10317.000030391; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634197
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030391
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030391
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
25.97
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-20
collection month
July
collection season
Summer
collection time
08:55
collection_timestamp
2015-07-20 08:55
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
91.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
163.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
9ead3bd4d632ebbc798cff95c93eea79474454c70379b1f2434f0cd95fa691fec4e71c9d944660888de98f8b41598c620b39317459963b8a9ff4057cbe588bd8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030391
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
9754eca797c6b037
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.4743287809999999
vioscreen_a_cal
168.9770762
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.204109589
vioscreen_addsugar
30.15898705
vioscreen_adsugtot
27.38339576
vioscreen_age
215.0
vioscreen_alanine
3.647397394
vioscreen_alcohol
22.14235606
vioscreen_alcohol_servings
1.47433
vioscreen_alphacar
1888.8582190000002
vioscreen_alphtoce
8.745178055
vioscreen_alphtoco
8.164439079
vioscreen_arginine
4.034083035
vioscreen_ash
19.40934423
vioscreen_aspartam
0.0
vioscreen_aspartic
6.608575021
vioscreen_avcarb
104.4248074
vioscreen_bcodeid
Not provided
vioscreen_betacar
10431.939040000001
vioscreen_betacryp
68.87340004
vioscreen_betaine
101.0542487
vioscreen_betatoco
0.137287683
vioscreen_biochana
0.004931507
vioscreen_bmi
Not provided
vioscreen_caffeine
416.31656680000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.0050700000000001
vioscreen_calcium_servings
2.40627
vioscreen_calories
1555.520205
vioscreen_carbo
122.13662240000002
vioscreen_cholest
335.37651969999996
vioscreen_choline
400.22542810000004
vioscreen_clac9t11
0.163835614
vioscreen_clat10c12
0.03953425
vioscreen_copper
1.645424704
vioscreen_coumest
0.177616443
vioscreen_cystine
0.887479348
vioscreen_d_cheese
0.293698643
vioscreen_d_milk
0.21098630699999998
vioscreen_d_tot_soym
1.00506851
vioscreen_d_total
1.00506851
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.238876719
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.049917895
vioscreen_discfat_oil
18.89830239
vioscreen_discfat_sol
37.27770227
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
0.45756162899999997
vioscreen_f_nj_citmlb
0.454410961
vioscreen_f_nj_other
0.193232873
vioscreen_f_nj_total
0.6476438760000001
vioscreen_f_other
0.193232873
vioscreen_f_total
0.650794544
vioscreen_fat
74.07285959
vioscreen_fiber
17.71219499
vioscreen_fibh2o
5.851315015
vioscreen_fibinso
11.90797437
vioscreen_finished
7/19/15
vioscreen_fish_servings
1.61327
vioscreen_fol_deqv
378.83167810000003
vioscreen_fol_nat
334.5450342
vioscreen_fol_syn
26.05901381
vioscreen_formontn
0.000849315
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.3
vioscreen_fructose
10.51194416
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.163397217
vioscreen_g_total
1.278931584
vioscreen_g_whl
0.115534242
vioscreen_galactos
0.740356111
vioscreen_gammtoco
5.160109094
vioscreen_gender
false
vioscreen_genistn
0.14400000400000001
vioscreen_glac
41.07830694
vioscreen_gltc
45.39035745
vioscreen_glucose
11.70643862
vioscreen_glutamic
11.90714897
vioscreen_glycine
3.155917567
vioscreen_glycitn
0.013643836000000001
vioscreen_grams
3647.557192
vioscreen_hei2010_dairy
5.0
vioscreen_hei2010_empty_calories
12.9
vioscreen_hei2010_fatty_acids
2.3
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.3
vioscreen_hei2010_sea_foods_plant_protiens
4.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
51.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
7.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.995753291
vioscreen_inositol
0.154602741
vioscreen_iron
10.25734295
vioscreen_isoleuc
3.251233412
vioscreen_isomalt
0.0
vioscreen_joules
6508.299315
vioscreen_juice_servings
0.00633
vioscreen_lactitol
0.0
vioscreen_lactose
10.36884899
vioscreen_legumes
0.0
vioscreen_leucine
5.446986034
vioscreen_line_gi
