American Gut Project; 10317.000017317
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632904
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000017317
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
57.0
age_corrected
57.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
17317
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
24.81
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Not provided
clinical condition
I do not have this condition
collection date
2014-11-13
collection month
November
collection season
Fall
collection time
07:15
collection_timestamp
2014-11-13 07:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
Not provided
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
211.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e3d329c7460d0e0ac25886e814a7b8937d784837c1e1e96561f9b4d21b8d5f4ddbe179ad5fd084217988d72a2ef9bdff6a43b16d944c79a05ac29feb2f920794
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-83.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000017317
sample type
Mouth
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
GA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
2d2669ef0895d45f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.6453698559999999
vioscreen_a_cal
203.6553724
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.49498542
vioscreen_addsugar
49.55829409
vioscreen_adsugtot
43.28049015
vioscreen_age
214.0
vioscreen_alanine
3.863369542
vioscreen_alcohol
25.10334439
vioscreen_alcohol_servings
1.64537
vioscreen_alphacar
2459.68887
vioscreen_alphtoce
16.07462944
vioscreen_alphtoco
12.57895976
vioscreen_arginine
4.607288099
vioscreen_ash
24.29594392
vioscreen_aspartam
0.0
vioscreen_aspartic
7.797342546
vioscreen_avcarb
248.06545380000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
17013.2137
vioscreen_betacryp
115.49304369999999
vioscreen_betaine
106.4287029
vioscreen_betatoco
0.33819176700000003
vioscreen_biochana
0.01441096
vioscreen_bmi
Not provided
vioscreen_caffeine
422.436601
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.0588799999999998
vioscreen_calcium_servings
3.2794199999999996
vioscreen_calories
2254.898288
vioscreen_carbo
285.38450339999997
vioscreen_cholest
207.4277825
vioscreen_choline
385.6075771
vioscreen_clac9t11
0.11909588300000001
vioscreen_clat10c12
0.028465752
vioscreen_copper
1.757835576
vioscreen_coumest
0.19876713199999999
vioscreen_cystine
1.0722465620000001
vioscreen_d_cheese
0.261534265
vioscreen_d_milk
0.41104109299999997
vioscreen_d_tot_soym
1.058876769
vioscreen_d_total
1.058876769
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
1.626082245
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.45386294
vioscreen_discfat_oil
14.85178055
vioscreen_discfat_sol
39.57455319
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001753425
vioscreen_f_citmlb
0.86063015
vioscreen_f_nj_citmlb
0.532356199
vioscreen_f_nj_other
2.0504386169999997
vioscreen_f_nj_total
2.582822199
vioscreen_f_other
2.05274006
vioscreen_f_total
2.9133972999999997
vioscreen_fat
77.73733947
vioscreen_fiber
37.15863388
vioscreen_fibh2o
11.6108773
vioscreen_fibinso
25.58972068
vioscreen_finished
11/12/14
vioscreen_fish_servings
1.60808
vioscreen_fol_deqv
662.9374572
vioscreen_fol_nat
457.4565925
vioscreen_fol_syn
120.81870719999999
vioscreen_formontn
0.002958904
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.4
vioscreen_frtsumm
5.8
vioscreen_fructose
28.48572881
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.623342519
vioscreen_g_total
5.169287778
vioscreen_g_whl
2.545972349
vioscreen_galactos
0.629150725
vioscreen_gammtoco
10.95679514
vioscreen_gender
false
vioscreen_genistn
2.5003014969999997
vioscreen_glac
110.700717
vioscreen_gltc
122.62199270000002
vioscreen_glucose
27.41961687
vioscreen_glutamic
14.857752300000001
vioscreen_glycine
3.420657976
vioscreen_glycitn
0.381561656
vioscreen_grams
4481.015753
vioscreen_hei2010_dairy
3.6
vioscreen_hei2010_empty_calories
17.0
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
9.9
vioscreen_hei_milk
3.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.5
vioscreen_hei_sat_fat
7.0
vioscreen_hei_score
68.0
vioscreen_hei_sodium
2.8
vioscreen_hei_sol_fat_alc_add_sug
11.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
2.211863228
vioscreen_inositol
0.299780838
vioscreen_iron
15.60413634
vioscreen_isoleuc
3.5301915
vioscreen_isomalt
0.0
vioscreen_joules
9434.49726
vioscreen_juice_servings
0.6612600000000001
vioscreen_lactitol
0.0
vioscreen_lactose
11.67109643
vioscreen_legumes
0.105232876
vioscreen_leucine
6.127286895
vioscreen_line_gi
553.1498288
vioscreen_low_fat_dairy_serving
0.46356
vioscreen_lutzeax
9855.193151000001
vioscreen_lycopene
4058.1917810000004
vioscreen_lysine
5.400821382999999
vioscreen_m_egg
0.29041095899999997
vioscreen_m_fish_hi
0.9163835920000001
vioscreen_m_fish_lo
0.009232876
vioscreen_m_frank
0.091534246
vioscreen_m_meat
2.198438336
vioscreen_m_mpf
3.8246846239999996
vioscreen_m_nutsd
0.9537809190000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.609123293
vioscreen_m_soy
0.071150678
vioscreen_magnes
462.2000428
vioscreen_maltitol
0.0
vioscreen_maltose
3.762986609
vioscreen_mangan
7.581314881
vioscreen_mannitol
0.593397376
vioscreen_methhis3
14.83334091
vioscreen_methion
1.716410765
vioscreen_mfa141
0.093013711
vioscreen_mfa161
1.404767097
vioscreen_mfa181
26.21093482
vioscreen_mfa201
0.370520521
vioscreen_mfa221
0.188493159
vioscreen_mfatot
28.55750749
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.74531584
vioscreen_nccglbr
188.96834330000002
vioscreen_nccglgr
132.17907749999998
vioscreen_niacin
23.42177868
vioscreen_niacineq
37.71400096
vioscreen_nitrogen
13.10438651
vioscreen_non_fried_fish_servings
1.60808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.350219225
vioscreen_oxalic
395.4297089
vioscreen_oxalicm
386.23214900000005
vioscreen_pantothe
8.495589416
vioscreen_pectins
6.8114812979999995
vioscreen_pfa182
13.25391829
vioscreen_pfa183
1.863506829
vioscreen_pfa184
0.040082192
vioscreen_pfa204
0.093945208
vioscreen_pfa205
0.129616432
vioscreen_pfa225
0.054246578
vioscreen_pfa226
0.263095887
vioscreen_pfatot
15.78142257
vioscreen_phenylal
3.557781397
vioscreen_phosphor
1473.2142119999999
vioscreen_phytic
929.2797945
vioscreen_pinitol
0.009013698
vioscreen_potass
4715.892465999999
vioscreen_procdate
10/28/15
vioscreen_proline
4.8974789969999994
vioscreen_protanim
45.89035745
vioscreen_protein
80.32792166
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.43253692
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
759.0
vioscreen_retinol
274.0473031
vioscreen_rgrain
2.819616866
vioscreen_ribofla
2.4143558030000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.7963
vioscreen_satoco
4.0747123819999995
vioscreen_selenium
115.63349740000001
vioscreen_serine
3.754082165
vioscreen_sfa100
0.550273989
vioscreen_sfa120
1.39506861
vioscreen_sfa140
2.503643715
vioscreen_sfa160
14.01742696
vioscreen_sfa170
0.076082198
vioscreen_sfa180
6.166850385
vioscreen_sfa200
0.134794512
vioscreen_sfa220
0.177041103
vioscreen_sfa40
0.572794541
vioscreen_sfa60
0.32178083399999996
vioscreen_sfa80
0.304904112
vioscreen_sfatot
26.61790989
vioscreen_sodium
3808.165068
vioscreen_sorbitol
1.409780842
vioscreen_srvid
14533.0
vioscreen_starch
93.22227098
vioscreen_started
11/12/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.71070741
vioscreen_sweet_servings
0.9129799999999999
vioscreen_tagatose
4.049588974
vioscreen_tfa161t
0.069643836
vioscreen_tfa181t
1.504492856
vioscreen_tfa182t
0.360904181
vioscreen_tgrain
5.805369756
vioscreen_thiamin
1.6099448840000001
vioscreen_threonin
3.1086572930000003
vioscreen_time
28.0
vioscreen_totaltfa
1.988575222
vioscreen_totcla
0.147479436
vioscreen_totfolat
578.275214
vioscreen_totsugar
118.6705158
vioscreen_tryptoph
0.8591780990000001
vioscreen_tyrosine
2.7428769460000004
vioscreen_user_id
14533.0
vioscreen_v_drkgr
1.16983559
vioscreen_v_orange
0.770274039
vioscreen_v_other
1.493040822
vioscreen_v_potato
0.30956163800000003
vioscreen_v_starcy
0.003616438
vioscreen_v_tomato
0.385835621
vioscreen_v_total
4.132109174
vioscreen_valine
4.17287698
vioscreen_veg5_day
7.9
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
31414.876710000004
vioscreen_vita_rae
1799.115068
vioscreen_vita_re
3324.183219
vioscreen_vitb12
4.84271257
vioscreen_vitb6
2.729780641
vioscreen_vitc
182.36693069999998
vioscreen_vitd
6.531179099
vioscreen_vitd2
0.21369863
vioscreen_vitd3
6.317479799999999
vioscreen_vitd_iu
261.247164
vioscreen_vite_iu
20.07295992
vioscreen_vitk
492.79417810000007
vioscreen_water
4009.0897259999997
vioscreen_weight
Not provided
vioscreen_wgrain
2.98569871
vioscreen_whole_grain_servings
2.54597
vioscreen_xylitol
0.072931514
vioscreen_zinc
12.491340699999999
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily