American Gut Project; 10317.000023789
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632690
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-09T19:41:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023789
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
48.0
age_corrected
48.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23789
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1967.0
bmi
37.16
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-24
collection month
March
collection season
Spring
collection time
07:00
collection_timestamp
2015-03-24 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southwest
elevation
1576.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
4a50a1961cf34543f8e8770f12e0dfcf82dd365be385a327ea83fedbb5d6c61b95bf849c211edb3e2ccc6d2719708875a91334bd13327d5b1a2c8dbb94f98acd
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-106.6
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000023789
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NM
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a4873f2297254e23
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.3306301170000001
vioscreen_a_cal
146.9531464
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.155233305
vioscreen_addsugar
25.13314962
vioscreen_adsugtot
23.12052119
vioscreen_age
215.0
vioscreen_alanine
4.833315162
vioscreen_alcohol
19.24512254
vioscreen_alcohol_servings
1.33063
vioscreen_alphacar
446.5777397
vioscreen_alphtoce
11.27744943
vioscreen_alphtoco
9.959288046000001
vioscreen_arginine
5.495534902
vioscreen_ash
25.56159033
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
8.831397822000001
vioscreen_avcarb
157.98833480000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
2582.764212
vioscreen_betacryp
34.29421822
vioscreen_betaine
92.36288527
vioscreen_betatoco
0.38342469100000004
vioscreen_biochana
0.003890411
vioscreen_bmi
Not provided
vioscreen_caffeine
646.7841182
vioscreen_calcium
true
vioscreen_calcium_avg
178.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
5
vioscreen_calcium_from_dairy_servings
2.11
vioscreen_calcium_servings
3.5455099999999997
vioscreen_calories
2118.614041
vioscreen_carbo
181.790518
vioscreen_cholest
329.34822349999996
vioscreen_choline
394.7040668
vioscreen_clac9t11
0.191397283
vioscreen_clat10c12
0.04410959
vioscreen_copper
1.348054651
vioscreen_coumest
0.44369866399999996
vioscreen_cystine
1.165781016
vioscreen_d_cheese
1.7919451990000002
vioscreen_d_milk
0.317260261
vioscreen_d_tot_soym
2.1099999
vioscreen_d_total
2.1099999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.479287678
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.575534434
vioscreen_discfat_oil
21.12320607
vioscreen_discfat_sol
58.97851563
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.166602754
vioscreen_f_nj_citmlb
0.162000003
vioscreen_f_nj_other
0.317232858
vioscreen_f_nj_total
0.47926017
vioscreen_f_other
0.317232858
vioscreen_f_total
0.48386289
vioscreen_fat
100.3224315
vioscreen_fiber
23.79635863
vioscreen_fibh2o
11.28945179
vioscreen_fibinso
12.51389394
vioscreen_finished
3/15/15
vioscreen_fish_servings
2.61365
vioscreen_fol_deqv
399.363613
vioscreen_fol_nat
226.62773969999998
vioscreen_fol_syn
101.5177333
vioscreen_formontn
0.00109589
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.36164
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.0
vioscreen_fructose
11.3329329
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
4.67668457
vioscreen_g_total
5.938629736
vioscreen_g_whl
1.262027354
vioscreen_galactos
0.19043832
vioscreen_gammtoco
11.42213586
vioscreen_gender
false
vioscreen_genistn
0.24271231899999998
vioscreen_glac
77.85107556
vioscreen_gltc
84.51581229
vioscreen_glucose
11.36222041
vioscreen_glutamic
18.86698817
vioscreen_glycine
4.405781451
vioscreen_glycitn
0.008630137
vioscreen_grams
4428.490068
vioscreen_hei2010_dairy
7.7
vioscreen_hei2010_empty_calories
13.5
vioscreen_hei2010_fatty_acids
2.0
vioscreen_hei2010_fruit
1.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.4
vioscreen_hei2010_score
59.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
4.7
vioscreen_hei2010_whole_fruit
2.8
vioscreen_hei2010_whole_grains
4.0
vioscreen_hei_drk_g_org_veg_leg
3.9
vioscreen_hei_fruit
1.4
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.7
vioscreen_hei_non_juice_frt
2.8
vioscreen_hei_oils
8.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
54.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.3
vioscreen_hei_veg
4.7
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
2.842054728
vioscreen_inositol
0.072191782
vioscreen_iron
12.33753478
vioscreen_isoleuc
4.487726081
vioscreen_isomalt
0.0
vioscreen_joules
8864.279451999999
vioscreen_juice_servings
0.00921
vioscreen_lactitol
0.0
vioscreen_lactose
5.821424176
vioscreen_legumes
0.073726027
vioscreen_leucine
7.807343616
vioscreen_line_gi
343.5317637
vioscreen_low_fat_dairy_serving
0.56997
vioscreen_lutzeax
2147.157363
vioscreen_lycopene
9227.592466
vioscreen_lysine
6.85161601
vioscreen_m_egg
0.34616437899999997
vioscreen_m_fish_hi
0.612000013
vioscreen_m_fish_lo
0.877506873
vioscreen_m_frank
1.072849305
vioscreen_m_meat
3.660574968
vioscreen_m_mpf
6.6925473570000005
vioscreen_m_nutsd
1.116191707
vioscreen_m_organ
0.0
vioscreen_m_poult
0.469671213
vioscreen_m_soy
0.0013698629999999998
vioscreen_magnes
332.15421660000004
vioscreen_maltitol
0.0
vioscreen_maltose
2.228685186
vioscreen_mangan
3.875698644
vioscreen_mannitol
0.294904087
vioscreen_methhis3
24.32838453
vioscreen_methion
2.306548153
vioscreen_mfa141
0.22452051899999997
vioscreen_mfa161
1.8889041430000002
vioscreen_mfa181
34.40515839
vioscreen_mfa201
0.395835605
vioscreen_mfa221
0.10008219900000001
vioscreen_mfatot
37.46793932
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.959288046000001
vioscreen_nccglbr
120.9500963
vioscreen_nccglgr
84.61863228
vioscreen_niacin
24.67901862
vioscreen_niacineq
42.93359375
vioscreen_nitrogen
16.16709787
vioscreen_non_fried_fish_servings
2.18615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7386847509999999
vioscreen_oxalic
203.6573416
vioscreen_oxalicm
218.8680437
vioscreen_pantothe
7.771834867000001
vioscreen_pectins
2.530849342
vioscreen_pfa182
14.80594499
vioscreen_pfa183
1.368520491
vioscreen_pfa184
0.025452055
vioscreen_pfa204
0.135726019
vioscreen_pfa205
0.10189040699999999
vioscreen_pfa225
0.04583562
vioscreen_pfa226
0.19778087
vioscreen_pfatot
16.81359027
vioscreen_phenylal
4.307918183
vioscreen_phosphor
1595.627911
vioscreen_phytic
735.0139555
vioscreen_pinitol
0.000246575
vioscreen_potass
3130.999315
vioscreen_procdate
10/28/15
vioscreen_proline
6.4284387039999995
vioscreen_protanim
73.58923908
vioscreen_protein
99.62739726
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.03849262
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
525.0
vioscreen_retinol
361.45684930000004
vioscreen_rgrain
4.164466168
vioscreen_ribofla
2.595753458
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.7466
vioscreen_satoco
0.0
vioscreen_selenium
135.2026006
vioscreen_serine
4.415945393
vioscreen_sfa100
0.736821924
vioscreen_sfa120
0.957753471
vioscreen_sfa140
3.790219325
vioscreen_sfa160
19.58813677
vioscreen_sfa170
0.18542465800000002
vioscreen_sfa180
8.941999545
vioscreen_sfa200
0.186383579
vioscreen_sfa220
0.20986303
vioscreen_sfa40
0.907233084
vioscreen_sfa60
0.444821961
vioscreen_sfa80
0.33657533799999995
vioscreen_sfatot
37.0381341
vioscreen_sodium
4350.426027
vioscreen_sorbitol
0.36600003200000003
vioscreen_srvid
18316.0
vioscreen_starch
95.06133348
vioscreen_started
3/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.30063008
vioscreen_sweet_servings
0.73973
vioscreen_tagatose
0.8889863309999999
vioscreen_tfa161t
0.109780821
vioscreen_tfa181t
2.815425005
vioscreen_tfa182t
0.521178154
vioscreen_tgrain
6.39473994
vioscreen_thiamin
1.624027451
vioscreen_threonin
3.79810975
vioscreen_time
18.0
vioscreen_totaltfa
3.48268441
vioscreen_totcla
0.235315067
vioscreen_totfolat
328.1454409
vioscreen_totsugar
48.59950235
vioscreen_tryptoph
1.095671186
vioscreen_tyrosine
3.501671193
vioscreen_user_id
18316.0
vioscreen_v_drkgr
0.507999995
vioscreen_v_orange
0.086904102
vioscreen_v_other
0.5899451689999999
vioscreen_v_potato
0.541616445
vioscreen_v_starcy
0.012410958
vioscreen_v_tomato
0.381479425
vioscreen_v_total
2.120657307
vioscreen_valine
5.065588546
vioscreen_veg5_day
2.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
4.2
vioscreen_visit
1.0
vioscreen_vita_iu
5910.2705479999995
vioscreen_vita_rae
596.7233732999999
vioscreen_vita_re
831.9906678
vioscreen_vitb12
5.867287162999999
vioscreen_vitb6
1.8586303709999998
vioscreen_vitc
70.68937286
vioscreen_vitd
6.7583556289999995
vioscreen_vitd2
0.001041096
vioscreen_vitd3
6.757369034
vioscreen_vitd_iu
270.3342252
vioscreen_vite_iu
14.78274026
vioscreen_vitk
138.688003
vioscreen_water
4040.263699
vioscreen_weight
Not provided
vioscreen_wgrain
2.230301363
vioscreen_whole_grain_servings
1.26203
vioscreen_xylitol
0.021123292000000002
vioscreen_zinc
14.542439000000002
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
124.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)