American Gut Project; 10317.000030204
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634144
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030204
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030204
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
17.01
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-31
collection month
August
collection season
Summer
collection time
08:45
collection_timestamp
2015-08-31 08:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
13.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Not provided
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
168.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fc64aa95d4ca1d0ddfd87a920ddb20edfa522084f9814039b87b0049164548a5e22b10338f443bdea955deb0962857c001e922113e1320dae8c398aeb448bdd5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
52.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
1.5
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030204
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
64d179a726cb1f30
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.226958894
vioscreen_a_cal
28.33314962
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.4485472
vioscreen_addsugar
53.5877515
vioscreen_adsugtot
51.815121999999995
vioscreen_age
215.0
vioscreen_alanine
4.429533992
vioscreen_alcohol
3.548931467
vioscreen_alcohol_servings
0.22696
vioscreen_alphacar
2422.495548
vioscreen_alphtoce
16.16811189
vioscreen_alphtoco
15.14317878
vioscreen_arginine
5.221917808
vioscreen_ash
23.93934075
vioscreen_aspartam
0.0
vioscreen_aspartic
9.039616331
vioscreen_avcarb
160.3719178
vioscreen_bcodeid
Not provided
vioscreen_betacar
16232.578080000001
vioscreen_betacryp
388.4502997
vioscreen_betaine
59.88873609
vioscreen_betatoco
0.392958884
vioscreen_biochana
0.01969863
vioscreen_bmi
Not provided
vioscreen_caffeine
273.2977312
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.46603
vioscreen_calcium_servings
4.76551
vioscreen_calories
1771.4827050000001
vioscreen_carbo
188.15740580000002
vioscreen_cholest
520.4497432000001
vioscreen_choline
634.5975599
vioscreen_clac9t11
0.09484932300000001
vioscreen_clat10c12
0.02032877
vioscreen_copper
1.628274327
vioscreen_coumest
0.07156164599999999
vioscreen_cystine
1.158684968
vioscreen_d_cheese
0.14884932
vioscreen_d_milk
0.317945214
vioscreen_d_tot_soym
2.4660274980000003
vioscreen_d_total
2.4660274980000003
vioscreen_d_yogurt
1.99920554
vioscreen_daidzein
1.4100821719999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.907370037
vioscreen_discfat_oil
23.08712275
vioscreen_discfat_sol
30.62873769
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.461260234
vioscreen_f_nj_citmlb
0.45227397799999997
vioscreen_f_nj_other
0.5955616570000001
vioscreen_f_nj_total
1.047835593
vioscreen_f_other
0.5955616570000001
vioscreen_f_total
1.056849315
vioscreen_fat
77.7689908
vioscreen_fiber
27.78547999
vioscreen_fibh2o
6.333177707999999
vioscreen_fibinso
21.526573199999998
vioscreen_finished
8/27/15
vioscreen_fish_servings
3.7903800000000003
vioscreen_fol_deqv
545.6547089
vioscreen_fol_nat
530.4721317999999
vioscreen_fol_syn
8.9223285
vioscreen_formontn
0.002876712
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
2.1
vioscreen_fructose
14.68266
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.43153427299999997
vioscreen_g_total
0.43153427299999997
vioscreen_g_whl
0.0
vioscreen_galactos
2.612356191
vioscreen_gammtoco
8.494576733999999
vioscreen_gender
false
vioscreen_genistn
2.154904217
vioscreen_glac
45.32822132
vioscreen_gltc
49.87359268
vioscreen_glucose
16.07402611
vioscreen_glutamic
16.1426303
vioscreen_glycine
3.4849589310000004
vioscreen_glycitn
0.226410957
vioscreen_grams
3948.3037670000003
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
14.6
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
3.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.7
vioscreen_hei_grains
0.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.3
vioscreen_hei_score
68.3
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
14.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.3059722480000002
vioscreen_inositol
0.133835633
vioscreen_iron
10.86331403
vioscreen_isoleuc
4.328246067
vioscreen_isomalt
0.0
vioscreen_joules
7411.882877
vioscreen_juice_servings
0.018000000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
33.45967198
vioscreen_legumes
0.21495890199999998
vioscreen_leucine
7.476931052
vioscreen_line_gi
231.58634419999998
vioscreen_low_fat_dairy_serving
2.0112900000000002
vioscreen_lutzeax
16912.79178
vioscreen_lycopene
4861.616438
vioscreen_lysine
6.789041096
vioscreen_m_egg
2.013369876
vioscreen_m_fish_hi
0.904465767
vioscreen_m_fish_lo
1.255534216
vioscreen_m_frank
0.0
vioscreen_m_meat
0.545890369
vioscreen_m_mpf
3.014903949
vioscreen_m_nutsd
2.212712369
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.24136988
vioscreen_m_soy
0.091342456
vioscreen_magnes
417.90291099999996
vioscreen_maltitol
0.0
vioscreen_maltose
0.774958864
vioscreen_mangan
5.112164223
vioscreen_mannitol
0.465671236
vioscreen_methhis3
9.623590004
vioscreen_methion
2.212328767
vioscreen_mfa141
0.060027402
vioscreen_mfa161
1.349232964
vioscreen_mfa181
31.31610927
vioscreen_mfa201
0.398493142
vioscreen_mfa221
0.14339725
vioscreen_mfatot
33.50479987
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.14317878
vioscreen_nccglbr
89.38142123
vioscreen_nccglgr
62.51235552
vioscreen_niacin
15.83561644
vioscreen_niacineq
31.06702162
vioscreen_nitrogen
14.48813544
vioscreen_non_fried_fish_servings
3.7903800000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.4593149680000002
vioscreen_oxalic
481.82615580000004
vioscreen_oxalicm
513.5715753000001
vioscreen_pantothe
8.203916952
vioscreen_pectins
6.252767819
vioscreen_pfa182
11.20624532
vioscreen_pfa183
0.97216429
vioscreen_pfa184
0.030849316
vioscreen_pfa204
0.209534256
vioscreen_pfa205
0.129808222
vioscreen_pfa225
0.042356167
vioscreen_pfa226
0.284465779
vioscreen_pfatot
12.96764234
vioscreen_phenylal
4.340356111
vioscreen_phosphor
1687.5727739999998
vioscreen_phytic
569.8474315000001
vioscreen_pinitol
0.010657534
vioscreen_potass
4583.065068
vioscreen_procdate
10/28/15
vioscreen_proline
6.0601368529999995
vioscreen_protanim
62.15197453
vioscreen_protein
89.70295912
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.51509257
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
171.0
vioscreen_retinol
494.475214
vioscreen_rgrain
0.333397267
vioscreen_ribofla
2.750547811
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.8692900000000003
vioscreen_satoco
0.0
vioscreen_selenium
124.8362907
vioscreen_serine
4.950986596
vioscreen_sfa100
0.495945175
vioscreen_sfa120
0.575917827
vioscreen_sfa140
2.015616472
vioscreen_sfa160
13.69643889
vioscreen_sfa170
0.10317808199999999
vioscreen_sfa180
5.125753492
vioscreen_sfa200
0.221232898
vioscreen_sfa220
0.36504111100000003
vioscreen_sfa40
0.613397259
vioscreen_sfa60
0.364356138
vioscreen_sfa80
0.248657519
vioscreen_sfatot
24.2403842
vioscreen_sodium
3369.154452
vioscreen_sorbitol
0.484493141
vioscreen_srvid
20510.0
vioscreen_starch
19.131452
vioscreen_started
8/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
55.74797196
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
14.96304045
vioscreen_tfa161t
0.042767125
vioscreen_tfa181t
1.181561697
vioscreen_tfa182t
0.21504109
vioscreen_tgrain
0.333397267
vioscreen_thiamin
1.111863061
vioscreen_threonin
3.735643862
vioscreen_time
25.0
vioscreen_totaltfa
1.464712315
vioscreen_totcla
0.115835613
vioscreen_totfolat
539.3944777
vioscreen_totsugar
124.88189209999999
vioscreen_tryptoph
0.91597265
vioscreen_tyrosine
3.5462462539999997
vioscreen_user_id
20510.0
vioscreen_v_drkgr
1.32816438
vioscreen_v_orange
0.483725979
vioscreen_v_other
2.441424811
vioscreen_v_potato
0.055315065
vioscreen_v_starcy
0.063561646
vioscreen_v_tomato
0.707863
vioscreen_v_total
5.08005438
vioscreen_valine
5.40701319
vioscreen_veg5_day
11.5
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
10.1
vioscreen_visit
1.0
vioscreen_vita_iu
31041.5726
vioscreen_vita_rae
1964.314726
vioscreen_vita_re
3434.152397
vioscreen_vitb12
6.981616545
vioscreen_vitb6
2.33569871
vioscreen_vitc
305.1629067
vioscreen_vitd
8.350520387000001
vioscreen_vitd2
0.0
vioscreen_vitd3
8.350520387000001
vioscreen_vitd_iu
334.02081549999997
vioscreen_vite_iu
22.58287404
vioscreen_vitk
771.8079623
vioscreen_water
3585.927397
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.047205483
vioscreen_zinc
12.36068466
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
48.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)