American Gut Project; 10317.000030023
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634092
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:18Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030023
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030023
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1975.0
bmi
24.01
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
10:50
collection_timestamp
2015-07-28 10:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
90.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
b99646578950f5cddef41eb30b302ac64ffa93396b679555dfbe88631468982208de360edcc0a41251481164baa0fd79e3134c426bbb2628df635cd96a1317ad
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
53.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.7
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030023
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
f5af07169d68ad46
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.395917835
vioscreen_a_cal
184.53003
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.072931828
vioscreen_addsugar
30.22317798
vioscreen_adsugtot
27.67651969
vioscreen_age
215.0
vioscreen_alanine
5.3923296370000005
vioscreen_alcohol
19.85295778
vioscreen_alcohol_servings
1.39592
vioscreen_alphacar
3372.0890409999997
vioscreen_alphtoce
22.13372351
vioscreen_alphtoco
20.3303818
vioscreen_arginine
6.738713345
vioscreen_ash
28.43189212
vioscreen_aspartam
0.0
vioscreen_aspartic
10.98591743
vioscreen_avcarb
198.0275471
vioscreen_bcodeid
Not provided
vioscreen_betacar
19325.591780000002
vioscreen_betacryp
176.91020980000002
vioscreen_betaine
185.44779540000002
vioscreen_betatoco
0.656739661
vioscreen_biochana
0.009452054
vioscreen_bmi
Not provided
vioscreen_caffeine
151.26087330000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.3606
vioscreen_calcium_servings
3.5934800000000005
vioscreen_calories
2377.882877
vioscreen_carbo
237.6368579
vioscreen_cholest
375.2670377
vioscreen_choline
597.4743151
vioscreen_clac9t11
0.067013686
vioscreen_clat10c12
0.017671235
vioscreen_copper
2.3116436680000003
vioscreen_coumest
0.071616437
vioscreen_cystine
1.432520535
vioscreen_d_cheese
0.09520547900000001
vioscreen_d_milk
0.891561681
vioscreen_d_tot_soym
1.36060281
vioscreen_d_total
1.36060281
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.09032877
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.897205426
vioscreen_discfat_oil
45.24543022
vioscreen_discfat_sol
22.8954222
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.07556164900000001
vioscreen_f_nj_citmlb
0.06728767
vioscreen_f_nj_other
0.505479452
vioscreen_f_nj_total
0.572767158
vioscreen_f_other
0.505479452
vioscreen_f_total
0.581041143
vioscreen_fat
102.67527829999999
vioscreen_fiber
39.60954356
vioscreen_fibh2o
9.974301691
vioscreen_fibinso
29.80073844
vioscreen_finished
7/28/15
vioscreen_fish_servings
3.0148099999999998
vioscreen_fol_deqv
637.2252568
vioscreen_fol_nat
555.4629709
vioscreen_fol_syn
48.08490475
vioscreen_formontn
0.0034246579999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.28493
vioscreen_frt5_day
0.2
vioscreen_frtsumm
1.2
vioscreen_fructose
12.71342573
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.525643795
vioscreen_g_total
4.23076707
vioscreen_g_whl
2.705123274
vioscreen_galactos
0.5877807620000001
vioscreen_gammtoco
15.12169708
vioscreen_gender
false
vioscreen_genistn
0.060986302
vioscreen_glac
93.53194563
vioscreen_gltc
103.9022367
vioscreen_glucose
14.714958800000002
vioscreen_glutamic
19.52013592
vioscreen_glycine
4.884438543
vioscreen_glycitn
0.0
vioscreen_grams
4963.045889999999
vioscreen_hei2010_dairy
4.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.5
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.4
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.5
vioscreen_hei_score
75.2
vioscreen_hei_sodium
1.5
vioscreen_hei_sol_fat_alc_add_sug
19.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
2.8240271160000003
vioscreen_inositol
0.102657538
vioscreen_iron
16.00314908
vioscreen_isoleuc
4.826218696000001
vioscreen_isomalt
0.0
vioscreen_joules
9949.058219
vioscreen_juice_servings
0.01655
vioscreen_lactitol
0.0
vioscreen_lactose
17.14389046
vioscreen_legumes
0.096136987
vioscreen_leucine
8.070137254
vioscreen_line_gi
516.0887842
vioscreen_low_fat_dairy_serving
0.94896
vioscreen_lutzeax
21520.33699
vioscreen_lycopene
7941.950685
vioscreen_lysine
7.376137762000001
vioscreen_m_egg
1.092301377
vioscreen_m_fish_hi
0.44027396399999996
vioscreen_m_fish_lo
1.277780862
vioscreen_m_frank
0.079150683
vioscreen_m_meat
0.659616423
vioscreen_m_mpf
5.732356325
vioscreen_m_nutsd
3.2723285
vioscreen_m_organ
0.067671235
vioscreen_m_poult
3.207863
vioscreen_m_soy
0.000410959
vioscreen_magnes
582.3520547999999
vioscreen_maltitol
0.0
vioscreen_maltose
1.63479422
vioscreen_mangan
6.360682657000001
vioscreen_mannitol
0.43476713
vioscreen_methhis3
20.99994649
vioscreen_methion
2.417616418
vioscreen_mfa141
0.041972602000000005
vioscreen_mfa161
1.601315015
vioscreen_mfa181
42.28238442
vioscreen_mfa201
0.496904138
vioscreen_mfa221
0.026136989
vioscreen_mfatot
44.61802761
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
20.3303818
vioscreen_nccglbr
141.6394799
vioscreen_nccglgr
99.06940283
vioscreen_niacin
30.9623582
vioscreen_niacineq
51.44827162
vioscreen_nitrogen
17.88655019
vioscreen_non_fried_fish_servings
3.0148099999999998
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.95175313
vioscreen_oxalic
866.6859589
vioscreen_oxalicm
918.1833903999999
vioscreen_pantothe
8.454027986
vioscreen_pectins
7.138329409
vioscreen_pfa182
22.81082513
vioscreen_pfa183
1.698684818
vioscreen_pfa184
0.005671233
vioscreen_pfa204
0.233561665
vioscreen_pfa205
0.055808221
vioscreen_pfa225
0.036082192
vioscreen_pfa226
0.15630137800000002
vioscreen_pfatot
25.14865689
vioscreen_phenylal
4.800192637
vioscreen_phosphor
1746.3172949999998
vioscreen_phytic
1143.955993
vioscreen_pinitol
0.0
vioscreen_potass
4972.362671
vioscreen_procdate
10/28/15
vioscreen_proline
5.864027717999999
vioscreen_protanim
64.45287885
vioscreen_protein
109.55454840000002
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
45.09492723
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
255.0
vioscreen_retinol
489.00958899999995
vioscreen_rgrain
1.246767143
vioscreen_ribofla
2.5241093880000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.62351
vioscreen_satoco
0.0
vioscreen_selenium
159.1669949
vioscreen_serine
5.079287511
vioscreen_sfa100
0.29769864
vioscreen_sfa120
0.41175344799999997
vioscreen_sfa140
1.338712342
vioscreen_sfa160
15.261451199999998
vioscreen_sfa170
0.075726026
vioscreen_sfa180
5.139972509
vioscreen_sfa200
0.340301388
vioscreen_sfa220
0.552657538
vioscreen_sfa40
0.37369861299999996
vioscreen_sfa60
0.21109587800000001
vioscreen_sfa80
0.137561662
vioscreen_sfatot
24.57972763
vioscreen_sodium
4356.048973
vioscreen_sorbitol
0.26627395800000003
vioscreen_srvid
20254.0
vioscreen_starch
95.90450557
vioscreen_started
7/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.76460295
vioscreen_sweet_servings
0.47671
vioscreen_tagatose
3.16923293
vioscreen_tfa161t
0.024219181
vioscreen_tfa181t
1.397671216
vioscreen_tfa182t
0.25364384100000004
vioscreen_tgrain
4.245013846
vioscreen_thiamin
1.697232516
vioscreen_threonin
4.300191634
vioscreen_time
23.0
vioscreen_totaltfa
1.7356438619999999
vioscreen_totcla
0.085068496
vioscreen_totfolat
603.5474743
vioscreen_totsugar
78.09327911
vioscreen_tryptoph
1.2287945470000001
vioscreen_tyrosine
3.735616438
vioscreen_user_id
20254.0
vioscreen_v_drkgr
1.623808226
vioscreen_v_orange
0.630958954
vioscreen_v_other
2.1610137519999997
vioscreen_v_potato
1.113972536
vioscreen_v_starcy
0.264931498
vioscreen_v_tomato
0.7941096059999999
vioscreen_v_total
6.588767525
vioscreen_valine
5.518630605
vioscreen_veg5_day
13.5
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
13.2
vioscreen_visit
1.0
vioscreen_vita_iu
36795.44658
vioscreen_vita_rae
2247.3511989999997
vioscreen_vita_re
4005.693151
vioscreen_vitb12
4.936684972
vioscreen_vitb6
3.2820275710000004
vioscreen_vitc
246.4236943
vioscreen_vitd
7.286137495
vioscreen_vitd2
0.0
vioscreen_vitd3
7.286137495
vioscreen_vitd_iu
291.4454998
vioscreen_vite_iu
30.32103756
vioscreen_vitk
913.0555651000001
vioscreen_water
4485.943493
vioscreen_weight
Not provided
vioscreen_wgrain
2.998219111
vioscreen_whole_grain_servings
2.70512
vioscreen_xylitol
0.036219179
vioscreen_zinc
13.43942503
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
82.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)