American Gut Project; 10317.000033717
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634368
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033717
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033717
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
22.96
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
09/10/2015
collection month
September
collection season
Fall
collection time
07:00
collection_timestamp
2015-09-10 07:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
New England
elevation
3.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
edb06de0f876e1c9376111e970799eb5e426b6277ed685bb452c0ea9ded580d669ec2c65e64ee2a5ea6faf9f01af5f06b55ababc2a3573ffd58ac73ecbadc5a0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000033717
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
744b8ccec0eb1b76
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.714328714
vioscreen_addsugar
9.740822319
vioscreen_adsugtot
8.895753291
vioscreen_age
215.0
vioscreen_alanine
6.381260032999999
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
753.5724315
vioscreen_alphtoce
26.32394585
vioscreen_alphtoco
24.90451359
vioscreen_arginine
8.204903547999999
vioscreen_ash
27.36920484
vioscreen_aspartam
0.0
vioscreen_aspartic
12.51213881
vioscreen_avcarb
111.5851348
vioscreen_bcodeid
Not provided
vioscreen_betacar
9435.969178
vioscreen_betacryp
567.3887414
vioscreen_betaine
82.37339469
vioscreen_betatoco
0.581972598
vioscreen_biochana
0.02909589
vioscreen_bmi
Not provided
vioscreen_caffeine
0.014739726000000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.18126
vioscreen_calcium_servings
2.27808
vioscreen_calories
2210.874486
vioscreen_carbo
146.33393619999998
vioscreen_cholest
958.6556507000001
vioscreen_choline
994.7702911
vioscreen_clac9t11
0.073068488
vioscreen_clat10c12
0.018164384
vioscreen_copper
2.327698423
vioscreen_coumest
0.009287670999999999
vioscreen_cystine
1.657041116
vioscreen_d_cheese
0.015342465
vioscreen_d_milk
0.14947945599999998
vioscreen_d_tot_soym
0.181260284
vioscreen_d_total
0.181260284
vioscreen_d_yogurt
0.016438356
vioscreen_daidzein
0.079616442
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.963643782
vioscreen_discfat_oil
52.17328767
vioscreen_discfat_sol
32.06405982
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0019178079999999998
vioscreen_f_citmlb
1.997123154
vioscreen_f_nj_citmlb
1.968273926
vioscreen_f_nj_other
1.9790958769999998
vioscreen_f_nj_total
3.947369301
vioscreen_f_other
1.9790958769999998
vioscreen_f_total
3.976218696
vioscreen_fat
137.0562607
vioscreen_fiber
34.75048962
vioscreen_fibh2o
9.717915909
vioscreen_fibinso
25.18632813
vioscreen_finished
9/3/15
vioscreen_fish_servings
9.02442
vioscreen_fol_deqv
595.9919949
vioscreen_fol_nat
582.4754709
vioscreen_fol_syn
7.947398063
vioscreen_formontn
0.011753425
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
8.0
vioscreen_fructose
25.11131207
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.407945231
vioscreen_g_total
0.407945231
vioscreen_g_whl
0.0
vioscreen_galactos
0.273945158
vioscreen_gammtoco
11.65356245
vioscreen_gender
false
vioscreen_genistn
0.041397259
vioscreen_glac
34.81471265
vioscreen_gltc
40.71578286
vioscreen_glucose
25.26090539
vioscreen_glutamic
19.13101456
vioscreen_glycine
5.603589536
vioscreen_glycitn
0.005205479
vioscreen_grams
4348.131507
vioscreen_hei2010_dairy
0.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.4
vioscreen_hei_score
64.6
vioscreen_hei_sodium
0.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.134438209
vioscreen_inositol
0.062547945
vioscreen_iron
12.89452189
vioscreen_isoleuc
5.3640822319999995
vioscreen_isomalt
0.0
vioscreen_joules
9250.295205
vioscreen_juice_servings
0.05778
vioscreen_lactitol
0.0
vioscreen_lactose
1.863671373
vioscreen_legumes
0.010876712
vioscreen_leucine
8.935151568
vioscreen_line_gi
278.1112372
vioscreen_low_fat_dairy_serving
0.01644
vioscreen_lutzeax
14948.7
vioscreen_lycopene
12115.86575
vioscreen_lysine
8.669945286
vioscreen_m_egg
4.015890545
vioscreen_m_fish_hi
3.6476435410000003
vioscreen_m_fish_lo
1.495123375
vioscreen_m_frank
0.063342468
vioscreen_m_meat
0.483506838
vioscreen_m_mpf
7.906219900000001
vioscreen_m_nutsd
4.3528219980000005
vioscreen_m_organ
0.135369863
vioscreen_m_poult
2.081232944
vioscreen_m_soy
0.0018630139999999999
vioscreen_magnes
489.4732449
vioscreen_maltitol
0.0
vioscreen_maltose
0.526712329
vioscreen_mangan
3.439917996
vioscreen_mannitol
0.621917808
vioscreen_methhis3
26.90608412
vioscreen_methion
2.971315483
vioscreen_mfa141
0.043671234
vioscreen_mfa161
2.817315256
vioscreen_mfa181
64.26232877
vioscreen_mfa201
1.079315018
vioscreen_mfa221
0.6342466170000001
vioscreen_mfatot
69.02052119
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
24.90451359
vioscreen_nccglbr
74.58558968
vioscreen_nccglgr
52.16786173
vioscreen_niacin
30.84966556
vioscreen_niacineq
53.71748181
vioscreen_nitrogen
19.56520628
vioscreen_non_fried_fish_servings
9.02442
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.0705476110000003
vioscreen_oxalic
733.5321062
vioscreen_oxalicm
779.2499144
vioscreen_pantothe
9.790794895
vioscreen_pectins
9.601890919
vioscreen_pfa182
21.00624465
vioscreen_pfa183
1.191917691
vioscreen_pfa184
0.145150684
vioscreen_pfa204
0.490109587
vioscreen_pfa205
0.487013684
vioscreen_pfa225
0.187917798
vioscreen_pfa226
1.0597259940000001
vioscreen_pfatot
24.78758562
vioscreen_phenylal
5.2121645569999995
vioscreen_phosphor
1620.546747
vioscreen_phytic
735.7941781000001
vioscreen_pinitol
0.000191781
vioscreen_potass
4765.222945
vioscreen_procdate
10/28/15
vioscreen_proline
5.076328393
vioscreen_protanim
85.79084974
vioscreen_protein
119.83233090000002
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.04112265
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
123.0
vioscreen_retinol
764.5016267000001
vioscreen_rgrain
0.276493146
vioscreen_ribofla
2.412520568
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.70696
vioscreen_satoco
0.0
vioscreen_selenium
186.47795380000002
vioscreen_serine
5.972301076
vioscreen_sfa100
0.292082214
vioscreen_sfa120
0.41271232700000005
vioscreen_sfa140
1.5010685330000002
vioscreen_sfa160
20.73235633
vioscreen_sfa170
0.133397257
vioscreen_sfa180
6.244027585
vioscreen_sfa200
0.453342511
vioscreen_sfa220
0.723369776
vioscreen_sfa40
0.350273989
vioscreen_sfa60
0.215205488
vioscreen_sfa80
0.139643839
vioscreen_sfatot
31.63772474
vioscreen_sodium
4348.497945
vioscreen_sorbitol
0.8866849720000001
vioscreen_srvid
20615.0
vioscreen_starch
17.05167086
vioscreen_started
9/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.93030554
vioscreen_sweet_servings
0.06575
vioscreen_tagatose
0.15616438400000002
vioscreen_tfa161t
0.028821914
vioscreen_tfa181t
1.631917875
vioscreen_tfa182t
0.18063015899999998
vioscreen_tgrain
0.276493146
vioscreen_thiamin
1.28846561
vioscreen_threonin
4.847972295
vioscreen_time
37.0
vioscreen_totaltfa
1.850273906
vioscreen_totcla
0.092712319
vioscreen_totfolat
590.4228596
vioscreen_totsugar
78.93129281
vioscreen_tryptoph
1.374465733
vioscreen_tyrosine
4.092136665
vioscreen_user_id
20615.0
vioscreen_v_drkgr
0.972739776
vioscreen_v_orange
0.09750685
vioscreen_v_other
1.741534507
vioscreen_v_potato
0.040739726000000004
vioscreen_v_starcy
0.017342466
vioscreen_v_tomato
1.171588971
vioscreen_v_total
4.041451734
vioscreen_valine
5.982903467000001
vioscreen_veg5_day
10.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.1
vioscreen_visit
1.0
vioscreen_vita_iu
19375.98767
vioscreen_vita_rae
1605.87637
vioscreen_vita_re
2447.2453769999997
vioscreen_vitb12
9.522849556
vioscreen_vitb6
3.309452255
vioscreen_vitc
307.4878853
vioscreen_vitd
21.79712249
vioscreen_vitd2
0.0
vioscreen_vitd3
21.79712249
vioscreen_vitd_iu
871.8848993999999
vioscreen_vite_iu
37.16967038
vioscreen_vitk
556.6368579
vioscreen_water
3943.4520549999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.041726031000000004
vioscreen_zinc
11.34038287
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never