American Gut Project; 10317.000028809
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633642
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:01Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028809
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28809
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
21.03
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-31
collection month
May
collection season
Spring
collection time
08:00
collection_timestamp
2015-05-31 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
142.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
500674f9960e56375d4a9c6f1b6ba864dca7cadbafeb0073ebd65c7f6511bd4acc76bf36bccdde6490aab26442c00953e82b03fe8c7757097e82189c9faa6942
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
40.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-76.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028809
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
4c7497b38f0bf634
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.065917807
vioscreen_a_cal
6.410684664
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
17.57410905
vioscreen_addsugar
86.13430544
vioscreen_adsugtot
75.98068814
vioscreen_age
215.0
vioscreen_alanine
3.8638635089999998
vioscreen_alcohol
0.975945209
vioscreen_alcohol_servings
0.06592
vioscreen_alphacar
317.66252139999995
vioscreen_alphtoce
15.333287400000001
vioscreen_alphtoco
11.42537056
vioscreen_arginine
4.578028013
vioscreen_ash
21.99046848
vioscreen_aspartam
15.97526086
vioscreen_aspartic
7.387205692999999
vioscreen_avcarb
244.5460188
vioscreen_bcodeid
Not provided
vioscreen_betacar
7241.69863
vioscreen_betacryp
80.48352419
vioscreen_betaine
292.34261560000004
vioscreen_betatoco
0.512849405
vioscreen_biochana
0.008876712
vioscreen_bmi
Not provided
vioscreen_caffeine
185.03724319999998
vioscreen_calcium
true
vioscreen_calcium_avg
71.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
2.0937
vioscreen_calcium_servings
4.92126
vioscreen_calories
2264.136815
vioscreen_carbo
273.0600171
vioscreen_cholest
315.37553510000004
vioscreen_choline
378.70282530000003
vioscreen_clac9t11
0.171506835
vioscreen_clat10c12
0.031506852
vioscreen_copper
1.559972476
vioscreen_coumest
0.17920546899999998
vioscreen_cystine
1.108739649
vioscreen_d_cheese
1.146219165
vioscreen_d_milk
0.194931511
vioscreen_d_tot_soym
2.401808313
vioscreen_d_total
2.093698496
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
3.186548855
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.812410705
vioscreen_discfat_oil
14.45925995
vioscreen_discfat_sol
64.88109482
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000986301
vioscreen_f_citmlb
0.48246568700000003
vioscreen_f_nj_citmlb
0.26504106899999996
vioscreen_f_nj_other
0.564438368
vioscreen_f_nj_total
0.8295343270000001
vioscreen_f_other
0.564438368
vioscreen_f_total
1.046958777
vioscreen_fat
94.57945206
vioscreen_fiber
28.42770227
vioscreen_fibh2o
8.01079436
vioscreen_fibinso
20.49715192
vioscreen_finished
5/30/15
vioscreen_fish_servings
1.11846
vioscreen_fol_deqv
494.69379280000004
vioscreen_fol_nat
298.8380565
vioscreen_fol_syn
115.1643301
vioscreen_formontn
0.003260274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
1.3
vioscreen_frtsumm
2.1
vioscreen_fructose
16.32641133
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.519753652
vioscreen_g_total
8.621725171
vioscreen_g_whl
5.101972857
vioscreen_galactos
1.167232817
vioscreen_gammtoco
14.73000054
vioscreen_gender
false
vioscreen_genistn
3.816274481
vioscreen_glac
124.50869009999998
vioscreen_gltc
137.94089259999998
vioscreen_glucose
16.35254843
vioscreen_glutamic
17.46728649
vioscreen_glycine
3.32561704
vioscreen_glycitn
0.554712332
vioscreen_grams
2489.8888699999998
vioscreen_hei2010_dairy
8.2
vioscreen_hei2010_empty_calories
7.2
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
2.9
vioscreen_hei2010_greens_beans
3.3
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
64.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.5
vioscreen_hei2010_veg
3.5
vioscreen_hei2010_whole_fruit
4.6
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
2.9
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
8.2
vioscreen_hei_non_juice_frt
4.6
vioscreen_hei_oils
5.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
58.1
vioscreen_hei_sodium
4.4
vioscreen_hei_sol_fat_alc_add_sug
7.3
vioscreen_hei_veg
3.5
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.308410477
vioscreen_inositol
0.143479449
vioscreen_iron
15.74098887
vioscreen_isoleuc
3.938164865
vioscreen_isomalt
0.0
vioscreen_joules
9473.146575
vioscreen_juice_servings
0.43488000000000004
vioscreen_lactitol
0.0
vioscreen_lactose
15.97287698
vioscreen_legumes
0.040986299
vioscreen_leucine
6.827561135
vioscreen_line_gi
631.4730308
vioscreen_low_fat_dairy_serving
0.88956
vioscreen_lutzeax
4743.842466
vioscreen_lycopene
3390.278425
vioscreen_lysine
5.766630993
vioscreen_m_egg
0.579917803
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.014356164
vioscreen_m_meat
1.41830135
vioscreen_m_mpf
2.998876953
vioscreen_m_nutsd
1.183150618
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9289040759999999
vioscreen_m_soy
0.324383545
vioscreen_magnes
397.3715325
vioscreen_maltitol
0.0
vioscreen_maltose
7.019890437999999
vioscreen_mangan
6.268685119
vioscreen_mannitol
0.240767116
vioscreen_methhis3
12.75317851
vioscreen_methion
1.952438396
vioscreen_mfa141
0.12013699300000001
vioscreen_mfa161
1.181945132
vioscreen_mfa181
26.831753000000003
vioscreen_mfa201
0.331698608
vioscreen_mfa221
0.070301375
vioscreen_mfatot
28.84186644
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
9.631615208
vioscreen_nccglbr
197.4946918
vioscreen_nccglgr
138.16026330000003
vioscreen_niacin
24.91805169
vioscreen_niacineq
40.5547972
vioscreen_nitrogen
14.99725894
vioscreen_non_fried_fish_servings
1.11846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.0568220580000003
vioscreen_oxalic
308.8610231
vioscreen_oxalicm
296.3450771
vioscreen_pantothe
7.566576145
vioscreen_pectins
2.923425126
vioscreen_pfa182
15.72043825
vioscreen_pfa183
1.816876639
vioscreen_pfa184
0.017013699
vioscreen_pfa204
0.131068494
vioscreen_pfa205
0.05865752900000001
vioscreen_pfa225
0.035452056
vioscreen_pfa226
0.12953425400000002
vioscreen_pfatot
18.05405608
vioscreen_phenylal
3.94736997
vioscreen_phosphor
1670.842466
vioscreen_phytic
1064.72226
vioscreen_pinitol
0.029123287999999997
vioscreen_potass
2975.99726
vioscreen_procdate
10/28/15
vioscreen_proline
6.387205025
vioscreen_protanim
54.08558968
vioscreen_protein
91.72144692
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
37.62281946
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
420.0
vioscreen_retinol
495.0273116
vioscreen_rgrain
3.896082045
vioscreen_ribofla
2.45263003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8982700000000001
vioscreen_satoco
3.986081978
vioscreen_selenium
156.6358091
vioscreen_serine
4.244082098
vioscreen_sfa100
1.253205516
vioscreen_sfa120
2.527287731
vioscreen_sfa140
4.6744936589999995
vioscreen_sfa160
18.48597362
vioscreen_sfa170
0.215945163
vioscreen_sfa180
8.596739218
vioscreen_sfa200
0.203424616
vioscreen_sfa220
0.23539727600000002
vioscreen_sfa40
1.348547949
vioscreen_sfa60
0.7655341999999999
vioscreen_sfa80
0.674931524
vioscreen_sfatot
39.53454891
vioscreen_sodium
3401.021233
vioscreen_sorbitol
0.45221921299999995
vioscreen_srvid
18785.0
vioscreen_starch
97.63702911
vioscreen_started
5/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
68.82907213
vioscreen_sweet_servings
1.40149
vioscreen_tagatose
7.42463011
vioscreen_tfa161t
0.067589041
vioscreen_tfa181t
2.401451968
vioscreen_tfa182t
0.579616473
vioscreen_tgrain
8.814109321
vioscreen_thiamin
1.7800271230000002
vioscreen_threonin
3.2647400739999997
vioscreen_time
35.0
vioscreen_totaltfa
3.1893146669999997
vioscreen_totcla
0.20460272
vioscreen_totfolat
413.995976
vioscreen_totsugar
126.27128640000001
vioscreen_tryptoph
0.939479462
vioscreen_tyrosine
3.152082219
vioscreen_user_id
18785.0
vioscreen_v_drkgr
0.300328775
vioscreen_v_orange
0.27915070399999997
vioscreen_v_other
0.36238357299999996
vioscreen_v_potato
0.102821925
vioscreen_v_starcy
0.31723290000000004
vioscreen_v_tomato
0.396356118
vioscreen_v_total
1.758356298
vioscreen_valine
4.692192182
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.5
vioscreen_visit
1.0
vioscreen_vita_iu
14049.732880000001
vioscreen_vita_rae
1115.092637
vioscreen_vita_re
1735.1571920000001
vioscreen_vitb12
5.237890291
vioscreen_vitb6
1.8740819640000002
vioscreen_vitc
88.11201841
vioscreen_vitd
6.515698577
vioscreen_vitd2
0.8438903809999999
vioscreen_vitd3
5.671836205
vioscreen_vitd_iu
260.6279431
vioscreen_vite_iu
18.33810734
vioscreen_vitk
217.39578340000003
vioscreen_water
2037.7566780000002
vioscreen_weight
Not provided
vioscreen_wgrain
4.917973098
vioscreen_whole_grain_servings
5.10197
vioscreen_xylitol
0.012356164
vioscreen_zinc
13.9938918
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)