American Gut Project; 10317.000031566
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634331
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031566
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031566
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
18.56
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
08:25
collection_timestamp
2015-09-09 08:25
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
39.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
96d140517d1a98aa1fcdfd06fa6cc2337ade8cc2a4f756fcdcb971a164fd602801c7bd06a86af058a8028359f95b0138834675991362871f21b2c3280ee9da13
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
37.4
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031566
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
247c02612dcfebc8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.18125936
vioscreen_addsugar
68.03137307
vioscreen_adsugtot
56.26325985
vioscreen_age
215.0
vioscreen_alanine
3.6962736780000003
vioscreen_alcohol
0.055643839
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
3430.7109590000005
vioscreen_alphtoce
11.78531143
vioscreen_alphtoco
10.40591757
vioscreen_arginine
5.059834519
vioscreen_ash
27.74426905
vioscreen_aspartam
0.0
vioscreen_aspartic
8.897917113
vioscreen_avcarb
368.8923801
vioscreen_bcodeid
Not provided
vioscreen_betacar
16629.12877
vioscreen_betacryp
271.6787885
vioscreen_betaine
140.3257705
vioscreen_betatoco
0.386547935
vioscreen_biochana
0.050794518
vioscreen_bmi
Not provided
vioscreen_caffeine
1.693726088
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.2103
vioscreen_calcium_servings
3.93647
vioscreen_calories
2435.833048
vioscreen_carbo
439.54922949999997
vioscreen_cholest
49.0367348
vioscreen_choline
423.6084331999999
vioscreen_clac9t11
0.012273971000000002
vioscreen_clat10c12
0.00290411
vioscreen_copper
3.151150805
vioscreen_coumest
0.286602741
vioscreen_cystine
1.161452118
vioscreen_d_cheese
0.13243835699999998
vioscreen_d_milk
0.077863019
vioscreen_d_tot_soym
2.121205453
vioscreen_d_total
0.210301376
vioscreen_d_yogurt
0.0
vioscreen_daidzein
17.20909407
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.92739726
vioscreen_discfat_oil
11.63060253
vioscreen_discfat_sol
16.3151501
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0016712329999999998
vioscreen_f_citmlb
1.105013662
vioscreen_f_nj_citmlb
1.038520541
vioscreen_f_nj_other
2.052876679
vioscreen_f_nj_total
3.09139722
vioscreen_f_other
2.1188219040000003
vioscreen_f_total
3.2238354830000002
vioscreen_fat
48.68249679
vioscreen_fiber
70.64694991
vioscreen_fibh2o
17.02331576
vioscreen_fibinso
53.61695741
vioscreen_finished
9/9/15
vioscreen_fish_servings
0.6625
vioscreen_fol_deqv
840.3396403999999
vioscreen_fol_nat
612.9221318
vioscreen_fol_syn
133.7399722
vioscreen_formontn
0.006356164
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
4.2
vioscreen_frtsumm
6.4
vioscreen_fructose
34.93950396
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
1.762630097
vioscreen_g_total
10.24052066
vioscreen_g_whl
8.477889555
vioscreen_galactos
0.448410954
vioscreen_gammtoco
11.95315176
vioscreen_gender
false
vioscreen_genistn
20.34906491
vioscreen_glac
189.2490368
vioscreen_gltc
222.1775043
vioscreen_glucose
32.36079837
vioscreen_glutamic
15.66956068
vioscreen_glycine
3.415918303
vioscreen_glycitn
3.11167126
vioscreen_grams
3552.595548
vioscreen_hei2010_dairy
6.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.5
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.980438149
vioscreen_inositol
0.293917826
vioscreen_iron
27.84720409
vioscreen_isoleuc
3.26093148
vioscreen_isomalt
0.0
vioscreen_joules
10191.51712
vioscreen_juice_servings
0.26493
vioscreen_lactitol
0.0
vioscreen_lactose
1.225917868
vioscreen_legumes
1.2914794920000001
vioscreen_leucine
5.876384578
vioscreen_line_gi
1035.3722599999999
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6962.454795000001
vioscreen_lycopene
9761.241096
vioscreen_lysine
4.319863014
vioscreen_m_egg
0.082931508
vioscreen_m_fish_hi
0.17484931399999998
vioscreen_m_fish_lo
0.202739726
vioscreen_m_frank
0.0
vioscreen_m_meat
0.144301375
vioscreen_m_mpf
0.521890426
vioscreen_m_nutsd
1.12786305
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
1.9110960240000001
vioscreen_magnes
722.5955478999999
vioscreen_maltitol
0.0
vioscreen_maltose
9.841643702
vioscreen_mangan
11.32241144
vioscreen_mannitol
0.905452112
vioscreen_methhis3
2.33876719
vioscreen_methion
1.239726362
vioscreen_mfa141
0.015342467
vioscreen_mfa161
0.309150633
vioscreen_mfa181
15.26355817
vioscreen_mfa201
0.201205507
vioscreen_mfa221
0.029342466
vioscreen_mfatot
16.06200102
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.40591757
vioscreen_nccglbr
292.9768836
vioscreen_nccglgr
204.92048369999998
vioscreen_niacin
25.84779003
vioscreen_niacineq
42.03468804
vioscreen_nitrogen
14.08717626
vioscreen_non_fried_fish_servings
0.47923000000000004
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.485315109
vioscreen_oxalic
422.87782530000004
vioscreen_oxalicm
351.1946276
vioscreen_pantothe
6.855451359
vioscreen_pectins
9.577834037999999
vioscreen_pfa182
12.66662832
vioscreen_pfa183
1.386356385
vioscreen_pfa184
0.007342465
vioscreen_pfa204
0.020301369
vioscreen_pfa205
0.028986299
vioscreen_pfa225
0.009780821
vioscreen_pfa226
0.052904108
vioscreen_pfatot
14.66843563
vioscreen_phenylal
3.8155336980000003
vioscreen_phosphor
1930.935103
vioscreen_phytic
2430.853596
vioscreen_pinitol
0.09747945699999999
vioscreen_potass
5121.200685
vioscreen_procdate
10/28/15
vioscreen_proline
4.014519678
vioscreen_protanim
7.88986181
vioscreen_protein
85.55188356
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
77.66271404
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
98.0
vioscreen_retinol
410.6881421
vioscreen_rgrain
1.7363836419999998
vioscreen_ribofla
2.0719178080000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.3912
vioscreen_satoco
0.0
vioscreen_selenium
119.10848670000001
vioscreen_serine
4.063232756000001
vioscreen_sfa100
0.146438369
vioscreen_sfa120
0.6718904259999999
vioscreen_sfa140
0.695945217
vioscreen_sfa160
7.207725546
vioscreen_sfa170
0.022219177000000003
vioscreen_sfa180
3.109972308
vioscreen_sfa200
0.109534245
vioscreen_sfa220
0.179534222
vioscreen_sfa40
0.090794519
vioscreen_sfa60
0.045890420999999994
vioscreen_sfa80
0.10076712
vioscreen_sfatot
12.6376699
vioscreen_sodium
5340.016096
vioscreen_sorbitol
1.6466303580000001
vioscreen_srvid
20678.0
vioscreen_starch
199.4300514
vioscreen_started
9/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
58.02298266
vioscreen_sweet_servings
0.98618
vioscreen_tagatose
0.813616442
vioscreen_tfa161t
0.017780821000000002
vioscreen_tfa181t
1.052027287
vioscreen_tfa182t
0.187753421
vioscreen_tgrain
10.35257518
vioscreen_thiamin
2.237068072
vioscreen_threonin
2.8756712189999996
vioscreen_time
26.0
vioscreen_totaltfa
1.309232613
vioscreen_totcla
0.015753426
vioscreen_totfolat
746.6619007
vioscreen_totsugar
138.73247
vioscreen_tryptoph
0.970273956
vioscreen_tyrosine
2.397287698
vioscreen_user_id
20678.0
vioscreen_v_drkgr
1.151753381
vioscreen_v_orange
0.8524108890000001
vioscreen_v_other
1.904547872
vioscreen_v_potato
0.331479446
vioscreen_v_starcy
0.8162739790000001
vioscreen_v_tomato
1.0248219109999999
vioscreen_v_total
6.081232609
vioscreen_valine
3.995944925
vioscreen_veg5_day
10.3
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
11.9
vioscreen_visit
1.0
vioscreen_vita_iu
32166.87945
vioscreen_vita_rae
1950.715925
vioscreen_vita_re
3490.7424659999997
vioscreen_vitb12
3.571233546
vioscreen_vitb6
3.098220115
vioscreen_vitc
220.44011129999998
vioscreen_vitd
6.961452536
vioscreen_vitd2
4.9264384230000005
vioscreen_vitd3
2.0350137790000002
vioscreen_vitd_iu
278.4581015
vioscreen_vite_iu
15.50405073
vioscreen_vitk
300.68996150000004
vioscreen_water
2969.809589
vioscreen_weight
Not provided
vioscreen_wgrain
8.616218964
vioscreen_whole_grain_servings
8.477889999999999
vioscreen_xylitol
0.073452059
vioscreen_zinc
19.82869087
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily