American Gut Project; 10317.000022518
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632510
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:40:59Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022518
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22518
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1980.0
bmi
22.67
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Five or more
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2014-12-20
collection month
December
collection season
Winter
collection time
12:30
collection_timestamp
2014-12-20 12:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
19.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1a5d1ddb00edfc0c496f4c32691079ca31ac3b02dbad1cc984f65c6883d7f0385daaef92610244f0f6fd363baab97ac23c8331c5e7d420f65246321dc452fbd2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022518
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
0d471aee1f09d357
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.000273973
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.214657802
vioscreen_addsugar
54.47813570000001
vioscreen_adsugtot
48.1028735
vioscreen_age
214.0
vioscreen_alanine
3.149369917
vioscreen_alcohol
0.01490411
vioscreen_alcohol_servings
0.00027
vioscreen_alphacar
1781.7897260000002
vioscreen_alphtoce
16.37933968
vioscreen_alphtoco
14.40862987
vioscreen_arginine
4.3019180089999995
vioscreen_ash
16.41904029
vioscreen_aspartam
0.0
vioscreen_aspartic
6.548245532
vioscreen_avcarb
163.7804259
vioscreen_bcodeid
Not provided
vioscreen_betacar
10966.217120000001
vioscreen_betacryp
62.57170377
vioscreen_betaine
86.3395655
vioscreen_betatoco
0.6032602810000001
vioscreen_biochana
0.00630137
vioscreen_bmi
Not provided
vioscreen_caffeine
24.74150792
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
0.21796999999999997
vioscreen_calcium_servings
2.42493
vioscreen_calories
1791.565925
vioscreen_carbo
193.2688998
vioscreen_cholest
238.43471749999998
vioscreen_choline
369.2215325
vioscreen_clac9t11
0.01479452
vioscreen_clat10c12
0.005369863000000001
vioscreen_copper
1.7730413569999999
vioscreen_coumest
0.204191798
vioscreen_cystine
0.837945306
vioscreen_d_cheese
0.0009315069999999999
vioscreen_d_milk
0.217041099
vioscreen_d_tot_soym
1.3425205180000002
vioscreen_d_total
0.21797259600000002
vioscreen_d_yogurt
0.0
vioscreen_daidzein
16.7812005
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.651178229
vioscreen_discfat_oil
52.40115047
vioscreen_discfat_sol
10.28134297
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002657534
vioscreen_f_citmlb
0.7363287940000001
vioscreen_f_nj_citmlb
0.7281095320000001
vioscreen_f_nj_other
1.9138083259999998
vioscreen_f_nj_total
2.641917942
vioscreen_f_other
1.9138083259999998
vioscreen_f_total
2.650136953
vioscreen_fat
92.30605736
vioscreen_fiber
29.45407213
vioscreen_fibh2o
7.826959145
vioscreen_fibinso
21.70994756
vioscreen_finished
12/20/14
vioscreen_fish_servings
0.97231
vioscreen_fol_deqv
425.1652397
vioscreen_fol_nat
349.23114300000003
vioscreen_fol_syn
44.65824593
vioscreen_formontn
0.001780822
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.04381
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.3
vioscreen_fructose
23.2495853
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.163260264
vioscreen_g_total
2.051479559
vioscreen_g_whl
0.888219212
vioscreen_galactos
0.148027383
vioscreen_gammtoco
16.82284889
vioscreen_gender
false
vioscreen_genistn
19.41435279
vioscreen_glac
78.50090968
vioscreen_gltc
88.17871361
vioscreen_glucose
23.37315122
vioscreen_glutamic
11.24846559
vioscreen_glycine
2.904328647
vioscreen_glycitn
2.782246462
vioscreen_grams
2604.627055
vioscreen_hei2010_dairy
5.8
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.0
vioscreen_hei_score
83.1
vioscreen_hei_sodium
5.7
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
1.720657976
vioscreen_inositol
0.143041093
vioscreen_iron
11.76159033
vioscreen_isoleuc
2.820000134
vioscreen_isomalt
0.0
vioscreen_joules
7495.911644
vioscreen_juice_servings
0.016380000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
3.0023012760000003
vioscreen_legumes
0.047397258
vioscreen_leucine
4.664684557
vioscreen_line_gi
433.25
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
7594.089726
vioscreen_lycopene
2854.547603
vioscreen_lysine
4.110410758
vioscreen_m_egg
0.8388218709999999
vioscreen_m_fish_hi
0.386191757
vioscreen_m_fish_lo
0.16789040800000002
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
0.182575341
vioscreen_m_mpf
2.856602833
vioscreen_m_nutsd
2.342000047
vioscreen_m_organ
0.0
vioscreen_m_poult
2.110849375
vioscreen_m_soy
1.810192035
vioscreen_magnes
356.77585619999996
vioscreen_maltitol
0.0
vioscreen_maltose
5.857944937999999
vioscreen_mangan
4.0245204139999995
vioscreen_mannitol
0.351945182
vioscreen_methhis3
11.34189052
vioscreen_methion
1.315013645
vioscreen_mfa141
0.016547945
vioscreen_mfa161
1.153972553
vioscreen_mfa181
37.98742509
vioscreen_mfa201
0.449616398
vioscreen_mfa221
0.081506855
vioscreen_mfatot
40.0133963
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.40862987
vioscreen_nccglbr
136.3765839
vioscreen_nccglgr
95.39371789
vioscreen_niacin
19.95093108
vioscreen_niacineq
32.57191781
vioscreen_nitrogen
10.92169909
vioscreen_non_fried_fish_servings
0.97231
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.555315242
vioscreen_oxalic
276.4837543
vioscreen_oxalicm
286.0473245
vioscreen_pantothe
4.996739218
vioscreen_pectins
6.139944751
vioscreen_pfa182
22.526410000000002
vioscreen_pfa183
2.31202727
vioscreen_pfa184
0.015479451000000002
vioscreen_pfa204
0.164410954
vioscreen_pfa205
0.054739725
vioscreen_pfa225
0.034
vioscreen_pfa226
0.139643829
vioscreen_pfatot
25.58863442
vioscreen_phenylal
2.820356312
vioscreen_phosphor
1032.0914380000002
vioscreen_phytic
1059.33536
vioscreen_pinitol
0.098410964
vioscreen_potass
3057.421233
vioscreen_procdate
10/28/15
vioscreen_proline
3.177368833
vioscreen_protanim
31.11189266
vioscreen_protein
66.09537136
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.98545323
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
678.0
vioscreen_retinol
285.95856160000005
vioscreen_rgrain
1.008849262
vioscreen_ribofla
1.58243843
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.0446299999999997
vioscreen_satoco
0.0
vioscreen_selenium
93.51921019
vioscreen_serine
3.0813700639999997
vioscreen_sfa100
0.129698641
vioscreen_sfa120
0.544438318
vioscreen_sfa140
0.6889589070000001
vioscreen_sfa160
12.37885006
vioscreen_sfa170
0.04635617
vioscreen_sfa180
4.8473151219999995
vioscreen_sfa200
0.314219164
vioscreen_sfa220
0.426602675
vioscreen_sfa40
0.10364383
vioscreen_sfa60
0.041041097
vioscreen_sfa80
0.102273978
vioscreen_sfatot
19.84526033
vioscreen_sodium
2442.424486
vioscreen_sorbitol
1.159999983
vioscreen_srvid
16478.0
vioscreen_starch
41.78962168
vioscreen_started
12/20/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.68728596
vioscreen_sweet_servings
0.74271
vioscreen_tagatose
3.1944657000000003
vioscreen_tfa161t
0.010328766999999999
vioscreen_tfa181t
0.79463016
vioscreen_tfa182t
0.38876710700000006
vioscreen_tgrain
2.217233151
vioscreen_thiamin
0.934219235
vioscreen_threonin
2.460684831
vioscreen_time
41.0
vioscreen_totaltfa
1.215369823
vioscreen_totcla
0.02109589
vioscreen_totfolat
393.8894264
vioscreen_totsugar
100.9200985
vioscreen_tryptoph
0.758684968
vioscreen_tyrosine
2.122547557
vioscreen_user_id
16478.0
vioscreen_v_drkgr
0.862630097
vioscreen_v_orange
0.46663015700000005
vioscreen_v_other
0.767232817
vioscreen_v_potato
0.051972606
vioscreen_v_starcy
0.041917806
vioscreen_v_tomato
0.17945207600000002
vioscreen_v_total
2.369863181
vioscreen_valine
3.1110960239999996
vioscreen_veg5_day
5.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.7
vioscreen_visit
1.0
vioscreen_vita_iu
20763.99315
vioscreen_vita_rae
1276.6595029999999
vioscreen_vita_re
2267.35839
vioscreen_vitb12
3.28747893
vioscreen_vitb6
2.156877074
vioscreen_vitc
135.0877676
vioscreen_vitd
6.036795002000001
vioscreen_vitd2
2.899643822
vioscreen_vitd3
3.137150845
vioscreen_vitd_iu
241.47180010000002
vioscreen_vite_iu
21.49351054
vioscreen_vitk
403.8724315
vioscreen_water
2247.9642120000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.208438487
vioscreen_whole_grain_servings
0.8882200000000001
vioscreen_xylitol
0.049205477000000004
vioscreen_zinc
8.244465700000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)