6/10/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
200.6356164
vioscreen_fol_nat
97.09084974
vioscreen_fol_syn
60.85605736
vioscreen_formontn
0.000246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.16435999999999998
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.1
vioscreen_fructose
7.962355522
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.9700549819999997
vioscreen_g_total
2.9793701169999998
vioscreen_g_whl
0.009315069
vioscreen_galactos
0.174164404
vioscreen_gammtoco
7.8364378210000005
vioscreen_gender
false
vioscreen_genistn
0.09265753300000001
vioscreen_glac
44.04098887
vioscreen_gltc
47.20654431
vioscreen_glucose
8.010985659
vioscreen_glutamic
9.913259846
vioscreen_glycine
2.9283831869999997
vioscreen_glycitn
0.005534247
vioscreen_grams
2968.645548
vioscreen_hei2010_dairy
1.6
vioscreen_hei2010_empty_calories
7.7
vioscreen_hei2010_fatty_acids
2.5
vioscreen_hei2010_fruit
2.2
vioscreen_hei2010_greens_beans
1.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.9
vioscreen_hei2010_score
44.6
vioscreen_hei2010_sea_foods_plant_protiens
0.0
vioscreen_hei2010_sodium
7.4
vioscreen_hei2010_veg
2.9
vioscreen_hei2010_whole_fruit
4.4
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
2.2
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.6
vioscreen_hei_non_juice_frt
4.4
vioscreen_hei_oils
9.5
vioscreen_hei_sat_fat
1.3
vioscreen_hei_score
44.5
vioscreen_hei_sodium
5.9
vioscreen_hei_sol_fat_alc_add_sug
1.9
vioscreen_hei_veg
2.9
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.767315089
vioscreen_inositol
0.21715067
vioscreen_iron
8.769342626
vioscreen_isoleuc
2.502931527
vioscreen_isomalt
0.0
vioscreen_joules
6818.850684999999
vioscreen_juice_servings
0.00359
vioscreen_lactitol
0.0
vioscreen_lactose
2.0088218380000002
vioscreen_legumes
0.0
vioscreen_leucine
4.403122993
vioscreen_line_gi
190.8806507
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
737.3226884
vioscreen_lycopene
4984.014384
vioscreen_lysine
4.2135066619999995
vioscreen_m_egg
0.07265753
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.161835616
vioscreen_m_meat
4.931479425
vioscreen_m_mpf
5.224136812
vioscreen_m_nutsd
0.01030137
vioscreen_m_organ
0.0
vioscreen_m_poult
0.13084931
vioscreen_m_soy
0.000219178
vioscreen_magnes
183.71568919999999
vioscreen_maltitol
0.0
vioscreen_maltose
1.7918905180000002
vioscreen_mangan
1.591424477
vioscreen_mannitol
0.243643857
vioscreen_methhis3
22.89542487
vioscreen_methion
1.354438426
vioscreen_mfa141
0.15136986300000002
vioscreen_mfa161
1.352054962
vioscreen_mfa181
24.28643782
vioscreen_mfa201
0.201315078
vioscreen_mfa221
0.001479452
vioscreen_mfatot
26.12147902
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
5.83662912
vioscreen_nccglbr
83.97953767
vioscreen_nccglgr
58.75955694
vioscreen_niacin
15.40627676
vioscreen_niacineq
24.37712168
vioscreen_nitrogen
9.266273812
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.249534293
vioscreen_oxalic
90.86439426
vioscreen_oxalicm
81.43959225
vioscreen_pantothe
3.8711776939999996
vioscreen_pectins
1.481369896
vioscreen_pfa182
11.86457486
vioscreen_pfa183
1.234219151
vioscreen_pfa184
0.000109589
vioscreen_pfa204
0.065287676
vioscreen_pfa205
0.0030136990000000003
vioscreen_pfa225
0.01
vioscreen_pfa226
0.003013698
vioscreen_pfatot
13.22293049
vioscreen_phenylal
2.340219158
vioscreen_phosphor
747.423887
vioscreen_phytic
262.42397259999996
vioscreen_pinitol
0.000219178
vioscreen_potass
2095.114897
vioscreen_procdate
10/28/15
vioscreen_proline
3.1649039489999997
vioscreen_protanim
47.14778468
vioscreen_protein
57.23060253
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
10.0833155
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
396.0
vioscreen_retinol
176.35795159999998
vioscreen_rgrain
2.405808373
vioscreen_ribofla
1.375972716
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.33216
vioscreen_satoco
0.0
vioscreen_selenium
73.46797945
vioscreen_serine
2.32419166
vioscreen_sfa100
0.583369927
vioscreen_sfa120
0.6853424909999999
vioscreen_sfa140
2.374109221
vioscreen_sfa160
13.75975492
vioscreen_sfa170
0.155397253
vioscreen_sfa180
6.509096747
vioscreen_sfa200
0.105917797
vioscreen_sfa220
0.04361643900000001
vioscreen_sfa40
0.6995890579999999
vioscreen_sfa60
0.411917825
vioscreen_sfa80
0.260520559
vioscreen_sfatot
25.72925674
vioscreen_sodium
2174.640411
vioscreen_sorbitol
0.567890408
vioscreen_srvid
18864.0
vioscreen_starch
44.50449219
vioscreen_started
6/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.57342279
vioscreen_sweet_servings
0.37643000000000004
vioscreen_tagatose
0.30449314899999996
vioscreen_tfa161t
0.048575346
vioscreen_tfa181t
1.924849001
vioscreen_tfa182t
0.315917822
vioscreen_tgrain
3.057643943
vioscreen_thiamin
1.005643829
vioscreen_threonin
2.2435888
vioscreen_time
12.0
vioscreen_totaltfa
2.296082045
vioscreen_totcla
0.205397264
vioscreen_totfolat
157.9469071
vioscreen_totsugar
32.30153039
vioscreen_tryptoph
0.537780845
vioscreen_tyrosine
1.851561664
vioscreen_user_id
18864.0
vioscreen_v_drkgr
0.067917811
vioscreen_v_orange
0.170273977
vioscreen_v_other
0.352164365
vioscreen_v_potato
0.255095892
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.180219175
vioscreen_v_total
1.025671052
vioscreen_valine
2.783862806
vioscreen_veg5_day
1.3
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.1
vioscreen_visit
1.0
vioscreen_vita_iu
6642.10137
vioscreen_vita_rae
479.01776540000003
vioscreen_vita_re
781.6755992999999
vioscreen_vitb12
3.219178082
vioscreen_vitb6
1.281041143
vioscreen_vitc
34.00679313
vioscreen_vitd
1.543835616
vioscreen_vitd2
0.000630137
vioscreen_vitd3
1.5432329569999998
vioscreen_vitd_iu
61.75342466
vioscreen_vite_iu
8.679506234
vioscreen_vitk
60.59797731
vioscreen_water
2688.008048
vioscreen_weight
Not provided
vioscreen_wgrain
0.651862994
vioscreen_whole_grain_servings
0.00932
vioscreen_xylitol
0.047972598
vioscreen_zinc
9.22200008
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
83.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)