American Gut Project; 10317.000029393
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633709
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029393
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29393
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
28.53
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-23
collection month
June
collection season
Summer
collection time
11:00
collection_timestamp
2015-06-23 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
76.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d4b1ad0df798ffac83113222a174efeaf9eb3e7337a2ada04247609829afa26024eb8568250f747a809ccfb9c3f03ce84a23d71fb71ac39a2318def8668dfea3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.0
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029393
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
53021599f8d630cc
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.104739725
vioscreen_a_cal
13.07684878
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.0894792110000004
vioscreen_addsugar
27.45345141
vioscreen_adsugtot
26.03142391
vioscreen_age
215.0
vioscreen_alanine
5.11052012
vioscreen_alcohol
1.6377260809999998
vioscreen_alcohol_servings
0.10474000000000001
vioscreen_alphacar
6384.390411
vioscreen_alphtoce
19.18863041
vioscreen_alphtoco
17.88019183
vioscreen_arginine
6.278959091
vioscreen_ash
23.96244114
vioscreen_aspartam
0.0
vioscreen_aspartic
10.41964295
vioscreen_avcarb
145.220869
vioscreen_bcodeid
Not provided
vioscreen_betacar
22381.63699
vioscreen_betacryp
116.95810149999998
vioscreen_betaine
58.08413956
vioscreen_betatoco
0.501123256
vioscreen_biochana
0.009945206
vioscreen_bmi
Not provided
vioscreen_caffeine
469.7174228999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.4616200000000001
vioscreen_calcium_servings
3.4081900000000003
vioscreen_calories
1757.992637
vioscreen_carbo
184.4691353
vioscreen_cholest
409.5360445
vioscreen_choline
623.7898545
vioscreen_clac9t11
0.050904104000000006
vioscreen_clat10c12
0.012082191
vioscreen_copper
1.7613152490000001
vioscreen_coumest
0.114219174
vioscreen_cystine
1.398191687
vioscreen_d_cheese
0.149095896
vioscreen_d_milk
0.56446575
vioscreen_d_tot_soym
1.461616579
vioscreen_d_total
1.461616579
vioscreen_d_yogurt
0.7476438759999999
vioscreen_daidzein
3.0621919810000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.1276713330000003
vioscreen_discfat_oil
28.04531785
vioscreen_discfat_sol
18.11109669
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000630137
vioscreen_f_citmlb
0.802273936
vioscreen_f_nj_citmlb
0.787863034
vioscreen_f_nj_other
0.844054758
vioscreen_f_nj_total
1.631917875
vioscreen_f_other
0.844054758
vioscreen_f_total
1.6463564519999998
vioscreen_fat
76.17962329
vioscreen_fiber
39.24909835
vioscreen_fibh2o
9.35526006
vioscreen_fibinso
30.07764073
vioscreen_finished
6/22/15
vioscreen_fish_servings
5.45038
vioscreen_fol_deqv
611.2140839
vioscreen_fol_nat
605.7484161
vioscreen_fol_syn
3.21326018
vioscreen_formontn
0.004876712
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.3
vioscreen_fructose
22.25561858
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.126739732
vioscreen_g_total
1.759945219
vioscreen_g_whl
1.633205466
vioscreen_galactos
0.9773149879999999
vioscreen_gammtoco
10.86830051
vioscreen_gender
false
vioscreen_genistn
4.203862773
vioscreen_glac
45.64610445
vioscreen_gltc
54.58739833
vioscreen_glucose
20.41402772
vioscreen_glutamic
18.6346867
vioscreen_glycine
4.37772568
vioscreen_glycitn
0.527643826
vioscreen_grams
4167.178425
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
79.9
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
2.656712195
vioscreen_inositol
0.19227397300000001
vioscreen_iron
13.22117669
vioscreen_isoleuc
4.56301303
vioscreen_isomalt
0.0
vioscreen_joules
7355.441781
vioscreen_juice_servings
0.02885
vioscreen_lactitol
0.0
vioscreen_lactose
17.97747886
vioscreen_legumes
0.181095886
vioscreen_leucine
7.741753397999999
vioscreen_line_gi
388.29190919999996
vioscreen_low_fat_dairy_serving
0.758
vioscreen_lutzeax
14071.090409999999
vioscreen_lycopene
11449.79726
vioscreen_lysine
7.201205319
vioscreen_m_egg
1.5049863209999998
vioscreen_m_fish_hi
2.383808293
vioscreen_m_fish_lo
0.72230141
vioscreen_m_frank
0.0
vioscreen_m_meat
0.7476438759999999
vioscreen_m_mpf
5.020137254
vioscreen_m_nutsd
3.4106849980000002
vioscreen_m_organ
0.0
vioscreen_m_poult
1.166493121
vioscreen_m_soy
0.183369864
vioscreen_magnes
490.8901969
vioscreen_maltitol
0.0
vioscreen_maltose
0.647808294
vioscreen_mangan
8.351726375
vioscreen_mannitol
1.164958797
vioscreen_methhis3
16.84515063
vioscreen_methion
2.299342493
vioscreen_mfa141
0.039945205
vioscreen_mfa161
1.14569861
vioscreen_mfa181
30.37296126
vioscreen_mfa201
0.7084383190000001
vioscreen_mfa221
0.439232939
vioscreen_mfatot
32.86605576
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
17.88019183
vioscreen_nccglbr
88.12779324
vioscreen_nccglgr
61.63624251
vioscreen_niacin
26.24186376
vioscreen_niacineq
44.28276434
vioscreen_nitrogen
16.63863041
vioscreen_non_fried_fish_servings
5.45038
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.367917581
vioscreen_oxalic
419.3311644
vioscreen_oxalicm
436.9225171
vioscreen_pantothe
8.099396672000001
vioscreen_pectins
8.504629976
vioscreen_pfa182
14.94884953
vioscreen_pfa183
1.174520414
vioscreen_pfa184
0.09660274599999999
vioscreen_pfa204
0.222410981
vioscreen_pfa205
0.30775343
vioscreen_pfa225
0.121972594
vioscreen_pfa226
0.66761646
vioscreen_pfatot
17.66142311
vioscreen_phenylal
4.533369676
vioscreen_phosphor
1705.7321920000002
vioscreen_phytic
910.9985445
vioscreen_pinitol
0.021726027999999998
vioscreen_potass
5326.800685
vioscreen_procdate
10/28/15
vioscreen_proline
5.32550701
vioscreen_protanim
62.38599636
vioscreen_protein
101.8301156
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.43084867
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
378.0
vioscreen_retinol
301.1239726
vioscreen_rgrain
0.157561629
vioscreen_ribofla
2.5551506980000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
6.7472
vioscreen_satoco
0.0
vioscreen_selenium
135.0745398
vioscreen_serine
5.049260555
vioscreen_sfa100
0.202438354
vioscreen_sfa120
0.31380822199999997
vioscreen_sfa140
1.214246525
vioscreen_sfa160
11.36882224
vioscreen_sfa170
0.05076712
vioscreen_sfa180
3.879671112
vioscreen_sfa200
0.288630133
vioscreen_sfa220
0.557041074
vioscreen_sfa40
0.210438349
vioscreen_sfa60
0.152465758
vioscreen_sfa80
0.143534245
vioscreen_sfatot
18.83531678
vioscreen_sodium
3420.458904
vioscreen_sorbitol
0.768767056
vioscreen_srvid
19944.0
vioscreen_starch
32.07051584
vioscreen_started
6/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.23575289
vioscreen_sweet_servings
0.0
vioscreen_tagatose
5.348575623
vioscreen_tfa161t
0.024191781000000002
vioscreen_tfa181t
0.942739659
vioscreen_tfa182t
0.152356166
vioscreen_tgrain
1.761287491
vioscreen_thiamin
1.380356295
vioscreen_threonin
4.154356405
vioscreen_time
28.0
vioscreen_totaltfa
1.169041213
vioscreen_totcla
0.063589044
vioscreen_totfolat
608.9616437999999
vioscreen_totsugar
98.11470462
vioscreen_tryptoph
1.0826300629999999
vioscreen_tyrosine
3.541616947
vioscreen_user_id
19944.0
vioscreen_v_drkgr
1.675260194
vioscreen_v_orange
1.119451988
vioscreen_v_other
1.673506896
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.121123285
vioscreen_v_tomato
2.181561697
vioscreen_v_total
6.77093255
vioscreen_valine
5.343479104
vioscreen_veg5_day
12.6
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
13.5
vioscreen_visit
1.0
vioscreen_vita_iu
43724.80548
vioscreen_vita_rae
2437.1501710000002
vioscreen_vita_re
4573.179795
vioscreen_vitb12
6.161589656
vioscreen_vitb6
2.652822165
vioscreen_vitc
279.94957189999997
vioscreen_vitd
14.42646752
vioscreen_vitd2
0.001178082
vioscreen_vitd3
14.42526086
vioscreen_vitd_iu
577.0587008
vioscreen_vite_iu
26.67728756
vioscreen_vitk
744.2936643999999
vioscreen_water
3797.3609590000005
vioscreen_weight
Not provided
vioscreen_wgrain
1.6037259869999998
vioscreen_whole_grain_servings
1.63321
vioscreen_xylitol
0.064493158
vioscreen_zinc
12.505835300000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
70.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)