American Gut Project; 10317.000023002
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632606
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023002
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
68.0
age_corrected
68.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23002
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1947.0
bmi
24.13
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
02/09/2015
collection month
February
collection season
Winter
collection time
05:45
collection_timestamp
2015-02-09 05:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
15.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
28cd814b05eaf8db5719284144f01bc1fd3d945832fc867bff10b7909a5b2fba0b3f5317883ecc2988393bb310478699a9aa0cafccd33a8a1fea3cc0cbe39b74
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-121.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000023002
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
5451a8ed53de97b8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.783205801
vioscreen_a_cal
587.0212329
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.589780875
vioscreen_addsugar
12.53679366
vioscreen_adsugtot
11.01060239
vioscreen_age
215.0
vioscreen_alanine
2.1745481730000003
vioscreen_alcohol
73.36792059
vioscreen_alcohol_servings
4.7832099999999995
vioscreen_alphacar
2063.576027
vioscreen_alphtoce
9.07646685
vioscreen_alphtoco
8.530439319
vioscreen_arginine
2.459972977
vioscreen_ash
14.12553377
vioscreen_aspartam
0.0
vioscreen_aspartic
4.28473887
vioscreen_avcarb
91.7952911
vioscreen_bcodeid
Not provided
vioscreen_betacar
13725.850680000001
vioscreen_betacryp
119.13232020000001
vioscreen_betaine
90.07472175
vioscreen_betatoco
0.17728766899999998
vioscreen_biochana
0.009178083
vioscreen_bmi
Not provided
vioscreen_caffeine
81.98876819
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.9556399999999999
vioscreen_calcium_servings
2.35307
vioscreen_calories
1461.313014
vioscreen_carbo
109.08132490000001
vioscreen_cholest
161.0948844
vioscreen_choline
292.7563784
vioscreen_clac9t11
0.033123288
vioscreen_clat10c12
0.004849315
vioscreen_copper
0.827506706
vioscreen_coumest
0.025945206000000002
vioscreen_cystine
0.505424604
vioscreen_d_cheese
0.17095890800000002
vioscreen_d_milk
0.743287638
vioscreen_d_tot_soym
0.9556438290000001
vioscreen_d_total
0.9556438290000001
vioscreen_d_yogurt
0.038328766
vioscreen_daidzein
0.926876873
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.934876742
vioscreen_discfat_oil
20.13893408
vioscreen_discfat_sol
13.48090486
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000328767
vioscreen_f_citmlb
0.069753417
vioscreen_f_nj_citmlb
0.060712323
vioscreen_f_nj_other
0.16969862600000002
vioscreen_f_nj_total
0.23041093399999998
vioscreen_f_other
0.16969862600000002
vioscreen_f_total
0.239424635
vioscreen_fat
41.25841182
vioscreen_fiber
17.26476616
vioscreen_fibh2o
3.7598365260000004
vioscreen_fibinso
13.54539945
vioscreen_finished
1/11/15
vioscreen_fish_servings
3.4178800000000003
vioscreen_fol_deqv
257.0065068
vioscreen_fol_nat
249.5620077
vioscreen_fol_syn
4.379041029
vioscreen_formontn
0.001260274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.5
vioscreen_fructose
6.122630833
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
0.64915065
vioscreen_g_total
1.442465921
vioscreen_g_whl
0.7933424859999999
vioscreen_galactos
0.16983562100000002
vioscreen_gammtoco
4.389643755
vioscreen_gender
false
vioscreen_genistn
0.9701918509999999
vioscreen_glac
31.21963827
vioscreen_gltc
36.63676691
vioscreen_glucose
6.805973753
vioscreen_glutamic
7.762601001
vioscreen_glycine
1.74016431
vioscreen_glycitn
0.462219196
vioscreen_grams
1874.4160960000002
vioscreen_hei2010_dairy
5.0
vioscreen_hei2010_empty_calories
4.9
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
1.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.0
vioscreen_hei2010_whole_grains
3.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.0
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
9.9
vioscreen_hei_milk
5.0
vioscreen_hei_non_juice_frt
2.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
55.6
vioscreen_hei_sodium
4.3
vioscreen_hei_sol_fat_alc_add_sug
0.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.8
vioscreen_height
Not provided
vioscreen_histidin
1.148383655
vioscreen_inositol
0.37717807700000006
vioscreen_iron
9.708876686
vioscreen_isoleuc
1.9851233080000001
vioscreen_isomalt
0.0
vioscreen_joules
6114.130822
vioscreen_juice_servings
0.01795
vioscreen_lactitol
0.0
vioscreen_lactose
10.08821971
vioscreen_legumes
0.20180822899999998
vioscreen_leucine
3.396027531
vioscreen_line_gi
204.83510269999996
vioscreen_low_fat_dairy_serving
0.38329
vioscreen_lutzeax
16807.32192
vioscreen_lycopene
4905.100342
vioscreen_lysine
3.1635073310000004
vioscreen_m_egg
0.509205481
vioscreen_m_fish_hi
1.40627408
vioscreen_m_fish_lo
0.541616445
vioscreen_m_frank
0.0
vioscreen_m_meat
0.10347945300000001
vioscreen_m_mpf
2.118219245
vioscreen_m_nutsd
0.165342462
vioscreen_m_organ
0.0
vioscreen_m_poult
0.066958906
vioscreen_m_soy
0.002657534
vioscreen_magnes
324.6819349
vioscreen_maltitol
0.0
vioscreen_maltose
1.214575363
vioscreen_mangan
3.1839997589999998
vioscreen_mannitol
0.20720549300000002
vioscreen_methhis3
6.36923293
vioscreen_methion
0.9987946809999999
vioscreen_mfa141
0.039534245
vioscreen_mfa161
0.6897259859999999
vioscreen_mfa181
17.36772662
vioscreen_mfa201
0.307205451
vioscreen_mfa221
0.25843834
vioscreen_mfatot
18.76874197
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.508466663
vioscreen_nccglbr
69.15797303
vioscreen_nccglgr
48.37961259
vioscreen_niacin
12.59860338
vioscreen_niacineq
21.16243846
vioscreen_nitrogen
7.14460282
vioscreen_non_fried_fish_servings
3.4178800000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6149589640000002
vioscreen_oxalic
439.82200339999997
vioscreen_oxalicm
427.0400257
vioscreen_pantothe
3.3306025260000003
vioscreen_pectins
3.368959025
vioscreen_pfa182
6.397343215
vioscreen_pfa183
0.941013786
vioscreen_pfa184
0.055369861
vioscreen_pfa204
0.078767134
vioscreen_pfa205
0.17586302
vioscreen_pfa225
0.066027393
vioscreen_pfa226
0.37690413
vioscreen_pfatot
8.157396458
vioscreen_phenylal
1.927698757
vioscreen_phosphor
909.5059932
vioscreen_phytic
382.81048799999996
vioscreen_pinitol
0.0066301369999999995
vioscreen_potass
2837.873973
vioscreen_procdate
10/28/15
vioscreen_proline
2.418356365
vioscreen_protanim
27.18241385
vioscreen_protein
44.5045778
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.32227633
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
629.0
vioscreen_retinol
210.78758560000003
vioscreen_rgrain
0.255945221
vioscreen_ribofla
1.2721368659999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.5844699999999999
vioscreen_satoco
0.048821917
vioscreen_selenium
59.84180758
vioscreen_serine
2.111095857
vioscreen_sfa100
0.20805478
vioscreen_sfa120
0.401287675
vioscreen_sfa140
0.9631780759999999
vioscreen_sfa160
6.507616519
vioscreen_sfa170
0.057150680999999995
vioscreen_sfa180
2.190383368
vioscreen_sfa200
0.106273996
vioscreen_sfa220
0.070328773
vioscreen_sfa40
0.232356158
vioscreen_sfa60
0.129178076
vioscreen_sfa80
0.115643833
vioscreen_sfatot
11.16208195
vioscreen_sodium
2219.7830480000002
vioscreen_sorbitol
0.181068483
vioscreen_srvid
16843.0
vioscreen_starch
28.89036012
vioscreen_started
1/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.021452055
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.28720569
vioscreen_sweet_servings
0.12415
vioscreen_tagatose
0.753698647
vioscreen_tfa161t
0.01890411
vioscreen_tfa181t
0.491671209
vioscreen_tfa182t
0.12331507400000001
vioscreen_tgrain
1.432383582
vioscreen_thiamin
0.590000059
vioscreen_threonin
1.7944657
vioscreen_time
87.0
vioscreen_totaltfa
0.652602773
vioscreen_totcla
0.038383562
vioscreen_totfolat
253.9410531
vioscreen_totsugar
37.49307042
vioscreen_tryptoph
0.514986305
vioscreen_tyrosine
1.579616432
vioscreen_user_id
16843.0
vioscreen_v_drkgr
1.082273969
vioscreen_v_orange
0.423260289
vioscreen_v_other
0.7972602740000001
vioscreen_v_potato
0.102958909
vioscreen_v_starcy
0.159917805
vioscreen_v_tomato
0.23454794699999998
vioscreen_v_total
2.8002735710000004
vioscreen_valine
2.29997291
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
25397.49315
vioscreen_vita_rae
1445.554623
vioscreen_vita_re
2680.321575
vioscreen_vitb12
3.384273999
vioscreen_vitb6
1.6185207419999998
vioscreen_vitc
105.46892120000001
vioscreen_vitd
9.263124064
vioscreen_vitd2
0.0007945210000000001
vioscreen_vitd3
9.26235686
vioscreen_vitd_iu
370.5249625
vioscreen_vite_iu
12.73383856
vioscreen_vitk
739.5697774
vioscreen_water
1596.47774
vioscreen_weight
Not provided
vioscreen_wgrain
1.176438423
vioscreen_whole_grain_servings
0.7933399999999999
vioscreen_xylitol
0.067041099
vioscreen_zinc
5.728575824
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)