American Gut Project; 10317.000035359
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634400
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:36Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000035359
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000035359
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1963.0
bmi
19.13
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-13
collection month
September
collection season
Fall
collection time
10:35
collection_timestamp
2015-09-13 10:35
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
New England
elevation
99.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fed532c2aad7358a9c4d328d2adda6c5c79f3f386d544b2efc1f4a9f44db7c4b55b95eda553a1f1785d585d07d85ac956984b573c545f05d5fc2d140af9d0cfe
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
43.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000035359
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NH
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
c8ed8bbbd5d8b3a7
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.7072602570000001
vioscreen_a_cal
69.44920805
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.026438423
vioscreen_addsugar
16.22986408
vioscreen_adsugtot
14.08838426
vioscreen_age
215.0
vioscreen_alanine
2.8873976619999997
vioscreen_alcohol
9.922355924
vioscreen_alcohol_servings
0.70726
vioscreen_alphacar
3919.97911
vioscreen_alphtoce
20.21893327
vioscreen_alphtoco
19.40391695
vioscreen_arginine
3.460383
vioscreen_ash
19.00454971
vioscreen_aspartam
0.0
vioscreen_aspartic
5.659671982000001
vioscreen_avcarb
104.374893
vioscreen_bcodeid
Not provided
vioscreen_betacar
32793.909589999996
vioscreen_betacryp
240.26840750000002
vioscreen_betaine
158.4223352
vioscreen_betatoco
0.297698598
vioscreen_biochana
0.004136986
vioscreen_bmi
Not provided
vioscreen_caffeine
73.18364191
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.07427
vioscreen_calcium_servings
2.28337
vioscreen_calories
1438.6606160000001
vioscreen_carbo
135.4698202
vioscreen_cholest
142.4503532
vioscreen_choline
279.3334118
vioscreen_clac9t11
0.09460273599999999
vioscreen_clat10c12
0.02060274
vioscreen_copper
1.412739793
vioscreen_coumest
0.000027399999999999995
vioscreen_cystine
0.640027566
vioscreen_d_cheese
0.0030410959999999996
vioscreen_d_milk
0.071232877
vioscreen_d_tot_soym
0.074273974
vioscreen_d_total
0.074273974
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.0038082190000000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.045945259
vioscreen_discfat_oil
42.17178136
vioscreen_discfat_sol
18.19674122
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0010136989999999999
vioscreen_f_citmlb
0.09854794900000001
vioscreen_f_nj_citmlb
0.090273975
vioscreen_f_nj_other
0.8321370159999999
vioscreen_f_nj_total
0.922410939
vioscreen_f_other
0.8321370159999999
vioscreen_f_total
0.930712305
vioscreen_fat
75.98693814
vioscreen_fiber
31.09490315
vioscreen_fibh2o
6.096822158999999
vioscreen_fibinso
25.15016053
vioscreen_finished
9/13/15
vioscreen_fish_servings
2.41308
vioscreen_fol_deqv
629.7362586
vioscreen_fol_nat
589.7402397000001
vioscreen_fol_syn
23.54704088
vioscreen_formontn
0.000821918
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.05114
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.9
vioscreen_fructose
15.51503773
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.891315115
vioscreen_g_total
1.03383555
vioscreen_g_whl
0.142520549
vioscreen_galactos
0.154109589
vioscreen_gammtoco
6.857178403
vioscreen_gender
false
vioscreen_genistn
0.007068493
vioscreen_glac
42.73306935
vioscreen_gltc
47.59422624
vioscreen_glucose
16.10553296
vioscreen_glutamic
8.559286708
vioscreen_glycine
2.520136919
vioscreen_glycitn
0.000027399999999999995
vioscreen_grams
2809.690925
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
4.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.0
vioscreen_hei_grains
1.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.4
vioscreen_hei_score
64.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
1.364712399
vioscreen_inositol
0.036328765
vioscreen_iron
13.23813811
vioscreen_isoleuc
2.2585475969999997
vioscreen_isomalt
0.0
vioscreen_joules
6019.35411
vioscreen_juice_servings
0.01655
vioscreen_lactitol
0.0
vioscreen_lactose
1.142438329
vioscreen_legumes
0.0
vioscreen_leucine
3.683150618
vioscreen_line_gi
247.12797519999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
42317.21918
vioscreen_lycopene
3001.2743149999997
vioscreen_lysine
3.737259538
vioscreen_m_egg
0.077808218
vioscreen_m_fish_hi
1.244657584
vioscreen_m_fish_lo
0.130493143
vioscreen_m_frank
0.0
vioscreen_m_meat
1.061588988
vioscreen_m_mpf
3.471698416
vioscreen_m_nutsd
0.155835609
vioscreen_m_organ
0.0
vioscreen_m_poult
1.034958931
vioscreen_m_soy
0.0
vioscreen_magnes
416.4744007
vioscreen_maltitol
0.0
vioscreen_maltose
0.795369856
vioscreen_mangan
4.522849556000001
vioscreen_mannitol
0.298931488
vioscreen_methhis3
13.53030153
vioscreen_methion
1.105890311
vioscreen_mfa141
0.030767125
vioscreen_mfa161
1.031315048
vioscreen_mfa181
28.83607395
vioscreen_mfa201
0.44186305200000003
vioscreen_mfa221
0.260602768
vioscreen_mfatot
30.75913153
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
19.40391695
vioscreen_nccglbr
88.28301049
vioscreen_nccglgr
61.74907427
vioscreen_niacin
15.73975813
vioscreen_niacineq
26.22173052
vioscreen_nitrogen
8.596192075
vioscreen_non_fried_fish_servings
2.41308
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.082521538
vioscreen_oxalic
1559.7633560000002
vioscreen_oxalicm
1579.9066779999998
vioscreen_pantothe
4.073862238
vioscreen_pectins
7.324027451
vioscreen_pfa182
15.56087596
vioscreen_pfa183
2.447014294
vioscreen_pfa184
0.053534249000000006
vioscreen_pfa204
0.089232886
vioscreen_pfa205
0.169095894
vioscreen_pfa225
0.070657532
vioscreen_pfa226
0.342958905
vioscreen_pfatot
18.80832754
vioscreen_phenylal
2.230958871
vioscreen_phosphor
794.0012842
vioscreen_phytic
352.23591610000005
vioscreen_pinitol
0.00509589
vioscreen_potass
4152.306164
vioscreen_procdate
10/28/15
vioscreen_proline
2.2692876109999998
vioscreen_protanim
28.57336794
vioscreen_protein
53.5770869
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.00578179
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
88.0
vioscreen_retinol
171.51938140000001
vioscreen_rgrain
0.352438354
vioscreen_ribofla
1.362958851
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
7.534110000000001
vioscreen_satoco
0.0
vioscreen_selenium
53.874213399999995
vioscreen_serine
2.1898904040000002
vioscreen_sfa100
0.457452058
vioscreen_sfa120
0.485424554
vioscreen_sfa140
1.6593699830000002
vioscreen_sfa160
11.62679393
vioscreen_sfa170
0.146602735
vioscreen_sfa180
4.724575931
vioscreen_sfa200
0.19545202399999997
vioscreen_sfa220
0.096739719
vioscreen_sfa40
0.582082168
vioscreen_sfa60
0.348027394
vioscreen_sfa80
0.213068505
vioscreen_sfatot
20.6090419
vioscreen_sodium
2960.3753420000003
vioscreen_sorbitol
0.022000002
vioscreen_srvid
20711.0
vioscreen_starch
38.90159193
vioscreen_started
9/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
18.30687607
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.475369723
vioscreen_tfa161t
0.019095891
vioscreen_tfa181t
0.9088219209999999
vioscreen_tfa182t
0.333643832
vioscreen_tgrain
1.054438343
vioscreen_thiamin
0.980356295
vioscreen_threonin
2.256575409
vioscreen_time
21.0
vioscreen_totaltfa
1.26227417
vioscreen_totcla
0.115753435
vioscreen_totfolat
613.2872432
vioscreen_totsugar
51.68076841
vioscreen_tryptoph
0.629479479
vioscreen_tyrosine
1.7475886930000002
vioscreen_user_id
20711.0
vioscreen_v_drkgr
3.532301477
vioscreen_v_orange
0.767780795
vioscreen_v_other
2.9939453119999997
vioscreen_v_potato
0.534191811
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.41038354299999996
vioscreen_v_total
8.23865716
vioscreen_valine
2.551616177
vioscreen_veg5_day
16.4
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
16.5
vioscreen_visit
1.0
vioscreen_vita_iu
58693.49589
vioscreen_vita_rae
3077.689726
vioscreen_vita_re
5983.861644
vioscreen_vitb12
2.734712115
vioscreen_vitb6
2.435452229
vioscreen_vitc
277.11312069999997
vioscreen_vitd
5.866110606
vioscreen_vitd2
0.000273973
vioscreen_vitd3
5.865836366
vioscreen_vitd_iu
234.6444242
vioscreen_vite_iu
28.95024882
vioscreen_vitk
1708.779452
vioscreen_water
2521.073288
vioscreen_weight
Not provided
vioscreen_wgrain
0.7019999459999999
vioscreen_whole_grain_servings
0.14252
vioscreen_xylitol
0.050356173
vioscreen_zinc
7.16646578
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
48.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)