American Gut Project; 10317.000018397
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632409
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:45Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000018397
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
18397
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by an alternative medicine practitioner
birth year
1972.0
bmi
21.93
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Five or more
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-22
collection month
January
collection season
Winter
collection time
09:25
collection_timestamp
2015-01-22 09:25
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
350.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6d2fe85060bcb7ddea1733ba09b35ec693014628dd6fa5561cf0218e61a30851740f2d239971175994529c8258a68c75a40f5237cba50ff40e27c0482a7c68b2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000018397
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
74231ea61a763e6d
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.8158357
vioscreen_addsugar
52.50659782
vioscreen_adsugtot
29.46446383
vioscreen_age
214.0
vioscreen_alanine
1.00046579
vioscreen_alcohol
0.00509589
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
914.2618151
vioscreen_alphtoce
11.056602499999999
vioscreen_alphtoco
9.868329275
vioscreen_arginine
1.435013946
vioscreen_ash
11.39983546
vioscreen_aspartam
0.0
vioscreen_aspartic
2.384054607
vioscreen_avcarb
119.6794307
vioscreen_bcodeid
Not provided
vioscreen_betacar
9273.428767
vioscreen_betacryp
154.10622859999998
vioscreen_betaine
45.65241331
vioscreen_betatoco
0.21430137300000002
vioscreen_biochana
0.010027397
vioscreen_bmi
Not provided
vioscreen_caffeine
26.68350813
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.43041
vioscreen_calcium_servings
1.60375
vioscreen_calories
1140.229452
vioscreen_carbo
140.6669628
vioscreen_cholest
36.78043664
vioscreen_choline
112.2863121
vioscreen_clac9t11
0.045534254
vioscreen_clat10c12
0.009753424
vioscreen_copper
0.9090684859999999
vioscreen_coumest
0.056438357
vioscreen_cystine
0.260602726
vioscreen_d_cheese
0.166301372
vioscreen_d_milk
0.048602739000000006
vioscreen_d_tot_soym
0.43041093399999997
vioscreen_d_total
0.43041093399999997
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.105232866
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.5235334839999997
vioscreen_discfat_oil
18.96348058
vioscreen_discfat_sol
34.83835349
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000657534
vioscreen_f_citmlb
0.919561684
vioscreen_f_nj_citmlb
0.5922466120000001
vioscreen_f_nj_other
1.480739813
vioscreen_f_nj_total
2.072986342
vioscreen_f_other
1.530328787
vioscreen_f_total
2.449890471
vioscreen_fat
61.21024187
vioscreen_fiber
20.98476295
vioscreen_fibh2o
5.166410932
vioscreen_fibinso
15.92709627
vioscreen_finished
11/20/14
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
318.5667166
vioscreen_fol_nat
294.603232
vioscreen_fol_syn
14.09194537
vioscreen_formontn
0.00260274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.5
vioscreen_frtsumm
4.9
vioscreen_fructose
21.10737639
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.6022739779999999
vioscreen_g_total
0.605424646
vioscreen_g_whl
0.003150685
vioscreen_galactos
0.346657573
vioscreen_gammtoco
10.66668317
vioscreen_gender
false
vioscreen_genistn
0.138794489
vioscreen_glac
43.52575717
vioscreen_gltc
48.13130886
vioscreen_glucose
22.78731539
vioscreen_glutamic
4.336301035
vioscreen_glycine
0.927506956
vioscreen_glycitn
0.018219177
vioscreen_grams
2649.80411
vioscreen_hei2010_dairy
2.9
vioscreen_hei2010_empty_calories
4.2
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
6.1
vioscreen_hei_milk
2.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.6
vioscreen_hei_score
54.0
vioscreen_hei_sodium
5.1
vioscreen_hei_sol_fat_alc_add_sug
4.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
0.5316985670000001
vioscreen_inositol
0.218712355
vioscreen_iron
5.51662999
vioscreen_isoleuc
0.9461645679999999
vioscreen_isomalt
0.0
vioscreen_joules
4770.715753
vioscreen_juice_servings
0.75378
vioscreen_lactitol
0.0
vioscreen_lactose
4.114958797
vioscreen_legumes
0.124027388
vioscreen_leucine
1.6161096019999999
vioscreen_line_gi
217.6777825
vioscreen_low_fat_dairy_serving
0.26318
vioscreen_lutzeax
13690.673969999998
vioscreen_lycopene
2023.563014
vioscreen_lysine
1.299452021
vioscreen_m_egg
0.026465752999999998
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.053780825
vioscreen_m_mpf
0.096575342
vioscreen_m_nutsd
1.090794477
vioscreen_m_organ
0.0
vioscreen_m_poult
0.04279452
vioscreen_m_soy
0.040602739
vioscreen_magnes
208.5509632
vioscreen_maltitol
0.0
vioscreen_maltose
5.241781156
vioscreen_mangan
2.118766889
vioscreen_mannitol
0.61153414
vioscreen_methhis3
0.443534245
vioscreen_methion
0.388986373
vioscreen_mfa141
0.013561645
vioscreen_mfa161
0.7019999459999999
vioscreen_mfa181
29.53095569
vioscreen_mfa201
0.18750685600000003
vioscreen_mfa221
0.013260273000000001
vioscreen_mfatot
30.510303399999998
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.868329275
vioscreen_nccglbr
106.27458259999999
vioscreen_nccglgr
74.3304848
vioscreen_niacin
6.70857569
vioscreen_niacineq
10.92243753
vioscreen_nitrogen
3.8196710460000003
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.077753605
vioscreen_oxalic
358.8442637
vioscreen_oxalicm
387.8515839
vioscreen_pantothe
2.7265748739999998
vioscreen_pectins
5.129973446
vioscreen_pfa182
10.78328807
vioscreen_pfa183
1.074219335
vioscreen_pfa184
0.000465753
vioscreen_pfa204
0.008109589
vioscreen_pfa205
0.0007945210000000001
vioscreen_pfa225
0.000986301
vioscreen_pfa226
0.001287671
vioscreen_pfatot
11.89175273
vioscreen_phenylal
1.0489588909999998
vioscreen_phosphor
477.8693921
vioscreen_phytic
414.7106164
vioscreen_pinitol
0.0009315069999999999
vioscreen_potass
2043.6928079999998
vioscreen_procdate
10/28/15
vioscreen_proline
1.519150658
vioscreen_protanim
6.089425701000001
vioscreen_protein
23.20969874
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.11679152
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
736.0
vioscreen_retinol
84.26025257
vioscreen_rgrain
0.518794564
vioscreen_ribofla
0.697616494
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.81616
vioscreen_satoco
0.0
vioscreen_selenium
27.70136986
vioscreen_serine
1.1484110790000002
vioscreen_sfa100
0.260767103
vioscreen_sfa120
0.389561651
vioscreen_sfa140
1.007917681
vioscreen_sfa160
8.638302654
vioscreen_sfa170
0.054575343
vioscreen_sfa180
3.870602793
vioscreen_sfa200
0.140356184
vioscreen_sfa220
0.19687671399999998
vioscreen_sfa40
0.319862993
vioscreen_sfa60
0.18646572600000003
vioscreen_sfa80
0.12652057
vioscreen_sfatot
15.35613763
vioscreen_sodium
1632.6320210000001
vioscreen_sorbitol
0.956684855
vioscreen_srvid
14621.0
vioscreen_starch
16.18871201
vioscreen_started
11/20/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.15991679
vioscreen_sweet_servings
0.29974
vioscreen_tagatose
1.823917755
vioscreen_tfa161t
0.010767123
vioscreen_tfa181t
3.92087603
vioscreen_tfa182t
0.966931403
vioscreen_tgrain
0.60775343
vioscreen_thiamin
0.572630038
vioscreen_threonin
0.824493157
vioscreen_time
30.0
vioscreen_totaltfa
4.89969867
vioscreen_totcla
0.055315065
vioscreen_totfolat
308.6950985
vioscreen_totsugar
73.70304474
vioscreen_tryptoph
0.253725987
vioscreen_tyrosine
0.77569856
vioscreen_user_id
14621.0
vioscreen_v_drkgr
0.968794397
vioscreen_v_orange
0.187808207
vioscreen_v_other
0.72539723
vioscreen_v_potato
0.043123287
vioscreen_v_starcy
0.062191783
vioscreen_v_tomato
0.168986302
vioscreen_v_total
2.156246823
vioscreen_valine
1.1715891379999999
vioscreen_veg5_day
5.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.3
vioscreen_visit
1.0
vioscreen_vita_iu
16625.7589
vioscreen_vita_rae
901.5619007000001
vioscreen_vita_re
1718.862158
vioscreen_vitb12
0.482657529
vioscreen_vitb6
0.897150662
vioscreen_vitc
151.4993579
vioscreen_vitd
0.453753411
vioscreen_vitd2
0.001041096
vioscreen_vitd3
0.452739726
vioscreen_vitd_iu
18.15013645
vioscreen_vite_iu
14.72065497
vioscreen_vitk
584.4244863
vioscreen_water
2415.108562
vioscreen_weight
Not provided
vioscreen_wgrain
0.08895890699999999
vioscreen_whole_grain_servings
0.00315
vioscreen_xylitol
0.028136985
vioscreen_zinc
3.8542189510000004
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Occasionally (1-2 times/week)