American Gut Project; 10317.000030148
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634136
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030148
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030148
antibiotic_history
Year
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1979.0
bmi
24.73
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/08/2015
collection month
September
collection season
Fall
collection time
13:01
collection_timestamp
2015-09-08 13:01
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Italy
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
20.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
173.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
928efcd51b22edf22fc9823ca24cc1c8f72b7708af270d33f20046ea7232e1453aeabaeba64d65d28f421c0b23667386e12220cfa63a55c9dbbb330a0320230e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000030148
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Regularly (3-5 times/week)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
7f92172115041d35
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.8025751819999998
vioscreen_a_cal
222.84683219999997
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.701726375
vioscreen_addsugar
21.68084867
vioscreen_adsugtot
20.41674069
vioscreen_age
215.0
vioscreen_alanine
2.45652006
vioscreen_alcohol
25.4372592
vioscreen_alcohol_servings
1.8025799999999998
vioscreen_alphacar
635.5203767
vioscreen_alphtoce
18.05824727
vioscreen_alphtoco
16.85087489
vioscreen_arginine
3.333014501
vioscreen_ash
14.79046581
vioscreen_aspartam
0.0
vioscreen_aspartic
5.2247398060000005
vioscreen_avcarb
117.9028253
vioscreen_bcodeid
Not provided
vioscreen_betacar
4484.2691780000005
vioscreen_betacryp
96.53251284
vioscreen_betaine
78.38449807
vioscreen_betatoco
0.463506829
vioscreen_biochana
0.010109589
vioscreen_bmi
Not provided
vioscreen_caffeine
3.2319998130000003
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.6765800000000001
vioscreen_calcium_servings
1.7149599999999998
vioscreen_calories
1893.23476
vioscreen_carbo
135.230961
vioscreen_cholest
139.24555859999998
vioscreen_choline
253.20545800000002
vioscreen_clac9t11
0.039205483
vioscreen_clat10c12
0.012383561999999999
vioscreen_copper
1.2879726459999998
vioscreen_coumest
0.065863016
vioscreen_cystine
0.634082157
vioscreen_d_cheese
0.29386299899999996
vioscreen_d_milk
0.133506848
vioscreen_d_tot_soym
0.676575334
vioscreen_d_total
0.676575334
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
2.294137281
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.762520568
vioscreen_discfat_oil
74.29728703
vioscreen_discfat_sol
14.40635568
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.31189040100000004
vioscreen_f_nj_citmlb
0.09093150300000001
vioscreen_f_nj_other
0.743424674
vioscreen_f_nj_total
0.834356188
vioscreen_f_other
0.743424674
vioscreen_f_total
1.055315075
vioscreen_fat
112.61045590000002
vioscreen_fiber
17.32841262
vioscreen_fibh2o
4.646000441
vioscreen_fibinso
12.7181654
vioscreen_finished
9/7/15
vioscreen_fish_servings
1.04385
vioscreen_fol_deqv
341.151113
vioscreen_fol_nat
283.1299872
vioscreen_fol_syn
34.08848994
vioscreen_formontn
0.00230137
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.31872
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.1
vioscreen_fructose
8.758246602
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.7994521890000001
vioscreen_g_total
1.944109689
vioscreen_g_whl
0.144712328
vioscreen_galactos
0.475369848
vioscreen_gammtoco
10.00808273
vioscreen_gender
false
vioscreen_genistn
3.428904578
vioscreen_glac
54.21450128
vioscreen_gltc
58.65394906
vioscreen_glucose
10.07953433
vioscreen_glutamic
10.15082406
vioscreen_glycine
2.343396999
vioscreen_glycitn
0.595725992
vioscreen_grams
2625.159418
vioscreen_hei2010_dairy
2.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
3.5
vioscreen_hei_fruit
3.5
vioscreen_hei_grains
1.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.4
vioscreen_hei_score
72.7
vioscreen_hei_sodium
6.5
vioscreen_hei_sol_fat_alc_add_sug
18.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
1.35210981
vioscreen_inositol
0.12016439599999999
vioscreen_iron
8.066575476
vioscreen_isoleuc
2.2030136319999998
vioscreen_isomalt
0.0
vioscreen_joules
7921.291781
vioscreen_juice_servings
0.44195
vioscreen_lactitol
0.0
vioscreen_lactose
5.986000375
vioscreen_legumes
0.041315067999999996
vioscreen_leucine
3.833616826
vioscreen_line_gi
269.7886986
vioscreen_low_fat_dairy_serving
0.25438
vioscreen_lutzeax
3262.731849
vioscreen_lycopene
6170.530822
vioscreen_lysine
3.1758902769999997
vioscreen_m_egg
0.35635618399999996
vioscreen_m_fish_hi
0.17484931399999998
vioscreen_m_fish_lo
0.42008219700000005
vioscreen_m_frank
0.09008218400000001
vioscreen_m_meat
0.9573972940000001
vioscreen_m_mpf
2.2239455130000003
vioscreen_m_nutsd
2.28476713
vioscreen_m_organ
0.0
vioscreen_m_poult
0.581561614
vioscreen_m_soy
0.39334244399999996
vioscreen_magnes
270.5027397
vioscreen_maltitol
0.0
vioscreen_maltose
0.94906842
vioscreen_mangan
2.271671327
vioscreen_mannitol
0.227753438
vioscreen_methhis3
7.913177574
vioscreen_methion
1.0664108490000002
vioscreen_mfa141
0.052000004
vioscreen_mfa161
1.67849305
vioscreen_mfa181
62.17380137
vioscreen_mfa201
0.450767078
vioscreen_mfa221
0.03117808
vioscreen_mfatot
64.67704944
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
16.85087489
vioscreen_nccglbr
82.97184825
vioscreen_nccglgr
58.03967252
vioscreen_niacin
16.54830372
vioscreen_niacineq
26.12260006
vioscreen_nitrogen
8.710411762
vioscreen_non_fried_fish_servings
0.8605799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.289890237
vioscreen_oxalic
259.78846319999997
vioscreen_oxalicm
266.02840330000004
vioscreen_pantothe
4.0129869430000005
vioscreen_pectins
3.9398357230000003
vioscreen_pfa182
16.57964469
vioscreen_pfa183
1.160054413
vioscreen_pfa184
0.007643835999999999
vioscreen_pfa204
0.064684933
vioscreen_pfa205
0.037479456
vioscreen_pfa225
0.013643836000000001
vioscreen_pfa226
0.071287667
vioscreen_pfatot
17.98704249
vioscreen_phenylal
2.32523277
vioscreen_phosphor
839.7113014
vioscreen_phytic
560.0492295
vioscreen_pinitol
0.018657534
vioscreen_potass
2482.5542809999997
vioscreen_procdate
10/28/15
vioscreen_proline
3.223643515
vioscreen_protanim
26.83939694
vioscreen_protein
52.81466182
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.97085028
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
108.0
vioscreen_retinol
96.48818493
vioscreen_rgrain
1.897753405
vioscreen_ribofla
1.0519726059999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.5597
vioscreen_satoco
0.0
vioscreen_selenium
71.83389876
vioscreen_serine
2.464274033
vioscreen_sfa100
0.140602739
vioscreen_sfa120
0.190465744
vioscreen_sfa140
0.890684948
vioscreen_sfa160
15.3980549
vioscreen_sfa170
0.054904112000000005
vioscreen_sfa180
5.060931815
vioscreen_sfa200
0.419314951
vioscreen_sfa220
0.42427401600000003
vioscreen_sfa40
0.196794505
vioscreen_sfa60
0.07117808099999999
vioscreen_sfa80
0.059863015
vioscreen_sfatot
23.20364405
vioscreen_sodium
2394.96661
vioscreen_sorbitol
0.03764384
vioscreen_srvid
20654.0
vioscreen_starch
46.26815604
vioscreen_started
9/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.14600011
vioscreen_sweet_servings
0.59726
vioscreen_tagatose
4.075013712
vioscreen_tfa161t
0.029068492
vioscreen_tfa181t
1.086219181
vioscreen_tfa182t
0.31895889899999996
vioscreen_tgrain
2.042959051
vioscreen_thiamin
0.98326023
vioscreen_threonin
1.923862907
vioscreen_time
22.0
vioscreen_totaltfa
1.434082198
vioscreen_totcla
0.052027402
vioscreen_totfolat
317.21847169999995
vioscreen_totsugar
50.18438035
vioscreen_tryptoph
0.5750411360000001
vioscreen_tyrosine
1.776273879
vioscreen_user_id
20654.0
vioscreen_v_drkgr
0.358602738
vioscreen_v_orange
0.12953424300000002
vioscreen_v_other
0.661178129
vioscreen_v_potato
0.386356176
vioscreen_v_starcy
0.096876714
vioscreen_v_tomato
0.695808223
vioscreen_v_total
2.328356265
vioscreen_valine
2.567424617
vioscreen_veg5_day
4.9
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
8404.805479
vioscreen_vita_rae
500.68125
vioscreen_vita_re
904.8711473
vioscreen_vitb12
2.514630211
vioscreen_vitb6
1.6579726959999999
vioscreen_vitc
95.99491652
vioscreen_vitd
1.626164685
vioscreen_vitd2
0.002082192
vioscreen_vitd3
1.6241647380000002
vioscreen_vitd_iu
65.04658738
vioscreen_vite_iu
25.15854559
vioscreen_vitk
184.0341396
vioscreen_water
2307.039384
vioscreen_weight
Not provided
vioscreen_wgrain
0.14523287199999999
vioscreen_whole_grain_servings
0.14470999999999998
vioscreen_xylitol
0.015671234
vioscreen_zinc
7.560164945
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
74.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily