American Gut Project; 10317.000023055
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632620
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:18Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023055
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23055
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
21.03
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
03/11/2015
collection month
March
collection season
Spring
collection time
08:25
collection_timestamp
2015-03-11 08:25
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
9.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
36f76af68b9ec0153ca6b8ffc33021aaa3a882cc0a04149164b4d4d64e711c9eb7c8f601053939b8639ffb67f3853e056b0e10a4d678c4556525d9cccad55c59
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
33.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-118.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Hispanic
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023055
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
faf4e1f63d15dc87
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.29210957600000004
vioscreen_a_cal
38.05860178
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.901479558999999
vioscreen_addsugar
45.60202804
vioscreen_adsugtot
37.77822132
vioscreen_age
215.0
vioscreen_alanine
3.802411307
vioscreen_alcohol
4.471178029
vioscreen_alcohol_servings
0.29211
vioscreen_alphacar
1679.425171
vioscreen_alphtoce
8.386165587999999
vioscreen_alphtoco
7.570656972
vioscreen_arginine
4.475972884
vioscreen_ash
17.17430303
vioscreen_aspartam
0.0
vioscreen_aspartic
7.069508507999999
vioscreen_avcarb
168.14307580000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
7443.830822
vioscreen_betacryp
178.69455269999997
vioscreen_betaine
107.54663959999999
vioscreen_betatoco
0.2392603
vioscreen_biochana
0.016794522
vioscreen_bmi
Not provided
vioscreen_caffeine
357.8120505
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.9226
vioscreen_calcium_servings
2.53507
vioscreen_calories
1473.363699
vioscreen_carbo
195.3637628
vioscreen_cholest
180.82514980000002
vioscreen_choline
323.5701841
vioscreen_clac9t11
0.045315071
vioscreen_clat10c12
0.013232878
vioscreen_copper
1.301260418
vioscreen_coumest
0.241835628
vioscreen_cystine
0.973506896
vioscreen_d_cheese
0.435890428
vioscreen_d_milk
0.112821919
vioscreen_d_tot_soym
1.240411043
vioscreen_d_total
0.9226026559999999
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
3.50887702
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.339287578
vioscreen_discfat_oil
16.94013672
vioscreen_discfat_sol
13.65287618
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000876712
vioscreen_f_citmlb
0.8331507020000001
vioscreen_f_nj_citmlb
0.82939729
vioscreen_f_nj_other
1.480603027
vioscreen_f_nj_total
2.310027491
vioscreen_f_other
1.480603027
vioscreen_f_total
2.313780735
vioscreen_fat
45.91112479
vioscreen_fiber
26.96906839
vioscreen_fibh2o
8.884932176
vioscreen_fibinso
18.11857743
vioscreen_finished
1/12/15
vioscreen_fish_servings
1.5805799999999999
vioscreen_fol_deqv
420.81917810000004
vioscreen_fol_nat
275.7649829
vioscreen_fol_syn
85.29257277
vioscreen_formontn
0.004520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.6
vioscreen_fructose
25.55641053
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.872657755
vioscreen_g_total
3.52989017
vioscreen_g_whl
1.65723275
vioscreen_galactos
0.675205429
vioscreen_gammtoco
6.467972093999999
vioscreen_gender
false
vioscreen_genistn
4.294384097
vioscreen_glac
81.27024829
vioscreen_gltc
91.97127569
vioscreen_glucose
23.37314855
vioscreen_glutamic
13.25756234
vioscreen_glycine
3.448437834
vioscreen_glycitn
0.6219999970000001
vioscreen_grams
3377.6023969999997
vioscreen_hei2010_dairy
6.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
88.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.6
vioscreen_hei_sat_fat
9.8
vioscreen_hei_score
87.2
vioscreen_hei_sodium
3.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
2.098547698
vioscreen_inositol
0.130657541
vioscreen_iron
13.10742321
vioscreen_isoleuc
3.322191379
vioscreen_isomalt
0.0
vioscreen_joules
6164.553425
vioscreen_juice_servings
0.007529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
6.301780554
vioscreen_legumes
0.110876716
vioscreen_leucine
5.737588961
vioscreen_line_gi
421.5325771000001
vioscreen_low_fat_dairy_serving
0.70633
vioscreen_lutzeax
2891.121575
vioscreen_lycopene
2422.128767
vioscreen_lysine
5.21095857
vioscreen_m_egg
0.323972603
vioscreen_m_fish_hi
0.47383560799999996
vioscreen_m_fish_lo
0.426931512
vioscreen_m_frank
0.271753431
vioscreen_m_meat
2.497725981
vioscreen_m_mpf
4.743972737
vioscreen_m_nutsd
1.174575346
vioscreen_m_organ
0.0
vioscreen_m_poult
1.073808226
vioscreen_m_soy
0.35602738899999997
vioscreen_magnes
318.29199489999996
vioscreen_maltitol
0.0
vioscreen_maltose
4.679232328
vioscreen_mangan
4.849342158
vioscreen_mannitol
0.710520705
vioscreen_methhis3
18.89402825
vioscreen_methion
1.69599994
vioscreen_mfa141
0.056000000999999994
vioscreen_mfa161
0.689753368
vioscreen_mfa181
17.862904
vioscreen_mfa201
0.272383494
vioscreen_mfa221
0.07369864
vioscreen_mfatot
19.10627408
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
7.519067717
vioscreen_nccglbr
129.8149187
vioscreen_nccglgr
90.80555437
vioscreen_niacin
20.53230148
vioscreen_niacineq
33.89101563
vioscreen_nitrogen
12.48208209
vioscreen_non_fried_fish_servings
1.5805799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.283589235
vioscreen_oxalic
193.9779966
vioscreen_oxalicm
207.26849319999997
vioscreen_pantothe
5.544301156
vioscreen_pectins
4.524822078
vioscreen_pfa182
9.095616171
vioscreen_pfa183
1.033945329
vioscreen_pfa184
0.016301369
vioscreen_pfa204
0.111068485
vioscreen_pfa205
0.059753428
vioscreen_pfa225
0.034356164
vioscreen_pfa226
0.14032875
vioscreen_pfatot
10.62197132
vioscreen_phenylal
3.233698429
vioscreen_phosphor
1166.119606
vioscreen_phytic
786.3106164
vioscreen_pinitol
0.023397262999999998
vioscreen_potass
2995.3561640000003
vioscreen_procdate
10/28/15
vioscreen_proline
4.262795644
vioscreen_protanim
49.80909675
vioscreen_protein
76.5869863
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.77221747
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
625.0
vioscreen_retinol
182.13895549999998
vioscreen_rgrain
2.285835496
vioscreen_ribofla
1.898136839
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.2184700000000002
vioscreen_satoco
0.113178086
vioscreen_selenium
101.5202055
vioscreen_serine
3.3343833610000004
vioscreen_sfa100
0.09158905199999999
vioscreen_sfa120
0.17528767
vioscreen_sfa140
0.694027334
vioscreen_sfa160
7.108521511
vioscreen_sfa170
0.029068495
vioscreen_sfa180
2.998986649
vioscreen_sfa200
0.143890402
vioscreen_sfa220
0.21438358300000002
vioscreen_sfa40
0.11284932199999999
vioscreen_sfa60
0.03158904
vioscreen_sfa80
0.042082191
vioscreen_sfatot
11.88057577
vioscreen_sodium
2345.075856
vioscreen_sorbitol
1.060493114
vioscreen_srvid
16852.0
vioscreen_starch
55.47961259
vioscreen_started
1/12/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.27315122
vioscreen_sweet_servings
0.15997999999999998
vioscreen_tagatose
3.099040828
vioscreen_tfa161t
0.021999999
vioscreen_tfa181t
0.842712152
vioscreen_tfa182t
0.17205479199999998
vioscreen_tgrain
4.117945674
vioscreen_thiamin
1.27320565
vioscreen_threonin
2.909095743
vioscreen_time
28.0
vioscreen_totaltfa
1.091808162
vioscreen_totcla
0.059424654
vioscreen_totfolat
361.0565497
vioscreen_totsugar
91.23131421
vioscreen_tryptoph
0.801150638
vioscreen_tyrosine
2.549890471
vioscreen_user_id
16852.0
vioscreen_v_drkgr
0.221287662
vioscreen_v_orange
0.459424664
vioscreen_v_other
0.932849205
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.11857535
vioscreen_v_tomato
0.16161645300000002
vioscreen_v_total
1.8938081919999998
vioscreen_valine
3.8105753019999997
vioscreen_veg5_day
3.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.7
vioscreen_visit
1.0
vioscreen_vita_iu
14560.53014
vioscreen_vita_rae
879.8801369999999
vioscreen_vita_re
1577.621404
vioscreen_vitb12
4.071177694
vioscreen_vitb6
1.8897807080000002
vioscreen_vitc
144.8587971
vioscreen_vitd
4.265123341000001
vioscreen_vitd2
0.8208493590000001
vioscreen_vitd3
3.44432858
vioscreen_vitd_iu
170.60493359999998
vioscreen_vite_iu
11.29553591
vioscreen_vitk
139.57750430000002
vioscreen_water
3049.435959
vioscreen_weight
Not provided
vioscreen_wgrain
1.832082085
vioscreen_whole_grain_servings
1.65723
vioscreen_xylitol
0.044000004
vioscreen_zinc
10.80356245
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily