American Gut Project; 10317.000028078
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633555
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028078
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28078
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
23.66
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-24
collection month
June
collection season
Summer
collection time
07:25
collection_timestamp
2015-06-24 07:25
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
16.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
2363bb70a6f65afb94fea80e2d41fb44457d6569b1254ba163d84bf0ed6f05eb0cf1c3f1f58c3894a2ea0c41a2235a9f0f1f14f221065fa20c3acffeb36c2e74
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
52.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028078
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
7bb7d6d8aa647a8a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.466054796
vioscreen_a_cal
57.61772795
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.078163795
vioscreen_addsugar
37.25213506
vioscreen_adsugtot
33.30550888
vioscreen_age
215.0
vioscreen_alanine
2.218849161
vioscreen_alcohol
6.830986462
vioscreen_alcohol_servings
0.46605
vioscreen_alphacar
552.4398116
vioscreen_alphtoce
5.174273932
vioscreen_alphtoco
4.46356151
vioscreen_arginine
2.397698389
vioscreen_ash
11.63219178
vioscreen_aspartam
0.0
vioscreen_aspartic
4.11342439
vioscreen_avcarb
150.4698523
vioscreen_bcodeid
Not provided
vioscreen_betacar
2405.193836
vioscreen_betacryp
166.1888164
vioscreen_betaine
154.4679259
vioscreen_betatoco
0.196575342
vioscreen_biochana
0.0029315070000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
132.1015304
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9842700000000001
vioscreen_calcium_servings
2.2305200000000003
vioscreen_calories
1234.995034
vioscreen_carbo
165.2427333
vioscreen_cholest
106.3640732
vioscreen_choline
189.131464
vioscreen_clac9t11
0.044986302
vioscreen_clat10c12
0.013917809
vioscreen_copper
0.810575302
vioscreen_coumest
0.012356165
vioscreen_cystine
0.7013698629999999
vioscreen_d_cheese
0.244109585
vioscreen_d_milk
0.36578080700000004
vioscreen_d_tot_soym
0.9842739159999999
vioscreen_d_total
0.9842739159999999
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.059726031
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.404630144
vioscreen_discfat_oil
12.62547892
vioscreen_discfat_sol
14.93630271
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.356137001
vioscreen_f_nj_citmlb
0.355917818
vioscreen_f_nj_other
0.5419726229999999
vioscreen_f_nj_total
0.897917781
vioscreen_f_other
0.5419726229999999
vioscreen_f_total
0.8981369229999999
vioscreen_fat
39.09386505
vioscreen_fiber
14.73572881
vioscreen_fibh2o
5.2633695419999995
vioscreen_fibinso
9.465617642
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
401.0916952
vioscreen_fol_nat
172.3575878
vioscreen_fol_syn
134.5673159
vioscreen_formontn
0.002246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.8
vioscreen_fructose
12.33931534
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.577095931
vioscreen_g_total
5.841150738
vioscreen_g_whl
2.263972536
vioscreen_galactos
0.564493174
vioscreen_gammtoco
6.178575824
vioscreen_gender
false
vioscreen_genistn
0.073972608
vioscreen_glac
80.95191032
vioscreen_gltc
88.55293771
vioscreen_glucose
11.21887776
vioscreen_glutamic
10.06049337
vioscreen_glycine
2.015616472
vioscreen_glycitn
0.0027397259999999996
vioscreen_grams
2251.22774
vioscreen_hei2010_dairy
6.1
vioscreen_hei2010_empty_calories
18.1
vioscreen_hei2010_fatty_acids
6.5
vioscreen_hei2010_fruit
4.5
vioscreen_hei2010_greens_beans
2.3
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
5.6
vioscreen_hei2010_score
73.2
vioscreen_hei2010_sea_foods_plant_protiens
0.1
vioscreen_hei2010_sodium
5.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
4.5
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
6.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
9.0
vioscreen_hei_score
78.7
vioscreen_hei_sodium
4.5
vioscreen_hei_sol_fat_alc_add_sug
15.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.317808136
vioscreen_inositol
0.03761644
vioscreen_iron
10.56106593
vioscreen_isoleuc
2.122767117
vioscreen_isomalt
0.0
vioscreen_joules
5167.219178
vioscreen_juice_servings
0.00044
vioscreen_lactitol
0.0
vioscreen_lactose
10.35512294
vioscreen_legumes
0.000630137
vioscreen_leucine
3.675315042
vioscreen_line_gi
367.9445205
vioscreen_low_fat_dairy_serving
0.67986
vioscreen_lutzeax
940.8585616
vioscreen_lycopene
4519.758562
vioscreen_lysine
3.133862974
vioscreen_m_egg
0.132493152
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.569013705
vioscreen_m_meat
1.349534293
vioscreen_m_mpf
2.546657615
vioscreen_m_nutsd
0.010410959000000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.628109574
vioscreen_m_soy
0.000465753
vioscreen_magnes
216.8731164
vioscreen_maltitol
0.0
vioscreen_maltose
2.8495889739999996
vioscreen_mangan
4.099205038
vioscreen_mannitol
0.31646578
vioscreen_methhis3
9.334795056
vioscreen_methion
1.077917815
vioscreen_mfa141
0.072630138
vioscreen_mfa161
0.5963835829999999
vioscreen_mfa181
14.27928751
vioscreen_mfa201
0.172383557
vioscreen_mfa221
0.001780822
vioscreen_mfatot
15.19241091
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
4.46356151
vioscreen_nccglbr
127.6412885
vioscreen_nccglgr
89.28049551
vioscreen_niacin
14.49638404
vioscreen_niacineq
23.24087382
vioscreen_nitrogen
8.002163822
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.281863027
vioscreen_oxalic
124.67137199999999
vioscreen_oxalicm
113.7403896
vioscreen_pantothe
3.248931132
vioscreen_pectins
2.091315784
vioscreen_pfa182
7.286905367
vioscreen_pfa183
1.255835379
vioscreen_pfa184
0.00030137
vioscreen_pfa204
0.059999999000000005
vioscreen_pfa205
0.00630137
vioscreen_pfa225
0.007095891
vioscreen_pfa226
0.012575342
vioscreen_pfatot
8.666521966
vioscreen_phenylal
2.164711981
vioscreen_phosphor
840.7594177999999
vioscreen_phytic
461.06840750000003
vioscreen_pinitol
0.007945206
vioscreen_potass
2037.096575
vioscreen_procdate
10/28/15
vioscreen_proline
3.320246615
vioscreen_protanim
29.64471586
vioscreen_protein
49.16375214
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.51303912
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
371.0
vioscreen_retinol
174.5419414
vioscreen_rgrain
3.788300982
vioscreen_ribofla
1.302547925
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.1826
vioscreen_satoco
0.0
vioscreen_selenium
73.46772259999999
vioscreen_serine
2.2185204069999998
vioscreen_sfa100
0.212027396
vioscreen_sfa120
0.819671296
vioscreen_sfa140
0.980630201
vioscreen_sfa160
6.163069216
vioscreen_sfa170
0.033232877
vioscreen_sfa180
2.845451961
vioscreen_sfa200
0.072602735
vioscreen_sfa220
0.044767129
vioscreen_sfa40
0.13594520300000001
vioscreen_sfa60
0.072493148
vioscreen_sfa80
0.145397259
vioscreen_sfatot
11.68427467
vioscreen_sodium
1850.3077050000002
vioscreen_sorbitol
0.33583562100000003
vioscreen_srvid
19960.0
vioscreen_starch
69.53043664
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.30515036
vioscreen_sweet_servings
0.5
vioscreen_tagatose
2.887369903
vioscreen_tfa161t
0.026054795
vioscreen_tfa181t
1.3790410290000001
vioscreen_tfa182t
0.249671267
vioscreen_tgrain
5.920136585
vioscreen_thiamin
1.2665753929999999
vioscreen_threonin
1.802547925
vioscreen_time
17.0
vioscreen_totaltfa
1.7118082119999998
vioscreen_totcla
0.059178083
vioscreen_totfolat
306.9249144
vioscreen_totsugar
68.47292915
vioscreen_tryptoph
0.524438309
vioscreen_tyrosine
1.65416427
vioscreen_user_id
19960.0
vioscreen_v_drkgr
0.112849311
vioscreen_v_orange
0.068328769
vioscreen_v_other
0.41205482
vioscreen_v_potato
0.18923287600000002
vioscreen_v_starcy
0.0010136989999999999
vioscreen_v_tomato
0.732821864
vioscreen_v_total
1.516328827
vioscreen_valine
2.507753304
vioscreen_veg5_day
3.3
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.0
vioscreen_visit
1.0
vioscreen_vita_iu
5189.750342
vioscreen_vita_rae
404.91780819999997
vioscreen_vita_re
635.2940068
vioscreen_vitb12
2.6561647180000003
vioscreen_vitb6
1.222301326
vioscreen_vitc
95.60433433
vioscreen_vitd
2.245287919
vioscreen_vitd2
0.000356164
vioscreen_vitd3
2.244931741
vioscreen_vitd_iu
89.81151675
vioscreen_vite_iu
6.656684771
vioscreen_vitk
59.16155822
vioscreen_water
1993.7883559999998
vioscreen_weight
Not provided
vioscreen_wgrain
2.131863194
vioscreen_whole_grain_servings
2.26397
vioscreen_xylitol
0.011479451000000002
vioscreen_zinc
8.219234268
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)