10317.000033709; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634367
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000033709
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000033709
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
33.96
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-14
collection month
September
collection season
Fall
collection time
09:25
collection_timestamp
2015-09-14 09:25
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
236.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
7901c2031dc7317271ce38377bf46b9273c059f3da5918de247092b12d7aabdfbe7e487eaf1c7d65595917f34069afb1dd5e82ca6cf7e2d0caab99a41b06260b
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
41.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-85.8
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000033709
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IN
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
e3deaa1c47803e3c
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.31120549
vioscreen_a_cal
40.39413795
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.11369863
vioscreen_addsugar
43.07739726
vioscreen_adsugtot
37.95633027
vioscreen_age
215.0
vioscreen_alanine
2.774931273
vioscreen_alcohol
4.539972509
vioscreen_alcohol_servings
0.31121
vioscreen_alphacar
640.8025257
vioscreen_alphtoce
6.899971907
vioscreen_alphtoco
5.9735351560000005
vioscreen_arginine
2.9649310389999997
vioscreen_ash
14.38529003
vioscreen_aspartam
0.0
vioscreen_aspartic
5.378793878
vioscreen_avcarb
148.8727312
vioscreen_bcodeid
Not provided
vioscreen_betacar
2234.022432
vioscreen_betacryp
120.5713185
vioscreen_betaine
95.69140625
vioscreen_betatoco
0.283808188
vioscreen_biochana
0.0038082190000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
201.0494863
vioscreen_calcium
true
vioscreen_calcium_avg
428.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
1.96268
vioscreen_calcium_servings
2.91693
vioscreen_calories
1423.015925
vioscreen_carbo
165.6419092
vioscreen_cholest
168.7649401
vioscreen_choline
265.8447988
vioscreen_clac9t11
0.09145206800000001
vioscreen_clat10c12
0.020602741
vioscreen_copper
0.9753974809999999
vioscreen_coumest
0.026273973
vioscreen_cystine
0.6731232109999999
vioscreen_d_cheese
0.284821915
vioscreen_d_milk
1.301041109
vioscreen_d_tot_soym
1.962684945
vioscreen_d_total
1.962684945
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.030958905
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.862794474
vioscreen_discfat_oil
9.787753505
vioscreen_discfat_sol
30.03060253
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.319232868
vioscreen_f_nj_citmlb
0.314712315
vioscreen_f_nj_other
0.570191726
vioscreen_f_nj_total
0.884931507
vioscreen_f_other
0.570191726
vioscreen_f_total
0.889452122
vioscreen_fat
58.816117299999995
vioscreen_fiber
16.75816032
vioscreen_fibh2o
4.439698603
vioscreen_fibinso
12.36704302
vioscreen_finished
8/29/15
vioscreen_fish_servings
0.57731
vioscreen_fol_deqv
284.178339
vioscreen_fol_nat
227.7536601
vioscreen_fol_syn
33.17093054
vioscreen_formontn
0.001534247
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.8
vioscreen_fructose
9.120574699999999
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.419287611
vioscreen_g_total
3.05073978
vioscreen_g_whl
1.6314518340000002
vioscreen_galactos
0.680027374
vioscreen_gammtoco
7.934904082999999
vioscreen_gender
false
vioscreen_genistn
0.018164384
vioscreen_glac
70.11438356
vioscreen_gltc
76.68767123
vioscreen_glucose
10.06657548
vioscreen_glutamic
11.29736997
vioscreen_glycine
2.3407122890000003
vioscreen_glycitn
0.0
vioscreen_grams
2729.929623
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
13.1
vioscreen_hei2010_fatty_acids
2.3
vioscreen_hei2010_fruit
3.9
vioscreen_hei2010_greens_beans
2.1
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.8
vioscreen_hei2010_sea_foods_plant_protiens
4.3
vioscreen_hei2010_sodium
6.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
1.9
vioscreen_hei_fruit
3.9
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.7
vioscreen_hei_sat_fat
2.2
vioscreen_hei_score
67.9
vioscreen_hei_sodium
5.2
vioscreen_hei_sol_fat_alc_add_sug
11.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
1.643753512
vioscreen_inositol
0.065205483
vioscreen_iron
7.524905019
