American Gut Project; 10317.000012905
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632347
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000012905
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
31.0
age_corrected
31.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000012905
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1984.0
bmi
21.8
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-18
collection month
January
collection season
Winter
collection time
09:05
collection_timestamp
2015-01-18 09:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Mideast
elevation
380.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
45eae8b8c2983db7f9d3f1c1400ab5390402d1c8484ff44b6feaaf3e8e5742bc11b4f2a2e14c215b9d9ad545df6875f9a40fce0c46c42df308572654d2476cb7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-77.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not sure
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000012905
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
ca0316079c5c7ef9
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.586465747
vioscreen_a_cal
72.49188784
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.939589576
vioscreen_addsugar
31.58421982
vioscreen_adsugtot
28.50216182
vioscreen_age
215.0
vioscreen_alanine
3.2192058410000004
vioscreen_alcohol
8.650492963
vioscreen_alcohol_servings
0.5864699999999999
vioscreen_alphacar
1882.94863
vioscreen_alphtoce
7.484055945
vioscreen_alphtoco
6.8634263970000005
vioscreen_arginine
3.68282153
vioscreen_ash
13.91545377
vioscreen_aspartam
0.0
vioscreen_aspartic
5.8564098620000005
vioscreen_avcarb
129.7894799
vioscreen_bcodeid
Not provided
vioscreen_betacar
8781.167123000001
vioscreen_betacryp
77.5062714
vioscreen_betaine
77.60354773
vioscreen_betatoco
0.20175342300000002
vioscreen_biochana
0.008273972
vioscreen_bmi
Not provided
vioscreen_caffeine
167.65338180000003
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
1.04132
vioscreen_calcium_servings
2.09734
vioscreen_calories
1343.411815
vioscreen_carbo
146.80846530000002
vioscreen_cholest
209.8692423
vioscreen_choline
286.1524615
vioscreen_clac9t11
0.054465762
vioscreen_clat10c12
0.012
vioscreen_copper
0.94304124
vioscreen_coumest
0.114136986
vioscreen_cystine
0.860876883
vioscreen_d_cheese
0.36761641799999994
vioscreen_d_milk
0.298219174
vioscreen_d_tot_soym
1.041315115
vioscreen_d_total
1.041315115
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.152000009
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.0482738759999999
vioscreen_discfat_oil
18.31161708
vioscreen_discfat_sol
21.0018354
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00005479999999999999
vioscreen_f_citmlb
0.302767087
vioscreen_f_nj_citmlb
0.30117806199999997
vioscreen_f_nj_other
0.11745205199999999
vioscreen_f_nj_total
0.41865752799999995
vioscreen_f_other
0.167041099
vioscreen_f_total
0.46983559
vioscreen_fat
51.33102526
vioscreen_fiber
17.01156357
vioscreen_fibh2o
5.748382652
vioscreen_fibinso
11.30312366
vioscreen_finished
1/18/15
vioscreen_fish_servings
0.54115
vioscreen_fol_deqv
284.7789598
vioscreen_fol_nat
192.4016053
vioscreen_fol_syn
54.30093108
vioscreen_formontn
0.002383562
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.6
vioscreen_frtsumm
0.9
vioscreen_fructose
7.046959948
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.576027564
vioscreen_g_total
3.931150003
vioscreen_g_whl
1.3551781219999999
vioscreen_galactos
0.60747944
vioscreen_gammtoco
5.297288367
vioscreen_gender
false
vioscreen_genistn
0.123890414
vioscreen_glac
61.53189212
vioscreen_gltc
68.30703659999999
vioscreen_glucose
7.65830145
vioscreen_glutamic
11.68507063
vioscreen_glycine
2.812931761
vioscreen_glycitn
0.017178082
vioscreen_grams
2118.8960620000003
vioscreen_hei2010_dairy
6.0
vioscreen_hei2010_empty_calories
17.6
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
2.2
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.5
vioscreen_hei2010_score
74.1
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
3.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.9
vioscreen_hei2010_whole_grains
6.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.2
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.0
vioscreen_hei_non_juice_frt
3.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.7
vioscreen_hei_score
74.2
vioscreen_hei_sodium
2.5
vioscreen_hei_sol_fat_alc_add_sug
14.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
1.7656711530000002
vioscreen_inositol
0.074575356
vioscreen_iron
9.105068092
vioscreen_isoleuc
2.9848763239999996
vioscreen_isomalt
0.0
vioscreen_joules
5620.835274
vioscreen_juice_servings
0.10232999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
9.55991746
vioscreen_legumes
0.024356162999999997
vioscreen_leucine
4.996985699
vioscreen_line_gi
291.8722603
vioscreen_low_fat_dairy_serving
0.58929
vioscreen_lutzeax
3862.0893840000003
vioscreen_lycopene
4092.4325340000005
vioscreen_lysine
4.5815075180000004
vioscreen_m_egg
0.545397239
vioscreen_m_fish_hi
0.079013699
vioscreen_m_fish_lo
0.229342463
vioscreen_m_frank
0.24895889100000002
vioscreen_m_meat
1.048109582
vioscreen_m_mpf
3.710301397
vioscreen_m_nutsd
0.697232892
vioscreen_m_organ
0.0
vioscreen_m_poult
2.104876625
vioscreen_m_soy
0.001835616
vioscreen_magnes
253.25922519999997
vioscreen_maltitol
0.0
vioscreen_maltose
2.725260361
vioscreen_mangan
3.2392875780000003
vioscreen_mannitol
0.182684932
vioscreen_methhis3
15.55849342
vioscreen_methion
1.5412331780000001
vioscreen_mfa141
0.050520549000000005
vioscreen_mfa161
0.8392602370000001
vioscreen_mfa181
20.27687554
vioscreen_mfa201
0.176876747
vioscreen_mfa221
0.007561643000000001
vioscreen_mfatot
21.58476964
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
6.8634263970000005
vioscreen_nccglbr
99.01202911
vioscreen_nccglgr
69.26288527
vioscreen_niacin
16.37189239
vioscreen_niacineq
27.97893301
vioscreen_nitrogen
10.37125896
vioscreen_non_fried_fish_servings
0.54115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.733753445
vioscreen_oxalic
229.1357449
vioscreen_oxalicm
226.3541952
vioscreen_pantothe
4.4348766589999995
vioscreen_pectins
2.65876699
vioscreen_pfa182
8.181917541
vioscreen_pfa183
0.646465772
vioscreen_pfa184
0.001287671
vioscreen_pfa204
0.148109582
vioscreen_pfa205
0.013726028000000001
vioscreen_pfa225
0.021890412
vioscreen_pfa226
0.050958905
vioscreen_pfatot
9.136848512
vioscreen_phenylal
2.837561202
vioscreen_phosphor
1003.885274
vioscreen_phytic
513.9021404
vioscreen_pinitol
0.0052602740000000005
vioscreen_potass
2209.991096
vioscreen_procdate
10/28/15
vioscreen_proline
3.83923273
vioscreen_protanim
45.22747753
vioscreen_protein
63.978628
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.74468509
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
610.0
vioscreen_retinol
161.40922519999998
vioscreen_rgrain
2.430273939
vioscreen_ribofla
1.417698523
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8347700000000001
vioscreen_satoco
0.0
vioscreen_selenium
85.36078767
vioscreen_serine
2.967342345
vioscreen_sfa100
0.25068497300000003
vioscreen_sfa120
0.50821922
vioscreen_sfa140
1.228191971
vioscreen_sfa160
8.965944724
vioscreen_sfa170
0.06383562
vioscreen_sfa180
4.003478837
vioscreen_sfa200
0.119041108
vioscreen_sfa220
0.12060273099999999
vioscreen_sfa40
0.29495891399999996
vioscreen_sfa60
0.135780826
vioscreen_sfa80
0.134109612
vioscreen_sfatot
16.11759017
vioscreen_sodium
2315.891267
vioscreen_sorbitol
0.151041099
vioscreen_srvid
16922.0
vioscreen_starch
59.10970676
vioscreen_started
1/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.85756368
vioscreen_sweet_servings
0.61793
vioscreen_tagatose
4.35452028
vioscreen_tfa161t
0.028082193999999998
vioscreen_tfa181t
0.985260093
vioscreen_tfa182t
0.25613700100000003
vioscreen_tgrain
4.14095877
vioscreen_thiamin
0.995917835
vioscreen_threonin
2.543177942
vioscreen_time
19.0
vioscreen_totaltfa
1.279342526
vioscreen_totcla
0.067013696
vioscreen_totfolat
246.7026327
vioscreen_totsugar
57.79444028
vioscreen_tryptoph
0.696520536
vioscreen_tyrosine
2.289178049
vioscreen_user_id
16922.0
vioscreen_v_drkgr
0.27758904
vioscreen_v_orange
0.538383588
vioscreen_v_other
0.576000057
vioscreen_v_potato
0.12378082300000001
vioscreen_v_starcy
0.194684925
vioscreen_v_tomato
0.162684924
vioscreen_v_total
1.87312296
vioscreen_valine
3.401945098
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.7
vioscreen_visit
1.0
vioscreen_vita_iu
16806.621919999998
vioscreen_vita_rae
974.8593322
vioscreen_vita_re
1788.309075
vioscreen_vitb12
2.599479278
vioscreen_vitb6
1.294192129
vioscreen_vitc
63.54154003
vioscreen_vitd
2.33616425
vioscreen_vitd2
0.0013150689999999999
vioscreen_vitd3
2.334849068
vioscreen_vitd_iu
93.44656999
vioscreen_vite_iu
10.22635715
vioscreen_vitk
135.3782855
vioscreen_water
1854.867637
vioscreen_weight
Not provided
vioscreen_wgrain
1.710712255
vioscreen_whole_grain_servings
1.3551799999999998
vioscreen_xylitol
0.016164386
vioscreen_zinc
8.555561724
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)