American Gut Project; 10317.000030961
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634219
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030961
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030961
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
21.8
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-24
collection month
July
collection season
Summer
collection time
14:30
collection_timestamp
2015-07-24 14:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
1627.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
a4211cfb67f18fdc0a41f1a994755149a4caae04f3d7f66168288d0bdcf716785fc17aa6738e63bf7cd09dee50af5e2c6a9e05966222a9f7b9f853074d61965e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-111.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030961
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AZ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
9c1a0c73b0d9b6c6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.531589038
vioscreen_a_cal
72.98416631
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.135725466
vioscreen_addsugar
31.85076252
vioscreen_adsugtot
28.57438463
vioscreen_age
215.0
vioscreen_alanine
2.327068339
vioscreen_alcohol
7.820794761
vioscreen_alcohol_servings
0.53159
vioscreen_alphacar
1938.6422949999999
vioscreen_alphtoce
13.78876819
vioscreen_alphtoco
12.25103944
vioscreen_arginine
3.514356472
vioscreen_ash
21.79520816
vioscreen_aspartam
0.0
vioscreen_aspartic
5.936959546000001
vioscreen_avcarb
259.9734161
vioscreen_bcodeid
Not provided
vioscreen_betacar
14884.42055
vioscreen_betacryp
206.82238869999998
vioscreen_betaine
209.99122430000003
vioscreen_betatoco
0.535808239
vioscreen_biochana
0.035041092999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
2.93090419
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.13655
vioscreen_calcium_servings
2.13784
vioscreen_calories
1820.440582
vioscreen_carbo
304.4170377
vioscreen_cholest
17.04271324
vioscreen_choline
248.29372859999998
vioscreen_clac9t11
0.013150685
vioscreen_clat10c12
0.004164384
vioscreen_copper
2.2347402080000003
vioscreen_coumest
0.002356164
vioscreen_cystine
0.8883561640000001
vioscreen_d_cheese
0.094986296
vioscreen_d_milk
0.041561644
vioscreen_d_tot_soym
0.136547946
vioscreen_d_total
0.136547946
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.490328645
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.68986298
vioscreen_discfat_oil
20.134959600000002
vioscreen_discfat_sol
11.934112800000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001945205
vioscreen_f_citmlb
0.332054786
vioscreen_f_nj_citmlb
0.33104108
vioscreen_f_nj_other
1.1072328329999999
vioscreen_f_nj_total
1.4382738919999998
vioscreen_f_other
1.503123328
vioscreen_f_total
1.835178156
vioscreen_fat
44.95093108
vioscreen_fiber
44.44487639
vioscreen_fibh2o
11.95849074
vioscreen_fibinso
32.48512147
vioscreen_finished
7/23/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
569.3771832
vioscreen_fol_nat
412.6452911
vioscreen_fol_syn
92.17992295
vioscreen_formontn
0.0058356169999999995
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.5
vioscreen_frtsumm
3.7
vioscreen_fructose
33.38430811
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.229177982
vioscreen_g_total
7.7532059339999995
vioscreen_g_whl
5.524000361000001
vioscreen_galactos
0.174465765
vioscreen_gammtoco
13.08372619
vioscreen_gender
false
vioscreen_genistn
0.89046564
vioscreen_glac
129.415914
vioscreen_gltc
149.38747859999998
vioscreen_glucose
29.22142284
vioscreen_glutamic
11.22948015
vioscreen_glycine
2.354822112
vioscreen_glycitn
0.12413698
vioscreen_grams
3709.5739729999996
vioscreen_hei2010_dairy
0.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
79.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.2611505379999999
vioscreen_inositol
0.136739726
vioscreen_iron
19.41178029
vioscreen_isoleuc
2.075451995
vioscreen_isomalt
0.0
vioscreen_joules
7616.717123
vioscreen_juice_servings
0.79375
vioscreen_lactitol
0.0
vioscreen_lactose
0.6607397629999999
vioscreen_legumes
0.657424676
vioscreen_leucine
3.6915059130000003
vioscreen_line_gi
638.7047089
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
12351.302740000001
vioscreen_lycopene
12441.78493
vioscreen_lysine
2.6775616369999997
vioscreen_m_egg
0.004273972
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.18893150399999997
vioscreen_m_mpf
0.255890415
vioscreen_m_nutsd
1.8398904040000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.066958906
vioscreen_m_soy
0.062958908
vioscreen_magnes
511.2275257
vioscreen_maltitol
0.0
vioscreen_maltose
3.509205105
vioscreen_mangan
7.68575289
vioscreen_mannitol
0.548657603
vioscreen_methhis3
1.4282465690000001
vioscreen_methion
0.7928768629999999
vioscreen_mfa141
0.010958903
vioscreen_mfa161
0.21665756
vioscreen_mfa181
15.24575396
vioscreen_mfa201
0.18391780100000002
vioscreen_mfa221
0.006082191999999999
vioscreen_mfatot
15.74663153
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.25103944
vioscreen_nccglbr
207.3954195
vioscreen_nccglgr
145.067348
vioscreen_niacin
18.23197373
vioscreen_niacineq
29.22090379
vioscreen_nitrogen
9.53293156
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.297534012
vioscreen_oxalic
702.2131849
vioscreen_oxalicm
692.8335187999999
vioscreen_pantothe
4.574685293
vioscreen_pectins
6.635587677
vioscreen_pfa182
14.32188972
vioscreen_pfa183
1.292602539
vioscreen_pfa184
0.000383562
vioscreen_pfa204
0.007917809
vioscreen_pfa205
0.00279452
vioscreen_pfa225
0.001260274
vioscreen_pfa226
0.000438356
vioscreen_pfatot
15.65564266
vioscreen_phenylal
2.545834894
vioscreen_phosphor
1204.9013699999998
vioscreen_phytic
1441.7017119999998
vioscreen_pinitol
0.005917808
vioscreen_potass
3915.7921229999997
vioscreen_procdate
10/28/15
vioscreen_proline
2.945424872
vioscreen_protanim
4.207506823
vioscreen_protein
57.16862158
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
52.96659889
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
269.0
vioscreen_retinol
82.06299229999999
vioscreen_rgrain
2.356054855
vioscreen_ribofla
1.181835519
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.6350700000000002
vioscreen_satoco
0.0
vioscreen_selenium
93.09886558
vioscreen_serine
2.648493184
vioscreen_sfa100
0.052191784000000005
vioscreen_sfa120
0.099095885
vioscreen_sfa140
0.331561614
vioscreen_sfa160
6.085972282
vioscreen_sfa170
0.023643836
vioscreen_sfa180
2.227068339
vioscreen_sfa200
0.166904115
vioscreen_sfa220
0.2760548
vioscreen_sfa40
0.060438355
vioscreen_sfa60
0.022246575
vioscreen_sfa80
0.023068496
vioscreen_sfatot
9.629124304
vioscreen_sodium
3852.4294520000003
vioscreen_sorbitol
1.308273775
vioscreen_srvid
20213.0
vioscreen_starch
143.6206443
vioscreen_started
7/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.8635595
vioscreen_sweet_servings
0.5460699999999999
vioscreen_tagatose
0.238383547
vioscreen_tfa161t
0.008164384
vioscreen_tfa181t
0.450164377
vioscreen_tfa182t
0.093232884
vioscreen_tgrain
7.97975305
vioscreen_thiamin
1.6846303440000001
vioscreen_threonin
1.8503839359999998
vioscreen_time
27.0
vioscreen_totaltfa
0.603068522
vioscreen_totcla
0.017726028
vioscreen_totfolat
504.82517120000006
vioscreen_totsugar
93.29490582
vioscreen_tryptoph
0.659205523
vioscreen_tyrosine
1.567616418
vioscreen_user_id
20213.0
vioscreen_v_drkgr
1.028301333
vioscreen_v_orange
0.488547965
vioscreen_v_other
1.478712442
vioscreen_v_potato
1.029068453
vioscreen_v_starcy
0.17306848800000002
vioscreen_v_tomato
0.68153419
vioscreen_v_total
4.879314599999999
vioscreen_valine
2.556603001
vioscreen_veg5_day
7.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
9.6
vioscreen_visit
1.0
vioscreen_vita_iu
26869.68493
vioscreen_vita_rae
1411.825514
vioscreen_vita_re
2741.5876710000002
vioscreen_vitb12
0.7302465990000001
vioscreen_vitb6
2.220986395
vioscreen_vitc
162.1117616
vioscreen_vitd
0.46950683600000004
vioscreen_vitd2
0.0
vioscreen_vitd3
0.46950683600000004
vioscreen_vitd_iu
18.78027344
vioscreen_vite_iu
18.27822132
vioscreen_vitk
481.40432360000005
vioscreen_water
3277.40411
vioscreen_weight
Not provided
vioscreen_wgrain
5.623725787000001
vioscreen_whole_grain_servings
5.524
vioscreen_xylitol
0.038383567
vioscreen_zinc
12.24021966
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily