American Gut Project; 10317.000023780
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633096
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023780
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
23780
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
25.64
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/01/2015
collection month
April
collection season
Spring
collection time
00:20
collection_timestamp
2015-04-01 00:20
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Not provided
drinks_per_session
Not provided
economic_region
Not provided
elevation
121.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
181.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
0b443c7b51701d22a6a085a49ae35a64721702de01d766b189a3d0aaa53e44eca690182dde2926b196b69ef54ced39328f1ebd06f22e4562e72a5b3acfb3b9f2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
-36.6
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
Yes
longitude
145.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023780
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
3d66159659d65d34
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.769041297
vioscreen_a_cal
543.1625
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.78775417
vioscreen_addsugar
62.35651755
vioscreen_adsugtot
58.27429902
vioscreen_age
215.0
vioscreen_alanine
2.232575215
vioscreen_alcohol
54.19299015
vioscreen_alcohol_servings
3.76904
vioscreen_alphacar
491.6839041
vioscreen_alphtoce
22.23690069
vioscreen_alphtoco
13.33693012
vioscreen_arginine
2.485452061
vioscreen_ash
18.99298748
vioscreen_aspartam
0.0
vioscreen_aspartic
4.9866301239999995
vioscreen_avcarb
196.3818921
vioscreen_bcodeid
Not provided
vioscreen_betacar
6350.014384
vioscreen_betacryp
74.80920912
vioscreen_betaine
172.7999679
vioscreen_betatoco
0.23295890100000002
vioscreen_biochana
0.006328767
vioscreen_bmi
Not provided
vioscreen_caffeine
184.3018408
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.3103799999999999
vioscreen_calcium_servings
2.42279
vioscreen_calories
2052.5835620000003
vioscreen_carbo
213.20813360000002
vioscreen_cholest
188.85693490000003
vioscreen_choline
358.6201841
vioscreen_clac9t11
0.19693152
vioscreen_clat10c12
0.039095889
vioscreen_copper
1.2028768459999999
vioscreen_coumest
0.133287675
vioscreen_cystine
0.571835662
vioscreen_d_cheese
0.113945206
vioscreen_d_milk
0.6966301490000001
vioscreen_d_tot_soym
1.310383585
vioscreen_d_total
1.310383585
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.15304109800000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.334520565
vioscreen_discfat_oil
15.12920591
vioscreen_discfat_sol
45.21726241
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000109589
vioscreen_f_citmlb
0.032027399
vioscreen_f_nj_citmlb
0.028410959
vioscreen_f_nj_other
0.269232888
vioscreen_f_nj_total
0.297643855
vioscreen_f_other
0.269232888
vioscreen_f_total
0.301260313
vioscreen_fat
72.81778146
vioscreen_fiber
16.80591957
vioscreen_fibh2o
5.6237813039999995
vioscreen_fibinso
11.16759083
vioscreen_finished
3/31/15
vioscreen_fish_servings
1.19654
vioscreen_fol_deqv
620.4899401
vioscreen_fol_nat
255.90629280000002
vioscreen_fol_syn
214.41033819999998
vioscreen_formontn
0.001945206
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.6
vioscreen_fructose
8.525122405
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.583561644
vioscreen_g_total
2.272136866
vioscreen_g_whl
0.6885205409999999
vioscreen_galactos
0.7391507079999999
vioscreen_gammtoco
6.410548212999999
vioscreen_gender
false
vioscreen_genistn
0.070684935
vioscreen_glac
97.35485873
vioscreen_gltc
103.116845
vioscreen_glucose
10.55358853
vioscreen_glutamic
9.620191432999999
vioscreen_glycine
1.9387125090000001
vioscreen_glycitn
0.002876712
vioscreen_grams
3558.32911
vioscreen_hei2010_dairy
4.9
vioscreen_hei2010_empty_calories
1.0
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
1.8
vioscreen_hei2010_protien_foods
3.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
43.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.8
vioscreen_hei2010_whole_grains
2.2
vioscreen_hei_drk_g_org_veg_leg
2.5
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
1.8
vioscreen_hei_meat_beans
7.0
vioscreen_hei_milk
4.9
vioscreen_hei_non_juice_frt
1.8
vioscreen_hei_oils
6.1
vioscreen_hei_sat_fat
0.7
vioscreen_hei_score
38.1
vioscreen_hei_sodium
6.3
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.1
vioscreen_height
Not provided
vioscreen_histidin
1.21293151
vioscreen_inositol
0.079589039
vioscreen_iron
16.17515117
vioscreen_isoleuc
2.062739626
vioscreen_isomalt
0.0
vioscreen_joules
8588.014384
vioscreen_juice_servings
0.0072299999999999994
vioscreen_lactitol
0.0
vioscreen_lactose
16.97772635
vioscreen_legumes
0.0
vioscreen_leucine
3.653424658
vioscreen_line_gi
518.8417808
vioscreen_low_fat_dairy_serving
0.5390699999999999
vioscreen_lutzeax
2806.739384
vioscreen_lycopene
4643.121575
vioscreen_lysine
3.1466847039999997
vioscreen_m_egg
0.300109592
vioscreen_m_fish_hi
0.6286575529999999
vioscreen_m_fish_lo
0.05320548
vioscreen_m_frank
0.6279726210000001
vioscreen_m_meat
0.6509863029999999
vioscreen_m_mpf
1.960821951
vioscreen_m_nutsd
1.3062192320000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.00060274
vioscreen_magnes
328.61140839999996
vioscreen_maltitol
0.0
vioscreen_maltose
3.452137067
vioscreen_mangan
2.8172607419999998
vioscreen_mannitol
0.19391782600000002
vioscreen_methhis3
5.884301422999999
vioscreen_methion
1.040027274
vioscreen_mfa141
0.035808217999999996
vioscreen_mfa161
1.026876706
vioscreen_mfa181
22.36953259
vioscreen_mfa201
0.264630127
vioscreen_mfa221
0.12002740099999999
vioscreen_mfatot
24.09509578
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.666931987999999
vioscreen_nccglbr
130.4424765
vioscreen_nccglgr
91.25811216
vioscreen_niacin
28.7652103
vioscreen_niacineq
36.97476456
vioscreen_nitrogen
8.554793183
vioscreen_non_fried_fish_servings
1.19654
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.140904173
vioscreen_oxalic
217.6662457
vioscreen_oxalicm
233.60961040000004
vioscreen_pantothe
10.33696022
vioscreen_pectins
2.79539728
vioscreen_pfa182
8.431233277999999
vioscreen_pfa183
0.82446565
vioscreen_pfa184
0.027068493
vioscreen_pfa204
0.053178087
vioscreen_pfa205
0.082794519
vioscreen_pfa225
0.032849314
vioscreen_pfa226
0.173835608
vioscreen_pfatot
9.677178537
vioscreen_phenylal
2.14082165
vioscreen_phosphor
1094.205736
vioscreen_phytic
443.0705051
vioscreen_pinitol
0.005315069
vioscreen_potass
3075.419178
vioscreen_procdate
10/28/15
vioscreen_proline
3.545287751
vioscreen_protanim
29.09723084
vioscreen_protein
52.86682363
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.76090539
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
506.0
vioscreen_retinol
480.04880139999995
vioscreen_rgrain
1.648657561
vioscreen_ribofla
2.640493064
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.05022
vioscreen_satoco
14.88074032
vioscreen_selenium
71.26052012
vioscreen_serine
2.330712389
vioscreen_sfa100
1.014301373
vioscreen_sfa120
1.608657461
vioscreen_sfa140
3.574027451
vioscreen_sfa160
15.57254923
vioscreen_sfa170
0.175753429
vioscreen_sfa180
8.411452536
vioscreen_sfa200
0.156191787
vioscreen_sfa220
0.182739718
vioscreen_sfa40
1.154356322
vioscreen_sfa60
0.69758907
vioscreen_sfa80
0.556520603
vioscreen_sfatot
33.28112158
vioscreen_sodium
2655.8222600000004
vioscreen_sorbitol
0.306739724
vioscreen_srvid
18414.0
vioscreen_starch
52.29942209
vioscreen_started
3/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
52.29202162
vioscreen_sweet_servings
1.49863
vioscreen_tagatose
8.08865716
vioscreen_tfa161t
0.035041096
vioscreen_tfa181t
1.7908768330000002
vioscreen_tfa182t
0.5800547979999999
vioscreen_tgrain
2.5819727230000002
vioscreen_thiamin
1.694274066
vioscreen_threonin
1.7812600330000001
vioscreen_time
21.0
vioscreen_totaltfa
2.501671026
vioscreen_totcla
0.236082187
vioscreen_totfolat
470.3164812
vioscreen_totsugar
92.23792808
vioscreen_tryptoph
0.491698633
vioscreen_tyrosine
1.738986081
vioscreen_user_id
18414.0
vioscreen_v_drkgr
0.14917808400000002
vioscreen_v_orange
0.254630144
vioscreen_v_other
0.9769315540000001
vioscreen_v_potato
0.7721370329999999
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.738493117
vioscreen_v_total
2.8913694619999997
vioscreen_valine
2.5644108180000003
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
12655.58356
vioscreen_vita_rae
1032.8223460000002
vioscreen_vita_re
1585.593836
vioscreen_vitb12
6.3422196060000005
vioscreen_vitb6
2.788164531
vioscreen_vitc
89.09424765
vioscreen_vitd
6.053314961
vioscreen_vitd2
0.000219178
vioscreen_vitd3
6.053095569
vioscreen_vitd_iu
242.1325985
vioscreen_vite_iu
24.8067423
vioscreen_vitk
91.3229345
vioscreen_water
3161.970205
vioscreen_weight
Not provided
vioscreen_wgrain
0.933342503
vioscreen_whole_grain_servings
0.68852
vioscreen_xylitol
0.025123287999999997
vioscreen_zinc
14.41024454
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
84.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)