217.7311216
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
11416.13288
vioscreen_lycopene
2549.899658
vioscreen_lysine
5.377807617
vioscreen_m_egg
0.580520546
vioscreen_m_fish_hi
0.68994521
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.886273946
vioscreen_m_meat
2.329369783
vioscreen_m_mpf
5.655589148
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.315835613
vioscreen_m_poult
1.2048218609999999
vioscreen_m_soy
0.001616438
vioscreen_magnes
295.02788960000004
vioscreen_maltitol
0.0
vioscreen_maltose
1.318191654
vioscreen_mangan
4.219287109
vioscreen_mannitol
0.296410966
vioscreen_methhis3
19.28148009
vioscreen_methion
1.70569851
vioscreen_mfa141
0.118301371
vioscreen_mfa161
1.691177995
vioscreen_mfa181
26.20578179
vioscreen_mfa201
0.35904114600000003
vioscreen_mfa221
0.120383558
vioscreen_mfatot
28.69495933
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.164439079
vioscreen_nccglbr
76.47419735
vioscreen_nccglgr
53.49191995
vioscreen_niacin
17.35317717
vioscreen_niacineq
29.65531625
vioscreen_nitrogen
11.22093054
vioscreen_non_fried_fish_servings
1.61327
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.814931708
vioscreen_oxalic
619.0942637
vioscreen_oxalicm
625.6315068
vioscreen_pantothe
5.855397849
vioscreen_pectins
3.355341663
vioscreen_pfa182
9.701753799
vioscreen_pfa183
1.439671347
vioscreen_pfa184
0.027890412000000003
vioscreen_pfa204
0.18123286
vioscreen_pfa205
0.09465753199999999
vioscreen_pfa225
0.046082190999999995
vioscreen_pfa226
0.207041074
vioscreen_pfatot
11.84561617
vioscreen_phenylal
3.0109037219999997
vioscreen_phosphor
1043.360531
vioscreen_phytic
233.4006849
vioscreen_pinitol
0.005068493
vioscreen_potass
3332.417466
vioscreen_procdate
10/28/15
vioscreen_proline
3.881972389
vioscreen_protanim
55.70715968
vioscreen_protein
69.85550621
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.14073871
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
277.0
vioscreen_retinol
825.6883562
vioscreen_rgrain
1.044410852
vioscreen_ribofla
2.113479238
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.37118
vioscreen_satoco
0.0
vioscreen_selenium
83.12440604
vioscreen_serine
3.0979997189999997
vioscreen_sfa100
0.517150628
vioscreen_sfa120
0.550849308
vioscreen_sfa140
2.285342533
vioscreen_sfa160
14.97577991
vioscreen_sfa170
0.115698639
vioscreen_sfa180
6.99115007
vioscreen_sfa200
0.104164374
vioscreen_sfa220
0.04712329
vioscreen_sfa40
0.5859451920000001
vioscreen_sfa60
0.34005478100000003
vioscreen_sfa80
0.22065751600000003
vioscreen_sfatot
26.97559129
vioscreen_sodium
3211.217808
vioscreen_sorbitol
0.149397257
vioscreen_srvid
20186.0
vioscreen_starch
28.46876873
vioscreen_started
7/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.93753211
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
5.070164343
vioscreen_tfa161t
0.072191782
vioscreen_tfa181t
1.463013699
vioscreen_tfa182t
0.349424681
vioscreen_tgrain
1.23936985
vioscreen_thiamin
1.041369713
vioscreen_threonin
2.8984652580000003
vioscreen_time
42.0
vioscreen_totaltfa
1.932547791
vioscreen_totcla
0.203068501
vioscreen_totfolat
360.6040668
vioscreen_totsugar
60.21887307
vioscreen_tryptoph
0.7387944470000001
vioscreen_tyrosine
2.493095837
vioscreen_user_id
20186.0
vioscreen_v_drkgr
0.790219158
vioscreen_v_orange
0.297232871
vioscreen_v_other
1.274903932
vioscreen_v_potato
0.42049309700000004
vioscreen_v_starcy
0.126273973
vioscreen_v_tomato
0.53717806
vioscreen_v_total
3.4463017710000003
vioscreen_valine
3.7215342060000003
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
21770.19726
vioscreen_vita_rae
1776.590411
vioscreen_vita_re
2727.490068
vioscreen_vitb12
7.835479987
vioscreen_vitb6
1.69104121
vioscreen_vitc
108.6221747
vioscreen_vitd
5.978767123
vioscreen_vitd2
0.0
vioscreen_vitd3
5.978767123
vioscreen_vitd_iu
239.1506849
vioscreen_vite_iu
12.15583663
vioscreen_vitk
426.0068921
vioscreen_water
3357.130822
vioscreen_weight
Not provided
vioscreen_wgrain
0.194931511
vioscreen_whole_grain_servings
0.11553
vioscreen_xylitol
0.05819178
vioscreen_zinc
9.604000562000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
69.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)