American Gut Project; 10317.000023299
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633067
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023299
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23299
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1979.0
bmi
19.6
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-17
collection month
January
collection season
Winter
collection time
08:00
collection_timestamp
2015-01-17 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Canada
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1575.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f35f7809c3413dd7ef95a360c856b70c426e5f422244d54cc40f3ff20bebdc2be73d82c99778765a6ca1b533037d372eb742d96230a3dc54bb81b681a643f701
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-105.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023299
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
04e29cac1540c30b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.141150686
vioscreen_a_cal
21.07183621
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.139315002
vioscreen_addsugar
10.84879468
vioscreen_adsugtot
10.36520561
vioscreen_age
215.0
vioscreen_alanine
2.866739351
vioscreen_alcohol
1.9802739390000001
vioscreen_alcohol_servings
0.14115
vioscreen_alphacar
2656.7702050000003
vioscreen_alphtoce
8.775670885
vioscreen_alphtoco
7.496383374
vioscreen_arginine
3.626794266
vioscreen_ash
22.86756475
vioscreen_aspartam
0.0
vioscreen_aspartic
7.194218215
vioscreen_avcarb
245.0366438
vioscreen_bcodeid
Not provided
vioscreen_betacar
7301.9801370000005
vioscreen_betacryp
128.84076409999997
vioscreen_betaine
51.23860231
vioscreen_betatoco
0.19923288
vioscreen_biochana
0.026520548999999997
vioscreen_bmi
Not provided
vioscreen_caffeine
208.1589041
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.39071
vioscreen_calcium_servings
2.2490099999999997
vioscreen_calories
1940.084418
vioscreen_carbo
290.9508562
vioscreen_cholest
284.78505989999996
vioscreen_choline
425.4857449
vioscreen_clac9t11
0.11641095300000001
vioscreen_clat10c12
0.021041095
vioscreen_copper
2.376164517
vioscreen_coumest
0.025178084
vioscreen_cystine
1.0701368359999999
vioscreen_d_cheese
0.239232876
vioscreen_d_milk
0.144986296
vioscreen_d_tot_soym
0.39071237200000003
vioscreen_d_total
0.39071237200000003
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.113698641
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.0286025789999997
vioscreen_discfat_oil
20.12961526
vioscreen_discfat_sol
29.97624679
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.357260257
vioscreen_f_nj_citmlb
0.355890394
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.355890394
vioscreen_f_other
0.0
vioscreen_f_total
0.357260257
vioscreen_fat
61.73268408
vioscreen_fiber
45.88167273
vioscreen_fibh2o
13.74873983
vioscreen_fibinso
32.01325985
vioscreen_finished
1/31/15
vioscreen_fish_servings
0.53596
vioscreen_fol_deqv
396.0429795
vioscreen_fol_nat
331.5535103
vioscreen_fol_syn
37.92421875
vioscreen_formontn
0.00509589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.7
vioscreen_fructose
7.413534755
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.75506851
vioscreen_g_total
7.7632063360000005
vioscreen_g_whl
7.008110151
vioscreen_galactos
0.018410958
vioscreen_gammtoco
11.62627355
vioscreen_gender
false
vioscreen_genistn
0.367232858
vioscreen_glac
135.8118686
vioscreen_gltc
157.6112479
vioscreen_glucose
8.915232368
vioscreen_glutamic
11.783205800000001
vioscreen_glycine
2.5235615769999997
vioscreen_glycitn
0.019452055
vioscreen_grams
6111.863699
vioscreen_hei2010_dairy
1.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
2.2
vioscreen_hei2010_fruit
1.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.3
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.2
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.5
vioscreen_hei_non_juice_frt
2.3
vioscreen_hei_oils
8.6
vioscreen_hei_sat_fat
7.4
vioscreen_hei_score
71.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.5294794790000001
vioscreen_inositol
0.016273974
vioscreen_iron
16.35816299
vioscreen_isoleuc
2.780876933
vioscreen_isomalt
0.0
vioscreen_joules
8117.3075340000005
vioscreen_juice_servings
0.00277
vioscreen_lactitol
0.0
vioscreen_lactose
2.322876645
vioscreen_legumes
1.012328767
vioscreen_leucine
4.735424805
vioscreen_line_gi
582.2047945
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1985.8339039999998
vioscreen_lycopene
5316.768836
vioscreen_lysine
3.729917929
vioscreen_m_egg
1.014602703
vioscreen_m_fish_hi
0.305452049
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.597068473
vioscreen_m_nutsd
0.009013699
vioscreen_m_organ
0.0
vioscreen_m_poult
0.291616445
vioscreen_m_soy
0.009424658
vioscreen_magnes
537.922988
vioscreen_maltitol
0.0
vioscreen_maltose
0.524465733
vioscreen_mangan
9.830768407999999
vioscreen_mannitol
0.296493154
vioscreen_methhis3
2.587260374
vioscreen_methion
1.143424674
vioscreen_mfa141
0.033452055
vioscreen_mfa161
0.6600821720000001
vioscreen_mfa181
18.97479532
vioscreen_mfa201
0.141999995
vioscreen_mfa221
0.06068493
vioscreen_mfatot
19.92597255
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.489561482999999
vioscreen_nccglbr
182.3029966
vioscreen_nccglgr
127.495152
vioscreen_niacin
15.8406036
vioscreen_niacineq
29.09186376
vioscreen_nitrogen
10.36441032
vioscreen_non_fried_fish_servings
0.53596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.414054975
vioscreen_oxalic
280.4861087
vioscreen_oxalicm
245.54610449999998
vioscreen_pantothe
6.273398036000001
vioscreen_pectins
5.124766896000001
vioscreen_pfa182
11.88723379
vioscreen_pfa183
1.232082168
vioscreen_pfa184
0.013726027
vioscreen_pfa204
0.09915068099999999
vioscreen_pfa205
0.044383564
vioscreen_pfa225
0.018712329
vioscreen_pfa226
0.105315075
vioscreen_pfatot
13.43257706
vioscreen_phenylal
3.062383615
vioscreen_phosphor
1435.173202
vioscreen_phytic
1734.041952
vioscreen_pinitol
0.000027399999999999995
vioscreen_potass
3763.829795
vioscreen_procdate
10/28/15
vioscreen_proline
3.0772875639999997
vioscreen_protanim
15.96621896
vioscreen_protein
63.57375856
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
47.60803724
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
583.0
vioscreen_retinol
368.14477739999995
vioscreen_rgrain
0.665205446
vioscreen_ribofla
1.297698724
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.1076200000000003
vioscreen_satoco
0.014931506
vioscreen_selenium
102.417348
vioscreen_serine
3.360136853
vioscreen_sfa100
0.693671323
vioscreen_sfa120
0.760684831
vioscreen_sfa140
2.289122866
vioscreen_sfa160
11.99753585
vioscreen_sfa170
0.164657541
vioscreen_sfa180
4.443781103
vioscreen_sfa200
0.09632877699999999
vioscreen_sfa220
0.049123289
vioscreen_sfa40
0.8689041759999999
vioscreen_sfa60
0.534137005
vioscreen_sfa80
0.318931517
vioscreen_sfatot
22.41660424
vioscreen_sodium
4349.6058219999995
vioscreen_sorbitol
0.010109589
vioscreen_srvid
17030.0
vioscreen_starch
194.3290882
vioscreen_started
1/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.98556159
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.19120546100000002
vioscreen_tfa161t
0.015561643
vioscreen_tfa181t
1.4306026930000002
vioscreen_tfa182t
0.18216439899999998
vioscreen_tgrain
7.869123234
vioscreen_thiamin
1.576602465
vioscreen_threonin
2.372027337
vioscreen_time
10.0
vioscreen_totaltfa
1.635452229
vioscreen_totcla
0.137616458
vioscreen_totfolat
369.4776113
vioscreen_totsugar
38.50035317
vioscreen_tryptoph
0.794520632
vioscreen_tyrosine
1.962849155
vioscreen_user_id
17030.0
vioscreen_v_drkgr
0.57413698
vioscreen_v_orange
0.582273969
vioscreen_v_other
0.590301388
vioscreen_v_potato
2.0141917609999997
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.33457535
vioscreen_v_total
4.095479385
vioscreen_valine
3.393671072
vioscreen_veg5_day
7.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
15718.43425
vioscreen_vita_rae
1092.711301
vioscreen_vita_re
1817.2773969999998
vioscreen_vitb12
1.402904103
vioscreen_vitb6
2.281945299
vioscreen_vitc
146.1652611
vioscreen_vitd
3.7099452189999997
vioscreen_vitd2
0.0
vioscreen_vitd3
3.7099452189999997
vioscreen_vitd_iu
148.39780880000004
vioscreen_vite_iu
11.17284889
vioscreen_vitk
176.9188249
vioscreen_water
5694.80274
vioscreen_weight
Not provided
vioscreen_wgrain
7.203917621
vioscreen_whole_grain_servings
7.00811
vioscreen_xylitol
0.011068493
vioscreen_zinc
15.707752300000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Daily