10317.000022022; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632976
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022022
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22022
antibiotic_history
Month
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
23.99
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-17
collection month
May
collection season
Spring
collection time
20:30
collection_timestamp
2015-05-17 20:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
27.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
178.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
211ae37f8229371841f7cfc3d5dd657ba6b92eeb84f5d46083bcc793a5f80141fe6c1c7cb45ac76bdf5ce666afca603a637a954af97281c606da8dd32d2b0598
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-32.1
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
115.9
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022022
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5ce5c4a54e3cd8a6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.545369856
vioscreen_a_cal
209.05286819999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.483780702
vioscreen_addsugar
21.94917728
vioscreen_adsugtot
17.58972603
vioscreen_age
215.0
vioscreen_alanine
3.199534795
vioscreen_alcohol
22.44035477
vioscreen_alcohol_servings
1.5453700000000001
vioscreen_alphacar
2861.404966
vioscreen_alphtoce
12.24739673
vioscreen_alphtoco
11.29147983
vioscreen_arginine
3.776493271
vioscreen_ash
19.42589228
vioscreen_aspartam
0.0
vioscreen_aspartic
6.518711874
vioscreen_avcarb
152.4188463
vioscreen_bcodeid
Not provided
vioscreen_betacar
12717.75068
vioscreen_betacryp
481.15916100000004
vioscreen_betaine
91.34605094
vioscreen_betatoco
0.287780824
vioscreen_biochana
0.013917809
vioscreen_bmi
Not provided
vioscreen_caffeine
247.084375
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.33729000000000003
vioscreen_calcium_servings
1.8278400000000001
vioscreen_calories
1583.050342
vioscreen_carbo
183.32778249999998
vioscreen_cholest
204.3675728
vioscreen_choline
363.3694349
vioscreen_clac9t11
0.037726029
vioscreen_clat10c12
0.010767121999999999
vioscreen_copper
1.4872876309999998
vioscreen_coumest
0.21473973899999999
vioscreen_cystine
0.865506859
vioscreen_d_cheese
0.152575349
vioscreen_d_milk
0.184602753
vioscreen_d_tot_soym
0.33728767299999995
vioscreen_d_total
0.33728767299999995
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.043671156
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.347808336
vioscreen_discfat_oil
23.86734
vioscreen_discfat_sol
15.18873876
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001890411
vioscreen_f_citmlb
0.950219225
vioscreen_f_nj_citmlb
0.940904173
vioscreen_f_nj_other
0.9463287770000001
vioscreen_f_nj_total
1.88723295
vioscreen_f_other
0.9463287770000001
vioscreen_f_total
1.8965753419999998
vioscreen_fat
57.19273866
vioscreen_fiber
30.517974100000004
vioscreen_fibh2o
10.11271137
vioscreen_fibinso
20.54142498
vioscreen_finished
5/17/15
vioscreen_fish_servings
2.32442
vioscreen_fol_deqv
440.3282962
vioscreen_fol_nat
388.17594180000003
vioscreen_fol_syn
30.65254709
vioscreen_formontn
0.004630137
vioscreen_fried_fish_servings
0.39712
vioscreen_fried_food_servings
0.14795
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.8
vioscreen_fructose
22.57821864
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.6161096019999999
vioscreen_g_total
2.066739853
vioscreen_g_whl
0.450602701
vioscreen_galactos
0.185479444
vioscreen_gammtoco
7.3214516000000005
vioscreen_gender
false
vioscreen_genistn
1.5660274980000002
vioscreen_glac
82.44584225
vioscreen_gltc
90.77748288
vioscreen_glucose
22.34646698
vioscreen_glutamic
11.18057644
vioscreen_glycine
2.845397113
vioscreen_glycitn
0.23854794399999998
vioscreen_grams
4524.643493
vioscreen_hei2010_dairy
1.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.8
vioscreen_hei_score
76.0
vioscreen_hei_sodium
5.2
vioscreen_hei_sol_fat_alc_add_sug
16.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.9
vioscreen_height
Not provided
vioscreen_histidin
1.6608495419999998
vioscreen_inositol
0.10293150599999999
vioscreen_iron
11.58158845
vioscreen_isoleuc
2.670027056
vioscreen_isomalt
0.0
vioscreen_joules
6623.483561999999
vioscreen_juice_servings
0.018680000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
0.8292054059999999
