10317.000026623; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632758
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:36Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026623
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26623
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1972.0
bmi
19.37
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-17
collection month
April
collection season
Spring
collection time
08:30
collection_timestamp
2015-04-17 08:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
274.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
56609e82e6dba690eb093dbb3a2e9cdd24f3b5bdc9a3f3caa4aaf16afb804d4aec9147ef2264f18b7d832ed622b2019fe69e7871ff8541916c0d35e0ddf4863e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
35.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-86.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026623
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TN
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
ded1ad7b6abb3499
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.131534252
vioscreen_a_cal
16.13613683
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.317781463999999
vioscreen_addsugar
21.68638565
vioscreen_adsugtot
19.02857582
vioscreen_age
215.0
vioscreen_alanine
3.763315028
vioscreen_alcohol
1.8354793180000002
vioscreen_alcohol_servings
0.13153
vioscreen_alphacar
5402.014725999999
vioscreen_alphtoce
22.54296072
vioscreen_alphtoco
20.6596158
vioscreen_arginine
4.827752435
vioscreen_ash
32.31603168
vioscreen_aspartam
0.0
vioscreen_aspartic
8.151727713
vioscreen_avcarb
242.09871580000004
vioscreen_bcodeid
Not provided
vioscreen_betacar
39107.66027
vioscreen_betacryp
226.2672945
vioscreen_betaine
160.2668343
vioscreen_betatoco
0.35632876
vioscreen_biochana
0.070602741
vioscreen_bmi
Not provided
vioscreen_caffeine
149.30821919999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.5575100000000001
vioscreen_calcium_servings
3.8130699999999997
vioscreen_calories
2381.047945
vioscreen_carbo
302.6115154
vioscreen_cholest
305.95761989999994
vioscreen_choline
496.4095034
vioscreen_clac9t11
0.128301354
vioscreen_clat10c12
0.025452057
vioscreen_copper
2.616410932
vioscreen_coumest
0.032356166
vioscreen_cystine
1.0242741
vioscreen_d_cheese
0.473397284
vioscreen_d_milk
0.08408219300000001
vioscreen_d_tot_soym
0.5575068639999999
vioscreen_d_total
0.5575068639999999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.94323279
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.580657374
vioscreen_discfat_oil
47.30451627
vioscreen_discfat_sol
35.16320634
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000684932
vioscreen_f_citmlb
0.716383592
vioscreen_f_nj_citmlb
0.710054748
vioscreen_f_nj_other
1.8921918480000002
vioscreen_f_nj_total
2.602246428
vioscreen_f_other
1.8921918480000002
vioscreen_f_total
2.608575356
vioscreen_fat
105.32007709999999
vioscreen_fiber
60.51400899
vioscreen_fibh2o
13.20314908
vioscreen_fibinso
47.18416096
vioscreen_finished
4/6/15
vioscreen_fish_servings
0.34788
vioscreen_fol_deqv
789.4486301
vioscreen_fol_nat
710.9846318
vioscreen_fol_syn
46.14575128
vioscreen_formontn
0.013424656
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.2
vioscreen_fructose
27.54910103
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.465479853
vioscreen_g_total
5.33394558
vioscreen_g_whl
1.8684657269999998
vioscreen_galactos
0.248136985
vioscreen_gammtoco
17.06210938
vioscreen_gender
false
vioscreen_genistn
1.438164363
vioscreen_glac
109.68773540000001
vioscreen_gltc
129.6816781
vioscreen_glucose
25.14709172
vioscreen_glutamic
13.54350519
vioscreen_glycine
3.299261224
vioscreen_glycitn
0.21117806600000003
vioscreen_grams
4722.999658
vioscreen_hei2010_dairy
1.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.8
vioscreen_hei_score
73.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
1.9686030140000002
vioscreen_inositol
0.152054795
vioscreen_iron
22.4976723
vioscreen_isoleuc
3.4412601
vioscreen_isomalt
0.0
vioscreen_joules
9962.295890000001
vioscreen_juice_servings
0.01266
vioscreen_lactitol
0.0
vioscreen_lactose
1.293726004
vioscreen_legumes
1.17230141
vioscreen_leucine
5.719396805
vioscreen_line_gi
624.7847174999999
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
40327.09315
vioscreen_lycopene
13155.88904
vioscreen_lysine
4.769068386
vioscreen_m_egg
1.028493134
vioscreen_m_fish_hi
0.050794523
vioscreen_m_fish_lo
0.14742466099999998
vioscreen_m_frank
0.018273973
vioscreen_m_meat
0.7337808690000001
vioscreen_m_mpf
1.363068547
vioscreen_m_nutsd
0.563232882
vioscreen_m_organ
0.0
vioscreen_m_poult
0.41276713299999995
vioscreen_m_soy
0.010465754
vioscreen_magnes
602.3976455
vioscreen_maltitol
0.0
vioscreen_maltose
2.985314774
vioscreen_mangan
8.483837222
vioscreen_mannitol
1.01476708
vioscreen_methhis3
5.95715031
vioscreen_methion
1.3998903040000001
vioscreen_mfa141
0.060986302
vioscreen_mfa161
1.543479606
vioscreen_mfa181
40.25156518
vioscreen_mfa201
0.321561651
vioscreen_mfa221
0.042191785
vioscreen_mfatot
42.42819724
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
20.6596158
vioscreen_nccglbr
176.2808861
vioscreen_nccglgr
123.30032109999999
vioscreen_niacin
19.53575557
vioscreen_niacineq
35.1236997
vioscreen_nitrogen
12.65838506
vioscreen_non_fried_fish_servings
0.34788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.079835657
vioscreen_oxalic
1248.406164
vioscreen_oxalicm
1190.159075
vioscreen_pantothe
7.080520923
vioscreen_pectins
11.25517712
vioscreen_pfa182
20.51638752
vioscreen_pfa183
3.026109335
vioscreen_pfa184
0.001150685
vioscreen_pfa204
0.112328767
vioscreen_pfa205
0.009753425
vioscreen_pfa225
0.007369863000000001
vioscreen_pfa226
0.035808217999999996
vioscreen_pfatot
23.77578125
vioscreen_phenylal
3.631013217
vioscreen_phosphor
1464.370548
vioscreen_phytic
1310.5360449999998
vioscreen_pinitol
0.009589041999999999
vioscreen_potass
5471.891781
vioscreen_procdate
10/28/15
vioscreen_proline
4.0911507380000005
vioscreen_protanim
24.34583423
vioscreen_protein
78.30941246
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
53.96569991
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
496.0
vioscreen_retinol
298.97044089999997
vioscreen_rgrain
2.2171232880000002
vioscreen_ribofla
1.90487696
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.9979199999999997
vioscreen_satoco
0.0
vioscreen_selenium
94.28016909
vioscreen_serine
3.885890344
vioscreen_sfa100
0.659616423
vioscreen_sfa120
0.695890369
vioscreen_sfa140
2.490821483
vioscreen_sfa160
17.42188704
vioscreen_sfa170
0.181205457
vioscreen_sfa180
6.225945793999999
vioscreen_sfa200
0.251780826
vioscreen_sfa220
0.20386302399999998
vioscreen_sfa40
0.8467672270000001
vioscreen_sfa60
0.492794465
vioscreen_sfa80
0.308986277
vioscreen_sfatot
30.10786601
vioscreen_sodium
6918.7328769999995
vioscreen_sorbitol
0.887671233
vioscreen_srvid
18445.0
vioscreen_starch
124.35483729999999
vioscreen_started
4/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.84252194
vioscreen_sweet_servings
0.09487999999999999
vioscreen_tagatose
0.45643837299999995
vioscreen_tfa161t
0.03690411
vioscreen_tfa181t
1.342712319
vioscreen_tfa182t
0.327506894
vioscreen_tgrain
5.228630338
vioscreen_thiamin
1.609917293
vioscreen_threonin
3.089232395
vioscreen_time
24.0
vioscreen_totaltfa
1.720739746
vioscreen_totcla
0.15441094
vioscreen_totfolat
757.1303937999999
vioscreen_totsugar
87.50706871
vioscreen_tryptoph
0.9378904579999999
vioscreen_tyrosine
2.515945226
vioscreen_user_id
18445.0
vioscreen_v_drkgr
2.773068112
vioscreen_v_orange
1.3819451319999998
vioscreen_v_other
1.983287905
vioscreen_v_potato
0.22969862
vioscreen_v_starcy
0.17701370000000002
vioscreen_v_tomato
0.8412876909999999
vioscreen_v_total
7.386300701000001
vioscreen_valine
3.986301035
vioscreen_veg5_day
13.8
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
14.6
vioscreen_visit
1.0
vioscreen_vita_iu
70866.90959
vioscreen_vita_rae
3792.4582189999996
vioscreen_vita_re
7285.941096
vioscreen_vitb12
1.706383608
vioscreen_vitb6
2.9376715669999998
vioscreen_vitc
266.2016695
vioscreen_vitd
2.717041016
vioscreen_vitd2
0.0
vioscreen_vitd3
2.717041016
vioscreen_vitd_iu
108.6816406
vioscreen_vite_iu
30.80851884
vioscreen_vitk
1773.0571920000002
vioscreen_water
4218.187671
vioscreen_weight
Not provided
vioscreen_wgrain
3.01153414
vioscreen_whole_grain_servings
1.86847
vioscreen_xylitol
0.061178087
vioscreen_zinc
15.62665748
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never