American Gut Project; 10317.000028789
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633638
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:30:00Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028789
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
67.0
age_corrected
67.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28789
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1948.0
bmi
36.31
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/02/2015
collection month
July
collection season
Summer
collection time
11:00
collection_timestamp
2015-07-02 11:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
22.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6252083f9f6b3c323e5517c96937031fa421491058481ae2b73531b2f1fc649edfbc9017de0a00bb7c6147f9f49c86a3a4e0601e973265bc10bc68a098a59fff
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-77.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000028789
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
DC
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
efc3398dc1a63985
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.234164303
vioscreen_a_cal
392.27418660000006
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.47868552
vioscreen_addsugar
47.13197239
vioscreen_adsugtot
40.96022046
vioscreen_age
215.0
vioscreen_alanine
4.106985766
vioscreen_alcohol
48.76331336
vioscreen_alcohol_servings
3.2341599999999997
vioscreen_alphacar
1020.5426369999999
vioscreen_alphtoce
12.78596961
vioscreen_alphtoco
10.67284956
vioscreen_arginine
4.750903655
vioscreen_ash
25.39372592
vioscreen_aspartam
0.0
vioscreen_aspartic
7.825315042000001
vioscreen_avcarb
226.83309080000004
vioscreen_bcodeid
Not provided
vioscreen_betacar
5120.986301
vioscreen_betacryp
172.8153253
vioscreen_betaine
196.04758130000002
vioscreen_betatoco
0.501561622
vioscreen_biochana
0.008136986
vioscreen_bmi
Not provided
vioscreen_caffeine
253.3724315
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.56151
vioscreen_calcium_servings
3.5600300000000002
vioscreen_calories
2454.289041
vioscreen_carbo
251.6821062
vioscreen_cholest
327.6614298
vioscreen_choline
426.79978600000004
vioscreen_clac9t11
0.152657538
vioscreen_clat10c12
0.031260284
vioscreen_copper
1.5678083859999998
vioscreen_coumest
0.20372602899999998
vioscreen_cystine
1.13290422
vioscreen_d_cheese
0.652684962
vioscreen_d_milk
0.692958884
vioscreen_d_tot_soym
1.561506716
vioscreen_d_total
1.561506716
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.7303013629999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.429452055
vioscreen_discfat_oil
25.75186483
vioscreen_discfat_sol
47.2760274
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
0.48169865
vioscreen_f_nj_citmlb
0.259534256
vioscreen_f_nj_other
0.371506866
vioscreen_f_nj_total
0.6310959070000001
vioscreen_f_other
0.6988219379999999
vioscreen_f_total
1.180547928
vioscreen_fat
89.27045698
vioscreen_fiber
24.83695687
vioscreen_fibh2o
8.974987291
vioscreen_fibinso
15.80397448
vioscreen_finished
7/2/15
vioscreen_fish_servings
3.46173
vioscreen_fol_deqv
531.0921233
vioscreen_fol_nat
270.2113228
vioscreen_fol_syn
153.40789809999998
vioscreen_formontn
0.001287671
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.21918
vioscreen_frt5_day
1.5
vioscreen_frtsumm
2.4
vioscreen_fructose
22.81317691
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.838793945
vioscreen_g_total
6.983863307999999
vioscreen_g_whl
3.14504127
vioscreen_galactos
0.566246555
vioscreen_gammtoco
14.94449246
vioscreen_gender
false
vioscreen_genistn
0.6598355229999999
vioscreen_glac
110.6388271
vioscreen_gltc
120.8164598
vioscreen_glucose
22.07632839
vioscreen_glutamic
17.1486288
vioscreen_glycine
3.554056079
vioscreen_glycitn
0.300328754
vioscreen_grams
4294.920548
vioscreen_hei2010_dairy
4.9
vioscreen_hei2010_empty_calories
12.4
vioscreen_hei2010_fatty_acids
2.8
vioscreen_hei2010_fruit
3.0
vioscreen_hei2010_greens_beans
3.7
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
4.8
vioscreen_hei2010_whole_fruit
3.2
vioscreen_hei2010_whole_grains
8.5
vioscreen_hei_drk_g_org_veg_leg
3.0
vioscreen_hei_fruit
3.0
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.9
vioscreen_hei_non_juice_frt
3.2
vioscreen_hei_oils
8.7
vioscreen_hei_sat_fat
5.4
vioscreen_hei_score
61.1
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
6.8
vioscreen_hei_veg
4.8
vioscreen_hei_whl_grains
4.3
vioscreen_height
Not provided
vioscreen_histidin
2.330192002
vioscreen_inositol
0.31249318600000003
vioscreen_iron
16.21709118
vioscreen_isoleuc
3.843834948
vioscreen_isomalt
0.0
vioscreen_joules
10268.74315
vioscreen_juice_servings
1.09896
vioscreen_lactitol
0.0
vioscreen_lactose
13.0613415
vioscreen_legumes
0.164356159
vioscreen_leucine
6.769889769
vioscreen_line_gi
560.0723031
vioscreen_low_fat_dairy_serving
0.6857300000000001
vioscreen_lutzeax
2568.495205
vioscreen_lycopene
8991.467123
vioscreen_lysine
5.882904805
vioscreen_m_egg
0.6222465620000001
vioscreen_m_fish_hi
0.793150685
vioscreen_m_fish_lo
1.185808239
vioscreen_m_frank
0.350438366
vioscreen_m_meat
1.560739679
vioscreen_m_mpf
4.650438115
vioscreen_m_nutsd
0.682054828
vioscreen_m_organ
0.0
vioscreen_m_poult
0.760301397
vioscreen_m_soy
0.011945207
vioscreen_magnes
399.8789384
vioscreen_maltitol
0.0
vioscreen_maltose
3.976191941
vioscreen_mangan
5.079206911
vioscreen_mannitol
0.233753424
vioscreen_methhis3
16.2706563
vioscreen_methion
1.9751234080000002
vioscreen_mfa141
0.09950684800000001
vioscreen_mfa161
1.2350683759999999
vioscreen_mfa181
27.73741706
vioscreen_mfa201
0.343260235
vioscreen_mfa221
0.126931501
vioscreen_mfatot
29.84424765
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.35715165
vioscreen_nccglbr
178.44309719999998
vioscreen_nccglgr
124.8314747
vioscreen_niacin
23.20855094
vioscreen_niacineq
39.15668611
vioscreen_nitrogen
14.25892819
vioscreen_non_fried_fish_servings
3.03423
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.245040434
vioscreen_oxalic
213.02035530000003
vioscreen_oxalicm
203.4201627
vioscreen_pantothe
6.684575664
vioscreen_pectins
2.885863589
vioscreen_pfa182
17.509396399999996
vioscreen_pfa183
1.775314206
vioscreen_pfa184
0.030986303
vioscreen_pfa204
0.136383569
vioscreen_pfa205
0.13139725800000002
vioscreen_pfa225
0.050219183
vioscreen_pfa226
0.258164351
vioscreen_pfatot
19.9886585
vioscreen_phenylal
3.857999452
vioscreen_phosphor
1560.7474320000001
vioscreen_phytic
863.6142979
vioscreen_pinitol
0.017479452
vioscreen_potass
3568.715411
vioscreen_procdate
10/28/15
vioscreen_proline
5.672109776
vioscreen_protanim
56.63718429
vioscreen_protein
87.8716235
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.23213292
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
335.0
vioscreen_retinol
522.4259418
vioscreen_rgrain
3.8647668289999997
vioscreen_ribofla
2.3220273369999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.57671
vioscreen_satoco
0.7015616640000001
vioscreen_selenium
146.090839
vioscreen_serine
4.0764655130000005
vioscreen_sfa100
0.8092603709999999
vioscreen_sfa120
1.02323274
vioscreen_sfa140
3.204274133
vioscreen_sfa160
16.55523464
vioscreen_sfa170
0.17663014
vioscreen_sfa180
7.308465994
vioscreen_sfa200
0.176191753
vioscreen_sfa220
0.163999981
vioscreen_sfa40
0.990630184
vioscreen_sfa60
0.565890336
vioscreen_sfa80
0.385342491
vioscreen_sfatot
31.78219178
vioscreen_sodium
4270.168836
vioscreen_sorbitol
0.317452062
vioscreen_srvid
20041.0
vioscreen_starch
103.4547196
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.45839041
vioscreen_sweet_servings
0.8164399999999999
vioscreen_tagatose
2.971808447
vioscreen_tfa161t
0.06556165
vioscreen_tfa181t
2.282219205
vioscreen_tfa182t
0.476136968
vioscreen_tgrain
7.398302387
vioscreen_thiamin
1.689698938
vioscreen_threonin
3.3076161839999996
vioscreen_time
40.0
vioscreen_totaltfa
2.917753706
vioscreen_totcla
0.18463011399999998
vioscreen_totfolat
423.61909249999997
vioscreen_totsugar
93.48782106
vioscreen_tryptoph
0.957315105
vioscreen_tyrosine
3.028028682
vioscreen_user_id
20041.0
vioscreen_v_drkgr
0.239041096
vioscreen_v_orange
0.226547952
vioscreen_v_other
1.028219061
vioscreen_v_potato
0.49224661200000003
vioscreen_v_starcy
0.087013694
vioscreen_v_tomato
0.422876729
vioscreen_v_total
2.496136725
vioscreen_valine
4.449260555
vioscreen_veg5_day
3.5
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
11272.05479
vioscreen_vita_rae
998.8996574999999
vioscreen_vita_re
1475.370034
vioscreen_vitb12
5.57665815
vioscreen_vitb6
2.21937005
vioscreen_vitc
130.7147688
vioscreen_vitd
8.343259712
vioscreen_vitd2
0.000849315
vioscreen_vitd3
8.342465752999999
vioscreen_vitd_iu
333.7303885
vioscreen_vite_iu
16.1147675
vioscreen_vitk
135.7567316
vioscreen_water
3828.7489729999998
vioscreen_weight
Not provided
vioscreen_wgrain
3.533560975
vioscreen_whole_grain_servings
3.1450400000000003
vioscreen_xylitol
0.052027402
vioscreen_zinc
13.40596907
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
92.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily