American Gut Project; 10317.000022906
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633043
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022906
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
80.0
age_corrected
80.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22906
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1935.0
bmi
15.83
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-01-26
collection month
January
collection season
Winter
collection time
20:05
collection_timestamp
2015-01-26 20:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
183.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
e70c6db25075db6c202d167fb66cd4b37e8ddad73bcab8dbdfb3afc1a4f75203021aa67978b8ff16f40eea85f814d5c466bdbc26e5c9c8477b7d3cecdcaab033
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-83.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022906
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MI
subset_age
false
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
d38f115c8037966f
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.052383564
vioscreen_a_cal
6.373205399
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.418246669
vioscreen_addsugar
6.817589496
vioscreen_adsugtot
5.890109295
vioscreen_age
215.0
vioscreen_alanine
0.944876726
vioscreen_alcohol
0.79567127
vioscreen_alcohol_servings
0.052379999999999996
vioscreen_alphacar
1953.3222600000001
vioscreen_alphtoce
4.292356057
vioscreen_alphtoco
4.082958983999999
vioscreen_arginine
1.096109636
vioscreen_ash
6.982492107000001
vioscreen_aspartam
0.0
vioscreen_aspartic
1.7573697019999999
vioscreen_avcarb
61.9784086
vioscreen_bcodeid
Not provided
vioscreen_betacar
6328.410959000001
vioscreen_betacryp
17.88635488
vioscreen_betaine
117.3563784
vioscreen_betatoco
0.076027397
vioscreen_biochana
0.005643835
vioscreen_bmi
Not provided
vioscreen_caffeine
138.57665880000002
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.09956
vioscreen_calcium_servings
0.71723
vioscreen_calories
579.0441352999999
vioscreen_carbo
73.48044735
vioscreen_cholest
170.2280929
vioscreen_choline
187.0161815
vioscreen_clac9t11
0.004136986
vioscreen_clat10c12
0.000438356
vioscreen_copper
0.603013715
vioscreen_coumest
0.01520548
vioscreen_cystine
0.340958896
vioscreen_d_cheese
0.001890411
vioscreen_d_milk
0.026465752999999998
vioscreen_d_tot_soym
0.099561644
vioscreen_d_total
0.099561644
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.05813699
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.360712339
vioscreen_discfat_oil
12.48851937
vioscreen_discfat_sol
5.537890625
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.148301362
vioscreen_f_nj_citmlb
0.147424651
vioscreen_f_nj_other
0.44224657
vioscreen_f_nj_total
0.589671221
vioscreen_f_other
0.44224657
vioscreen_f_total
0.59052053
vioscreen_fat
22.96838613
vioscreen_fiber
11.50326011
vioscreen_fibh2o
2.366493204
vioscreen_fibinso
9.169398142999999
vioscreen_finished
1/26/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
183.0097389
vioscreen_fol_nat
165.8673908
vioscreen_fol_syn
10.08613683
vioscreen_formontn
0.000575342
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.2
vioscreen_fructose
7.237121415
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.65813699
vioscreen_g_total
2.590438383
vioscreen_g_whl
1.93230131
vioscreen_galactos
0.124602738
vioscreen_gammtoco
1.747452075
vioscreen_gender
false
vioscreen_genistn
0.048246577
vioscreen_glac
30.00665935
vioscreen_gltc
34.61270869
vioscreen_glucose
6.712629762000001
vioscreen_glutamic
3.410959239
vioscreen_glycine
0.730219175
vioscreen_glycitn
0.010246575
vioscreen_grams
2052.747774
vioscreen_hei2010_dairy
1.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.7
vioscreen_hei2010_sea_foods_plant_protiens
2.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.9
vioscreen_hei_milk
1.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
81.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
0.472520509
vioscreen_inositol
0.039835614
vioscreen_iron
4.245506475
vioscreen_isoleuc
0.8668494659999999
vioscreen_isomalt
0.0
vioscreen_joules
2422.720205
vioscreen_juice_servings
0.00173
vioscreen_lactitol
0.0
vioscreen_lactose
1.27032872
vioscreen_legumes
0.055424655999999996
vioscreen_leucine
1.41983559
vioscreen_line_gi
156.9499679
vioscreen_low_fat_dairy_serving
0.07121
vioscreen_lutzeax
3143.312671
vioscreen_lycopene
547.6721318
vioscreen_lysine
1.146821991
vioscreen_m_egg
0.854794521
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.018849315
vioscreen_m_mpf
0.358986298
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.34013699
vioscreen_m_soy
0.000438356
vioscreen_magnes
144.8562179
vioscreen_maltitol
0.0
vioscreen_maltose
1.631232944
vioscreen_mangan
3.4182466689999997
vioscreen_mannitol
0.173095912
vioscreen_methhis3
1.519890438
vioscreen_methion
0.425808256
vioscreen_mfa141
0.005150685
vioscreen_mfa161
0.39254794200000004
vioscreen_mfa181
12.76021913
vioscreen_mfa201
0.069123292
vioscreen_mfa221
0.00339726
vioscreen_mfatot
13.25696035
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
4.082958983999999
vioscreen_nccglbr
50.09807363
vioscreen_nccglgr
35.03599904
vioscreen_niacin
5.988795617999999
vioscreen_niacineq
9.66600091
vioscreen_nitrogen
3.5251779219999997
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.375041136
vioscreen_oxalic
161.2884097
vioscreen_oxalicm
147.2930437
vioscreen_pantothe
2.17076717
vioscreen_pectins
1.524849335
vioscreen_pfa182
2.9059168989999997
vioscreen_pfa183
0.349726032
vioscreen_pfa184
0.0
vioscreen_pfa204
0.07786301400000001
vioscreen_pfa205
0.002876712
vioscreen_pfa225
0.002520548
vioscreen_pfa226
0.020109588
vioscreen_pfatot
3.366410932
vioscreen_phenylal
0.880520504
vioscreen_phosphor
362.4173373
vioscreen_phytic
317.5738014
vioscreen_pinitol
0.000438356
vioscreen_potass
1185.889469
vioscreen_procdate
10/28/15
vioscreen_proline
1.0150960009999999
vioscreen_protanim
9.534054607
vioscreen_protein
21.51898545
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.98372485
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
590.0
vioscreen_retinol
76.43646725
vioscreen_rgrain
0.8701644270000001
vioscreen_ribofla
0.6715889709999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.4952299999999998
vioscreen_satoco
0.0
vioscreen_selenium
44.06410798
vioscreen_serine
0.992109492
vioscreen_sfa100
0.006739726
vioscreen_sfa120
0.011369863000000001
vioscreen_sfa140
0.051095895
vioscreen_sfa160
3.405533966
vioscreen_sfa170
0.013863014
vioscreen_sfa180
0.886657548
vioscreen_sfa200
0.061123290999999996
vioscreen_sfa220
0.026082192999999997
vioscreen_sfa40
0.007342465
vioscreen_sfa60
0.0035342459999999996
vioscreen_sfa80
0.008054795
vioscreen_sfatot
4.513233091
vioscreen_sodium
1185.7743150000001
vioscreen_sorbitol
0.156547933
vioscreen_srvid
16988.0
vioscreen_starch
31.91696008
vioscreen_started
1/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
5.868438303
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.5066301320000001
vioscreen_tfa161t
0.003917808
vioscreen_tfa181t
0.459397282
vioscreen_tfa182t
0.05852055
vioscreen_tgrain
2.483863141
vioscreen_thiamin
0.458794497
vioscreen_threonin
0.802712302
vioscreen_time
18.0
vioscreen_totaltfa
0.624958948
vioscreen_totcla
0.0046575340000000005
vioscreen_totfolat
175.953521
vioscreen_totsugar
23.08128746
vioscreen_tryptoph
0.22106847899999998
vioscreen_tyrosine
0.642931544
vioscreen_user_id
16988.0
vioscreen_v_drkgr
0.30767124100000004
vioscreen_v_orange
0.40646567100000003
vioscreen_v_other
0.379808233
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.046000003
vioscreen_v_tomato
0.067178083
vioscreen_v_total
1.207095964
vioscreen_valine
1.007123304
vioscreen_veg5_day
2.5
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
2.4
vioscreen_visit
1.0
vioscreen_vita_iu
12444.66986
vioscreen_vita_rae
685.9383562
vioscreen_vita_re
1295.439298
vioscreen_vitb12
0.632383582
vioscreen_vitb6
0.624958948
vioscreen_vitc
30.12054795
vioscreen_vitd
1.017041099
vioscreen_vitd2
0.0
vioscreen_vitd3
1.017041099
vioscreen_vitd_iu
40.68164397
vioscreen_vite_iu
6.089645093
vioscreen_vitk
131.5165454
vioscreen_water
1930.659418
vioscreen_weight
Not provided
vioscreen_wgrain
1.61369863
vioscreen_whole_grain_servings
1.9323
vioscreen_xylitol
0.017972603
vioscreen_zinc
3.03964409
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
54.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)