American Gut Project; 10317.000029323
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634017
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029323
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29323
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1955.0
bmi
20.6
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-30
collection month
July
collection season
Summer
collection time
08:30
collection_timestamp
2015-07-30 08:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
233.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ff6c25fdfa323f184b6e62c09cc0dcc378b73b54fcc56d6327b34c6cf26013dc333609999572a088a1c0a55761f24fff34c8bcec2939f49c0e1887bbb27fd80d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
53.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029323
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
f25a3751f812fe33
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.8171779680000002
vioscreen_a_cal
223.9696918
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.53123261
vioscreen_addsugar
64.89613656
vioscreen_adsugtot
60.03263057
vioscreen_age
215.0
vioscreen_alanine
3.384795056
vioscreen_alcohol
28.08566995
vioscreen_alcohol_servings
1.81718
vioscreen_alphacar
2041.5176370000001
vioscreen_alphtoce
9.246657615
vioscreen_alphtoco
8.348985311
vioscreen_arginine
3.7772323819999998
vioscreen_ash
22.63112425
vioscreen_aspartam
0.0
vioscreen_aspartic
7.5711780289999995
vioscreen_avcarb
217.0650685
vioscreen_bcodeid
Not provided
vioscreen_betacar
7290.623288
vioscreen_betacryp
103.9229238
vioscreen_betaine
65.06597282
vioscreen_betatoco
0.33232873399999996
vioscreen_biochana
0.004
vioscreen_bmi
Not provided
vioscreen_caffeine
722.4739726
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
5.000030000000001
vioscreen_calcium_servings
5.98499
vioscreen_calories
1890.5273969999998
vioscreen_carbo
238.484375
vioscreen_cholest
156.7348031
vioscreen_choline
393.178339
vioscreen_clac9t11
0.04583561
vioscreen_clat10c12
0.009232876
vioscreen_copper
1.321370164
vioscreen_coumest
0.274547964
vioscreen_cystine
0.86279439
vioscreen_d_cheese
0.5162465970000001
vioscreen_d_milk
4.223397367
vioscreen_d_tot_soym
5.000027424
vioscreen_d_total
5.000027424
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.524191786
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.614109656
vioscreen_discfat_oil
17.53871201
vioscreen_discfat_sol
21.40827403
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001589041
vioscreen_f_citmlb
0.629178065
vioscreen_f_nj_citmlb
0.576109628
vioscreen_f_nj_other
0.660273931
vioscreen_f_nj_total
1.236383558
vioscreen_f_other
0.660273931
vioscreen_f_total
1.289452038
vioscreen_fat
53.06262843
vioscreen_fiber
21.3892324
vioscreen_fibh2o
8.367398197
vioscreen_fibinso
13.05369756
vioscreen_finished
7/24/15
vioscreen_fish_servings
2.4584599999999996
vioscreen_fol_deqv
345.256357
vioscreen_fol_nat
288.7928938
vioscreen_fol_syn
33.20851884
vioscreen_formontn
0.002136987
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.1
vioscreen_frtsumm
2.6
vioscreen_fructose
14.45296179
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.270849275
vioscreen_g_total
3.04969867
vioscreen_g_whl
1.778821971
vioscreen_galactos
0.47232879200000005
vioscreen_gammtoco
7.489425032000001
vioscreen_gender
false
vioscreen_genistn
0.341972602
vioscreen_glac
90.09099957
vioscreen_gltc
97.97981593
vioscreen_glucose
15.21454811
vioscreen_glutamic
16.21635542
vioscreen_glycine
2.63279444
vioscreen_glycitn
0.143479449
vioscreen_grams
4096.69589
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
16.7
vioscreen_hei2010_fatty_acids
3.4
vioscreen_hei2010_fruit
4.3
vioscreen_hei2010_greens_beans
4.6
vioscreen_hei2010_protien_foods
3.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.3
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
4.3
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
7.9
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.7
vioscreen_hei_sat_fat
8.8
vioscreen_hei_score
75.8
vioscreen_hei_sodium
5.3
vioscreen_hei_sol_fat_alc_add_sug
11.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
2.228958757
vioscreen_inositol
0.22594520899999998
vioscreen_iron
9.300383267
vioscreen_isoleuc
3.795205479
vioscreen_isomalt
0.0
vioscreen_joules
7909.967807999999
vioscreen_juice_servings
0.10611
vioscreen_lactitol
0.0
vioscreen_lactose
55.07391374
vioscreen_legumes
0.016438356
vioscreen_leucine
6.798821436
vioscreen_line_gi
506.6844178
vioscreen_low_fat_dairy_serving
4.22981
vioscreen_lutzeax
4078.6863009999997
vioscreen_lycopene
2415.469521
vioscreen_lysine
6.012164222999999
vioscreen_m_egg
0.220438375
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.643260297
vioscreen_m_frank
0.158575335
vioscreen_m_meat
0.438547965
vioscreen_m_mpf
2.316520461
vioscreen_m_nutsd
1.127260307
vioscreen_m_organ
0.0
vioscreen_m_poult
0.318438344
vioscreen_m_soy
0.0009589039999999999
vioscreen_magnes
535.9794092
vioscreen_maltitol
0.0
vioscreen_maltose
1.4729863419999998
vioscreen_mangan
5.486958542999999
vioscreen_mannitol
0.250465748
vioscreen_methhis3
7.949397341
vioscreen_methion
1.919479579
vioscreen_mfa141
0.061369862000000004
vioscreen_mfa161
0.601123298
vioscreen_mfa181
16.18914678
vioscreen_mfa201
0.270904102
vioscreen_mfa221
0.123232875
vioscreen_mfatot
17.41005592
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.348985311
vioscreen_nccglbr
167.4416417
vioscreen_nccglgr
117.1232128
vioscreen_niacin
20.73071222
vioscreen_niacineq
36.61701627
vioscreen_nitrogen
12.97712436
vioscreen_non_fried_fish_servings
2.4584599999999996
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.307643692
vioscreen_oxalic
256.9607235
vioscreen_oxalicm
270.2235017
vioscreen_pantothe
8.193891133
vioscreen_pectins
3.240191901
vioscreen_pfa182
11.46413741
vioscreen_pfa183
0.920027391
vioscreen_pfa184
0.029287672999999997
vioscreen_pfa204
0.067205481
vioscreen_pfa205
0.105260279
vioscreen_pfa225
0.040630134
vioscreen_pfa226
0.212767133
vioscreen_pfatot
12.90564266
vioscreen_phenylal
3.825698978
vioscreen_phosphor
1982.5131850000002
vioscreen_phytic
725.6702055
vioscreen_pinitol
0.005013698
vioscreen_potass
4801.755137
vioscreen_procdate
10/28/15
vioscreen_proline
5.960904056
vioscreen_protanim
61.36284782
vioscreen_protein
80.68012628
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.31388993
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
268.0
vioscreen_retinol
730.1120718999999
vioscreen_rgrain
0.869890354
vioscreen_ribofla
3.535999706
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.6246
vioscreen_satoco
0.0
vioscreen_selenium
97.61898545
vioscreen_serine
4.247808085
vioscreen_sfa100
0.49095889600000003
vioscreen_sfa120
1.8307122219999998
vioscreen_sfa140
1.976630391
vioscreen_sfa160
8.56720556
vioscreen_sfa170
0.056356164
vioscreen_sfa180
3.874137147
vioscreen_sfa200
0.130136986
vioscreen_sfa220
0.19156163899999998
vioscreen_sfa40
0.39021915799999995
vioscreen_sfa60
0.195479469
vioscreen_sfa80
0.35446576700000004
vioscreen_sfatot
18.51027799
vioscreen_sodium
2663.347089
vioscreen_sorbitol
0.90816433
vioscreen_srvid
20215.0
vioscreen_starch
49.9184664
vioscreen_started
7/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
59.69805758
vioscreen_sweet_servings
0.9496100000000001
vioscreen_tagatose
3.51997271
vioscreen_tfa161t
0.033068492000000005
vioscreen_tfa181t
0.9330958540000001
vioscreen_tfa182t
0.267178094
vioscreen_tgrain
3.059342225
vioscreen_thiamin
1.316219131
vioscreen_threonin
3.20569851
vioscreen_time
30.0
vioscreen_totaltfa
1.235479485
vioscreen_totcla
0.055068494
vioscreen_totfolat
322.0012842
vioscreen_totsugar
148.450289
vioscreen_tryptoph
0.9519726059999999
vioscreen_tyrosine
3.340164143
vioscreen_user_id
20215.0
vioscreen_v_drkgr
0.347945205
vioscreen_v_orange
0.379835615
vioscreen_v_other
0.7560273470000001
vioscreen_v_potato
0.307643838
vioscreen_v_starcy
0.039890412
vioscreen_v_tomato
0.34961644
vioscreen_v_total
2.180931781
vioscreen_valine
4.645726201
vioscreen_veg5_day
3.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.4
vioscreen_visit
1.0
vioscreen_vita_iu
16379.284930000002
vioscreen_vita_rae
1427.057106
vioscreen_vita_re
2124.003082
vioscreen_vitb12
7.431807845
vioscreen_vitb6
1.629589175
vioscreen_vitc
102.5836152
vioscreen_vitd
16.38106673
vioscreen_vitd2
0.0
vioscreen_vitd3
16.38106673
vioscreen_vitd_iu
655.2426691000001
vioscreen_vite_iu
12.37632839
vioscreen_vitk
169.6113228
vioscreen_water
3700.827397
vioscreen_weight
Not provided
vioscreen_wgrain
2.189452122
vioscreen_whole_grain_servings
1.77882
vioscreen_xylitol
0.052657538
vioscreen_zinc
11.35925995
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)