American Gut Project; 10317.000023017
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632609
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023017
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23017
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
20.18
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
02/04/2015
collection month
February
collection season
Winter
collection time
09:00
collection_timestamp
2015-02-04 09:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
1.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
71083be40e3087120d4ba66c1a5fcee10e70abae775f769e3cfc257b64b546c82110328d32fc1a3b4898890f12a52741b089f5018c00c2c0a935753166d04c94
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
27.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-82.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023017
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
8e6fbe15a23f72c9
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.226958894
vioscreen_a_cal
28.33314962
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.6279176479999995
vioscreen_addsugar
33.50126017
vioscreen_adsugtot
26.58596961
vioscreen_age
215.0
vioscreen_alanine
4.5180008560000005
vioscreen_alcohol
3.5532056000000005
vioscreen_alcohol_servings
0.22696
vioscreen_alphacar
214.5236515
vioscreen_alphtoce
15.16967038
vioscreen_alphtoco
14.09564025
vioscreen_arginine
5.590712957999999
vioscreen_ash
17.94654725
vioscreen_aspartam
10.70342466
vioscreen_aspartic
8.08145267
vioscreen_avcarb
95.00607877
vioscreen_bcodeid
Not provided
vioscreen_betacar
8407.260959000001
vioscreen_betacryp
178.83176369999998
vioscreen_betaine
102.77466820000001
vioscreen_betatoco
0.359917795
vioscreen_biochana
0.005424658000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
396.5680651
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.6466
vioscreen_calcium_servings
2.20814
vioscreen_calories
1505.586986
vioscreen_carbo
114.55120929999998
vioscreen_cholest
183.4811858
vioscreen_choline
308.8217466
vioscreen_clac9t11
0.06857534400000001
vioscreen_clat10c12
0.022493151
vioscreen_copper
1.312575249
vioscreen_coumest
0.26676711
vioscreen_cystine
1.060274056
vioscreen_d_cheese
0.165178085
vioscreen_d_milk
0.44230137700000005
vioscreen_d_tot_soym
0.646602766
vioscreen_d_total
0.646602766
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
0.7948218779999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.964876692
vioscreen_discfat_oil
44.49627569
vioscreen_discfat_sol
14.02312179
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000027399999999999995
vioscreen_f_citmlb
0.030739724
vioscreen_f_nj_citmlb
0.028273969
vioscreen_f_nj_other
0.512958934
vioscreen_f_nj_total
0.541232927
vioscreen_f_other
0.512958934
vioscreen_f_total
0.543726046
vioscreen_fat
82.64089255
vioscreen_fiber
19.25665534
vioscreen_fibh2o
7.6962469229999995
vioscreen_fibinso
11.55531223
vioscreen_finished
2/3/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
378.9364726
vioscreen_fol_nat
263.028339
vioscreen_fol_syn
68.16992188
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04383
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.1
vioscreen_fructose
13.45167086
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.641397304
vioscreen_g_total
1.571150772
vioscreen_g_whl
0.92969862
vioscreen_galactos
0.198520566
vioscreen_gammtoco
8.150849476
vioscreen_gender
false
vioscreen_genistn
1.052958951
vioscreen_glac
44.63432417
vioscreen_gltc
48.82635381
vioscreen_glucose
14.13131421
vioscreen_glutamic
14.27914972
vioscreen_glycine
4.289397274
vioscreen_glycitn
0.14893150900000002
vioscreen_grams
4167.416096
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.5
vioscreen_hei2010_whole_grains
4.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.3
vioscreen_hei_grains
1.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
4.5
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.1
vioscreen_hei_score
73.8
vioscreen_hei_sodium
3.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.1
vioscreen_height
Not provided
vioscreen_histidin
2.48687694
vioscreen_inositol
0.039506852
vioscreen_iron
13.22772769
vioscreen_isoleuc
3.7666025660000004
vioscreen_isomalt
0.0
vioscreen_joules
6299.376027
vioscreen_juice_servings
0.0049
vioscreen_lactitol
0.0
vioscreen_lactose
5.496192075
vioscreen_legumes
0.015726027
vioscreen_leucine
6.405095516
vioscreen_line_gi
200.26701630000002
vioscreen_low_fat_dairy_serving
0.31575
vioscreen_lutzeax
12891.7863
vioscreen_lycopene
4490.868836
vioscreen_lysine
6.152492241
vioscreen_m_egg
0.46569866
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.09761643099999999
vioscreen_m_meat
4.061671594
vioscreen_m_mpf
6.505999838999999
vioscreen_m_nutsd
2.250274073
vioscreen_m_organ
0.0
vioscreen_m_poult
2.346712295
vioscreen_m_soy
0.038191782
vioscreen_magnes
346.27673369999997
vioscreen_maltitol
0.0
vioscreen_maltose
3.113178577
vioscreen_mangan
3.557397126
vioscreen_mannitol
0.122958897
vioscreen_methhis3
29.26150738
vioscreen_methion
1.970137087
vioscreen_mfa141
0.09819176
vioscreen_mfa161
1.204411086
vioscreen_mfa181
38.20893087
vioscreen_mfa201
0.41126027600000004
vioscreen_mfa221
0.01350685
vioscreen_mfatot
40.05165079
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.006381099999999
vioscreen_nccglbr
85.80843857
vioscreen_nccglgr
60.02311109
vioscreen_niacin
23.54649508
vioscreen_niacineq
38.25539651
vioscreen_nitrogen
13.94074272
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6995067019999999
vioscreen_oxalic
607.6329622999999
vioscreen_oxalicm
651.1432791
vioscreen_pantothe
5.976958476
vioscreen_pectins
2.908849262
vioscreen_pfa182
16.04553457
vioscreen_pfa183
1.6386299030000002
vioscreen_pfa184
0.000657534
vioscreen_pfa204
0.144575344
vioscreen_pfa205
0.010630137
vioscreen_pfa225
0.0270137
vioscreen_pfa226
0.024082192000000002
vioscreen_pfatot
17.95098593
vioscreen_phenylal
3.6033972339999996
vioscreen_phosphor
1050.525599
vioscreen_phytic
598.8946490000001
vioscreen_pinitol
0.0047945209999999995
vioscreen_potass
2878.8547949999997
vioscreen_procdate
10/28/15
vioscreen_proline
4.19821978
vioscreen_protanim
62.70345676
vioscreen_protein
85.41994863
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.71930918
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
573.0
vioscreen_retinol
173.76793659999998
vioscreen_rgrain
1.020054815
vioscreen_ribofla
2.080328954
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.61805
vioscreen_satoco
0.196849332
vioscreen_selenium
105.55477309999999
vioscreen_serine
3.686821423
vioscreen_sfa100
0.134383549
vioscreen_sfa120
0.26243838
vioscreen_sfa140
0.8863288770000001
vioscreen_sfa160
11.700081599999999
vioscreen_sfa170
0.06293151
vioscreen_sfa180
4.386356552
vioscreen_sfa200
0.300136995
vioscreen_sfa220
0.408273943
vioscreen_sfa40
0.14194520900000002
vioscreen_sfa60
0.068712334
vioscreen_sfa80
0.05813699
vioscreen_sfatot
18.66657615
vioscreen_sodium
2373.8952050000003
vioscreen_sorbitol
0.075945214
vioscreen_srvid
17059.0
vioscreen_starch
32.33002462
vioscreen_started
2/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.036767123
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.15964255
vioscreen_sweet_servings
0.22280999999999998
vioscreen_tagatose
0.524876759
vioscreen_tfa161t
0.038273972999999996
vioscreen_tfa181t
0.8393425090000001
vioscreen_tfa182t
0.17813699800000002
vioscreen_tgrain
2.0064657130000003
vioscreen_thiamin
1.1314521690000001
vioscreen_threonin
3.3031233280000003
vioscreen_time
17.0
vioscreen_totaltfa
1.080712305
vioscreen_totcla
0.092164403
vioscreen_totfolat
331.19726030000004
vioscreen_totsugar
49.53643515
vioscreen_tryptoph
0.882082085
vioscreen_tyrosine
2.901917006
vioscreen_user_id
17059.0
vioscreen_v_drkgr
0.93353422
vioscreen_v_orange
0.043013700999999994
vioscreen_v_other
0.7976987240000001
vioscreen_v_potato
0.065068493
vioscreen_v_starcy
0.002986301
vioscreen_v_tomato
0.265561645
vioscreen_v_total
2.107917514
vioscreen_valine
4.176931386000001
vioscreen_veg5_day
4.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.2
vioscreen_visit
1.0
vioscreen_vita_iu
14919.123290000001
vioscreen_vita_rae
890.7644692
vioscreen_vita_re
1607.7580480000001
vioscreen_vitb12
4.034438209
vioscreen_vitb6
2.071890886
vioscreen_vitc
109.39499140000001
vioscreen_vitd
2.352794741
vioscreen_vitd2
0.390684948
vioscreen_vitd3
1.9621095419999999
vioscreen_vitd_iu
94.11178965
vioscreen_vite_iu
21.05126017
vioscreen_vitk
546.3009846
vioscreen_water
3876.609247
vioscreen_weight
Not provided
vioscreen_wgrain
0.986410982
vioscreen_whole_grain_servings
0.9297
vioscreen_xylitol
0.020931508
vioscreen_zinc
12.70925862
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
56.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)