American Gut Project; 10317.000020524
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633845
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-10T05:20:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020524
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
child
age years
3.0
age_corrected
3.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20524
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
2012.0
bmi
17.36
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
Not provided
collection date
2015-07-30
collection month
July
collection season
Summer
collection time
19:20
collection_timestamp
2015-07-30 19:20
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Hong Kong
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
29.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
96.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
84ffafa448c9cbc85c03ba01f92d83dba5fe64cd9fe0845ef9b67228a34a8d88c419cb20e9670cf44d8cba26597ee8ae0cda83c5626d69265b7b07b2b6b785ce
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
Month
latitude
50.6
level_of_education
Not provided
liver_disease
I do not have this condition
livingwith
Yes
longitude
-3.6
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000020524
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Not provided
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
be92b54b3c53d4a5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.596329195
vioscreen_addsugar
44.13909461
vioscreen_adsugtot
21.61452135
vioscreen_age
215.0
vioscreen_alanine
2.06262993
vioscreen_alcohol
0.001534247
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
4338.216438
vioscreen_alphtoce
10.07739525
vioscreen_alphtoco
9.128958423
vioscreen_arginine
2.604548039
vioscreen_ash
12.55216315
vioscreen_aspartam
0.0
vioscreen_aspartic
3.929999197
vioscreen_avcarb
149.19548369999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
14101.516440000001
vioscreen_betacryp
87.47104559
vioscreen_betaine
71.69752783
vioscreen_betatoco
0.15260275199999998
vioscreen_biochana
0.0024657529999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.049839999999999995
vioscreen_calcium_servings
1.47184
vioscreen_calories
1206.073373
vioscreen_carbo
173.3380779
vioscreen_cholest
59.77227098
vioscreen_choline
182.14702480000003
vioscreen_clac9t11
0.045890411
vioscreen_clat10c12
0.011534245
vioscreen_copper
0.9624932279999999
vioscreen_coumest
0.224767126
vioscreen_cystine
0.514109531
vioscreen_d_cheese
0.033369864
vioscreen_d_milk
0.016465754
vioscreen_d_tot_soym
0.049835618
vioscreen_d_total
0.049835618
vioscreen_d_yogurt
0.0
vioscreen_daidzein
2.169589275
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.031178096
vioscreen_discfat_oil
8.352274187
vioscreen_discfat_sol
31.84295805
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002136986
vioscreen_f_citmlb
0.596137018
vioscreen_f_nj_citmlb
0.593041114
vioscreen_f_nj_other
1.493835616
vioscreen_f_nj_total
2.086876773
vioscreen_f_other
1.493835616
vioscreen_f_total
2.0900001
vioscreen_fat
46.98271083
vioscreen_fiber
24.14350653
vioscreen_fibh2o
5.782465352000001
vioscreen_fibinso
18.52262816
vioscreen_finished
7/19/15
vioscreen_fish_servings
0.53596
vioscreen_fol_deqv
621.6060788
vioscreen_fol_nat
228.60389550000002
vioscreen_fol_syn
231.14160959999998
vioscreen_formontn
0.0015616439999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.2
vioscreen_fructose
21.24638271
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.063068463
vioscreen_g_total
2.112301343
vioscreen_g_whl
1.0492327959999999
vioscreen_galactos
0.10720550300000001
vioscreen_gammtoco
8.56605442
vioscreen_gender
false
vioscreen_genistn
3.5640554769999997
vioscreen_glac
67.24496468
vioscreen_gltc
76.20520655
vioscreen_glucose
26.38259846
vioscreen_glutamic
7.111398357000001
vioscreen_glycine
1.946575175
vioscreen_glycitn
0.459232863
vioscreen_grams
1611.471575
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
9.2
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.8
vioscreen_hei_sat_fat
9.1
vioscreen_hei_score
64.3
vioscreen_hei_sodium
3.8
vioscreen_hei_sol_fat_alc_add_sug
9.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.043013648
vioscreen_inositol
0.119589045
vioscreen_iron
15.66356218
vioscreen_isoleuc
1.627123355
vioscreen_isomalt
0.0
vioscreen_joules
5046.208904
vioscreen_juice_servings
0.00625
vioscreen_lactitol
0.0
vioscreen_lactose
0.263479447
vioscreen_legumes
0.0
vioscreen_leucine
2.73827406
vioscreen_line_gi
402.1670377
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
10549.6
vioscreen_lycopene
3041.608562
vioscreen_lysine
2.4608767990000002
vioscreen_m_egg
0.004164384
vioscreen_m_fish_hi
0.305452049
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.668328774
vioscreen_m_meat
0.946274013
vioscreen_m_mpf
2.4876986569999997
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5676438420000001
vioscreen_m_soy
0.232191781
vioscreen_magnes
261.5171019
vioscreen_maltitol
0.0
vioscreen_maltose
5.754219285
vioscreen_mangan
3.180246682
vioscreen_mannitol
0.458356131
vioscreen_methhis3
8.891725974
vioscreen_methion
0.7721917979999999
vioscreen_mfa141
0.037643835
vioscreen_mfa161
0.660109638
vioscreen_mfa181
23.17651969
vioscreen_mfa201
0.16139726
vioscreen_mfa221
0.061780825
vioscreen_mfatot
24.1978917
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.128958423
vioscreen_nccglbr
139.7587115
vioscreen_nccglgr
97.76187928
vioscreen_niacin
16.66079436
vioscreen_niacineq
23.79079088
vioscreen_nitrogen
6.460191701
vioscreen_non_fried_fish_servings
0.53596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.840493231
vioscreen_oxalic
439.5806079
vioscreen_oxalicm
464.1651541
vioscreen_pantothe
3.019479746
vioscreen_pectins
5.058849262
vioscreen_pfa182
7.664520682000001
vioscreen_pfa183
0.6636712060000001
vioscreen_pfa184
0.013369863000000001
vioscreen_pfa204
0.048410959
vioscreen_pfa205
0.048630137000000004
vioscreen_pfa225
0.025534246
vioscreen_pfa226
0.089753431
vioscreen_pfatot
8.592876445
vioscreen_phenylal
1.645863321
vioscreen_phosphor
625.9947346
vioscreen_phytic
391.7131421
vioscreen_pinitol
0.0019178079999999998
vioscreen_potass
2464.075
vioscreen_procdate
10/28/15
vioscreen_proline
2.027534046
vioscreen_protanim
18.23668531
vioscreen_protein
39.7408979
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.50427547
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
278.0
vioscreen_retinol
168.7726241
vioscreen_rgrain
1.652164156
vioscreen_ribofla
1.133479539
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.02216
vioscreen_satoco
0.0
vioscreen_selenium
52.90906999
vioscreen_serine
1.66013702
vioscreen_sfa100
0.035561643
vioscreen_sfa120
0.078328768
vioscreen_sfa140
0.391506874
vioscreen_sfa160
6.771533872000001
vioscreen_sfa170
0.039232876
vioscreen_sfa180
3.48846586
vioscreen_sfa200
0.069178082
vioscreen_sfa220
0.10364383
vioscreen_sfa40
0.013041097
vioscreen_sfa60
0.0041917809999999995
vioscreen_sfa80
0.005041096
vioscreen_sfatot
11.10531491
vioscreen_sodium
1894.948973
vioscreen_sorbitol
1.222410939
vioscreen_srvid
20185.0
vioscreen_starch
44.8858064
vioscreen_started
7/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
15.80284808
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0019178079999999998
vioscreen_tfa161t
0.029068495
vioscreen_tfa181t
4.105944991
vioscreen_tfa182t
0.9364657470000001
vioscreen_tgrain
2.8080275439999998
vioscreen_thiamin
1.148712409
vioscreen_threonin
1.571095589
vioscreen_time
18.0
vioscreen_totaltfa
5.099589309
vioscreen_totcla
0.057726020999999995
vioscreen_totfolat
459.7454623
vioscreen_totsugar
71.00451627
vioscreen_tryptoph
0.428356265
vioscreen_tyrosine
1.2145477709999999
vioscreen_user_id
20185.0
vioscreen_v_drkgr
0.809643806
vioscreen_v_orange
0.7678630670000001
vioscreen_v_other
0.422876729
vioscreen_v_potato
0.151479444
vioscreen_v_starcy
0.259890413
vioscreen_v_tomato
0.411205428
vioscreen_v_total
2.822986007
vioscreen_valine
1.843534454
vioscreen_veg5_day
5.5
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
27752.77808
vioscreen_vita_rae
1528.30274
vioscreen_vita_re
2887.8335620000003
vioscreen_vitb12
2.7903288539999997
vioscreen_vitb6
1.8338082930000001
vioscreen_vitc
136.9934717
vioscreen_vitd
3.1209589710000003
vioscreen_vitd2
0.0
vioscreen_vitd3
3.1209589710000003
vioscreen_vitd_iu
124.8383588
vioscreen_vite_iu
13.6239726
vioscreen_vitk
367.80980310000007
vioscreen_water
1343.228339
vioscreen_weight
Not provided
vioscreen_wgrain
1.155808122
vioscreen_whole_grain_servings
1.0492299999999999
vioscreen_xylitol
0.046465756
vioscreen_zinc
9.227508294
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
16.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Rarely (less than once/week)