American Gut Project; 10317.000013038
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632350
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000013038
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000013038
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1969.0
bmi
21.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/10/2015
collection month
April
collection season
Spring
collection time
17:00
collection_timestamp
2015-04-10 17:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
5.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
944e393ff1cc7d8ffbc9cbcb2e01c9086a1fe6a0facf7a47422e3289a7da8493644ff4940989ae9055c5f8a9cbaba1d88eeaa98e45c278213bc28a2f8077744b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000013038
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f3c8ae60351b2e33
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.5056164470000001
vioscreen_a_cal
56.89197346
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.052137067
vioscreen_addsugar
23.10654698
vioscreen_adsugtot
20.2726014
vioscreen_age
215.0
vioscreen_alanine
11.15950744
vioscreen_alcohol
7.313616357999999
vioscreen_alcohol_servings
0.50562
vioscreen_alphacar
7538.350684999999
vioscreen_alphtoce
25.82655447
vioscreen_alphtoco
24.25221265
vioscreen_arginine
12.33104399
vioscreen_ash
37.48926584
vioscreen_aspartam
0.0
vioscreen_aspartic
18.98213961
vioscreen_avcarb
160.4863228
vioscreen_bcodeid
Not provided
vioscreen_betacar
29404.6411
vioscreen_betacryp
133.9136558
vioscreen_betaine
140.38246999999998
vioscreen_betatoco
0.34991783200000004
vioscreen_biochana
0.01819178
vioscreen_bmi
Not provided
vioscreen_caffeine
115.137896
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.49586
vioscreen_calcium_servings
2.88915
vioscreen_calories
3624.596575
vioscreen_carbo
192.90813359999999
vioscreen_cholest
1056.530223
vioscreen_choline
1099.024572
vioscreen_clac9t11
0.447479457
vioscreen_clat10c12
0.117726031
vioscreen_copper
3.781259364
vioscreen_coumest
0.071945206
vioscreen_cystine
2.51153414
vioscreen_d_cheese
0.13676712900000002
vioscreen_d_milk
0.287835589
vioscreen_d_tot_soym
0.495863071
vioscreen_d_total
0.495863071
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.703178092
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.339917996
vioscreen_discfat_oil
73.40789812
vioscreen_discfat_sol
94.51590325
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.274547985
vioscreen_f_nj_citmlb
0.196575363
vioscreen_f_nj_other
0.424301315
vioscreen_f_nj_total
0.620904081
vioscreen_f_other
0.439315002
vioscreen_f_total
0.7138904309999999
vioscreen_fat
228.5986301
vioscreen_fiber
32.42315657
vioscreen_fibh2o
7.8199198679999995
vioscreen_fibinso
24.59402558
vioscreen_finished
3/3/15
vioscreen_fish_servings
12.743269999999999
vioscreen_fol_deqv
716.9847603
vioscreen_fol_nat
619.6361728999999
vioscreen_fol_syn
57.24019692
vioscreen_formontn
0.001835616
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
0.6
vioscreen_frtsumm
1.4
vioscreen_fructose
14.14764555
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.739890237
vioscreen_g_total
3.5688770869999997
vioscreen_g_whl
0.8289863479999999
vioscreen_galactos
0.420027307
vioscreen_gammtoco
14.01218964
vioscreen_gender
false
vioscreen_genistn
0.795095951
vioscreen_glac
64.09229452
vioscreen_gltc
72.670564
vioscreen_glucose
16.24244167
vioscreen_glutamic
31.23273759
vioscreen_glycine
9.766299229
vioscreen_glycitn
0.252438334
vioscreen_grams
3861.77774
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
15.9
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
1.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
56.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.1
vioscreen_hei2010_whole_grains
1.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.2
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
2.1
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
52.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.8
vioscreen_height
Not provided
vioscreen_histidin
5.823341182
vioscreen_inositol
0.112794536
vioscreen_iron
21.9745465
vioscreen_isoleuc
9.047341877000001
vioscreen_isomalt
0.0
vioscreen_joules
15165.32466
vioscreen_juice_servings
0.18595
vioscreen_lactitol
0.0
vioscreen_lactose
4.874301356
vioscreen_legumes
0.183013707
vioscreen_leucine
15.36252408
vioscreen_line_gi
370.5177654
vioscreen_low_fat_dairy_serving
0.07121
vioscreen_lutzeax
19570.60959
vioscreen_lycopene
13364.682190000001
vioscreen_lysine
15.72282213
vioscreen_m_egg
1.624876592
vioscreen_m_fish_hi
5.33367134
vioscreen_m_fish_lo
1.928301249
vioscreen_m_frank
0.70736987
vioscreen_m_meat
8.61498689
vioscreen_m_mpf
20.14712382
vioscreen_m_nutsd
0.622520551
vioscreen_m_organ
0.879835657
vioscreen_m_poult
2.682958817
vioscreen_m_soy
0.00660274
vioscreen_magnes
506.4889983
vioscreen_maltitol
0.0
vioscreen_maltose
1.5722191380000001
vioscreen_mangan
4.373259913
vioscreen_mannitol
0.744383595
vioscreen_methhis3
68.7544467
vioscreen_methion
5.011835468999999
vioscreen_mfa141
0.388465819
vioscreen_mfa161
5.052328366
vioscreen_mfa181
92.22864940000001
vioscreen_mfa201
1.4725754830000002
vioscreen_mfa221
0.9950958670000001
vioscreen_mfatot
100.612789
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
24.25221265
vioscreen_nccglbr
126.3781571
vioscreen_nccglgr
88.39145976
vioscreen_niacin
52.35469285
vioscreen_niacineq
87.09646297
vioscreen_nitrogen
31.5572881
vioscreen_non_fried_fish_servings
12.743269999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
6.291891187
vioscreen_oxalic
665.5625
vioscreen_oxalicm
669.6166096
vioscreen_pantothe
11.98958824
vioscreen_pectins
6.537096666
vioscreen_pfa182
26.81523438
vioscreen_pfa183
3.519753652
vioscreen_pfa184
0.22326028899999997
vioscreen_pfa204
0.5541644370000001
vioscreen_pfa205
0.7480547340000001
vioscreen_pfa225
0.288575347
vioscreen_pfa226
1.51457553
vioscreen_pfatot
34.11616278
vioscreen_phenylal
8.160136184
vioscreen_phosphor
2413.737842
vioscreen_phytic
552.9214041
vioscreen_pinitol
0.01219178
vioscreen_potass
5873.015068
vioscreen_procdate
10/28/15
vioscreen_proline
8.90591623
vioscreen_protanim
166.29137409999998
vioscreen_protein
195.46299230000002
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.17240743
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
533.0
vioscreen_retinol
2360.217979
vioscreen_rgrain
2.477534046
vioscreen_ribofla
3.3281641289999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.71096
vioscreen_satoco
0.0
vioscreen_selenium
252.80258990000002
vioscreen_serine
8.376357153999999
vioscreen_sfa100
1.5372603740000002
vioscreen_sfa120
1.641972456
vioscreen_sfa140
6.554603221
vioscreen_sfa160
42.41435681
vioscreen_sfa170
0.451068491
vioscreen_sfa180
17.68498636
vioscreen_sfa200
0.429917803
vioscreen_sfa220
0.257917827
vioscreen_sfa40
1.809232529
vioscreen_sfa60
1.122821797
vioscreen_sfa80
0.682712377
vioscreen_sfatot
75.08925514
vioscreen_sodium
8136.156164
vioscreen_sorbitol
0.10912329300000001
vioscreen_srvid
17257.0
vioscreen_starch
77.87498395
vioscreen_started
3/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.12268301
vioscreen_sweet_servings
0.10958
vioscreen_tagatose
0.611479459
vioscreen_tfa161t
0.174410958
vioscreen_tfa181t
4.854959399
vioscreen_tfa182t
0.6922739109999999
vioscreen_tgrain
3.3644387439999996
vioscreen_thiamin
2.096219666
vioscreen_threonin
8.333698095
vioscreen_time
26.0
vioscreen_totaltfa
5.7842472439999995
vioscreen_totcla
0.563232924
vioscreen_totfolat
676.8764127000001
vioscreen_totsugar
61.08419307
vioscreen_tryptoph
2.083534554
vioscreen_tyrosine
6.658577028
vioscreen_user_id
17257.0
vioscreen_v_drkgr
1.297890274
vioscreen_v_orange
1.6257533240000002
vioscreen_v_other
2.187918049
vioscreen_v_potato
0.30041096300000003
vioscreen_v_starcy
0.27641097800000003
vioscreen_v_tomato
0.66167126
vioscreen_v_total
6.350027423999999
vioscreen_valine
9.956082112
vioscreen_veg5_day
11.6
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
12.6
vioscreen_visit
1.0
vioscreen_vita_iu
63268.898629999996
vioscreen_vita_rae
5130.287329
vioscreen_vita_re
7900.349315
vioscreen_vitb12
25.21279698
vioscreen_vitb6
4.473725118
vioscreen_vitc
173.1639341
vioscreen_vitd
29.31033016
vioscreen_vitd2
0.0
vioscreen_vitd3
29.31033016
vioscreen_vitd_iu
1172.413206
vioscreen_vite_iu
36.16842626
vioscreen_vitk
873.0403252999998
vioscreen_water
3238.934589
vioscreen_weight
Not provided
vioscreen_wgrain
0.886931537
vioscreen_whole_grain_servings
0.82899
vioscreen_xylitol
0.056630142
vioscreen_zinc
24.73945313
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
61.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)