American Gut Project; 10317.000020055
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632420
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020055
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20055
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1959.0
bmi
17.71
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2014-12-17
collection month
December
collection season
Winter
collection time
10:30
collection_timestamp
2014-12-17 10:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by an alternative medicine practitioner
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
15.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
5d3c8c53d8034b7dcbd908de6efa6a77eb2d647fbd1b830a3e63d1d7182119e4ca2e972004929e247ac8515296f12fc8a6a9afb8c014325f6714f2ba51c34ef6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-121.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000020055
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
2a95822cb1f96d82
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.436849181
vioscreen_addsugar
22.95515036
vioscreen_adsugtot
20.77438196
vioscreen_age
214.0
vioscreen_alanine
1.869068386
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
11576.86575
vioscreen_alphtoce
18.88907053
vioscreen_alphtoco
18.22859857
vioscreen_arginine
2.158547932
vioscreen_ash
15.31750722
vioscreen_aspartam
0.0
vioscreen_aspartic
3.824767565
vioscreen_avcarb
128.4970783
vioscreen_bcodeid
Not provided
vioscreen_betacar
43155.46301
vioscreen_betacryp
77.52715111
vioscreen_betaine
67.07600064
vioscreen_betatoco
0.21446575
vioscreen_biochana
0.004
vioscreen_bmi
Not provided
vioscreen_caffeine
186.8449272
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.0
vioscreen_calcium_servings
1.84277
vioscreen_calories
1343.8699490000001
vioscreen_carbo
170.0254067
vioscreen_cholest
46.18298373
vioscreen_choline
212.72221749999997
vioscreen_clac9t11
0.006712329
vioscreen_clat10c12
0.002547945
vioscreen_copper
1.140191901
vioscreen_coumest
0.0070136980000000005
vioscreen_cystine
0.55145201
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.0
vioscreen_d_tot_soym
0.0
vioscreen_d_total
0.0
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.007835616
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.9668767220000001
vioscreen_discfat_oil
54.24506635
vioscreen_discfat_sol
0.75079446
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0030410959999999996
vioscreen_f_citmlb
1.053561694
vioscreen_f_nj_citmlb
1.046082212
vioscreen_f_nj_other
3.133150618
vioscreen_f_nj_total
4.179232997
vioscreen_f_other
3.133150618
vioscreen_f_total
4.186712396
vioscreen_fat
69.44654859
vioscreen_fiber
41.5291524
vioscreen_fibh2o
8.758631207
vioscreen_fibinso
32.96093215
vioscreen_finished
10/26/14
vioscreen_fish_servings
0.53596
vioscreen_fol_deqv
584.1215325000001
vioscreen_fol_nat
584.1215325000001
vioscreen_fol_syn
0.0
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.0
vioscreen_frtsumm
8.4
vioscreen_fructose
38.84410852
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.029397259
vioscreen_g_total
0.029397259
vioscreen_g_whl
0.0
vioscreen_galactos
0.123068488
vioscreen_gammtoco
5.642329302
vioscreen_gender
false
vioscreen_genistn
0.007506849
vioscreen_glac
40.28296233
vioscreen_gltc
48.73317637
vioscreen_glucose
30.06438356
vioscreen_glutamic
5.64635595
vioscreen_glycine
1.48964409
vioscreen_glycitn
0.0
vioscreen_grams
2707.768151
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.3
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.9
vioscreen_hei2010_sea_foods_plant_protiens
1.4
vioscreen_hei2010_sodium
5.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
4.6
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
68.7
vioscreen_hei_sodium
4.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.845287668
vioscreen_inositol
0.197150703
vioscreen_iron
10.19435667
vioscreen_isoleuc
1.5099726430000002
vioscreen_isomalt
0.0
vioscreen_joules
5622.75137
vioscreen_juice_servings
0.01496
vioscreen_lactitol
0.0
vioscreen_lactose
0.046356165
vioscreen_legumes
0.0
vioscreen_leucine
2.216082011
vioscreen_line_gi
352.38011560000007
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
25717.64384
vioscreen_lycopene
446.9988442
vioscreen_lysine
2.326821858
vioscreen_m_egg
0.00739726
vioscreen_m_fish_hi
0.305452049
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.31942464800000003
vioscreen_m_mpf
1.553780835
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.9289040759999999
vioscreen_m_soy
0.0
vioscreen_magnes
275.781036
vioscreen_maltitol
0.0
vioscreen_maltose
1.394191711
vioscreen_mangan
5.245013511
vioscreen_mannitol
1.662191814
vioscreen_methhis3
6.487178269
vioscreen_methion
0.6255616070000001
vioscreen_mfa141
0.004465753
vioscreen_mfa161
1.045369773
vioscreen_mfa181
38.10542059
vioscreen_mfa201
0.33139725800000003
vioscreen_mfa221
0.088164384
vioscreen_mfatot
39.65219392
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
18.22859857
vioscreen_nccglbr
84.41171875
vioscreen_nccglgr
59.04564426
vioscreen_niacin
11.79906892
vioscreen_niacineq
18.34685092
vioscreen_nitrogen
5.482903802
vioscreen_non_fried_fish_servings
0.53596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.428000087
vioscreen_oxalic
719.5195205
vioscreen_oxalicm
663.8044521
vioscreen_pantothe
4.39432858
vioscreen_pectins
9.615891214
vioscreen_pfa182
12.80632759
vioscreen_pfa183
2.25704145
vioscreen_pfa184
0.013232876999999999
vioscreen_pfa204
0.052986302
vioscreen_pfa205
0.04180822
vioscreen_pfa225
0.023452056000000002
vioscreen_pfa226
0.092821921
vioscreen_pfatot
15.32169842
vioscreen_phenylal
1.335561674
vioscreen_phosphor
608.6446062000001
vioscreen_phytic
385.9704195
vioscreen_pinitol
0.0
vioscreen_potass
3987.3421229999994
vioscreen_procdate
10/28/15
vioscreen_proline
1.4137809019999998
vioscreen_protanim
13.21090406
vioscreen_protein
34.15920644
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.95019264
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
772.0
vioscreen_retinol
12.15210964
vioscreen_rgrain
0.018794521
vioscreen_ribofla
1.209972643
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
8.96205
vioscreen_satoco
0.0
vioscreen_selenium
23.33706924
vioscreen_serine
1.370630134
vioscreen_sfa100
0.002958904
vioscreen_sfa120
0.009178081999999999
vioscreen_sfa140
0.08041096
vioscreen_sfa160
7.868739967000001
vioscreen_sfa170
0.021315069
vioscreen_sfa180
1.668712376
vioscreen_sfa200
0.22380822600000003
vioscreen_sfa220
0.108438361
vioscreen_sfa40
0.0
vioscreen_sfa60
0.0
vioscreen_sfa80
0.000164384
vioscreen_sfatot
10.03235699
vioscreen_sodium
2063.6113010000004
vioscreen_sorbitol
2.015808105
vioscreen_srvid
14266.0
vioscreen_starch
10.83493084
vioscreen_started
10/26/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
27.01644103
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.011232878
vioscreen_tfa181t
0.09202739800000001
vioscreen_tfa182t
0.126027387
vioscreen_tgrain
0.018794521
vioscreen_thiamin
0.815589215
vioscreen_threonin
1.688767023
vioscreen_time
10.0
vioscreen_totaltfa
0.226958915
vioscreen_totcla
0.009452055
vioscreen_totfolat
584.1215325000001
vioscreen_totsugar
98.88027611
vioscreen_tryptoph
0.393808234
vioscreen_tyrosine
1.045643846
vioscreen_user_id
14266.0
vioscreen_v_drkgr
2.8883561639999997
vioscreen_v_orange
2.584273999
vioscreen_v_other
2.268629936
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.06671233
vioscreen_v_total
7.807973031
vioscreen_valine
1.639287578
vioscreen_veg5_day
16.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
15.6
vioscreen_visit
1.0
vioscreen_vita_iu
81677.13425
vioscreen_vita_rae
4094.0424659999994
vioscreen_vita_re
8175.929451999999
vioscreen_vitb12
0.685013695
vioscreen_vitb6
1.92238318
vioscreen_vitc
255.94090330000003
vioscreen_vitd
1.4037259869999998
vioscreen_vitd2
0.0
vioscreen_vitd3
1.4037259869999998
vioscreen_vitd_iu
56.14903949
vioscreen_vite_iu
27.19430116
vioscreen_vitk
1285.881592
vioscreen_water
2420.732705
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.120739736
vioscreen_zinc
4.784657267
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
45.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never