American Gut Project; 10317.000020628
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632940
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020628
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20628
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
18.31
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/09/2015
collection month
April
collection season
Spring
collection time
09:05
collection_timestamp
2015-04-09 09:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
14.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
aff46ed6a8e147dda0e3a14b3d2cc60c1275aafdd32625b3830e7d29a8b72d63c5a4809e83e22b94d0addd10a097998e9515ed7e4e3c1c4e235f55fed6d64fa5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.9
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
-4.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000020628
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
6e24431ef904278b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.755589148
vioscreen_a_cal
247.7424443
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.601315015
vioscreen_addsugar
45.40717038
vioscreen_adsugtot
40.91619221
vioscreen_age
215.0
vioscreen_alanine
6.074795322999999
vioscreen_alcohol
25.29802815
vioscreen_alcohol_servings
1.7555900000000002
vioscreen_alphacar
2085.534932
vioscreen_alphtoce
8.504794521
vioscreen_alphtoco
7.4633434560000005
vioscreen_arginine
6.681395147000001
vioscreen_ash
24.9579436
vioscreen_aspartam
0.0
vioscreen_aspartic
10.68054768
vioscreen_avcarb
236.716738
vioscreen_bcodeid
Not provided
vioscreen_betacar
7733.997945
vioscreen_betacryp
46.58320313
vioscreen_betaine
360.8019264
vioscreen_betatoco
0.335972616
vioscreen_biochana
0.014465755
vioscreen_bmi
Not provided
vioscreen_caffeine
451.23732879999994
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.764
vioscreen_calcium_servings
3.78896
vioscreen_calories
2644.93476
vioscreen_carbo
263.4385274
vioscreen_cholest
551.8702911
vioscreen_choline
654.6339041
vioscreen_clac9t11
0.237890395
vioscreen_clat10c12
0.053890411
vioscreen_copper
1.8344658
vioscreen_coumest
0.15076713
vioscreen_cystine
1.539178383
vioscreen_d_cheese
0.45575344100000004
vioscreen_d_milk
1.282191864
vioscreen_d_tot_soym
1.76399996
vioscreen_d_total
1.76399996
vioscreen_d_yogurt
0.024657534
vioscreen_daidzein
0.34432872600000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.254465934
vioscreen_discfat_oil
12.06391936
vioscreen_discfat_sol
66.91180437
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.015643836
vioscreen_f_nj_citmlb
0.012
vioscreen_f_nj_other
0.220465715
vioscreen_f_nj_total
0.232465728
vioscreen_f_other
0.319643789
vioscreen_f_total
0.335287643
vioscreen_fat
104.70231159999999
vioscreen_fiber
26.71216556
vioscreen_fibh2o
7.345697774
vioscreen_fibinso
19.26605308
vioscreen_finished
4/7/15
vioscreen_fish_servings
1.6228799999999999
vioscreen_fol_deqv
832.6269692000001
vioscreen_fol_nat
342.9544521
vioscreen_fol_syn
287.9884204
vioscreen_formontn
0.0007945210000000001
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
0.3
vioscreen_frtsumm
0.7
vioscreen_fructose
10.64309517
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
2.4488762840000002
vioscreen_g_total
7.836328125
vioscreen_g_whl
5.387424417
vioscreen_galactos
0.292027408
vioscreen_gammtoco
8.862027772000001
vioscreen_gender
false
vioscreen_genistn
0.45397263600000004
vioscreen_glac
121.7370719
vioscreen_gltc
135.23896619999996
vioscreen_glucose
11.05413902
vioscreen_glutamic
21.89509578
vioscreen_glycine
5.418822573
vioscreen_glycitn
0.069780825
vioscreen_grams
4062.9821920000004
vioscreen_hei2010_dairy
5.1
vioscreen_hei2010_empty_calories
14.3
vioscreen_hei2010_fatty_acids
0.2
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
2.3
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
58.9
vioscreen_hei2010_sea_foods_plant_protiens
3.0
vioscreen_hei2010_sodium
3.4
vioscreen_hei2010_veg
3.7
vioscreen_hei2010_whole_fruit
1.1
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
3.4
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
4.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.1
vioscreen_hei_non_juice_frt
1.1
vioscreen_hei_oils
3.8
vioscreen_hei_sat_fat
0.8
vioscreen_hei_score
50.0
vioscreen_hei_sodium
2.7
vioscreen_hei_sol_fat_alc_add_sug
8.7
vioscreen_hei_veg
3.7
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
3.429041029
vioscreen_inositol
0.070082192
vioscreen_iron
24.22618793
vioscreen_isoleuc
5.4658082729999995
vioscreen_isomalt
0.0
vioscreen_joules
11066.40548
vioscreen_juice_servings
0.20564000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
16.38907053
vioscreen_legumes
0.108958905
vioscreen_leucine
9.319560681
vioscreen_line_gi
589.5632277000001
vioscreen_low_fat_dairy_serving
0.024659999999999998
vioscreen_lutzeax
2288.283562
vioscreen_lycopene
5145.693836
vioscreen_lysine
8.54852111
vioscreen_m_egg
1.179287678
vioscreen_m_fish_hi
0.587671233
vioscreen_m_fish_lo
0.337041087
vioscreen_m_frank
1.109479429
vioscreen_m_meat
4.491232676
vioscreen_m_mpf
8.146329195
vioscreen_m_nutsd
0.32671232899999997
vioscreen_m_organ
0.067671235
vioscreen_m_poult
1.5532056
vioscreen_m_soy
0.0052602740000000005
vioscreen_magnes
497.389512
vioscreen_maltitol
0.0
vioscreen_maltose
4.471095088
vioscreen_mangan
9.445368686
vioscreen_mannitol
0.33684932799999995
vioscreen_methhis3
32.22427226
vioscreen_methion
2.837643809
vioscreen_mfa141
0.244219197
vioscreen_mfa161
2.2516986169999997
vioscreen_mfa181
34.955179799999996
vioscreen_mfa201
0.365534242
vioscreen_mfa221
0.10336987199999999
vioscreen_mfatot
38.375503
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.4633434560000005
vioscreen_nccglbr
185.1952483
vioscreen_nccglgr
129.5503853
vioscreen_niacin
36.56491064
vioscreen_niacineq
58.04300086
vioscreen_nitrogen
20.30205613
vioscreen_non_fried_fish_servings
1.6228799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.784438543
vioscreen_oxalic
302.6930223
vioscreen_oxalicm
304.1514769
vioscreen_pantothe
7.952988549
vioscreen_pectins
2.551150304
vioscreen_pfa182
11.91627381
vioscreen_pfa183
1.4173971930000002
vioscreen_pfa184
0.023260271000000003
vioscreen_pfa204
0.248931509
vioscreen_pfa205
0.092547931
vioscreen_pfa225
0.053150684000000004
vioscreen_pfa226
0.19923288
vioscreen_pfatot
14.07137067
vioscreen_phenylal
5.185973618999999
vioscreen_phosphor
1920.107534
vioscreen_phytic
1048.835788
vioscreen_pinitol
0.007534246999999999
vioscreen_potass
4116.1044520000005
vioscreen_procdate
10/28/15
vioscreen_proline
7.101670857999999
vioscreen_protanim
89.73443386
vioscreen_protein
125.6348352
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
35.90024347
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
493.0
vioscreen_retinol
839.9815068
vioscreen_rgrain
3.3378083530000002
vioscreen_ribofla
3.2797527160000004
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.31444
vioscreen_satoco
0.0
vioscreen_selenium
187.7988228
vioscreen_serine
5.435944189
vioscreen_sfa100
0.98569871
vioscreen_sfa120
1.50539718
vioscreen_sfa140
4.349589309
vioscreen_sfa160
22.21914999
vioscreen_sfa170
0.20065757
vioscreen_sfa180
10.18301316
vioscreen_sfa200
0.12764383599999998
vioscreen_sfa220
0.101808219
vioscreen_sfa40
1.14786285
vioscreen_sfa60
0.653506846
vioscreen_sfa80
0.464328797
vioscreen_sfatot
42.62527825
vioscreen_sodium
4474.283562
vioscreen_sorbitol
0.20106847100000003
vioscreen_srvid
18449.0
vioscreen_starch
116.01309930000001
vioscreen_started
4/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.58876284
vioscreen_sweet_servings
1.01918
vioscreen_tagatose
0.7900547809999999
vioscreen_tfa161t
0.171726028
vioscreen_tfa181t
3.2221097760000004
vioscreen_tfa182t
0.477917815
vioscreen_tgrain
8.310328821
vioscreen_thiamin
2.11671176
vioscreen_threonin
4.753808594
vioscreen_time
39.0
vioscreen_totaltfa
4.141560426
vioscreen_totcla
0.292082193
vioscreen_totfolat
630.942637
vioscreen_totsugar
80.77171982
vioscreen_tryptoph
1.288958907
vioscreen_tyrosine
4.1332606489999995
vioscreen_user_id
18449.0
vioscreen_v_drkgr
0.133178084
vioscreen_v_orange
0.48032878700000003
vioscreen_v_other
0.484301382
vioscreen_v_potato
0.49912326799999995
vioscreen_v_starcy
0.145643835
vioscreen_v_tomato
0.297287677
vioscreen_v_total
2.039972509
vioscreen_valine
6.152137067000001
vioscreen_veg5_day
1.9
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
17466.9863
vioscreen_vita_rae
1573.321062
vioscreen_vita_re
2306.658904
vioscreen_vitb12
9.780902852
vioscreen_vitb6
3.079287845
vioscreen_vitc
54.30014983
vioscreen_vitd
10.71986168
vioscreen_vitd2
0.0015616439999999998
vioscreen_vitd3
10.71832727
vioscreen_vitd_iu
428.794467
vioscreen_vite_iu
11.1015625
vioscreen_vitk
110.8845783
vioscreen_water
3581.5794520000004
vioscreen_weight
Not provided
vioscreen_wgrain
4.972520468
vioscreen_whole_grain_servings
5.38742
vioscreen_xylitol
0.017753427
vioscreen_zinc
21.80511826
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
56.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)