American Gut Project; 10317.000023881
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633427
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023881
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23881
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
18.3
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-31
collection month
May
collection season
Spring
collection time
09:25
collection_timestamp
2015-05-31 09:25
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southwest
elevation
916.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
afb6ba1ae412fe830f06d51ecd194a7de442ffb531897301b9542a8d70164b3a49c3747f6501376d479feb1f308782069f5d500cbd6ae099c5018901e2fd089d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
32.3
level_of_education
Bachelor's degree
liver_disease
Diagnosed by a medical professional (doctor, physician assistant)
livingwith
Yes
longitude
-110.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000023881
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AZ
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
fb292ff06a4b03ab
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.0859726159999998
vioscreen_a_cal
114.3356164
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.402054795
vioscreen_addsugar
16.03720569
vioscreen_adsugtot
14.98534354
vioscreen_age
215.0
vioscreen_alanine
2.523945179
vioscreen_alcohol
15.49304099
vioscreen_alcohol_servings
1.08597
vioscreen_alphacar
186.92416519999998
vioscreen_alphtoce
14.77466021
vioscreen_alphtoco
13.81885033
vioscreen_arginine
3.139863147
vioscreen_ash
18.89975519
vioscreen_aspartam
0.0
vioscreen_aspartic
5.037095997
vioscreen_avcarb
105.53914809999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
12424.27534
vioscreen_betacryp
78.31059503
vioscreen_betaine
127.81266049999999
vioscreen_betatoco
0.40424658399999996
vioscreen_biochana
0.003287671
vioscreen_bmi
Not provided
vioscreen_caffeine
458.61618150000004
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
1.49611
vioscreen_calcium_servings
3.38466
vioscreen_calories
1688.6818489999998
vioscreen_carbo
128.5328874
vioscreen_cholest
224.7586687
vioscreen_choline
270.54235869999997
vioscreen_clac9t11
0.161150653
vioscreen_clat10c12
0.031643836
vioscreen_copper
0.981041059
vioscreen_coumest
0.358657544
vioscreen_cystine
0.652958951
vioscreen_d_cheese
0.935917852
vioscreen_d_milk
0.48898629
vioscreen_d_tot_soym
1.496109636
vioscreen_d_total
1.496109636
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.44690409600000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.451452135
vioscreen_discfat_oil
41.48460242
vioscreen_discfat_sol
44.50783658
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.505945242
vioscreen_f_nj_citmlb
0.182328755
vioscreen_f_nj_other
0.226958894
vioscreen_f_nj_total
0.40928762799999996
vioscreen_f_other
0.226958894
vioscreen_f_total
0.7329041359999999
vioscreen_fat
99.50010702
vioscreen_fiber
22.99402825
vioscreen_fibh2o
8.560629816
vioscreen_fibinso
14.48879495
vioscreen_finished
5/31/15
vioscreen_fish_servings
0.65885
vioscreen_fol_deqv
320.6827055
vioscreen_fol_nat
281.6675514
vioscreen_fol_syn
22.95846533
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.9
vioscreen_frtsumm
1.5
vioscreen_fructose
8.193014903
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.209479512
vioscreen_g_total
3.2929316269999998
vioscreen_g_whl
2.083397267
vioscreen_galactos
0.155315065
vioscreen_gammtoco
7.81799885
vioscreen_gender
false
vioscreen_genistn
0.24060271800000002
vioscreen_glac
48.70528146
vioscreen_gltc
54.42536922
vioscreen_glucose
8.482164357
vioscreen_glutamic
10.66402772
vioscreen_glycine
2.23112308
vioscreen_glycitn
0.035753425
vioscreen_grams
2387.7027399999997
vioscreen_hei2010_dairy
6.8
vioscreen_hei2010_empty_calories
14.8
vioscreen_hei2010_fatty_acids
3.5
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.0
vioscreen_hei2010_whole_grains
8.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
9.0
vioscreen_hei_milk
6.8
vioscreen_hei_non_juice_frt
3.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
61.7
vioscreen_hei_sodium
2.1
vioscreen_hei_sol_fat_alc_add_sug
10.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.1
vioscreen_height
Not provided
vioscreen_histidin
1.5213699969999999
vioscreen_inositol
0.163616452
vioscreen_iron
8.581232609
vioscreen_isoleuc
2.504027317
vioscreen_isomalt
0.0
vioscreen_joules
7065.443836
vioscreen_juice_servings
0.6472600000000001
vioscreen_lactitol
0.0
vioscreen_lactose
8.368547999
vioscreen_legumes
0.0
vioscreen_leucine
4.31063015
vioscreen_line_gi
286.7347603
vioscreen_low_fat_dairy_serving
0.49877
vioscreen_lutzeax
16672.771230000002
vioscreen_lycopene
2743.8897260000003
vioscreen_lysine
3.698273625
vioscreen_m_egg
0.290301388
vioscreen_m_fish_hi
0.18142466100000001
vioscreen_m_fish_lo
0.19405479999999997
vioscreen_m_frank
0.27452054
vioscreen_m_meat
1.089808216
vioscreen_m_mpf
2.3230684459999997
vioscreen_m_nutsd
1.160547962
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5832602720000001
vioscreen_m_soy
0.007205479
vioscreen_magnes
307.90044950000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.059753418
vioscreen_mangan
4.044930905
vioscreen_mannitol
0.163424651
vioscreen_methhis3
8.671369327999999
vioscreen_methion
1.211342506
vioscreen_mfa141
0.12145206
vioscreen_mfa161
1.3012601670000001
vioscreen_mfa181
37.29646832
vioscreen_mfa201
0.360767103
vioscreen_mfa221
0.053041097999999995
vioscreen_mfatot
39.38824379
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
13.81885033
vioscreen_nccglbr
79.54234268
vioscreen_nccglgr
55.63909461
vioscreen_niacin
14.39986355
vioscreen_niacineq
24.82024294
vioscreen_nitrogen
9.290958101000001
vioscreen_non_fried_fish_servings
0.65885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.706794634
vioscreen_oxalic
467.5066353
vioscreen_oxalicm
509.6407534
vioscreen_pantothe
5.929945018
vioscreen_pectins
3.365068828
vioscreen_pfa182
16.42156063
vioscreen_pfa183
1.5738630740000001
vioscreen_pfa184
0.009315067
vioscreen_pfa204
0.079287667
vioscreen_pfa205
0.035315072
vioscreen_pfa225
0.020164384
vioscreen_pfa226
0.068493151
vioscreen_pfatot
18.27578125
vioscreen_phenylal
2.502219004
vioscreen_phosphor
1049.732277
vioscreen_phytic
663.3555651
vioscreen_pinitol
0.003561644
vioscreen_potass
2658.936301
vioscreen_procdate
10/28/15
vioscreen_proline
3.74725994
vioscreen_protanim
35.01693065
vioscreen_protein
57.12260274
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.10539651
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
418.0
vioscreen_retinol
398.46416949999997
vioscreen_rgrain
0.48358902600000003
vioscreen_ribofla
1.992246529
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.12795
vioscreen_satoco
0.0
vioscreen_selenium
82.46553403
vioscreen_serine
2.6478356769999998
vioscreen_sfa100
1.009451921
vioscreen_sfa120
1.070301296
vioscreen_sfa140
3.7504932980000003
vioscreen_sfa160
17.98660504
vioscreen_sfa170
0.206630111
vioscreen_sfa180
7.3810132170000005
vioscreen_sfa200
0.271917808
vioscreen_sfa220
0.238904122
vioscreen_sfa40
1.233041173
vioscreen_sfa60
0.71983559
vioscreen_sfa80
0.459835648
vioscreen_sfatot
34.78345462
vioscreen_sodium
2976.216438
vioscreen_sorbitol
0.104191798
vioscreen_srvid
18790.0
vioscreen_starch
48.08684718
vioscreen_started
5/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.22284889
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
2.067725947
vioscreen_tfa161t
0.065726027
vioscreen_tfa181t
1.483314995
vioscreen_tfa182t
0.429068537
vioscreen_tgrain
3.43076707
vioscreen_thiamin
0.960493198
vioscreen_threonin
2.07813704
vioscreen_time
40.0
vioscreen_totaltfa
2.030136819
vioscreen_totcla
0.192904078
vioscreen_totfolat
304.6260274
vioscreen_totsugar
45.38687928
vioscreen_tryptoph
0.6266849879999999
vioscreen_tyrosine
2.051178229
vioscreen_user_id
18790.0
vioscreen_v_drkgr
1.217150628
vioscreen_v_orange
0.190493147
vioscreen_v_other
0.717479465
vioscreen_v_potato
0.156739724
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.254328772
vioscreen_v_total
2.536328961
vioscreen_valine
2.8852050780000003
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.1
vioscreen_visit
1.0
vioscreen_vita_iu
22254.54247
vioscreen_vita_rae
1444.872774
vioscreen_vita_re
2491.280137
vioscreen_vitb12
2.4165751419999997
vioscreen_vitb6
1.323726121
vioscreen_vitc
114.6940176
vioscreen_vitd
4.844246642
vioscreen_vitd2
0.0
vioscreen_vitd3
4.844246642
vioscreen_vitd_iu
193.7698657
vioscreen_vite_iu
20.56199968
vioscreen_vitk
774.4075342
vioscreen_water
2077.575856
vioscreen_weight
Not provided
vioscreen_wgrain
2.9471509119999997
vioscreen_whole_grain_servings
2.0834
vioscreen_xylitol
0.01950685
vioscreen_zinc
7.778959091
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
49.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)