American Gut Project; 10317.000002769
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632309
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:40:22Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000002769
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000002769
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
19.58
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2014-12-15
collection month
December
collection season
Winter
collection time
09:00
collection_timestamp
2014-12-15 09:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by an alternative medicine practitioner
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
14.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2f5d4f788acccfa255007d6e085db8b042633e0ee7656e7a330fd44bbb356b8b1b7b9dfb19ae40f978d942c0d6ee54d0d0549b6c358160bfc04580e2058b922c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
37.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000002769
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d03269082087bf43
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.117945214
vioscreen_a_cal
12.94909568
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.610794527
vioscreen_addsugar
3.623177975
vioscreen_adsugtot
3.3069590110000004
vioscreen_age
214.0
vioscreen_alanine
3.673479305
vioscreen_alcohol
1.736082145
vioscreen_alcohol_servings
0.11795
vioscreen_alphacar
2527.637842
vioscreen_alphtoce
12.95638244
vioscreen_alphtoco
12.06635542
vioscreen_arginine
4.521287725
vioscreen_ash
17.93846452
vioscreen_aspartam
0.0
vioscreen_aspartic
6.782712168
vioscreen_avcarb
40.45912885
vioscreen_bcodeid
Not provided
vioscreen_betacar
10589.1774
vioscreen_betacryp
87.96784033
vioscreen_betaine
53.34742616
vioscreen_betatoco
0.24342465300000002
vioscreen_biochana
0.002136986
vioscreen_bmi
Not provided
vioscreen_caffeine
92.77369435
vioscreen_calcium
true
vioscreen_calcium_avg
214.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
0.28559
vioscreen_calcium_servings
1.6129
vioscreen_calories
1428.71036
vioscreen_carbo
56.33783712
vioscreen_cholest
907.4269692
vioscreen_choline
760.6208048
vioscreen_clac9t11
0.172958917
vioscreen_clat10c12
0.035890417
vioscreen_copper
0.9715890540000001
vioscreen_coumest
0.043041092999999996
vioscreen_cystine
1.118246585
vioscreen_d_cheese
0.159589041
vioscreen_d_milk
0.126000005
vioscreen_d_tot_soym
0.285589056
vioscreen_d_total
0.285589056
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.178958924
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.46646578
vioscreen_discfat_oil
20.11339764
vioscreen_discfat_sol
55.03265732
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000136986
vioscreen_f_citmlb
0.204739735
vioscreen_f_nj_citmlb
0.19706849399999998
vioscreen_f_nj_other
0.619424648
vioscreen_f_nj_total
0.816493204
vioscreen_f_other
0.619424648
vioscreen_f_total
0.824164404
vioscreen_fat
105.4015304
vioscreen_fiber
15.87904136
vioscreen_fibh2o
4.520191767
vioscreen_fibinso
11.40720516
vioscreen_finished
12/15/14
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
322.31663100000003
vioscreen_fol_nat
313.15047089999996
vioscreen_fol_syn
5.388986247999999
vioscreen_formontn
0.002109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.6
vioscreen_fructose
5.906575075
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.36284928
vioscreen_g_total
0.36284928
vioscreen_g_whl
0.0
vioscreen_galactos
0.095342485
vioscreen_gammtoco
7.778986515
vioscreen_gender
false
vioscreen_genistn
0.12008219699999999
vioscreen_glac
7.749752515
vioscreen_gltc
9.803424657999999
vioscreen_glucose
8.079315604
vioscreen_glutamic
10.77802734
vioscreen_glycine
3.096274013
vioscreen_glycitn
0.026273973
vioscreen_grams
2888.9434929999998
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
9.4
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
3.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
53.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.6
vioscreen_hei_grains
0.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
49.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.8359998730000002
vioscreen_inositol
0.02169863
vioscreen_iron
8.008985044
vioscreen_isoleuc
3.3566024989999996
vioscreen_isomalt
0.0
vioscreen_joules
5977.726027000001
vioscreen_juice_servings
0.015319999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
1.2908492409999999
vioscreen_legumes
0.0076164380000000005
vioscreen_leucine
5.321999746
vioscreen_line_gi
88.17900792
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
10155.50685
vioscreen_lycopene
3429.075
vioscreen_lysine
4.938109683
vioscreen_m_egg
4.002082219
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.429726044
vioscreen_m_meat
0.663890389
vioscreen_m_mpf
3.198054902
vioscreen_m_nutsd
1.7053424990000001
vioscreen_m_organ
0.0
vioscreen_m_poult
2.104438343
vioscreen_m_soy
0.002054795
vioscreen_magnes
241.847881
vioscreen_maltitol
0.0
vioscreen_maltose
0.255917818
vioscreen_mangan
2.005177955
vioscreen_mannitol
0.338520562
vioscreen_methhis3
12.68265866
vioscreen_methion
1.756547985
vioscreen_mfa141
0.058082189000000006
vioscreen_mfa161
2.163233091
vioscreen_mfa181
40.84794253
vioscreen_mfa201
0.42663014
vioscreen_mfa221
0.010849315
vioscreen_mfatot
43.65065818
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
12.06635542
vioscreen_nccglbr
26.01416685
vioscreen_nccglgr
18.19638271
vioscreen_niacin
13.89178082
vioscreen_niacineq
27.15367081
vioscreen_nitrogen
11.18575356
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.306191808
vioscreen_oxalic
457.32273119999996
vioscreen_oxalicm
491.32208899999995
vioscreen_pantothe
6.174301022000001
vioscreen_pectins
3.898904043
vioscreen_pfa182
14.17405554
vioscreen_pfa183
1.169753318
vioscreen_pfa184
0.00060274
vioscreen_pfa204
0.40739725200000004
vioscreen_pfa205
0.017041095
vioscreen_pfa225
0.017698632
vioscreen_pfa226
0.101671235
vioscreen_pfatot
15.97618927
vioscreen_phenylal
3.1728492210000003
vioscreen_phosphor
935.2122432
vioscreen_phytic
322.0050942
vioscreen_pinitol
0.0014246570000000002
vioscreen_potass
2350.352568
vioscreen_procdate
10/28/15
vioscreen_proline
3.215178189
vioscreen_protanim
54.73252355
vioscreen_protein
68.97258134
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.2406036
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
685.0
vioscreen_retinol
566.0387842
vioscreen_rgrain
0.250602743
vioscreen_ribofla
1.841780655
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.36225
vioscreen_satoco
0.0
vioscreen_selenium
109.1076627
vioscreen_serine
3.7593428939999995
vioscreen_sfa100
0.770684982
vioscreen_sfa120
0.853780835
vioscreen_sfa140
2.802986375
vioscreen_sfa160
20.42473646
vioscreen_sfa170
0.21449315300000002
vioscreen_sfa180
8.037041817999999
vioscreen_sfa200
0.224465775
vioscreen_sfa220
0.30441096100000004
vioscreen_sfa40
0.954136929
vioscreen_sfa60
0.581917791
vioscreen_sfa80
0.35630137799999995
vioscreen_sfatot
35.85328821
vioscreen_sodium
3490.4729450000004
vioscreen_sorbitol
0.18649315
vioscreen_srvid
14975.0
vioscreen_starch
8.848520441
vioscreen_started
12/15/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.878575155
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.013479451000000002
vioscreen_tfa161t
0.058246575999999994
vioscreen_tfa181t
2.103452082
vioscreen_tfa182t
0.238465777
vioscreen_tgrain
0.35049315200000003
vioscreen_thiamin
0.654136971
vioscreen_threonin
2.952137067
vioscreen_time
25.0
vioscreen_totaltfa
2.4324382630000003
vioscreen_totcla
0.209068466
vioscreen_totfolat
318.5394264
vioscreen_totsugar
23.615373499999997
vioscreen_tryptoph
0.796575342
vioscreen_tyrosine
2.526657314
vioscreen_user_id
14975.0
vioscreen_v_drkgr
0.588794489
vioscreen_v_orange
0.526438339
vioscreen_v_other
0.9158356129999999
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.203041098
vioscreen_v_total
2.234356104
vioscreen_valine
3.643177775
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.5
vioscreen_visit
1.0
vioscreen_vita_iu
21715.09589
vioscreen_vita_rae
1557.4558220000001
vioscreen_vita_re
2548.869863
vioscreen_vitb12
3.312000348
vioscreen_vitb6
1.440931514
vioscreen_vitc
73.31636344
vioscreen_vitd
5.776274213
vioscreen_vitd2
0.0
vioscreen_vitd3
5.776274213
vioscreen_vitd_iu
231.0509685
vioscreen_vite_iu
18.00032641
vioscreen_vitk
355.4413955
vioscreen_water
2661.4549660000002
vioscreen_weight
Not provided
vioscreen_wgrain
0.09989040800000001
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.023287671
vioscreen_zinc
7.884054607
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)