American Gut Project; 10317.000021246
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632960
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021246
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21246
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1966.0
bmi
28.84
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
No
clinical condition
I do not have this condition
collection date
2014-11-29
collection month
November
collection season
Fall
collection time
12:00
collection_timestamp
2014-11-29 12:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
93.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fa25824ee32fbd1b5f9c61e09728c819e3b4227a066f1afbcf675a1b5c8c974d64c99adb73980286723825bc98a5593ee03d4d3b3de694a9415691ed710ad483
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-118.2
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Hispanic
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000021246
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
fe91c02fc1ca49d3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.17005479399999998
vioscreen_a_cal
19.32230041
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.25410892
vioscreen_addsugar
59.81581229
vioscreen_adsugtot
41.60687875
vioscreen_age
214.0
vioscreen_alanine
2.235862418
vioscreen_alcohol
2.5320001469999998
vioscreen_alcohol_servings
0.17005
vioscreen_alphacar
1285.118151
vioscreen_alphtoce
9.729671447000001
vioscreen_alphtoco
8.883451948
vioscreen_arginine
2.61794467
vioscreen_ash
14.18413956
vioscreen_aspartam
0.0
vioscreen_aspartic
4.351042447
vioscreen_avcarb
154.99396399999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
12325.68082
vioscreen_betacryp
161.471875
vioscreen_betaine
120.932042
vioscreen_betatoco
0.190684927
vioscreen_biochana
0.0015616439999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
112.77869220000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.3689
vioscreen_calcium_servings
3.1884099999999997
vioscreen_calories
1156.010702
vioscreen_carbo
178.2661815
vioscreen_cholest
213.7491866
vioscreen_choline
280.4305223
vioscreen_clac9t11
0.023698634
vioscreen_clat10c12
0.004109589
vioscreen_copper
1.15120557
vioscreen_coumest
0.07156164599999999
vioscreen_cystine
0.59345214
vioscreen_d_cheese
0.166054796
vioscreen_d_milk
0.12520548199999998
vioscreen_d_tot_soym
0.368904093
vioscreen_d_total
0.368904093
vioscreen_d_yogurt
0.076684931
vioscreen_daidzein
0.6647670379999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.647863268
vioscreen_discfat_oil
9.452548427
vioscreen_discfat_sol
13.2660571
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000849315
vioscreen_f_citmlb
0.41487673399999997
vioscreen_f_nj_citmlb
0.40783561799999996
vioscreen_f_nj_other
1.234630177
vioscreen_f_nj_total
1.6425476909999999
vioscreen_f_other
1.234630177
vioscreen_f_total
1.6495613830000002
vioscreen_fat
32.617591499999996
vioscreen_fiber
23.11063249
vioscreen_fibh2o
6.034602419
vioscreen_fibinso
17.14046581
vioscreen_finished
12/1/14
vioscreen_fish_servings
2.0453799999999998
vioscreen_fol_deqv
327.90216180000004
vioscreen_fol_nat
289.0915882
vioscreen_fol_syn
22.81197025
vioscreen_formontn
0.000465753
vioscreen_fried_fish_servings
0.09154
vioscreen_fried_food_servings
0.038360000000000005
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.3
vioscreen_fructose
24.02715111
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.434054942
vioscreen_g_total
4.055506542
vioscreen_g_whl
2.62142451
vioscreen_galactos
0.430712305
vioscreen_gammtoco
6.973069617
vioscreen_gender
false
vioscreen_genistn
0.853287705
vioscreen_glac
86.38738763
vioscreen_gltc
94.32913099
vioscreen_glucose
23.78247003
vioscreen_glutamic
7.719971372000001
vioscreen_glycine
1.879616432
vioscreen_glycitn
0.235424658
vioscreen_grams
1595.586301
vioscreen_hei2010_dairy
2.5
vioscreen_hei2010_empty_calories
18.8
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.8
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
77.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.112712285
vioscreen_inositol
0.08693150599999999
vioscreen_iron
9.738439774
vioscreen_isoleuc
1.91482151
vioscreen_isomalt
0.0
vioscreen_joules
4836.748973
vioscreen_juice_servings
0.01408
vioscreen_lactitol
0.0
vioscreen_lactose
2.32353432
vioscreen_legumes
0.125041084
vioscreen_leucine
3.264904283
vioscreen_line_gi
391.2081336
vioscreen_low_fat_dairy_serving
0.07668
vioscreen_lutzeax
15293.91096
vioscreen_lycopene
5695.285959000001
vioscreen_lysine
2.845643929
vioscreen_m_egg
0.80509585
vioscreen_m_fish_hi
0.6251780889999999
vioscreen_m_fish_lo
0.545835647
vioscreen_m_frank
0.324547922
vioscreen_m_meat
0.15597260400000001
vioscreen_m_mpf
1.969287611
vioscreen_m_nutsd
0.127698632
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.250219183
vioscreen_m_soy
0.028465752
vioscreen_magnes
292.8425728
vioscreen_maltitol
0.0
vioscreen_maltose
11.48660237
vioscreen_mangan
3.6066844369999997
vioscreen_mannitol
0.559780717
vioscreen_methhis3
4.790410959
vioscreen_methion
0.9612328929999999
vioscreen_mfa141
0.017095891000000002
vioscreen_mfa161
0.48569871
vioscreen_mfa181
10.51356151
vioscreen_mfa201
0.162109574
vioscreen_mfa221
0.10923287400000001
vioscreen_mfatot
11.35605603
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.835123475
vioscreen_nccglbr
141.89772050000002
vioscreen_nccglgr
99.24925086
vioscreen_niacin
14.55591556
vioscreen_niacineq
23.43783712
vioscreen_nitrogen
7.279096211000001
vioscreen_non_fried_fish_servings
1.95385
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.383917738
vioscreen_oxalic
672.3327055
vioscreen_oxalicm
668.3756848999999
vioscreen_pantothe
3.7846860280000003
vioscreen_pectins
3.913973205
vioscreen_pfa182
8.057644612
vioscreen_pfa183
1.057917681
vioscreen_pfa184
0.023534247
vioscreen_pfa204
0.102657527
vioscreen_pfa205
0.083315073
vioscreen_pfa225
0.029342463
vioscreen_pfa226
0.190191776
vioscreen_pfatot
9.593865047000001
vioscreen_phenylal
1.962575416
vioscreen_phosphor
891.5184075
vioscreen_phytic
534.9249572
vioscreen_pinitol
0.022958904
vioscreen_potass
2419.415753
vioscreen_procdate
10/28/15
vioscreen_proline
2.319315369
vioscreen_protanim
22.99123234
vioscreen_protein
44.92211045
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.93003398
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
706.0
vioscreen_retinol
499.86010269999997
vioscreen_rgrain
1.361671176
vioscreen_ribofla
1.3661370259999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7894
vioscreen_satoco
0.10652055099999999
vioscreen_selenium
76.02586687
vioscreen_serine
2.068876752
vioscreen_sfa100
0.085424658
vioscreen_sfa120
0.11219176199999999
vioscreen_sfa140
0.493342569
vioscreen_sfa160
5.132191112
vioscreen_sfa170
0.040657543
vioscreen_sfa180
1.9551234419999999
vioscreen_sfa200
0.065041095
vioscreen_sfa220
0.05794521
vioscreen_sfa40
0.119506825
vioscreen_sfa60
0.054465756
vioscreen_sfa80
0.041863016
vioscreen_sfatot
8.285316781
vioscreen_sodium
2461.065925
vioscreen_sorbitol
0.715452095
vioscreen_srvid
14737.0
vioscreen_starch
51.99696062
vioscreen_started
12/1/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.44813784
vioscreen_sweet_servings
0.11715999999999999
vioscreen_tagatose
0.695643846
vioscreen_tfa161t
0.008684931
vioscreen_tfa181t
0.599178074
vioscreen_tfa182t
0.12136985
vioscreen_tgrain
3.2252876180000003
vioscreen_thiamin
0.821315065
vioscreen_threonin
1.7787119409999999
vioscreen_time
48.0
vioscreen_totaltfa
0.768657611
vioscreen_totcla
0.029095895
vioscreen_totfolat
311.9028682
vioscreen_totsugar
77.64957192
vioscreen_tryptoph
0.53279444
vioscreen_tyrosine
1.510219459
vioscreen_user_id
14737.0
vioscreen_v_drkgr
1.2700822390000002
vioscreen_v_orange
0.267013717
vioscreen_v_other
0.8464383059999999
vioscreen_v_potato
0.134356167
vioscreen_v_starcy
0.001506849
vioscreen_v_tomato
0.306246572
vioscreen_v_total
2.8257260680000003
vioscreen_valine
2.2457534580000003
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.7
vioscreen_visit
1.0
vioscreen_vita_iu
23413.92877
vioscreen_vita_rae
1587.274829
vioscreen_vita_re
2674.690582
vioscreen_vitb12
4.3831231939999995
vioscreen_vitb6
1.603479506
vioscreen_vitc
144.9562928
vioscreen_vitd
8.089944751
vioscreen_vitd2
2.1218631269999997
vioscreen_vitd3
5.968136638
vioscreen_vitd_iu
323.59779
vioscreen_vite_iu
13.26991652
vioscreen_vitk
613.4696918
vioscreen_water
1336.149829
vioscreen_weight
Not provided
vioscreen_wgrain
1.863616191
vioscreen_whole_grain_servings
2.62142
vioscreen_xylitol
0.037835631
vioscreen_zinc
5.4651504310000005
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
76.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)