American Gut Project; 10317.000022552
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633405
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:46Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022552
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22552
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
24.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Not provided
collection date
01/05/2015
collection month
January
collection season
Winter
collection time
10:05
collection_timestamp
2015-01-05 10:05
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
2.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
Not provided
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Rarely (less than once/week)
host common name
human
host subject id
f802d42faed3971aa78751fbf1f3d1485bd7e84985ad7b56b05f714d3bf11708a375f1fdad937a1fa234ac922bc61f1736df1dc928ad91688e375be4aac49bfb
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
26.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-81.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000022552
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Not provided
survey_id
f8d680e17492ad99
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.136246522
vioscreen_addsugar
15.77021886
vioscreen_adsugtot
13.7815617
vioscreen_age
215.0
vioscreen_alanine
2.287178269
vioscreen_alcohol
0.010191781
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
505.95098459999997
vioscreen_alphtoce
7.207835242000001
vioscreen_alphtoco
6.069451653
vioscreen_arginine
2.473589001
vioscreen_ash
8.981944296
vioscreen_aspartam
0.0
vioscreen_aspartic
3.931397488
vioscreen_avcarb
112.5954944
vioscreen_bcodeid
Not provided
vioscreen_betacar
2129.034589
vioscreen_betacryp
80.03302119
vioscreen_betaine
43.67599529
vioscreen_betatoco
0.239616415
vioscreen_biochana
0.006958904
vioscreen_bmi
Not provided
vioscreen_caffeine
37.24723352
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.12337000000000001
vioscreen_calcium_servings
0.69614
vioscreen_calories
1056.513527
vioscreen_carbo
126.23862369999999
vioscreen_cholest
301.8917808
vioscreen_choline
298.6234375
vioscreen_clac9t11
0.037452052
vioscreen_clat10c12
0.009178081
vioscreen_copper
0.714712399
vioscreen_coumest
0.051479455
vioscreen_cystine
0.674356079
vioscreen_d_cheese
0.011315068999999999
vioscreen_d_milk
0.11199999199999999
vioscreen_d_tot_soym
0.12336986
vioscreen_d_total
0.12336986
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.067808219
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.576876538
vioscreen_discfat_oil
16.37383348
vioscreen_discfat_sol
22.49882277
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002767123
vioscreen_f_citmlb
0.098328765
vioscreen_f_nj_citmlb
0.09616437900000001
vioscreen_f_nj_other
1.469506669
vioscreen_f_nj_total
1.565671153
vioscreen_f_other
1.469506669
vioscreen_f_total
1.567835476
vioscreen_fat
46.18219178
vioscreen_fiber
13.63674015
vioscreen_fibh2o
2.6287666219999997
vioscreen_fibinso
11.0286581
vioscreen_finished
1/1/15
vioscreen_fish_servings
1.8825
vioscreen_fol_deqv
313.39257280000004
vioscreen_fol_nat
121.4384632
vioscreen_fol_syn
112.8875535
vioscreen_formontn
0.000821918
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
14.50002943
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.883780702
vioscreen_g_total
4.057397126000001
vioscreen_g_whl
2.173616425
vioscreen_galactos
0.07271233099999999
vioscreen_gammtoco
10.15791751
vioscreen_gender
false
vioscreen_genistn
0.077095894
vioscreen_glac
67.56515411
vioscreen_gltc
74.37489833
vioscreen_glucose
12.91610927
vioscreen_glutamic
7.40761585
vioscreen_glycine
1.818219078
vioscreen_glycitn
0.01271233
vioscreen_grams
1752.0530820000001
vioscreen_hei2010_dairy
0.9
vioscreen_hei2010_empty_calories
16.7
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
2.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.4
vioscreen_hei2010_veg
3.3
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
2.6
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.7
vioscreen_hei_score
75.2
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
17.2
vioscreen_hei_veg
3.3
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.121753431
vioscreen_inositol
0.017369866
vioscreen_iron
13.95975359
vioscreen_isoleuc
1.877013826
vioscreen_isomalt
0.0
vioscreen_joules
4420.452055
vioscreen_juice_servings
0.004379999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
1.916575309
vioscreen_legumes
0.0
vioscreen_leucine
3.4006033280000003
vioscreen_line_gi
465.5196062
vioscreen_low_fat_dairy_serving
0.01036
vioscreen_lutzeax
1591.305822
vioscreen_lycopene
62.69424765
vioscreen_lysine
2.7883561639999996
vioscreen_m_egg
1.4224383630000001
vioscreen_m_fish_hi
0.323205483
vioscreen_m_fish_lo
0.749643822
vioscreen_m_frank
0.411808212
vioscreen_m_meat
0.830794494
vioscreen_m_mpf
2.551890752
vioscreen_m_nutsd
0.31005479
vioscreen_m_organ
0.0
vioscreen_m_poult
0.236465747
vioscreen_m_soy
0.0004931509999999999
vioscreen_magnes
154.3830801
vioscreen_maltitol
0.0
vioscreen_maltose
0.981013802
vioscreen_mangan
2.617150879
vioscreen_mannitol
0.46101362700000004
vioscreen_methhis3
8.271013485
vioscreen_methion
1.039369933
vioscreen_mfa141
0.039205481
vioscreen_mfa161
0.616821916
vioscreen_mfa181
17.76994462
vioscreen_mfa201
0.149835613
vioscreen_mfa221
0.032602741
vioscreen_mfatot
18.67180544
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.069451653
vioscreen_nccglbr
87.70015518
vioscreen_nccglgr
61.364335399999995
vioscreen_niacin
13.82314988
vioscreen_niacineq
21.28358572
vioscreen_nitrogen
6.743616224
vioscreen_non_fried_fish_servings
1.8825
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.2535340190000002
vioscreen_oxalic
75.32846747
vioscreen_oxalicm
59.46426584
vioscreen_pantothe
2.448903708
vioscreen_pectins
1.643041156
vioscreen_pfa182
10.34723285
vioscreen_pfa183
1.067616335
vioscreen_pfa184
0.008520548000000001
vioscreen_pfa204
0.12583561699999998
vioscreen_pfa205
0.047369866
vioscreen_pfa225
0.016465753
vioscreen_pfa226
0.114082201
vioscreen_pfatot
11.75457647
vioscreen_phenylal
1.8673699369999999
vioscreen_phosphor
611.5482021
vioscreen_phytic
485.7150257
vioscreen_pinitol
0.0009315069999999999
vioscreen_potass
1307.506849
vioscreen_procdate
10/28/15
vioscreen_proline
2.36334262
vioscreen_protanim
28.67958851
vioscreen_protein
41.54268247
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
12.86325851
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
662.0
vioscreen_retinol
293.8128853
vioscreen_rgrain
2.475315042
vioscreen_ribofla
1.248218944
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.20384000000000002
vioscreen_satoco
0.0
vioscreen_selenium
82.93572881
vioscreen_serine
2.0816984830000003
vioscreen_sfa100
0.152356156
vioscreen_sfa120
0.32863015
vioscreen_sfa140
0.679616599
vioscreen_sfa160
7.37449299
vioscreen_sfa170
0.055232887
vioscreen_sfa180
2.77216429
vioscreen_sfa200
0.11558903699999999
vioscreen_sfa220
0.109506853
vioscreen_sfa40
0.15772603699999999
vioscreen_sfa60
0.0940548
vioscreen_sfa80
0.081068494
vioscreen_sfatot
11.98315229
vioscreen_sodium
1692.159932
vioscreen_sorbitol
0.9298629970000001
vioscreen_srvid
16699.0
vioscreen_starch
61.10427012
vioscreen_started
1/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.75909407
vioscreen_sweet_servings
0.29589
vioscreen_tagatose
0.11745205199999999
vioscreen_tfa161t
0.014712328
vioscreen_tfa181t
0.765808189
vioscreen_tfa182t
0.144136978
vioscreen_tgrain
4.785616773
vioscreen_thiamin
0.93786295
vioscreen_threonin
1.6771506109999998
vioscreen_time
32.0
vioscreen_totaltfa
0.931150755
vioscreen_totcla
0.046986306
vioscreen_totfolat
234.3259418
vioscreen_totsugar
44.44605897
vioscreen_tryptoph
0.447424651
vioscreen_tyrosine
1.388849295
vioscreen_user_id
16699.0
vioscreen_v_drkgr
0.12460272800000001
vioscreen_v_orange
0.09841095400000001
vioscreen_v_other
0.431178054
vioscreen_v_potato
0.076958905
vioscreen_v_starcy
0.022876712999999996
vioscreen_v_tomato
0.003890411
vioscreen_v_total
0.7579452720000001
vioscreen_valine
2.13876719
vioscreen_veg5_day
1.3
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
1.5
vioscreen_visit
1.0
vioscreen_vita_iu
5015.624658
vioscreen_vita_rae
495.6484161
vioscreen_vita_re
697.4840325
vioscreen_vitb12
3.767397528
vioscreen_vitb6
1.308219345
vioscreen_vitc
45.23459974
vioscreen_vitd
4.6608221180000005
vioscreen_vitd2
0.001479452
vioscreen_vitd3
4.659397407
vioscreen_vitd_iu
186.4328847
vioscreen_vite_iu
9.057563007999999
vioscreen_vitk
85.63393622
vioscreen_water
1551.214041
vioscreen_weight
Not provided
vioscreen_wgrain
2.310273973
vioscreen_whole_grain_servings
2.17362
vioscreen_xylitol
0.020849317
vioscreen_zinc
5.1540269830000005
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
76.0
weight_change
Not provided
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)