American Gut Project; 10317.000027908
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633240
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027908
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27908
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1969.0
bmi
26.5
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-05-20
collection month
May
collection season
Spring
collection time
09:15
collection_timestamp
2015-05-20 09:15
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
1902.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Daily
homecooked_meals_frequency
Daily
host common name
human
host subject id
96e472a626856d6e5210804a6d9f4dd82d8bbaf38d893298e22ec0142ac68a1bc17a15289b23fc31abdda2b0f0f386ed360efbf964fafeb0fb707072fe0cfac9
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.2
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-119.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000027908
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NV
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
87aafc4bde839518
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.26983559
vioscreen_a_cal
362.31665239999995
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.56879448
vioscreen_addsugar
10.75531357
vioscreen_adsugtot
8.762026434
vioscreen_age
215.0
vioscreen_alanine
5.685040534
vioscreen_alcohol
48.30265946
vioscreen_alcohol_servings
3.2698400000000003
vioscreen_alphacar
1162.667123
vioscreen_alphtoce
12.20202536
vioscreen_alphtoco
11.17416457
vioscreen_arginine
6.410356913999999
vioscreen_ash
25.94235873
vioscreen_aspartam
0.0
vioscreen_aspartic
9.373946516
vioscreen_avcarb
57.38476563
vioscreen_bcodeid
Not provided
vioscreen_betacar
8941.013014
vioscreen_betacryp
49.55307149
vioscreen_betaine
71.12023224
vioscreen_betatoco
0.194849302
vioscreen_biochana
0.004410959
vioscreen_bmi
Not provided
vioscreen_caffeine
243.41742290000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.008
vioscreen_calcium_servings
1.2882200000000001
vioscreen_calories
1975.184418
vioscreen_carbo
80.01607984
vioscreen_cholest
304.6142337
vioscreen_choline
397.8320205
vioscreen_clac9t11
0.096493154
vioscreen_clat10c12
0.025643835
vioscreen_copper
1.245013595
vioscreen_coumest
0.17739726
vioscreen_cystine
1.165726001
vioscreen_d_cheese
0.002684932
vioscreen_d_milk
0.005205479
vioscreen_d_tot_soym
0.008
vioscreen_d_total
0.008
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.322684928
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.3568218909999998
vioscreen_discfat_oil
32.25996896
vioscreen_discfat_sol
31.7689908
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.450273948
vioscreen_f_nj_citmlb
0.43104110100000004
vioscreen_f_nj_other
0.907917848
vioscreen_f_nj_total
1.338958991
vioscreen_f_other
0.907917848
vioscreen_f_total
1.3581917540000001
vioscreen_fat
107.6813249
vioscreen_fiber
22.63186002
vioscreen_fibh2o
7.8559730839999995
vioscreen_fibinso
14.86473941
vioscreen_finished
5/14/15
vioscreen_fish_servings
3.67769
vioscreen_fol_deqv
358.97675510000005
vioscreen_fol_nat
346.8415668
vioscreen_fol_syn
7.12712302
vioscreen_formontn
0.000027399999999999995
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.12877
vioscreen_frt5_day
1.0
vioscreen_frtsumm
2.7
vioscreen_fructose
9.236356218
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.36627397899999997
vioscreen_g_total
0.36627397899999997
vioscreen_g_whl
0.0
vioscreen_galactos
0.166438356
vioscreen_gammtoco
9.371753932999999
vioscreen_gender
false
vioscreen_genistn
0.27520547100000003
vioscreen_glac
10.27301343
vioscreen_gltc
11.833287400000001
vioscreen_glucose
11.29178082
vioscreen_glutamic
15.29098619
vioscreen_glycine
5.24649307
vioscreen_glycitn
0.037835618
vioscreen_grams
3455.4335619999997
vioscreen_hei2010_dairy
0.0
vioscreen_hei2010_empty_calories
16.1
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.3
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.0
vioscreen_hei_score
56.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
10.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.91950717
vioscreen_inositol
0.175780832
vioscreen_iron
11.00142404
vioscreen_isoleuc
4.440410958999999
vioscreen_isomalt
0.0
vioscreen_joules
8264.168493000001
vioscreen_juice_servings
0.03847
vioscreen_lactitol
0.0
vioscreen_lactose
0.455506876
vioscreen_legumes
0.011917808
vioscreen_leucine
7.428629334
vioscreen_line_gi
69.08608733
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
9008.088356
vioscreen_lycopene
840.9333903999999
vioscreen_lysine
8.048796019
vioscreen_m_egg
0.027452056000000002
vioscreen_m_fish_hi
1.133726021
vioscreen_m_fish_lo
0.9621918140000001
vioscreen_m_frank
5.109260622
vioscreen_m_meat
1.332849288
vioscreen_m_mpf
12.58380913
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
4.045917501
vioscreen_m_soy
0.000739726
vioscreen_magnes
287.4106378
vioscreen_maltitol
0.0
vioscreen_maltose
0.39216438200000003
vioscreen_mangan
2.281753498
vioscreen_mannitol
0.210383564
vioscreen_methhis3
43.03479773
vioscreen_methion
2.504630144
vioscreen_mfa141
0.054739725
vioscreen_mfa161
2.8580546339999997
vioscreen_mfa181
47.20219392
vioscreen_mfa201
0.615095917
vioscreen_mfa221
0.186849307
vioscreen_mfatot
51.05382063
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.17416457
vioscreen_nccglbr
44.54862746
vioscreen_nccglgr
31.16435413
vioscreen_niacin
30.46022581
vioscreen_niacineq
48.40684932
vioscreen_nitrogen
15.75199995
vioscreen_non_fried_fish_servings
3.49442
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.9238629069999997
vioscreen_oxalic
425.92795379999995
vioscreen_oxalicm
396.0234589
vioscreen_pantothe
7.3702195260000005
vioscreen_pectins
5.15975392
vioscreen_pfa182
18.61230335
vioscreen_pfa183
2.28627428
vioscreen_pfa184
0.043808219
vioscreen_pfa204
0.300931497
vioscreen_pfa205
0.170547945
vioscreen_pfa225
0.081178085
vioscreen_pfa226
0.34465750100000003
vioscreen_pfatot
22.11260301
vioscreen_phenylal
3.8625762519999998
vioscreen_phosphor
1146.87149
vioscreen_phytic
288.3740582
vioscreen_pinitol
0.0013150689999999999
vioscreen_potass
3467.931164
vioscreen_procdate
10/28/15
vioscreen_proline
4.298986649
vioscreen_protanim
85.66277825
vioscreen_protein
98.21666309999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
12.55567209
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
448.0
vioscreen_retinol
115.3395976
vioscreen_rgrain
0.417095905
vioscreen_ribofla
1.7506300830000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.22879
vioscreen_satoco
0.0
vioscreen_selenium
113.19370719999999
vioscreen_serine
3.9006029939999998
vioscreen_sfa100
0.045999992
vioscreen_sfa120
0.077616438
vioscreen_sfa140
0.832410922
vioscreen_sfa160
16.88046474
vioscreen_sfa170
0.10643835199999999
vioscreen_sfa180
6.330356377999999
vioscreen_sfa200
0.187643809
vioscreen_sfa220
0.08775343199999999
vioscreen_sfa40
0.005013698
vioscreen_sfa60
0.001972603
vioscreen_sfa80
0.0032054790000000002
vioscreen_sfatot
24.6720275
vioscreen_sodium
4782.342466
vioscreen_sorbitol
0.330958912
vioscreen_srvid
18698.0
vioscreen_starch
9.797068975
vioscreen_started
5/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.439423693999999
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.000767123
vioscreen_tfa161t
0.075890413
vioscreen_tfa181t
1.249479445
vioscreen_tfa182t
0.23276712100000002
vioscreen_tgrain
0.417095905
vioscreen_thiamin
1.176219031
vioscreen_threonin
4.13890431
vioscreen_time
26.0
vioscreen_totaltfa
1.5838082930000001
vioscreen_totcla
0.12263013199999999
vioscreen_totfolat
353.96866439999997
vioscreen_totsugar
29.58786119
vioscreen_tryptoph
1.079013605
vioscreen_tyrosine
3.2021644910000004
vioscreen_user_id
18698.0
vioscreen_v_drkgr
1.11863002
vioscreen_v_orange
0.27136985
vioscreen_v_other
1.5733970330000002
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.150356157
vioscreen_v_total
3.113780902
vioscreen_valine
4.709589041
vioscreen_veg5_day
8.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.2
vioscreen_visit
1.0
vioscreen_vita_iu
16297.15205
vioscreen_vita_rae
910.9363014
vioscreen_vita_re
1706.527568
vioscreen_vitb12
5.247808085
vioscreen_vitb6
2.5759173669999997
vioscreen_vitc
132.2729131
vioscreen_vitd
6.78501311
vioscreen_vitd2
0.001178082
vioscreen_vitd3
6.783807122000001
vioscreen_vitd_iu
271.4005244
vioscreen_vite_iu
16.64292996
vioscreen_vitk
434.395762
vioscreen_water
3107.0996579999996
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.071863012
vioscreen_zinc
11.98411012
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
86.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never