American Gut Project; 10317.000027852
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633237
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:27:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027852
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27852
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1950.0
bmi
24.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-24
collection month
May
collection season
Spring
collection time
20:00
collection_timestamp
2015-05-24 20:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
191.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
682cebb697115cbf4a5ae866c34218183f3d53b8988894aa20f416e8aba5179dd526ca8c3f233104fb23391b20537be3f7e9942189ab5f3af14daad442b1749e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
Not provided
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
false
lung disease
Not provided
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Not provided
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000027852
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Regularly (3-5 times/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
fbde211cc0d50e75
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.274630152
vioscreen_a_cal
35.54873983
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
23.58624518
vioscreen_addsugar
105.7625428
vioscreen_adsugtot
99.24648973
vioscreen_age
215.0
vioscreen_alanine
4.475041136000001
vioscreen_alcohol
4.153342385
vioscreen_alcohol_servings
0.27463000000000004
vioscreen_alphacar
1797.827055
vioscreen_alphtoce
12.92929019
vioscreen_alphtoco
11.36490395
vioscreen_arginine
4.869480081
vioscreen_ash
28.25553296
vioscreen_aspartam
0.0
vioscreen_aspartic
8.466519959
vioscreen_avcarb
443.08403250000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
7717.497259999999
vioscreen_betacryp
208.64295800000002
vioscreen_betaine
196.8754495
vioscreen_betatoco
0.558383555
vioscreen_biochana
0.021999999
vioscreen_bmi
Not provided
vioscreen_caffeine
53.06399829
vioscreen_calcium
true
vioscreen_calcium_avg
1500.0
vioscreen_calcium_dose
1500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
2.31586
vioscreen_calcium_servings
4.85805
vioscreen_calories
2890.0253420000004
vioscreen_carbo
483.6056935
vioscreen_cholest
132.28329409999998
vioscreen_choline
356.423994
vioscreen_clac9t11
0.067561649
vioscreen_clat10c12
0.011917806999999999
vioscreen_copper
1.905698175
vioscreen_coumest
0.028465754
vioscreen_cystine
1.196931437
vioscreen_d_cheese
0.71416442
vioscreen_d_milk
0.10084930800000001
vioscreen_d_tot_soym
2.3158629530000003
vioscreen_d_total
2.3158629530000003
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
2.935753224
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.494629575
vioscreen_discfat_oil
19.40082272
vioscreen_discfat_sol
35.16731325
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
1.92953416
vioscreen_f_nj_citmlb
1.858547765
vioscreen_f_nj_other
0.8845204809999999
vioscreen_f_nj_total
2.74309567
vioscreen_f_other
3.3905480789999998
vioscreen_f_total
5.320136585
vioscreen_fat
67.87139341
vioscreen_fiber
40.51826841
vioscreen_fibh2o
11.10109562
vioscreen_fibinso
29.38690069
vioscreen_finished
5/23/15
vioscreen_fish_servings
1.11846
vioscreen_fol_deqv
699.8129281
vioscreen_fol_nat
374.3047517
vioscreen_fol_syn
191.28542380000002
vioscreen_formontn
0.004575343
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
7.4
vioscreen_frtsumm
10.6
vioscreen_fructose
87.28600171
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
7.326520361
vioscreen_g_total
10.02602874
vioscreen_g_whl
2.699534126
vioscreen_galactos
2.038219379
vioscreen_gammtoco
13.07293317
vioscreen_gender
false
vioscreen_genistn
4.125068226000001
vioscreen_glac
196.4913099
vioscreen_gltc
214.2086687
vioscreen_glucose
70.95890946
vioscreen_glutamic
20.56205453
vioscreen_glycine
3.673671942
vioscreen_glycitn
0.684410952
vioscreen_grams
3561.2678079999996
vioscreen_hei2010_dairy
6.2
vioscreen_hei2010_empty_calories
16.3
vioscreen_hei2010_fatty_acids
7.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.7
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
71.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.5
vioscreen_hei2010_veg
4.3
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.2
vioscreen_hei_drk_g_org_veg_leg
2.9
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
6.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.6
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
74.7
vioscreen_hei_sodium
2.8
vioscreen_hei_sol_fat_alc_add_sug
16.1
vioscreen_hei_veg
4.3
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
2.536904029
vioscreen_inositol
0.48227396899999997
vioscreen_iron
19.53131421
vioscreen_isoleuc
4.286958543
vioscreen_isomalt
0.0
vioscreen_joules
12091.864379999999
vioscreen_juice_servings
5.15411
vioscreen_lactitol
0.0
vioscreen_lactose
23.93961633
vioscreen_legumes
0.444602736
vioscreen_leucine
7.631233278
vioscreen_line_gi
879.5936644
vioscreen_low_fat_dairy_serving
1.4994
vioscreen_lutzeax
3360.5825340000006
vioscreen_lycopene
13607.891780000002
vioscreen_lysine
6.042109241
vioscreen_m_egg
0.09695890199999999
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.238575347
vioscreen_m_frank
1.4946300769999998
vioscreen_m_meat
0.290109587
vioscreen_m_mpf
3.104767097
vioscreen_m_nutsd
0.859835606
vioscreen_m_organ
0.0
vioscreen_m_poult
0.673479472
vioscreen_m_soy
0.46317803399999996
vioscreen_magnes
483.45552230000004
vioscreen_maltitol
0.0
vioscreen_maltose
7.611670591
vioscreen_mangan
7.028738362
vioscreen_mannitol
0.28408221899999997
vioscreen_methhis3
10.36167126
vioscreen_methion
2.063260348
vioscreen_mfa141
0.049369864000000006
vioscreen_mfa161
0.863479405
vioscreen_mfa181
22.99909568
vioscreen_mfa201
0.257945168
vioscreen_mfa221
0.068684936
vioscreen_mfatot
24.65983519
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
11.36490395
vioscreen_nccglbr
312.9237586
vioscreen_nccglgr
218.9221318
vioscreen_niacin
25.55237853
vioscreen_niacineq
42.183971
vioscreen_nitrogen
16.02052119
vioscreen_non_fried_fish_servings
1.11846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.62484967
vioscreen_oxalic
260.5409461
vioscreen_oxalicm
253.0721961
vioscreen_pantothe
6.751260167000001
vioscreen_pectins
6.194219553
vioscreen_pfa182
15.46684905
vioscreen_pfa183
1.39550706
vioscreen_pfa184
0.015780823
vioscreen_pfa204
0.07049314400000001
vioscreen_pfa205
0.059397255999999996
vioscreen_pfa225
0.030164382000000003
vioscreen_pfa226
0.12476712599999999
vioscreen_pfatot
17.29024508
vioscreen_phenylal
4.550301998999999
vioscreen_phosphor
1913.773459
vioscreen_phytic
1149.425428
vioscreen_pinitol
0.030273976
vioscreen_potass
4751.761301
vioscreen_procdate
10/28/15
vioscreen_proline
7.575533765
vioscreen_protanim
47.44411387
vioscreen_protein
98.06961687
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
50.59851777
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
431.0
vioscreen_retinol
170.9111408
vioscreen_rgrain
7.676355817
vioscreen_ribofla
2.2231507180000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.79496
vioscreen_satoco
0.0
vioscreen_selenium
149.2148759
vioscreen_serine
4.769699473
vioscreen_sfa100
0.356082195
vioscreen_sfa120
0.538602771
vioscreen_sfa140
1.7624658869999998
vioscreen_sfa160
10.88564386
vioscreen_sfa170
0.071287683
vioscreen_sfa180
4.570027892
vioscreen_sfa200
0.132739718
vioscreen_sfa220
0.171150678
vioscreen_sfa40
0.45578078200000005
vioscreen_sfa60
0.211232893
vioscreen_sfa80
0.18265752899999999
vioscreen_sfatot
19.8645762
vioscreen_sodium
4866.764040999999
vioscreen_sorbitol
1.373972519
vioscreen_srvid
18749.0
vioscreen_starch
151.08873069999999
vioscreen_started
5/23/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
71.8828232
vioscreen_sweet_servings
1.2411
vioscreen_tagatose
10.92824674
vioscreen_tfa161t
0.028000001
vioscreen_tfa181t
2.237616552
vioscreen_tfa182t
0.377123229
vioscreen_tgrain
11.174163900000002
vioscreen_thiamin
2.407288099
vioscreen_threonin
3.540163808
vioscreen_time
36.0
vioscreen_totaltfa
2.7474794989999998
vioscreen_totcla
0.080246583
vioscreen_totfolat
565.5900684999999
vioscreen_totsugar
261.6550942
vioscreen_tryptoph
1.000657675
vioscreen_tyrosine
3.404411253
vioscreen_user_id
18749.0
vioscreen_v_drkgr
0.198191792
vioscreen_v_orange
0.478301333
vioscreen_v_other
0.606191766
vioscreen_v_potato
0.360383543
vioscreen_v_starcy
0.39895893299999996
vioscreen_v_tomato
0.713780819
vioscreen_v_total
2.755945159
vioscreen_valine
5.25624699
vioscreen_veg5_day
3.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
15105.21233
vioscreen_vita_rae
897.6392979
vioscreen_vita_re
1624.3655820000001
vioscreen_vitb12
3.8062192319999997
vioscreen_vitb6
2.524164236
vioscreen_vitc
208.1495719
vioscreen_vitd
3.2361097360000004
vioscreen_vitd2
0.001232877
vioscreen_vitd3
3.2349315069999998
vioscreen_vitd_iu
129.4443894
vioscreen_vite_iu
16.92789223
vioscreen_vitk
143.31083049999998
vioscreen_water
2898.0633559999997
vioscreen_weight
Not provided
vioscreen_wgrain
3.497863268
vioscreen_whole_grain_servings
2.6995299999999998
vioscreen_xylitol
0.070246584
vioscreen_zinc
14.09243632
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
89.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)