vioscreen_isoleuc
2.713123562
vioscreen_isomalt
0.0
vioscreen_joules
5953.9006850000005
vioscreen_juice_servings
0.00907
vioscreen_lactitol
0.0
vioscreen_lactose
23.44860338
vioscreen_legumes
0.0
vioscreen_leucine
4.723726455
vioscreen_line_gi
381.8467038
vioscreen_low_fat_dairy_serving
0.68603
vioscreen_lutzeax
1796.9464039999998
vioscreen_lycopene
1650.0914380000002
vioscreen_lysine
4.212465887
vioscreen_m_egg
0.159068497
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
1.4120274369999999
vioscreen_m_mpf
2.9074793989999996
vioscreen_m_nutsd
0.640767137
vioscreen_m_organ
0.0
vioscreen_m_poult
1.166493121
vioscreen_m_soy
0.0
vioscreen_magnes
286.83533819999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.9899999330000002
vioscreen_mangan
3.773397367
vioscreen_mannitol
0.195315071
vioscreen_methhis3
11.17334252
vioscreen_methion
1.385589014
vioscreen_mfa141
0.108301367
vioscreen_mfa161
1.08013707
vioscreen_mfa181
19.00914892
vioscreen_mfa201
0.212684882
vioscreen_mfa221
0.065205483
vioscreen_mfatot
20.6309878
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
5.9735351560000005
vioscreen_nccglbr
106.8006314
vioscreen_nccglgr
74.70720783
vioscreen_niacin
16.62008241
vioscreen_niacineq
26.92728489
vioscreen_nitrogen
9.685368953
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.215561875
vioscreen_oxalic
140.22452909999998
vioscreen_oxalicm
136.6733519
vioscreen_pantothe
4.783287404
vioscreen_pectins
2.729863248
vioscreen_pfa182
10.2555343
vioscreen_pfa183
1.015917969
vioscreen_pfa184
0.014849315
vioscreen_pfa204
0.08315068099999999
vioscreen_pfa205
0.050821915999999995
vioscreen_pfa225
0.028520548
vioscreen_pfa226
0.10591781800000001
vioscreen_pfatot
11.61057497
vioscreen_phenylal
2.621917808
vioscreen_phosphor
1109.6180650000001
vioscreen_phytic
493.30706339999995
vioscreen_pinitol
0.001232877
vioscreen_potass
2682.163014
vioscreen_procdate
10/28/15
vioscreen_proline
4.141753732
vioscreen_protanim
42.40126284
vioscreen_protein
59.78822774
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.3808781
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
162.0
vioscreen_retinol
322.3961473
vioscreen_rgrain
1.333698597
vioscreen_ribofla
1.6501643769999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.9103
vioscreen_satoco
0.0
vioscreen_selenium
77.88118579
vioscreen_serine
2.800274073
vioscreen_sfa100
0.54493149
vioscreen_sfa120
1.124027451
vioscreen_sfa140
2.259698737
vioscreen_sfa160
10.999344500000001
vioscreen_sfa170
0.091561639
vioscreen_sfa180
4.7758628530000005
vioscreen_sfa200
0.105452049
vioscreen_sfa220
0.129561625
vioscreen_sfa40
0.597835593
vioscreen_sfa60
0.334739748
vioscreen_sfa80
0.289753451
vioscreen_sfatot
21.56463238
vioscreen_sodium
2016.2291100000002
vioscreen_sorbitol
0.39087670700000005
vioscreen_srvid
20536.0
vioscreen_starch
51.98709332
vioscreen_started
8/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
37.39350653
vioscreen_sweet_servings
1.02091
vioscreen_tagatose
3.7026577880000002
vioscreen_tfa161t
0.034684931
vioscreen_tfa181t
1.422082185
vioscreen_tfa182t
0.289780792
vioscreen_tgrain
3.16646578
vioscreen_thiamin
0.917452292
vioscreen_threonin
2.295506642
vioscreen_time
18.0
vioscreen_totaltfa
1.79693152
vioscreen_totcla
0.112273982
vioscreen_totfolat
260.9245077
vioscreen_totsugar
83.85101134
vioscreen_tryptoph
0.619123234
vioscreen_tyrosine
2.181123248
vioscreen_user_id
20536.0
vioscreen_v_drkgr
0.116821916
vioscreen_v_orange
0.104821924
vioscreen_v_other
0.646575301
vioscreen_v_potato
0.478465752
vioscreen_v_starcy
0.430191751
vioscreen_v_tomato
0.250109612
vioscreen_v_total
2.027040915
vioscreen_valine
3.206411534
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
5432.9
vioscreen_vita_rae
540.2893836000001
vioscreen_vita_re
758.1809932
vioscreen_vitb12
3.83062995
vioscreen_vitb6
1.327890391
vioscreen_vitc
70.51559289
vioscreen_vitd
5.841259766
vioscreen_vitd2
0.0
vioscreen_vitd3
5.841259766
vioscreen_vitd_iu
233.6503906
vioscreen_vite_iu
8.898494355
vioscreen_vitk
75.40656571
vioscreen_water
2441.195034
vioscreen_weight
Not provided
vioscreen_wgrain
1.832767183
vioscreen_whole_grain_servings
1.63145
vioscreen_xylitol
0.022191782
vioscreen_zinc
8.992574781
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
104.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)