American Gut Project; 10317.000026465
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632741
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026465
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
58.0
age_corrected
58.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26465
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1957.0
bmi
22.14
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
04/06/2015
collection month
April
collection season
Spring
collection time
10:00
collection_timestamp
2015-04-06 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Southwest
elevation
160.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
33411721b500adc71c277ff614e445dc7b284b7936cd2ae6cb05f647794985dbd631fe5e0708206d911d095626b3709587995faf5feac6d6cef576105cb0edd6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
32.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-96.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026465
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
f524c46656057b35
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.11953425
vioscreen_a_cal
12.78389073
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.631781089
vioscreen_addsugar
21.86038099
vioscreen_adsugtot
16.48334493
vioscreen_age
215.0
vioscreen_alanine
4.373999692
vioscreen_alcohol
1.720794427
vioscreen_alcohol_servings
0.11953
vioscreen_alphacar
1448.4422949999998
vioscreen_alphtoce
20.76454409
vioscreen_alphtoco
18.6269344
vioscreen_arginine
5.247945205
vioscreen_ash
23.22058005
vioscreen_aspartam
0.0
vioscreen_aspartic
8.116493873
vioscreen_avcarb
192.9307791
vioscreen_bcodeid
Not provided
vioscreen_betacar
19103.43288
vioscreen_betacryp
488.7162671
vioscreen_betaine
102.8693921
vioscreen_betatoco
0.29016437300000003
vioscreen_biochana
0.036520548
vioscreen_bmi
Not provided
vioscreen_caffeine
30.97427494
vioscreen_calcium
true
vioscreen_calcium_avg
1200.0
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.20274
vioscreen_calcium_servings
2.58241
vioscreen_calories
1986.474315
vioscreen_carbo
226.5160103
vioscreen_cholest
287.91817210000005
vioscreen_choline
427.3497432
vioscreen_clac9t11
0.03460274
vioscreen_clat10c12
0.00819178
vioscreen_copper
1.8349589309999998
vioscreen_coumest
0.673589001
vioscreen_cystine
1.046492987
vioscreen_d_cheese
0.132301372
vioscreen_d_milk
0.065041095
vioscreen_d_tot_soym
0.202739747
vioscreen_d_total
0.202739747
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.398603382
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.644109689
vioscreen_discfat_oil
54.23868793
vioscreen_discfat_sol
15.24876525
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.005835616
vioscreen_f_citmlb
1.493589135
vioscreen_f_nj_citmlb
1.437013725
vioscreen_f_nj_other
1.030739646
vioscreen_f_nj_total
2.4677806280000003
vioscreen_f_other
1.030739646
vioscreen_f_total
2.524356037
vioscreen_fat
89.25263271
vioscreen_fiber
33.50630084
vioscreen_fibh2o
7.875973887000001
vioscreen_fibinso
25.64569242
vioscreen_finished
4/6/15
vioscreen_fish_servings
1.6269200000000001
vioscreen_fol_deqv
554.2443493
vioscreen_fol_nat
442.97821060000007
vioscreen_fol_syn
65.46216289
vioscreen_formontn
0.00509589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.1
vioscreen_frtsumm
5.0
vioscreen_fructose
26.18468804
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.7953701910000004
vioscreen_g_total
4.3999444830000005
vioscreen_g_whl
1.6045754630000002
vioscreen_galactos
0.27501371199999997
vioscreen_gammtoco
8.63912203
vioscreen_gender
false
vioscreen_genistn
7.036082647000001
vioscreen_glac
87.35012843
vioscreen_gltc
97.33009418
vioscreen_glucose
26.91743097
vioscreen_glutamic
14.04654859
vioscreen_glycine
3.727616318
vioscreen_glycitn
0.964356138
vioscreen_grams
4271.757877
vioscreen_hei2010_dairy
0.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.6
vioscreen_hei2010_sea_foods_plant_protiens
4.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
76.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.7
vioscreen_height
Not provided
vioscreen_histidin
2.185780815
vioscreen_inositol
0.142410958
vioscreen_iron
14.75685199
vioscreen_isoleuc
3.726410665
vioscreen_isomalt
0.0
vioscreen_joules
8311.40137
vioscreen_juice_servings
0.11320999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
0.506821933
vioscreen_legumes
0.090986299
vioscreen_leucine
5.964028387000001
vioscreen_line_gi
461.3159675
vioscreen_low_fat_dairy_serving
0.00951
vioscreen_lutzeax
22009.85068
vioscreen_lycopene
10652.1863
vioscreen_lysine
5.733368337999999
vioscreen_m_egg
0.72032872
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.5191506579999999
vioscreen_m_frank
0.021315069
vioscreen_m_meat
0.6864657470000001
vioscreen_m_mpf
5.2523287000000005
vioscreen_m_nutsd
0.041890411
vioscreen_m_organ
0.0
vioscreen_m_poult
3.6174246169999997
vioscreen_m_soy
0.430684923
vioscreen_magnes
441.0470034
vioscreen_maltitol
0.0
vioscreen_maltose
1.72843837
vioscreen_mangan
5.039452122
vioscreen_mannitol
0.566712262
vioscreen_methhis3
21.20953286
vioscreen_methion
1.866356586
vioscreen_mfa141
0.02471233
vioscreen_mfa161
1.4113697630000002
vioscreen_mfa181
43.39938731
vioscreen_mfa201
0.418904135
vioscreen_mfa221
0.090438362
vioscreen_mfatot
45.51197025
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
17.69298882
vioscreen_nccglbr
154.7587008
vioscreen_nccglgr
108.24715330000001
vioscreen_niacin
23.92279003
vioscreen_niacineq
39.62972763
vioscreen_nitrogen
13.17274187
vioscreen_non_fried_fish_servings
1.6269200000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.815123341
vioscreen_oxalic
749.8790240000001
vioscreen_oxalicm
738.4799658
vioscreen_pantothe
6.119095141
vioscreen_pectins
6.7639722010000005
vioscreen_pfa182
17.12821864
vioscreen_pfa183
2.510410925
vioscreen_pfa184
0.015534245
vioscreen_pfa204
0.23057535199999998
vioscreen_pfa205
0.072082196
vioscreen_pfa225
0.047479452000000005
vioscreen_pfa226
0.170493139
vioscreen_pfatot
20.26394478
vioscreen_phenylal
3.429781143
vioscreen_phosphor
1153.5726029999998
vioscreen_phytic
1006.43613
vioscreen_pinitol
0.019260273
vioscreen_potass
3966.336644
vioscreen_procdate
10/28/15
vioscreen_proline
3.78380846
vioscreen_protanim
49.76724101
vioscreen_protein
81.67100813
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.90486944
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
498.0
vioscreen_retinol
139.41329199999998
vioscreen_rgrain
2.171178363
vioscreen_ribofla
1.40772588
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.51707
vioscreen_satoco
2.075452162
vioscreen_selenium
116.2548801
vioscreen_serine
3.5316713930000003
vioscreen_sfa100
0.063342468
vioscreen_sfa120
0.267835622
vioscreen_sfa140
0.558958916
vioscreen_sfa160
11.89693252
vioscreen_sfa170
0.05161643900000001
vioscreen_sfa180
3.697425487
vioscreen_sfa200
0.242712277
vioscreen_sfa220
0.115342451
vioscreen_sfa40
0.06706849200000001
vioscreen_sfa60
0.024657534
vioscreen_sfa80
0.035506849
vioscreen_sfatot
17.21794868
vioscreen_sodium
4463.939384
vioscreen_sorbitol
0.8070137759999999
vioscreen_srvid
18440.0
vioscreen_starch
90.35907534
vioscreen_started
4/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.47027504
vioscreen_sweet_servings
0.15705
vioscreen_tagatose
0.152712323
vioscreen_tfa161t
0.022630137999999998
vioscreen_tfa181t
0.5956712279999999
vioscreen_tfa182t
0.200136995
vioscreen_tgrain
4.567972429
vioscreen_thiamin
1.269233014
vioscreen_threonin
3.26854733
vioscreen_time
37.0
vioscreen_totaltfa
0.8224382790000001
vioscreen_totcla
0.043589043
vioscreen_totfolat
508.44006849999994
vioscreen_totsugar
80.41010274
vioscreen_tryptoph
0.9440545909999999
vioscreen_tyrosine
2.740219325
vioscreen_user_id
18440.0
vioscreen_v_drkgr
1.478301417
vioscreen_v_orange
0.28512326600000004
vioscreen_v_other
2.7416440360000003
vioscreen_v_potato
0.234191769
vioscreen_v_starcy
0.079287673
vioscreen_v_tomato
0.83983564
vioscreen_v_total
5.658793745
vioscreen_valine
4.028356097
vioscreen_veg5_day
10.5
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
11.3
vioscreen_visit
1.0
vioscreen_vita_iu
33919.42192
vioscreen_vita_rae
1812.082534
vioscreen_vita_re
3484.7489729999998
vioscreen_vitb12
2.6596437219999998
vioscreen_vitb6
2.864685226
vioscreen_vitc
353.9953553
vioscreen_vitd
4.251041444
vioscreen_vitd2
0.113589039
vioscreen_vitd3
4.137479599
vioscreen_vitd_iu
170.04165769999997
vioscreen_vite_iu
28.46452269
vioscreen_vitk
978.7482877
vioscreen_water
3865.0297950000004
vioscreen_weight
Not provided
vioscreen_wgrain
2.396821991
vioscreen_whole_grain_servings
1.60458
vioscreen_xylitol
0.050821915999999995
vioscreen_zinc
10.86950717
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)