vioscreen_legumes
0.016684932
vioscreen_leucine
4.47202717
vioscreen_line_gi
404.3519692
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
4467.05
vioscreen_lycopene
7783.671918000001
vioscreen_lysine
4.178985847
vioscreen_m_egg
0.617424659
vioscreen_m_fish_hi
0.523232907
vioscreen_m_fish_lo
0.801369863
vioscreen_m_frank
0.061095888
vioscreen_m_meat
1.2939725690000001
vioscreen_m_mpf
3.659917795
vioscreen_m_nutsd
0.965589048
vioscreen_m_organ
0.0
vioscreen_m_poult
0.980383468
vioscreen_m_soy
0.061342464000000006
vioscreen_magnes
339.8036387
vioscreen_maltitol
0.0
vioscreen_maltose
2.17687704
vioscreen_mangan
3.8432329569999997
vioscreen_mannitol
0.38202740399999996
vioscreen_methhis3
12.66350466
vioscreen_methion
1.3406301
vioscreen_mfa141
0.043999999000000005
vioscreen_mfa161
1.068246335
vioscreen_mfa181
26.42007973
vioscreen_mfa201
0.258328791
vioscreen_mfa221
0.072301368
vioscreen_mfatot
27.96476884
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
11.210383
vioscreen_nccglbr
119.8712436
vioscreen_nccglgr
83.84906892
vioscreen_niacin
21.28329142
vioscreen_niacineq
32.69602419
vioscreen_nitrogen
10.39682149
vioscreen_non_fried_fish_servings
1.9273099999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.216657665
vioscreen_oxalic
247.37791099999998
vioscreen_oxalicm
248.3812286
vioscreen_pantothe
6.4980823260000005
vioscreen_pectins
6.0251504979999995
vioscreen_pfa182
9.94054741
vioscreen_pfa183
0.933917905
vioscreen_pfa184
0.017616438
vioscreen_pfa204
0.11879453300000001
vioscreen_pfa205
0.06745206200000001
vioscreen_pfa225
0.030465756
vioscreen_pfa226
0.167972596
vioscreen_pfatot
11.33545189
vioscreen_phenylal
2.655013411
vioscreen_phosphor
970.6585616
vioscreen_phytic
719.7721747
vioscreen_pinitol
0.001753425
vioscreen_potass
3578.7321920000004
vioscreen_procdate
10/28/15
vioscreen_proline
3.0828218639999996
vioscreen_protanim
34.96528521
vioscreen_protein
63.73495826
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.77057203
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
443.0
vioscreen_retinol
130.3881956
vioscreen_rgrain
1.999479445
vioscreen_ribofla
1.6792873430000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.03463
vioscreen_satoco
0.177863009
vioscreen_selenium
85.86403575
vioscreen_serine
2.7678903239999997
vioscreen_sfa100
0.080876714
vioscreen_sfa120
0.111150684
vioscreen_sfa140
0.55115068
vioscreen_sfa160
8.57652103
vioscreen_sfa170
0.039068496
vioscreen_sfa180
2.823013431
vioscreen_sfa200
0.159698612
vioscreen_sfa220
0.19378081
vioscreen_sfa40
0.101863015
vioscreen_sfa60
0.045506856
vioscreen_sfa80
0.031890412
vioscreen_sfatot
12.90219258
vioscreen_sodium
2246.25137
vioscreen_sorbitol
0.130575352
vioscreen_srvid
18716.0
vioscreen_starch
59.17276862
vioscreen_started
5/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.50169494
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
0.131506849
vioscreen_tfa161t
0.020164383
vioscreen_tfa181t
0.8993424090000001
vioscreen_tfa182t
0.128821909
vioscreen_tgrain
2.8450961180000003
vioscreen_thiamin
1.257397377
vioscreen_threonin
2.462411039
vioscreen_time
34.0
vioscreen_totaltfa
1.0627945570000001
vioscreen_totcla
0.048794524000000006
vioscreen_totfolat
418.8268408
vioscreen_totsugar
63.91892658
vioscreen_tryptoph
0.685013737
vioscreen_tyrosine
1.9803563780000002
vioscreen_user_id
18716.0
vioscreen_v_drkgr
0.880219175
vioscreen_v_orange
0.640493147
vioscreen_v_other
2.183726021
vioscreen_v_potato
0.572136991
vioscreen_v_starcy
0.18000001300000001
vioscreen_v_tomato
0.674958906
vioscreen_v_total
5.131534273
vioscreen_valine
3.0166028999999996
vioscreen_veg5_day
11.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
10.3
vioscreen_visit
1.0
vioscreen_vita_iu
24415.621919999998
vioscreen_vita_rae
1329.474829
vioscreen_vita_re
2528.5628420000003
vioscreen_vitb12
2.758219345
vioscreen_vitb6
2.620028059
vioscreen_vitc
317.0976241
vioscreen_vitd
3.796520829
vioscreen_vitd2
0.002356164
vioscreen_vitd3
3.794164705
vioscreen_vitd_iu
151.8608332
vioscreen_vite_iu
16.87600064
vioscreen_vitk
240.2308005
vioscreen_water
4194.900342
vioscreen_weight
Not provided
vioscreen_wgrain
0.845643762
vioscreen_whole_grain_servings
0.4506
vioscreen_xylitol
0.033643837
vioscreen_zinc
8.449205372
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
76.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)