American Gut Project; 10317.000026613
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633169
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026613
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
25.0
age_corrected
25.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26613
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1990.0
bmi
22.15
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-27
collection month
April
collection season
Spring
collection time
08:00
collection_timestamp
2015-04-27 08:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1600.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
5e74b78a3e50052193adfb841744af024f5c76b4325869769fe57d477531754f55627783f10e77e31bd03ef877f907f67a18a7d87e735da8ace6f647e7680b40
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
45.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-110.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026613
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MT
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
c2c16cd5f0abfbd7
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.129835657
vioscreen_a_cal
154.2106378
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.763918691
vioscreen_addsugar
51.94722817
vioscreen_adsugtot
43.00649615
vioscreen_age
215.0
vioscreen_alanine
3.5731224580000003
vioscreen_alcohol
15.89534193
vioscreen_alcohol_servings
1.12984
vioscreen_alphacar
1005.986473
vioscreen_alphtoce
15.11383642
vioscreen_alphtoco
13.26468456
vioscreen_arginine
4.610137187
vioscreen_ash
26.29112532
vioscreen_aspartam
0.0
vioscreen_aspartic
7.022191379
vioscreen_avcarb
309.37296660000004
vioscreen_bcodeid
Not provided
vioscreen_betacar
5424.989041
vioscreen_betacryp
188.67615580000003
vioscreen_betaine
309.3147688
vioscreen_betatoco
0.629972651
vioscreen_biochana
0.0070136980000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
54.93561644
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.98597
vioscreen_calcium_servings
4.38071
vioscreen_calories
2816.06524
vioscreen_carbo
339.2431079
vioscreen_cholest
216.86866439999997
vioscreen_choline
296.5063784
vioscreen_clac9t11
0.179479458
vioscreen_clat10c12
0.034986302999999996
vioscreen_copper
1.827013658
vioscreen_coumest
0.057863015999999996
vioscreen_cystine
1.251808229
vioscreen_d_cheese
1.186712396
vioscreen_d_milk
0.6559725829999999
vioscreen_d_tot_soym
1.9859724490000001
vioscreen_d_total
1.9859724490000001
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.911452035
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.7400547810000004
vioscreen_discfat_oil
33.30581389
vioscreen_discfat_sol
65.86596747
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.018356163999999998
vioscreen_f_nj_citmlb
0.014986301
vioscreen_f_nj_other
0.935150732
vioscreen_f_nj_total
0.950164377
vioscreen_f_other
0.935150732
vioscreen_f_total
0.95356161
vioscreen_fat
115.93523119999999
vioscreen_fiber
29.47405287
vioscreen_fibh2o
9.02117736
vioscreen_fibinso
20.39276541
vioscreen_finished
4/13/15
vioscreen_fish_servings
0.28865
vioscreen_fol_deqv
813.7464897000001
vioscreen_fol_nat
297.9462115
vioscreen_fol_syn
303.1982235
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.05114
vioscreen_frt5_day
2.0
vioscreen_frtsumm
1.9
vioscreen_fructose
21.00840914
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
10.76739753
vioscreen_g_total
13.40536976
vioscreen_g_whl
2.638027411
vioscreen_galactos
0.425945209
vioscreen_gammtoco
14.74959198
vioscreen_gender
false
vioscreen_genistn
1.599506869
vioscreen_glac
156.39760269999996
vioscreen_gltc
168.1918664
vioscreen_glucose
19.18701573
vioscreen_glutamic
21.26723432
vioscreen_glycine
3.455999839
vioscreen_glycitn
0.239150687
vioscreen_grams
3220.808904
vioscreen_hei2010_dairy
5.4
vioscreen_hei2010_empty_calories
14.9
vioscreen_hei2010_fatty_acids
2.8
vioscreen_hei2010_fruit
2.1
vioscreen_hei2010_greens_beans
2.9
vioscreen_hei2010_protien_foods
3.5
vioscreen_hei2010_refined_grains
1.9
vioscreen_hei2010_score
52.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
3.7
vioscreen_hei2010_whole_fruit
4.2
vioscreen_hei2010_whole_grains
6.2
vioscreen_hei_drk_g_org_veg_leg
2.2
vioscreen_hei_fruit
2.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.0
vioscreen_hei_milk
5.4
vioscreen_hei_non_juice_frt
4.2
vioscreen_hei_oils
9.9
vioscreen_hei_sat_fat
2.6
vioscreen_hei_score
57.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.8
vioscreen_hei_veg
3.7
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
2.252274019
vioscreen_inositol
0.026410962000000003
vioscreen_iron
21.05517712
vioscreen_isoleuc
3.6998903039999997
vioscreen_isomalt
0.0
vioscreen_joules
11782.41096
vioscreen_juice_servings
0.00674
vioscreen_lactitol
0.0
vioscreen_lactose
10.16484843
vioscreen_legumes
0.142657533
vioscreen_leucine
6.647725812999999
vioscreen_line_gi
564.9448629999999
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
4969.121575
vioscreen_lycopene
7987.497259999999
vioscreen_lysine
4.5103003930000005
vioscreen_m_egg
0.194328768
vioscreen_m_fish_hi
0.164493153
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.642000005
vioscreen_m_meat
0.784054858
vioscreen_m_mpf
1.776082245
vioscreen_m_nutsd
2.294054841
vioscreen_m_organ
0.0
vioscreen_m_poult
0.185561632
vioscreen_m_soy
0.060739725999999994
vioscreen_magnes
425.227911
vioscreen_maltitol
0.0
vioscreen_maltose
8.75350693
vioscreen_mangan
6.300273571
vioscreen_mannitol
0.611451993
vioscreen_methhis3
6.418712543
vioscreen_methion
1.704822279
vioscreen_mfa141
0.12846576199999998
vioscreen_mfa161
1.35964414
vioscreen_mfa181
40.63364459
vioscreen_mfa201
0.470821893
vioscreen_mfa221
0.035123287
vioscreen_mfatot
43.09578339
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.1835884
vioscreen_nccglbr
227.93482450000002
vioscreen_nccglgr
159.43811000000002
vioscreen_niacin
27.08678831
vioscreen_niacineq
44.22117937
vioscreen_nitrogen
15.07054393
vioscreen_non_fried_fish_servings
0.28865
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.991643869
vioscreen_oxalic
349.95113439999994
vioscreen_oxalicm
376.3568921
vioscreen_pantothe
5.175313704
vioscreen_pectins
3.176932055
vioscreen_pfa182
20.13698496
vioscreen_pfa183
1.884410451
vioscreen_pfa184
0.009013699
vioscreen_pfa204
0.063095892
vioscreen_pfa205
0.02739726
vioscreen_pfa225
0.017589041
vioscreen_pfa226
0.05345205
vioscreen_pfatot
22.32536922
vioscreen_phenylal
4.1750963180000005
vioscreen_phosphor
1693.042295
vioscreen_phytic
1370.264983
vioscreen_pinitol
0.010410959000000001
vioscreen_potass
2738.507192
vioscreen_procdate
10/28/15
vioscreen_proline
7.296767311
vioscreen_protanim
33.95380726
vioscreen_protein
90.29293664
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
56.33770334
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
484.0
vioscreen_retinol
420.75068489999995
vioscreen_rgrain
12.20142471
vioscreen_ribofla
1.9670961980000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.37542
vioscreen_satoco
0.177863009
vioscreen_selenium
179.5337757
vioscreen_serine
4.381040307
vioscreen_sfa100
1.067397361
vioscreen_sfa120
1.44309567
vioscreen_sfa140
4.24972576
vioscreen_sfa160
21.61547919
vioscreen_sfa170
0.239068478
vioscreen_sfa180
9.233231887
vioscreen_sfa200
0.31183561600000004
vioscreen_sfa220
0.421534206
vioscreen_sfa40
1.330684798
vioscreen_sfa60
0.744767197
vioscreen_sfa80
0.510356203
vioscreen_sfatot
41.89921072
vioscreen_sodium
5657.419178
vioscreen_sorbitol
0.7737261209999999
vioscreen_srvid
18496.0
vioscreen_starch
189.26791519999998
vioscreen_started
4/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
27.00183273
vioscreen_sweet_servings
0.62826
vioscreen_tagatose
1.457808152
vioscreen_tfa161t
0.064410954
vioscreen_tfa181t
3.5004658739999996
vioscreen_tfa182t
0.550958963
vioscreen_tgrain
15.23345061
vioscreen_thiamin
2.49235589
vioscreen_threonin
3.0187399669999997
vioscreen_time
18.0
vioscreen_totaltfa
4.206000508
vioscreen_totcla
0.21397264
vioscreen_totfolat
601.1427226
vioscreen_totsugar
86.89809503
vioscreen_tryptoph
1.027588978
vioscreen_tyrosine
2.953670805
vioscreen_user_id
18496.0
vioscreen_v_drkgr
0.321260259
vioscreen_v_orange
0.18457537100000002
vioscreen_v_other
1.337780762
vioscreen_v_potato
0.071479452
vioscreen_v_starcy
0.004684932
vioscreen_v_tomato
0.37463015200000005
vioscreen_v_total
2.294547638
vioscreen_valine
4.342520601
vioscreen_veg5_day
4.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
11439.31027
vioscreen_vita_rae
922.6124143999999
vioscreen_vita_re
1424.471832
vioscreen_vitb12
2.89167146
vioscreen_vitb6
1.9208766990000001
vioscreen_vitc
108.94676799999999
vioscreen_vitd
4.7055343
vioscreen_vitd2
0.001479452
vioscreen_vitd3
4.704082165
vioscreen_vitd_iu
188.221372
vioscreen_vite_iu
19.8332058
vioscreen_vitk
169.9171019
vioscreen_water
2696.743151
vioscreen_weight
Not provided
vioscreen_wgrain
3.031999813
vioscreen_whole_grain_servings
2.63803
vioscreen_xylitol
0.013726028000000001
vioscreen_zinc
12.30109696
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)