American Gut Project; 10317.000026590
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632751
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:35Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026590
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26590
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
23.41
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/06/2015
collection month
April
collection season
Spring
collection time
05:10
collection_timestamp
2015-04-06 05:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
20.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
69de2bec112612803a3fd9beb70994bf587324e672d5955d0fd73d7e932ac8b4ae4ca110a9d5b03d96b45e819a0f7143b89795192463965bcd8d58e372efeb81
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-124.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026590
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
f0823bea6df8a967
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.069780742
vioscreen_addsugar
10.33224663
vioscreen_adsugtot
9.620246281
vioscreen_age
215.0
vioscreen_alanine
3.044903815
vioscreen_alcohol
0.000410959
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
2207.34863
vioscreen_alphtoce
9.790493231000001
vioscreen_alphtoco
9.109698068
vioscreen_arginine
3.642082152
vioscreen_ash
23.05438249
vioscreen_aspartam
0.0
vioscreen_aspartic
6.294547972
vioscreen_avcarb
86.74380351
vioscreen_bcodeid
Not provided
vioscreen_betacar
14815.46575
vioscreen_betacryp
144.10227949999998
vioscreen_betaine
18.00928805
vioscreen_betatoco
0.153232867
vioscreen_biochana
0.005424658000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
170.7544628
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.44912
vioscreen_calcium_servings
4.08044
vioscreen_calories
1748.12911
vioscreen_carbo
108.88505990000002
vioscreen_cholest
743.5217466
vioscreen_choline
597.8285531
vioscreen_clac9t11
0.469808249
vioscreen_clat10c12
0.08312328299999999
vioscreen_copper
2.22156163
vioscreen_coumest
0.10967123
vioscreen_cystine
0.822904237
vioscreen_d_cheese
0.36572604200000003
vioscreen_d_milk
2.0833971
vioscreen_d_tot_soym
2.449123268
vioscreen_d_total
2.449123268
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.13712328599999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.950575403
vioscreen_discfat_oil
7.855781116
vioscreen_discfat_sol
101.46498290000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.9742466759999999
vioscreen_f_nj_citmlb
0.971479526
vioscreen_f_nj_other
0.684246575
vioscreen_f_nj_total
1.655726101
vioscreen_f_other
0.684246575
vioscreen_f_total
1.658493251
vioscreen_fat
122.1430116
vioscreen_fiber
22.14200021
vioscreen_fibh2o
5.121507117
vioscreen_fibinso
17.25268488
vioscreen_finished
4/5/15
vioscreen_fish_servings
1.07212
vioscreen_fol_deqv
439.0589897
vioscreen_fol_nat
439.0589897
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0037260270000000002
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.3
vioscreen_fructose
13.47649294
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.05249315
vioscreen_g_total
0.05249315
vioscreen_g_whl
0.0
vioscreen_galactos
0.123917797
vioscreen_gammtoco
6.118987452000001
vioscreen_gender
false
vioscreen_genistn
0.043232879
vioscreen_glac
27.246875
vioscreen_gltc
33.26753264
vioscreen_glucose
11.7487385
vioscreen_glutamic
11.4431761
vioscreen_glycine
2.324356037
vioscreen_glycitn
0.0
vioscreen_grams
4155.298288
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
0.0
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
50.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
3.7
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
43.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.748959058
vioscreen_inositol
0.231945195
vioscreen_iron
8.619259685
vioscreen_isoleuc
3.183479372
vioscreen_isomalt
0.0
vioscreen_joules
7314.179451999999
vioscreen_juice_servings
0.005529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
26.00942316
vioscreen_legumes
0.0
vioscreen_leucine
5.358547932
vioscreen_line_gi
250.60633560000002
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
17469.60822
vioscreen_lycopene
87.23427868
vioscreen_lysine
4.788602981
vioscreen_m_egg
2.001862994
vioscreen_m_fish_hi
0.610931522
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.7282739930000002
vioscreen_m_nutsd
1.1166301570000001
vioscreen_m_organ
0.586547935
vioscreen_m_poult
0.530794536
vioscreen_m_soy
0.0
vioscreen_magnes
261.4684289
vioscreen_maltitol
0.0
vioscreen_maltose
0.525753366
vioscreen_mangan
2.460548046
vioscreen_mannitol
0.47383560799999996
vioscreen_methhis3
4.280575102
vioscreen_methion
1.587589128
vioscreen_mfa141
0.044547946
vioscreen_mfa161
1.526575209
vioscreen_mfa181
33.67043557
vioscreen_mfa201
0.31432877600000003
vioscreen_mfa221
0.148958901
vioscreen_mfatot
35.91356218
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
9.109698068
vioscreen_nccglbr
53.24536601
vioscreen_nccglgr
37.24112532
vioscreen_niacin
12.64676932
vioscreen_niacineq
25.25337115
vioscreen_nitrogen
10.60523331
vioscreen_non_fried_fish_servings
1.07212
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.577671333
vioscreen_oxalic
202.1031036
vioscreen_oxalicm
210.2985231
vioscreen_pantothe
7.29589108
vioscreen_pectins
4.573726121
vioscreen_pfa182
8.496738549
vioscreen_pfa183
1.2194519879999999
vioscreen_pfa184
0.027342464
vioscreen_pfa204
0.256465755
vioscreen_pfa205
0.087041097
vioscreen_pfa225
0.036438354
vioscreen_pfa226
0.20756165
vioscreen_pfatot
10.47402745
vioscreen_phenylal
3.097835175
vioscreen_phosphor
1273.475342
vioscreen_phytic
294.2173587
vioscreen_pinitol
0.0
vioscreen_potass
2691.600514
vioscreen_procdate
10/28/15
vioscreen_proline
4.016054754
vioscreen_protanim
48.93750535
vioscreen_protein
66.19134204
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.25386478
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
500.0
vioscreen_retinol
2137.132192
vioscreen_rgrain
0.0
vioscreen_ribofla
2.7879451389999996
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.10137
vioscreen_satoco
0.0
vioscreen_selenium
88.12386023
vioscreen_serine
3.5291229669999997
vioscreen_sfa100
2.6468495830000003
vioscreen_sfa120
2.763890431
vioscreen_sfa140
8.732904805
vioscreen_sfa160
29.43306667
vioscreen_sfa170
0.47794519700000004
vioscreen_sfa180
13.2069871
vioscreen_sfa200
0.201068512
vioscreen_sfa220
0.18191781199999998
vioscreen_sfa40
3.263315028
vioscreen_sfa60
2.142849355
vioscreen_sfa80
1.4348766590000002
vioscreen_sfatot
64.86873395
vioscreen_sodium
4165.520205
vioscreen_sorbitol
0.680000033
vioscreen_srvid
18438.0
vioscreen_starch
9.230274106
vioscreen_started
4/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.57079543
vioscreen_sweet_servings
0.13085
vioscreen_tagatose
0.613452065
vioscreen_tfa161t
0.078082197
vioscreen_tfa181t
3.498712075
vioscreen_tfa182t
0.533972586
vioscreen_tgrain
0.0
vioscreen_thiamin
0.9977261479999999
vioscreen_threonin
2.787863034
vioscreen_time
13.0
vioscreen_totaltfa
4.275177922
vioscreen_totcla
0.553479464
vioscreen_totfolat
439.0589897
vioscreen_totsugar
71.50187286
vioscreen_tryptoph
0.757013692
vioscreen_tyrosine
2.594246642
vioscreen_user_id
18438.0
vioscreen_v_drkgr
1.3223288340000001
vioscreen_v_orange
0.476410957
vioscreen_v_other
0.768767056
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.7587123090000001
vioscreen_v_tomato
0.0
vioscreen_v_total
3.326219365
vioscreen_valine
3.7092870419999997
vioscreen_veg5_day
6.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.7
vioscreen_visit
1.0
vioscreen_vita_iu
33776.756160000004
vioscreen_vita_rae
3469.736301
vioscreen_vita_re
4802.334589
vioscreen_vitb12
11.91646645
vioscreen_vitb6
1.4001370359999998
vioscreen_vitc
124.38296229999999
vioscreen_vitd
13.25884926
vioscreen_vitd2
0.0
vioscreen_vitd3
13.25884926
vioscreen_vitd_iu
530.3539705000001
vioscreen_vite_iu
13.55038394
vioscreen_vitk
766.1642122999999
vioscreen_water
3848.8174659999995
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.037726029
vioscreen_zinc
8.192821597
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never