American Gut Project; 10317.000028432
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633596
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028432
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
Not provided
age years
1.0
age_corrected
Not provided
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28432
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
2014.0
bmi
16.89
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
I eat both solid food and formula/breast milk
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
I do not have this condition
collection date
06/07/2015
collection month
June
collection season
Summer
collection time
11:55
collection_timestamp
2015-06-07 11:55
consume_animal_products_abx
No
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
Not provided
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
19.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Not provided
exercise_location
Not provided
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
73.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
4a65cbc90664cc9a7210abbf445714bb33793780ed1904b30477e8297f5004eae1546820af610626b83672fb012b329591758938596f8a5c695cd02a78ca7916
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.5
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028432
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
7f2026d9f99866a1
teethbrushing_frequency
Occasionally (1-2 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.74430149
vioscreen_addsugar
13.13484857
vioscreen_adsugtot
11.58200048
vioscreen_age
215.0
vioscreen_alanine
0.938082175
vioscreen_alcohol
0.000520548
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
387.77585619999996
vioscreen_alphtoce
5.446876672
vioscreen_alphtoco
4.344630244
vioscreen_arginine
1.29167146
vioscreen_ash
6.2196717139999995
vioscreen_aspartam
0.0
vioscreen_aspartic
2.1540823319999998
vioscreen_avcarb
51.67537457
vioscreen_bcodeid
Not provided
vioscreen_betacar
3287.304452
vioscreen_betacryp
33.56473941
vioscreen_betaine
39.2028521
vioscreen_betatoco
0.205013725
vioscreen_biochana
0.001178082
vioscreen_bmi
Not provided
vioscreen_caffeine
1.0750411359999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.54704
vioscreen_calcium_servings
1.24142
vioscreen_calories
660.4708904
vioscreen_carbo
59.85600385
vioscreen_cholest
83.46285317
vioscreen_choline
100.4701948
vioscreen_clac9t11
0.050520549000000005
vioscreen_clat10c12
0.008986301
vioscreen_copper
0.579041071
vioscreen_coumest
0.02391781
vioscreen_cystine
0.250219162
vioscreen_d_cheese
0.36572604200000003
vioscreen_d_milk
0.038904109
vioscreen_d_tot_soym
0.547041091
vioscreen_d_total
0.547041091
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
7.5271511129999995
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.3513427730000003
vioscreen_discfat_oil
16.85772688
vioscreen_discfat_sol
16.83408069
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001232877
vioscreen_f_citmlb
0.18915068699999998
vioscreen_f_nj_citmlb
0.187945201
vioscreen_f_nj_other
0.455479452
vioscreen_f_nj_total
0.643424674
vioscreen_f_other
0.455479452
vioscreen_f_total
0.64463016
vioscreen_fat
39.84126177
vioscreen_fiber
8.180903521
vioscreen_fibh2o
2.257671367
vioscreen_fibinso
5.963341449
vioscreen_finished
6/7/15
vioscreen_fish_servings
0.79404
vioscreen_fol_deqv
103.9555437
vioscreen_fol_nat
97.81595676
vioscreen_fol_syn
3.604520615
vioscreen_formontn
0.0007123289999999999
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.3
vioscreen_fructose
7.999507705
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.316684921
vioscreen_g_total
0.547287698
vioscreen_g_whl
0.230602735
vioscreen_galactos
0.27854794
vioscreen_gammtoco
9.868000856
vioscreen_gender
false
vioscreen_genistn
8.443590807
vioscreen_glac
24.81443707
vioscreen_gltc
27.44002569
vioscreen_glucose
8.422466957000001
vioscreen_glutamic
4.103397568
vioscreen_glycine
0.776712245
vioscreen_glycitn
1.4321643569999998
vioscreen_grams
633.9528682
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
13.0
vioscreen_hei2010_fatty_acids
4.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
67.7
vioscreen_hei_sodium
5.3
vioscreen_hei_sol_fat_alc_add_sug
13.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
0.5633973000000001
vioscreen_inositol
0.058410958
vioscreen_iron
3.867287497
vioscreen_isoleuc
0.99646573
vioscreen_isomalt
0.0
vioscreen_joules
2763.40839
vioscreen_juice_servings
0.00238
vioscreen_lactitol
0.0
vioscreen_lactose
2.981561697
vioscreen_legumes
0.037479452999999996
vioscreen_leucine
1.6993699169999998
vioscreen_line_gi
128.3620933
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
2752.071747
vioscreen_lycopene
430.7919092
vioscreen_lysine
1.464630378
vioscreen_m_egg
0.166054796
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.452520543
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.452520543
vioscreen_m_nutsd
0.19134245600000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.772684928
vioscreen_magnes
108.84439209999998
vioscreen_maltitol
0.0
vioscreen_maltose
1.082054828
vioscreen_mangan
1.08723295
vioscreen_mannitol
0.026794517
vioscreen_methhis3
1.1255890309999999
vioscreen_methion
0.442219188
vioscreen_mfa141
0.033972602000000005
vioscreen_mfa161
0.440821943
vioscreen_mfa181
12.91043852
vioscreen_mfa201
0.095534244
vioscreen_mfa221
0.002438356
vioscreen_mfatot
13.607178400000002
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
4.344630244
vioscreen_nccglbr
40.64624625
vioscreen_nccglgr
28.4308781
vioscreen_niacin
3.2302466819999998
vioscreen_niacineq
7.587835107999999
vioscreen_nitrogen
3.568383455
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.096274096
vioscreen_oxalic
147.93427869999996
vioscreen_oxalicm
158.94810569999999
vioscreen_pantothe
1.317013675
vioscreen_pectins
1.657835744
vioscreen_pfa182
8.774630778999999
vioscreen_pfa183
1.047315206
vioscreen_pfa184
0.002164384
vioscreen_pfa204
0.025068492
vioscreen_pfa205
0.01512329
vioscreen_pfa225
0.0038356159999999996
vioscreen_pfa226
0.028438354
vioscreen_pfatot
9.923643515
vioscreen_phenylal
1.016356168
vioscreen_phosphor
396.25235449999997
vioscreen_phytic
287.2186216
vioscreen_pinitol
0.048410959
vioscreen_potass
986.2480308
vioscreen_procdate
10/28/15
vioscreen_proline
1.49736997
vioscreen_protanim
10.09013672
vioscreen_protein
21.772711100000002
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.68019183
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
404.0
vioscreen_retinol
139.048887
vioscreen_rgrain
0.35095892100000003
vioscreen_ribofla
0.461616495
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.07055
vioscreen_satoco
0.0
vioscreen_selenium
28.31495345
vioscreen_serine
1.105013662
vioscreen_sfa100
0.36284932200000003
vioscreen_sfa120
0.379424631
vioscreen_sfa140
1.3431234280000002
vioscreen_sfa160
7.071479023999999
vioscreen_sfa170
0.077315067
vioscreen_sfa180
2.9190406280000003
vioscreen_sfa200
0.09147945
vioscreen_sfa220
0.068602732
vioscreen_sfa40
0.45021918299999997
vioscreen_sfa60
0.257835618
vioscreen_sfa80
0.165479456
vioscreen_sfatot
13.350109699999997
vioscreen_sodium
927.6784247000002
vioscreen_sorbitol
0.340164394
vioscreen_srvid
18846.0
vioscreen_starch
13.660685999999998
vioscreen_started
6/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.75761719
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
1.7857533909999999
vioscreen_tfa161t
0.022739727
vioscreen_tfa181t
0.730054798
vioscreen_tfa182t
0.202630134
vioscreen_tgrain
0.528027386
vioscreen_thiamin
0.315424671
vioscreen_threonin
0.842630214
vioscreen_time
14.0
vioscreen_totaltfa
0.9685204909999999
vioscreen_totcla
0.059534250999999996
vioscreen_totfolat
101.4204837
vioscreen_totsugar
31.82284889
vioscreen_tryptoph
0.261862998
vioscreen_tyrosine
0.809452005
vioscreen_user_id
18846.0
vioscreen_v_drkgr
0.136794521
vioscreen_v_orange
0.131232881
vioscreen_v_other
0.10663013199999999
vioscreen_v_potato
0.18673973600000002
vioscreen_v_starcy
0.156246572
vioscreen_v_tomato
0.024958906
vioscreen_v_total
0.7426027059999999
vioscreen_valine
1.165452011
vioscreen_veg5_day
1.6
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
1.5
vioscreen_visit
1.0
vioscreen_vita_iu
6293.282877000001
vioscreen_vita_rae
430.5472603
vioscreen_vita_re
722.0446062000001
vioscreen_vitb12
1.1995068690000001
vioscreen_vitb6
0.49452059
vioscreen_vitc
34.30739512
vioscreen_vitd
1.126410915
vioscreen_vitd2
0.0
vioscreen_vitd3
1.126410915
vioscreen_vitd_iu
45.05643662
vioscreen_vite_iu
6.483369007
vioscreen_vitk
119.36972390000001
vioscreen_water
510.847089
vioscreen_weight
Not provided
vioscreen_wgrain
0.17709588899999998
vioscreen_whole_grain_servings
0.2306
vioscreen_xylitol
0.013315068999999999
vioscreen_zinc
3.6223288339999997
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
9.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)