American Gut Project; 10317.000020627
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632939
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020627
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20627
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
Self-diagnosed
autoimmune
I do not have this condition
birth year
1976.0
bmi
27.12
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/09/2015
collection month
April
collection season
Spring
collection time
14:15
collection_timestamp
2015-04-09 14:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
14.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1627251a3d3bd079353afe018807454f19e2c89c45d0015b67714caf5ea5d426019d9fba12ffc379cd23317b2765e913cfa541f6930e02cba1ea524593fb89d9
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
1 year
latitude
52.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-4.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000020627
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
38a46a384b8a3883
teethbrushing_frequency
Not provided
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.845945175
vioscreen_a_cal
120.9965111
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.5348218110000005
vioscreen_addsugar
42.97783605
vioscreen_adsugtot
40.71597549
vioscreen_age
215.0
vioscreen_alanine
5.935642525
vioscreen_alcohol
12.28687661
vioscreen_alcohol_servings
0.84595
vioscreen_alphacar
1434.109503
vioscreen_alphtoce
11.99832914
vioscreen_alphtoco
10.74301423
vioscreen_arginine
6.782356325
vioscreen_ash
24.806381100000003
vioscreen_aspartam
0.0
vioscreen_aspartic
10.90600118
vioscreen_avcarb
195.8604666
vioscreen_bcodeid
Not provided
vioscreen_betacar
11098.63151
vioscreen_betacryp
109.20613229999998
vioscreen_betaine
165.7133241
vioscreen_betatoco
0.320876699
vioscreen_biochana
0.020136987
vioscreen_bmi
Not provided
vioscreen_caffeine
489.4315068
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.12364
vioscreen_calcium_servings
3.68077
vioscreen_calories
2665.616952
vioscreen_carbo
217.6133776
vioscreen_cholest
778.8444348999999
vioscreen_choline
739.5045377
vioscreen_clac9t11
0.360356245
vioscreen_clat10c12
0.081945226
vioscreen_copper
1.967588994
vioscreen_coumest
0.028657534
vioscreen_cystine
1.502794741
vioscreen_d_cheese
0.586328752
vioscreen_d_milk
1.038520625
vioscreen_d_tot_soym
2.123643682
vioscreen_d_total
2.123643682
vioscreen_d_yogurt
0.49843833600000004
vioscreen_daidzein
1.1338632240000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.4567401209999997
vioscreen_discfat_oil
14.35161735
vioscreen_discfat_sol
93.96369863
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0010136989999999999
vioscreen_f_citmlb
0.131835634
vioscreen_f_nj_citmlb
0.128000003
vioscreen_f_nj_other
0.6266849879999999
vioscreen_f_nj_total
0.7547399229999999
vioscreen_f_other
0.6266849879999999
vioscreen_f_total
0.7586029470000001
vioscreen_fat
141.64881210000001
vioscreen_fiber
21.74786227
vioscreen_fibh2o
5.237945473
vioscreen_fibinso
16.43389073
vioscreen_finished
4/7/15
vioscreen_fish_servings
1.29731
vioscreen_fol_deqv
543.4241437999999
vioscreen_fol_nat
449.2531678
vioscreen_fol_syn
55.32754174
vioscreen_formontn
0.00230137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0411
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.5
vioscreen_fructose
11.57638458
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.496876505
vioscreen_g_total
3.8773146539999996
vioscreen_g_whl
1.3804109759999998
vioscreen_galactos
0.8239451790000001
vioscreen_gammtoco
11.02972429
vioscreen_gender
false
vioscreen_genistn
1.3567944669999998
vioscreen_glac
84.94215539
vioscreen_gltc
93.00691353
vioscreen_glucose
14.0074794
vioscreen_glutamic
20.22797383
vioscreen_glycine
5.19810975
vioscreen_glycitn
0.20161644899999998
vioscreen_grams
4829.688356000001
vioscreen_hei2010_dairy
6.1
vioscreen_hei2010_empty_calories
8.7
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
1.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
54.7
vioscreen_hei2010_sea_foods_plant_protiens
4.9
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
4.6
vioscreen_hei2010_whole_fruit
3.5
vioscreen_hei2010_whole_grains
3.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.8
vioscreen_hei_grains
2.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.1
vioscreen_hei_non_juice_frt
3.5
vioscreen_hei_oils
4.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
46.9
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
6.0
vioscreen_hei_veg
4.6
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
3.3341913930000002
vioscreen_inositol
0.070273982
vioscreen_iron
14.2684383
vioscreen_isoleuc
5.47580834
vioscreen_isomalt
0.0
vioscreen_joules
11152.94521
vioscreen_juice_servings
0.00773
vioscreen_lactitol
0.0
vioscreen_lactose
19.85841048
vioscreen_legumes
0.167671245
vioscreen_leucine
9.22712302
vioscreen_line_gi
367.4299229
vioscreen_low_fat_dairy_serving
0.49843999999999994
vioscreen_lutzeax
6965.289041
vioscreen_lycopene
4725.1527399999995
vioscreen_lysine
8.574190657
vioscreen_m_egg
2.169506836
vioscreen_m_fish_hi
0.378027386
vioscreen_m_fish_lo
0.36123289299999994
vioscreen_m_frank
0.522219138
vioscreen_m_meat
3.5319175410000003
vioscreen_m_mpf
7.159095409
vioscreen_m_nutsd
1.2569040790000001
vioscreen_m_organ
0.135369863
vioscreen_m_poult
2.230328787
vioscreen_m_soy
0.09676711199999999
vioscreen_magnes
438.30654969999995
vioscreen_maltitol
0.0
vioscreen_maltose
2.547808085
vioscreen_mangan
8.656191139
vioscreen_mannitol
0.304410981
vioscreen_methhis3
27.06273812
vioscreen_methion
2.8420821519999997
vioscreen_mfa141
0.22539723
vioscreen_mfa161
2.794246475
vioscreen_mfa181
46.647923799999994
vioscreen_mfa201
0.5233150120000001
vioscreen_mfa221
0.074821916
vioscreen_mfatot
50.55764662
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.74301423
vioscreen_nccglbr
138.4671126
vioscreen_nccglgr
96.86166524
vioscreen_niacin
26.55679848
vioscreen_niacineq
47.73641374
vioscreen_nitrogen
19.04098218
vioscreen_non_fried_fish_servings
1.29731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.857835744
vioscreen_oxalic
509.04267980000003
vioscreen_oxalicm
503.17311639999997
vioscreen_pantothe
7.666574138
vioscreen_pectins
3.7307951630000002
vioscreen_pfa182
15.97350573
vioscreen_pfa183
1.5566573469999998
vioscreen_pfa184
0.016136986000000002
vioscreen_pfa204
0.34536985600000003
vioscreen_pfa205
0.071534248
vioscreen_pfa225
0.037369861000000004
vioscreen_pfa226
0.176109586
vioscreen_pfatot
18.37098941
vioscreen_phenylal
5.207808487
vioscreen_phosphor
1800.70137
vioscreen_phytic
705.9195634
vioscreen_pinitol
0.011013698999999998
vioscreen_potass
4342.064384
vioscreen_procdate
10/28/15
vioscreen_proline
6.93750602
vioscreen_protanim
90.56416952
vioscreen_protein
117.72458259999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
27.15192637
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
494.0
vioscreen_retinol
994.1823630000001
vioscreen_rgrain
2.580273772
vioscreen_ribofla
2.835780314
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.82649
vioscreen_satoco
0.0
vioscreen_selenium
162.7552975
vioscreen_serine
5.621945232000001
vioscreen_sfa100
1.61939714
vioscreen_sfa120
1.9781646309999998
vioscreen_sfa140
6.075670885
vioscreen_sfa160
30.6731539
vioscreen_sfa170
0.38005484
vioscreen_sfa180
13.91923561
vioscreen_sfa200
0.23126028399999998
vioscreen_sfa220
0.23158899600000002
vioscreen_sfa40
1.9459450919999999
vioscreen_sfa60
1.1917259740000001
vioscreen_sfa80
0.792849272
vioscreen_sfatot
59.57530501
vioscreen_sodium
4951.390753
vioscreen_sorbitol
0.6767123709999999
vioscreen_srvid
18448.0
vioscreen_starch
73.11589790000001
vioscreen_started
4/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.42126766
vioscreen_sweet_servings
0.8547899999999999
vioscreen_tagatose
4.028684851
vioscreen_tfa161t
0.103123296
vioscreen_tfa181t
4.133068012
vioscreen_tfa182t
0.542000005
vioscreen_tgrain
4.044712516000001
vioscreen_thiamin
1.4697533180000002
vioscreen_threonin
4.734027518
vioscreen_time
25.0
vioscreen_totaltfa
4.866629655
vioscreen_totcla
0.441342456
vioscreen_totfolat
504.58069349999994
vioscreen_totsugar
93.04526969
vioscreen_tryptoph
1.271178196
vioscreen_tyrosine
4.203122993
vioscreen_user_id
18448.0
vioscreen_v_drkgr
0.544931532
vioscreen_v_orange
0.487315055
vioscreen_v_other
0.790164394
vioscreen_v_potato
0.333726042
vioscreen_v_starcy
0.109205471
vioscreen_v_tomato
0.28649315
vioscreen_v_total
2.5518357369999998
vioscreen_valine
6.2324660210000005
vioscreen_veg5_day
3.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
23096.79178
vioscreen_vita_rae
1983.376712
vioscreen_vita_re
2972.566781
vioscreen_vitb12
8.412576252000001
vioscreen_vitb6
2.3790141069999997
vioscreen_vitc
85.10136451
vioscreen_vitd
9.67030046
vioscreen_vitd2
0.000986301
vioscreen_vitd3
9.669341957
vioscreen_vitd_iu
386.8120184
vioscreen_vite_iu
16.01611194
vioscreen_vitk
312.4611943
vioscreen_water
4374.717466
vioscreen_weight
Not provided
vioscreen_wgrain
1.464465834
vioscreen_whole_grain_servings
1.3804100000000001
vioscreen_xylitol
0.026739727
vioscreen_zinc
16.03701573
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
76.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)