American Gut Project; 10317.000026141
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633145
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026141
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26141
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
19.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/07/2015
collection month
April
collection season
Spring
collection time
15:30
collection_timestamp
2015-04-07 15:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
3.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ba06a70cc8af9b3cce9dd0efea08bbc0a5b3a7342d611dd48658c75773d480a0e28c9e4291a76ff92fd0373e332451ee9f15040811e1bdcaad7d390fab121c55
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.3
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-71.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026141
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
7cd73f2de3b0294d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.157890414
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.83435627
vioscreen_addsugar
65.1007973
vioscreen_adsugtot
58.066160100000005
vioscreen_age
215.0
vioscreen_alanine
4.494000495
vioscreen_alcohol
2.466328827
vioscreen_alcohol_servings
0.15789
vioscreen_alphacar
9119.834247
vioscreen_alphtoce
24.42621468
vioscreen_alphtoco
22.44498074
vioscreen_arginine
5.669205506
vioscreen_ash
33.37980522
vioscreen_aspartam
162.7813142
vioscreen_aspartic
10.23547999
vioscreen_avcarb
345.4916952
vioscreen_bcodeid
Not provided
vioscreen_betacar
33501.25753
vioscreen_betacryp
326.9251284
vioscreen_betaine
189.301905
vioscreen_betatoco
0.602520418
vioscreen_biochana
0.041397259
vioscreen_bmi
Not provided
vioscreen_caffeine
238.065625
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
3.06156
vioscreen_calcium_servings
5.82249
vioscreen_calories
2864.824315
vioscreen_carbo
405.1982877
vioscreen_cholest
141.7777825
vioscreen_choline
499.2169949
vioscreen_clac9t11
0.051726025
vioscreen_clat10c12
0.012876712
vioscreen_copper
2.672986174
vioscreen_coumest
0.06671233
vioscreen_cystine
1.327725763
vioscreen_d_cheese
0.07797260000000002
vioscreen_d_milk
2.385835663
vioscreen_d_tot_soym
3.061561564
vioscreen_d_total
3.061561564
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
2.466821624
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.2104117619999997
vioscreen_discfat_oil
62.14549444
vioscreen_discfat_sol
23.05331764
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0027123290000000003
vioscreen_f_citmlb
0.288739724
vioscreen_f_nj_citmlb
0.285589035
vioscreen_f_nj_other
1.6953148409999999
vioscreen_f_nj_total
1.980931279
vioscreen_f_other
1.6953148409999999
vioscreen_f_total
1.984082031
vioscreen_fat
104.4387735
vioscreen_fiber
59.53949593
vioscreen_fibh2o
13.747317800000001
vioscreen_fibinso
45.75845997
vioscreen_finished
4/7/15
vioscreen_fish_servings
1.54096
vioscreen_fol_deqv
677.0387413999999
vioscreen_fol_nat
579.9498288
vioscreen_fol_syn
57.09401755
vioscreen_formontn
0.007643835999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.0
vioscreen_fructose
31.15481593
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.3194794119999997
vioscreen_g_total
7.162521404
vioscreen_g_whl
4.8430413230000005
vioscreen_galactos
0.905424688
vioscreen_gammtoco
15.82775043
vioscreen_gender
false
vioscreen_genistn
3.46498689
vioscreen_glac
158.6545163
vioscreen_gltc
181.09098889999999
vioscreen_glucose
32.71469927
vioscreen_glutamic
19.71794868
vioscreen_glycine
3.73835583
vioscreen_glycitn
0.826767177
vioscreen_grams
4102.585274
vioscreen_hei2010_dairy
8.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.3
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
87.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.3
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.5
vioscreen_hei_score
86.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.573945513
vioscreen_inositol
0.17443835100000002
vioscreen_iron
22.85238388
vioscreen_isoleuc
4.428355763
vioscreen_isomalt
0.0
vioscreen_joules
11986.41644
vioscreen_juice_servings
0.00636
vioscreen_lactitol
0.0
vioscreen_lactose
37.65517979999999
vioscreen_legumes
1.027506789
vioscreen_leucine
7.827150444
vioscreen_line_gi
903.1993151
vioscreen_low_fat_dairy_serving
2.89819
vioscreen_lutzeax
19655.54247
