American Gut Project; 10317.000030125
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634130
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030125
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030125
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1970.0
bmi
22.48
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/08/2015
collection month
September
collection season
Fall
collection time
07:15
collection_timestamp
2015-09-08 07:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
31.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
155.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
070e4cbb04527500577f5a1faa8e087ed4eada4073976880f4ddff2a166409fc9698511cf61c9648544aadadcb5c194f78a6d649306efcd41b22c15fee5be35e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030125
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b7e3e3a5817b11c5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.022958917
vioscreen_a_cal
126.55191570000001
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.532685412999999
vioscreen_addsugar
34.06112479
vioscreen_adsugtot
31.31526113
vioscreen_age
215.0
vioscreen_alanine
3.3547674310000004
vioscreen_alcohol
15.86756073
vioscreen_alcohol_servings
1.02296
vioscreen_alphacar
2653.905651
vioscreen_alphtoce
13.382277400000001
vioscreen_alphtoco
12.34145441
vioscreen_arginine
4.03002729
vioscreen_ash
23.92852098
vioscreen_aspartam
10.70342466
vioscreen_aspartic
7.282576386000001
vioscreen_avcarb
181.3859375
vioscreen_bcodeid
Not provided
vioscreen_betacar
13280.99315
vioscreen_betacryp
460.64580480000006
vioscreen_betaine
173.0325128
vioscreen_betatoco
0.371534165
vioscreen_biochana
0.017424658
vioscreen_bmi
Not provided
vioscreen_caffeine
392.7172517
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.8147900000000001
vioscreen_calcium_servings
3.4011
vioscreen_calories
1783.407534
vioscreen_carbo
214.58197769999998
vioscreen_cholest
232.4708262
vioscreen_choline
367.0519692
vioscreen_clac9t11
0.11216439
vioscreen_clat10c12
0.019808222
vioscreen_copper
1.808493084
vioscreen_coumest
0.226602737
vioscreen_cystine
0.869315035
vioscreen_d_cheese
0.866685005
vioscreen_d_milk
0.733178126
vioscreen_d_tot_soym
1.814794587
vioscreen_d_total
1.814794587
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
1.38120552
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.702493244
vioscreen_discfat_oil
15.10964255
vioscreen_discfat_sol
34.33446597
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00139726
vioscreen_f_citmlb
0.518410962
vioscreen_f_nj_citmlb
0.48016441
vioscreen_f_nj_other
0.870054815
vioscreen_f_nj_total
1.350219141
vioscreen_f_other
0.870054815
vioscreen_f_total
1.3884931169999999
vioscreen_fat
63.78700771
vioscreen_fiber
33.19166845
vioscreen_fibh2o
9.533314828
vioscreen_fibinso
23.68655019
vioscreen_finished
9/7/15
vioscreen_fish_servings
3.57942
vioscreen_fol_deqv
481.4869863
vioscreen_fol_nat
400.6400685
vioscreen_fol_syn
47.48501712
vioscreen_formontn
0.002410959
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.21918
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.8
vioscreen_fructose
20.47121014
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.481972389
vioscreen_g_total
4.384082366
vioscreen_g_whl
1.9021096430000002
vioscreen_galactos
0.557835535
vioscreen_gammtoco
8.776630726
vioscreen_gender
false
vioscreen_genistn
1.5030136319999998
vioscreen_glac
77.90621254
vioscreen_gltc
88.41132813
vioscreen_glucose
20.64654993
vioscreen_glutamic
15.02701199
vioscreen_glycine
2.800246816
vioscreen_glycitn
0.21186301899999999
vioscreen_grams
4015.791096
vioscreen_hei2010_dairy
7.8
vioscreen_hei2010_empty_calories
17.1
vioscreen_hei2010_fatty_acids
2.0
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
4.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.1
vioscreen_hei_sat_fat
5.2
vioscreen_hei_score
70.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
12.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.6
vioscreen_height
Not provided
vioscreen_histidin
1.8775067890000001
vioscreen_inositol
0.237753463
vioscreen_iron
12.71161574
vioscreen_isoleuc
3.2572048239999996
vioscreen_isomalt
0.0
vioscreen_joules
7461.776027
vioscreen_juice_servings
0.07658
vioscreen_lactitol
0.0
vioscreen_lactose
13.33715085
vioscreen_legumes
0.196410945
vioscreen_leucine
5.588191955
vioscreen_line_gi
427.99880139999993
vioscreen_low_fat_dairy_serving
0.2257
vioscreen_lutzeax
8827.480822
vioscreen_lycopene
13382.41644
vioscreen_lysine
4.844657668
vioscreen_m_egg
0.37104111799999995
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
1.282109592
vioscreen_m_frank
0.133369864
vioscreen_m_meat
0.190109587
vioscreen_m_mpf
2.983177708
vioscreen_m_nutsd
0.862986358
vioscreen_m_organ
0.0
vioscreen_m_poult
0.6198903960000001
vioscreen_m_soy
0.095178076
vioscreen_magnes
434.33351880000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.09030143
vioscreen_mangan
5.8447941189999995
vioscreen_mannitol
0.625506801
vioscreen_methhis3
9.610795029
vioscreen_methion
1.593671407
vioscreen_mfa141
0.072219185
vioscreen_mfa161
0.9686299359999999
vioscreen_mfa181
21.34788634
vioscreen_mfa201
0.283972586
vioscreen_mfa221
0.127671229
vioscreen_mfatot
22.9816433
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
12.34145441
vioscreen_nccglbr
136.456753
vioscreen_nccglgr
95.45539384
vioscreen_niacin
21.05200396
vioscreen_niacineq
35.97347763
vioscreen_nitrogen
12.24095944
vioscreen_non_fried_fish_servings
2.78538
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.590739713
vioscreen_oxalic
505.7383562
vioscreen_oxalicm
502.64417810000003
vioscreen_pantothe
6.5652049439999995
vioscreen_pectins
4.992766748999999
vioscreen_pfa182
9.384465967
vioscreen_pfa183
1.137287631
vioscreen_pfa184
0.030931507
vioscreen_pfa204
0.099095885
vioscreen_pfa205
0.12808219199999998
vioscreen_pfa225
0.044246574000000004
vioscreen_pfa226
0.25115070100000003
vioscreen_pfatot
11.16279498
vioscreen_phenylal
3.279424965
vioscreen_phosphor
1385.391096
vioscreen_phytic
765.3284247
vioscreen_pinitol
0.008958904
vioscreen_potass
4357.643151
vioscreen_procdate
10/28/15
vioscreen_proline
4.678109281
vioscreen_protanim
42.90202804
vioscreen_protein
75.45675835
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.55073309
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
110.0
vioscreen_retinol
324.3523973
vioscreen_rgrain
2.5270410830000003
vioscreen_ribofla
2.233944911
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.12715
vioscreen_satoco
0.0
vioscreen_selenium
107.63066140000001
vioscreen_serine
3.4250130430000003
vioscreen_sfa100
0.624054708
vioscreen_sfa120
0.8952876679999999
vioscreen_sfa140
2.622493211
vioscreen_sfa160
11.995230900000001
vioscreen_sfa170
0.110849313
vioscreen_sfa180
4.812739793
vioscreen_sfa200
0.139068478
vioscreen_sfa220
0.165013697
vioscreen_sfa40
0.780821918
vioscreen_sfa60
0.430794536
vioscreen_sfa80
0.331808179
vioscreen_sfatot
23.33117509
vioscreen_sodium
3847.1558219999997
vioscreen_sorbitol
0.874219084
vioscreen_srvid
20647.0
vioscreen_starch
71.16899079999999
vioscreen_started
9/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
35.64731646
vioscreen_sweet_servings
0.6173
vioscreen_tagatose
2.064821844
vioscreen_tfa161t
0.037424657
vioscreen_tfa181t
1.3877260809999998
vioscreen_tfa182t
0.28830137899999997
vioscreen_tgrain
4.220739913
vioscreen_thiamin
1.47813704
vioscreen_threonin
2.918739298
vioscreen_time
30.0
vioscreen_totaltfa
1.8016986169999998
vioscreen_totcla
0.132657529
vioscreen_totfolat
448.12491439999997
vioscreen_totsugar
93.66656678
vioscreen_tryptoph
0.8943835109999999
vioscreen_tyrosine
2.61093148
vioscreen_user_id
20647.0
vioscreen_v_drkgr
0.512794516
vioscreen_v_orange
0.5388219129999999
vioscreen_v_other
1.7258357640000002
vioscreen_v_potato
0.24172601600000002
vioscreen_v_starcy
0.319123297
vioscreen_v_tomato
1.6677537059999998
vioscreen_v_total
5.006054019
vioscreen_valine
3.7878625319999997
vioscreen_veg5_day
9.7
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
10.0
vioscreen_visit
1.0
vioscreen_vita_iu
25814.39178
vioscreen_vita_rae
1560.876712
vioscreen_vita_re
2797.39863
vioscreen_vitb12
4.3514795589999995
vioscreen_vitb6
2.1438906319999997
vioscreen_vitc
265.2979238
vioscreen_vitd
7.145451627000001
vioscreen_vitd2
0.0026301370000000003
vioscreen_vitd3
7.142876445
vioscreen_vitd_iu
285.8180651
vioscreen_vite_iu
18.38232823
vioscreen_vitk
344.5251498
vioscreen_water
3657.2688359999997
vioscreen_weight
Not provided
vioscreen_wgrain
1.693698664
vioscreen_whole_grain_servings
1.9021099999999997
vioscreen_xylitol
0.057589048
vioscreen_zinc
11.72312179
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)