American Gut Project; 10317.000029503
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633731
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029503
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29503
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
23.05
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-30
collection month
June
collection season
Summer
collection time
11:00
collection_timestamp
2015-06-30 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
67.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
164.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e4b7c3f180ad0c587a081dbcccb53a4689a2ae231ebf99e7c6b2598c6ec6face29959a1f70eb0da5177d8af763f30799b57bd0615e1cbaf718c53237c257e63c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.9
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-2.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029503
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
c495e11d579635b6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.089945085
vioscreen_a_cal
504.05779110000003
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.326657481
vioscreen_addsugar
43.7325503
vioscreen_adsugtot
39.7127408
vioscreen_age
215.0
vioscreen_alanine
3.683506796
vioscreen_alcohol
63.03410745
vioscreen_alcohol_servings
4.08995
vioscreen_alphacar
2511.7950339999998
vioscreen_alphtoce
9.68684985
vioscreen_alphtoco
9.105645334
vioscreen_arginine
3.747753237
vioscreen_ash
20.14537136
vioscreen_aspartam
0.0
vioscreen_aspartic
7.222137200000001
vioscreen_avcarb
159.17153249999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
11689.521920000001
vioscreen_betacryp
342.5091182
vioscreen_betaine
93.90709546
vioscreen_betatoco
0.144328758
vioscreen_biochana
0.011616438
vioscreen_bmi
Not provided
vioscreen_caffeine
332.7209332
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.4998400000000003
vioscreen_calcium_servings
3.92614
vioscreen_calories
2188.295205
vioscreen_carbo
176.4240154
vioscreen_cholest
303.8447988
vioscreen_choline
407.59995719999995
vioscreen_clac9t11
0.18863009100000003
vioscreen_clat10c12
0.037753432
vioscreen_copper
1.17443856
vioscreen_coumest
0.048164383
vioscreen_cystine
0.9126848609999999
vioscreen_d_cheese
0.23701368399999997
vioscreen_d_milk
1.5075068230000002
vioscreen_d_tot_soym
2.499835623
vioscreen_d_total
2.499835623
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.131972598
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8123836990000001
vioscreen_discfat_oil
30.65868739
vioscreen_discfat_sol
40.630878100000004
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.06997261
vioscreen_f_nj_citmlb
0.067287675
vioscreen_f_nj_other
0.39857533100000003
vioscreen_f_nj_total
0.46586295299999997
vioscreen_f_other
0.39857533100000003
vioscreen_f_total
0.46854787299999995
vioscreen_fat
85.74166845
vioscreen_fiber
17.25320393
vioscreen_fibh2o
4.149096345
vioscreen_fibinso
13.07975439
vioscreen_finished
6/29/15
vioscreen_fish_servings
1.22519
vioscreen_fol_deqv
450.90817639999995
vioscreen_fol_nat
378.55068489999996
vioscreen_fol_syn
42.57172517
vioscreen_formontn
0.002246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
12.54504094
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.428027344
vioscreen_g_total
1.701616512
vioscreen_g_whl
0.27358904300000003
vioscreen_galactos
1.0330959370000001
vioscreen_gammtoco
5.142931627
vioscreen_gender
false
vioscreen_genistn
0.13808220599999999
vioscreen_glac
57.97981057
vioscreen_gltc
62.47172517
vioscreen_glucose
12.08939828
vioscreen_glutamic
14.24706764
vioscreen_glycine
3.017314921
vioscreen_glycitn
0.017397261
vioscreen_grams
4178.744863
vioscreen_hei2010_dairy
8.8
vioscreen_hei2010_empty_calories
7.9
vioscreen_hei2010_fatty_acids
1.4
vioscreen_hei2010_fruit
1.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.1
vioscreen_hei2010_sea_foods_plant_protiens
2.4
vioscreen_hei2010_sodium
7.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.7
vioscreen_hei2010_whole_grains
0.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.3
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
8.9
vioscreen_hei_milk
8.8
vioscreen_hei_non_juice_frt
2.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.3
vioscreen_hei_score
53.8
vioscreen_hei_sodium
6.0
vioscreen_hei_sol_fat_alc_add_sug
2.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.4
vioscreen_height
Not provided
vioscreen_histidin
2.144794454
vioscreen_inositol
0.321287683
vioscreen_iron
11.97474048
vioscreen_isoleuc
3.590329021
vioscreen_isomalt
0.0
vioscreen_joules
9155.826712
vioscreen_juice_servings
0.00542
vioscreen_lactitol
0.0
vioscreen_lactose
30.25969874
vioscreen_legumes
0.015726027
vioscreen_leucine
6.140192905
vioscreen_line_gi
278.65085619999996
vioscreen_low_fat_dairy_serving
0.7497
vioscreen_lutzeax
5604.387329
vioscreen_lycopene
4324.677055
vioscreen_lysine
5.839396938999999
vioscreen_m_egg
0.5077260060000001
vioscreen_m_fish_hi
0.423178059
vioscreen_m_fish_lo
0.274931503
vioscreen_m_frank
0.039589041
vioscreen_m_meat
2.472548059
vioscreen_m_mpf
4.221780688
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.0
vioscreen_m_poult
1.011589071
vioscreen_m_soy
0.002876712
vioscreen_magnes
408.2120291
vioscreen_maltitol
0.0
vioscreen_maltose
2.0263013030000003
vioscreen_mangan
4.867671099
vioscreen_mannitol
0.406301378
vioscreen_methhis3
17.62885006
vioscreen_methion
1.86616445
vioscreen_mfa141
0.079287673
vioscreen_mfa161
1.169780909
vioscreen_mfa181
29.90624197
vioscreen_mfa201
0.317643842
vioscreen_mfa221
0.067369863
vioscreen_mfatot
31.73734482
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.105645334
vioscreen_nccglbr
114.4516588
vioscreen_nccglgr
80.05490154
vioscreen_niacin
19.33263057
vioscreen_niacineq
32.11487853
vioscreen_nitrogen
12.20465807
vioscreen_non_fried_fish_servings
1.22519
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.352219339
vioscreen_oxalic
315.1977526
vioscreen_oxalicm
248.0021404
vioscreen_pantothe
5.622547223
vioscreen_pectins
3.45175313
vioscreen_pfa182
11.35561858
vioscreen_pfa183
2.116191707
vioscreen_pfa184
0.015726027
vioscreen_pfa204
0.116904105
vioscreen_pfa205
0.057479460999999996
vioscreen_pfa225
0.033178081
vioscreen_pfa226
0.130547949
vioscreen_pfatot
13.88569804
vioscreen_phenylal
3.394027585
vioscreen_phosphor
1410.069349
vioscreen_phytic
304.723994
vioscreen_pinitol
0.002575342
vioscreen_potass
4310.753767
vioscreen_procdate
10/28/15
vioscreen_proline
4.981972389
vioscreen_protanim
60.84180758
vioscreen_protein
76.36268194
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.509314800000002
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
348.0
vioscreen_retinol
418.1719178
vioscreen_rgrain
1.4599726430000002
vioscreen_ribofla
2.27353432
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.44129
vioscreen_satoco
0.0
vioscreen_selenium
92.36443707
vioscreen_serine
3.641917942
vioscreen_sfa100
0.994054841
vioscreen_sfa120
1.366410932
vioscreen_sfa140
3.666986168
vioscreen_sfa160
16.49663287
vioscreen_sfa170
0.16443834699999998
vioscreen_sfa180
7.266960081000001
vioscreen_sfa200
0.16523287
vioscreen_sfa220
0.077808229
vioscreen_sfa40
1.118219245
vioscreen_sfa60
0.758438319
vioscreen_sfa80
0.6224657029999999
vioscreen_sfatot
32.92506421
vioscreen_sodium
2911.128425
vioscreen_sorbitol
0.300602743
vioscreen_srvid
20006.0
vioscreen_starch
35.93577965
vioscreen_started
6/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
39.63706657
vioscreen_sweet_servings
0.48641999999999996
vioscreen_tagatose
7.313999625
vioscreen_tfa161t
0.035808217999999996
vioscreen_tfa181t
1.543314895
vioscreen_tfa182t
0.46252056799999997
vioscreen_tgrain
1.7085479319999999
vioscreen_thiamin
1.203095737
vioscreen_threonin
3.154438008
vioscreen_time
24.0
vioscreen_totaltfa
2.149589141
vioscreen_totcla
0.22682192
vioscreen_totfolat
421.1223887
vioscreen_totsugar
97.94536601
vioscreen_tryptoph
0.766082178
vioscreen_tyrosine
2.8012875910000004
vioscreen_user_id
20006.0
vioscreen_v_drkgr
0.919013705
vioscreen_v_orange
0.456739703
vioscreen_v_other
2.815232368
vioscreen_v_potato
0.49589041100000003
vioscreen_v_starcy
0.002986301
vioscreen_v_tomato
0.621068458
vioscreen_v_total
5.310904391
vioscreen_valine
4.2487405019999995
vioscreen_veg5_day
10.1
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
10.6
vioscreen_visit
1.0
vioscreen_vita_iu
23256.26575
vioscreen_vita_rae
1511.230993
vioscreen_vita_re
2604.284418
vioscreen_vitb12
5.119342626
vioscreen_vitb6
2.014849101
vioscreen_vitc
156.14424230000003
vioscreen_vitd
7.895040935
vioscreen_vitd2
0.000191781
vioscreen_vitd3
7.894876391
vioscreen_vitd_iu
315.8016374
vioscreen_vite_iu
13.57142016
vioscreen_vitk
252.92906680000002
vioscreen_water
3761.540068
vioscreen_weight
Not provided
vioscreen_wgrain
0.248575352
vioscreen_whole_grain_servings
0.27359
vioscreen_xylitol
0.079068495
vioscreen_zinc
11.27106833
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
62.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)