vioscreen_lycopene
8234.977397
vioscreen_lysine
6.341479827000001
vioscreen_m_egg
0.32424657100000004
vioscreen_m_fish_hi
0.45221917100000003
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.0
vioscreen_m_meat
0.184821915
vioscreen_m_mpf
1.2289588409999999
vioscreen_m_nutsd
2.226876706
vioscreen_m_organ
0.0
vioscreen_m_poult
0.16599999
vioscreen_m_soy
0.10468492900000001
vioscreen_magnes
755.0380137
vioscreen_maltitol
0.0
vioscreen_maltose
3.3401096289999996
vioscreen_mangan
8.852549765
vioscreen_mannitol
0.942356225
vioscreen_methhis3
4.69942443
vioscreen_methion
1.915287718
vioscreen_mfa141
0.018904111
vioscreen_mfa161
0.83709583
vioscreen_mfa181
44.11389394
vioscreen_mfa201
0.514547855
vioscreen_mfa221
0.07493151299999999
vioscreen_mfatot
45.72041417
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
22.34237746
vioscreen_nccglbr
255.7677654
vioscreen_nccglgr
178.8908283
vioscreen_niacin
28.08202322
vioscreen_niacineq
47.58287671
vioscreen_nitrogen
16.63353489
vioscreen_non_fried_fish_servings
1.54096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.873808393
vioscreen_oxalic
792.6592466
vioscreen_oxalicm
792.9784247
vioscreen_pantothe
8.525725064
vioscreen_pectins
9.240574165
vioscreen_pfa182
23.93852205
vioscreen_pfa183
2.660164611
vioscreen_pfa184
0.015452054
vioscreen_pfa204
0.048876712999999995
vioscreen_pfa205
0.055917818
vioscreen_pfa225
0.020767123999999998
vioscreen_pfa226
0.121808217
vioscreen_pfatot
26.91156625
vioscreen_phenylal
4.81956135
vioscreen_phosphor
2289.9770550000003
vioscreen_phytic
1704.8058219999998
vioscreen_pinitol
0.017726029
vioscreen_potass
6264.158219
vioscreen_procdate
10/28/15
vioscreen_proline
6.518683781
vioscreen_protanim
38.991422299999996
vioscreen_protein
101.84804150000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
62.84803082
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
492.0
vioscreen_retinol
472.0381421
vioscreen_rgrain
2.1681918209999997
vioscreen_ribofla
3.0120819510000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.0809
vioscreen_satoco
0.22758904
vioscreen_selenium
137.7026648
vioscreen_serine
5.261753197
vioscreen_sfa100
0.404520489
vioscreen_sfa120
1.29953421
vioscreen_sfa140
1.51356151
vioscreen_sfa160
13.94619141
vioscreen_sfa170
0.080904132
vioscreen_sfa180
5.167562406
vioscreen_sfa200
0.3850958
vioscreen_sfa220
0.459671271
vioscreen_sfa40
0.361068558
vioscreen_sfa60
0.202794511
vioscreen_sfa80
0.27501371199999997
vioscreen_sfatot
24.45862853
vioscreen_sodium
5763.189726
vioscreen_sorbitol
1.8518357369999998
vioscreen_srvid
18457.0
vioscreen_starch
140.19517340000002
vioscreen_started
4/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.08575342300000001
vioscreen_sucrlose
0.0
vioscreen_sucrose
69.92401541
vioscreen_sweet_servings
0.95342
vioscreen_tagatose
5.6667674439999995
vioscreen_tfa161t
0.019753425
vioscreen_tfa181t
1.0921096590000001
vioscreen_tfa182t
0.33553422899999996
vioscreen_tgrain
7.0425199329999995
vioscreen_thiamin
2.138137274
vioscreen_threonin
4.034794387
vioscreen_time
19.0
vioscreen_totaltfa
1.513260013
vioscreen_totcla
0.064849321
vioscreen_totfolat
637.043536
vioscreen_totsugar
177.2260488
vioscreen_tryptoph
1.169397223
vioscreen_tyrosine
3.5593696489999997
vioscreen_user_id
18457.0
vioscreen_v_drkgr
1.675397314
vioscreen_v_orange
1.859178015
vioscreen_v_other
2.097178169
vioscreen_v_potato
0.261808212
vioscreen_v_starcy
0.394876726
vioscreen_v_tomato
0.508356173
vioscreen_v_total
6.796904431000001
vioscreen_valine
5.439178216
vioscreen_veg5_day
13.1
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
13.5
vioscreen_visit
1.0
vioscreen_vita_iu
65282.695889999995
vioscreen_vita_rae
3657.42637
vioscreen_vita_re
6842.813698999999
vioscreen_vitb12
4.820876698999999
vioscreen_vitb6
3.086821757
vioscreen_vitc
262.5013699
vioscreen_vitd
9.408739565
vioscreen_vitd2
0.0
vioscreen_vitd3
9.408739565
vioscreen_vitd_iu
376.3495826
vioscreen_vite_iu
33.52649294
vioscreen_vitk
883.5042808000001
vioscreen_water
3477.9647259999997
vioscreen_weight
Not provided
vioscreen_wgrain
4.874328781
vioscreen_whole_grain_servings
4.84304
vioscreen_xylitol
0.07246575599999999
vioscreen_zinc
18.95657641
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
51.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily