American Gut Project; 10317.000030117
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634126
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030117
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
72.0
age_corrected
72.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030117
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1943.0
bmi
23.13
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/11/2015
collection month
August
collection season
Summer
collection time
07:45
collection_timestamp
2015-08-11 07:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
67.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Not provided
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
d72057e5780affea3a5d960a73c66c5e7d511cae67da20dc648ae0fcd1768cf0e44525c22ea99f726f32cf31d7c0a5cfd13b1b4460dc5ed99cac464fad2c057b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000030117
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
Not provided
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
7394b522f0213274
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.208465827
vioscreen_a_cal
164.0280929
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.85931213
vioscreen_addsugar
66.51452804
vioscreen_adsugtot
61.56219499
vioscreen_age
215.0
vioscreen_alanine
3.925425072
vioscreen_alcohol
17.12695714
vioscreen_alcohol_servings
1.2084700000000002
vioscreen_alphacar
1454.017637
vioscreen_alphtoce
16.4662203
vioscreen_alphtoco
14.47013725
vioscreen_arginine
4.446026528
vioscreen_ash
26.32583209
vioscreen_aspartam
0.0
vioscreen_aspartic
8.484193065
vioscreen_avcarb
312.6652183
vioscreen_bcodeid
Not provided
vioscreen_betacar
5737.908562
vioscreen_betacryp
440.05719180000006
vioscreen_betaine
194.9934503
vioscreen_betatoco
0.57452054
vioscreen_biochana
0.042383562
vioscreen_bmi
Not provided
vioscreen_caffeine
310.00629280000004
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.34381
vioscreen_calcium_servings
4.3970400000000005
vioscreen_calories
2525.866096
vioscreen_carbo
347.1020762
vioscreen_cholest
250.41847169999997
vioscreen_choline
464.97906680000006
vioscreen_clac9t11
0.069424653
vioscreen_clat10c12
0.012383561999999999
vioscreen_copper
2.448602713
vioscreen_coumest
0.09693151
vioscreen_cystine
1.060246465
vioscreen_d_cheese
0.47961643200000004
vioscreen_d_milk
1.113945195
vioscreen_d_tot_soym
2.3438085269999998
vioscreen_d_total
2.3438085269999998
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.12364382800000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.2493973410000003
vioscreen_discfat_oil
40.01394745
vioscreen_discfat_sol
27.57334386
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0014246570000000002
vioscreen_f_citmlb
1.6398631469999998
vioscreen_f_nj_citmlb
0.886054888
vioscreen_f_nj_other
1.391451985
vioscreen_f_nj_total
2.277534046
vioscreen_f_other
1.391451985
vioscreen_f_total
3.031342305
vioscreen_fat
81.65816567
vioscreen_fiber
34.41896404
vioscreen_fibh2o
9.811067262
vioscreen_fibinso
24.61506849
vioscreen_finished
8/10/15
vioscreen_fish_servings
2.09731
vioscreen_fol_deqv
1056.532106
vioscreen_fol_nat
540.0967893999999
vioscreen_fol_syn
303.70385269999997
vioscreen_formontn
0.006575343000000001
vioscreen_fried_fish_servings
0.21385
vioscreen_fried_food_servings
0.08219
vioscreen_frt5_day
4.0
vioscreen_frtsumm
6.1
vioscreen_fructose
32.46293076
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
4.955342332
vioscreen_g_total
7.128986515
vioscreen_g_whl
2.173725954
vioscreen_galactos
1.238904059
vioscreen_gammtoco
17.3487385
vioscreen_gender
false
vioscreen_genistn
0.12953424300000002
vioscreen_glac
160.9849101
vioscreen_gltc
176.95740580000003
vioscreen_glucose
34.59605362
vioscreen_glutamic
16.99534193
vioscreen_glycine
3.28438403
vioscreen_glycitn
0.009972601999999999
vioscreen_grams
4390.37363
vioscreen_hei2010_dairy
7.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
3.3
vioscreen_hei2010_protien_foods
4.7
vioscreen_hei2010_refined_grains
9.4
vioscreen_hei2010_score
83.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.7
vioscreen_hei_drk_g_org_veg_leg
2.9
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
9.3
vioscreen_hei_milk
7.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.4
vioscreen_hei_score
80.8
vioscreen_hei_sodium
3.2
vioscreen_hei_sol_fat_alc_add_sug
16.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
2.2348219780000003
vioscreen_inositol
0.399726011
vioscreen_iron
22.30298721
vioscreen_isoleuc
3.7990408280000003
vioscreen_isomalt
0.0
vioscreen_joules
10568.223970000001
vioscreen_juice_servings
1.5076200000000002
vioscreen_lactitol
0.0
vioscreen_lactose
25.34605094
vioscreen_legumes
0.446136976
vioscreen_leucine
6.747725813
vioscreen_line_gi
814.5431507000001
vioscreen_low_fat_dairy_serving
0.80085
vioscreen_lutzeax
2925.833904
vioscreen_lycopene
11174.932190000001
vioscreen_lysine
5.684629843
vioscreen_m_egg
0.43810955700000004
vioscreen_m_fish_hi
0.705150698
vioscreen_m_fish_lo
0.48991782799999994
vioscreen_m_frank
0.34501367899999996
vioscreen_m_meat
0.571178029
vioscreen_m_mpf
2.9999177280000002
vioscreen_m_nutsd
0.678219186
vioscreen_m_organ
0.315835613
vioscreen_m_poult
0.572849347
vioscreen_m_soy
0.002219178
vioscreen_magnes
458.1026541
vioscreen_maltitol
0.0
vioscreen_maltose
3.0469860339999997
vioscreen_mangan
6.850903655
vioscreen_mannitol
0.59454793
vioscreen_methhis3
9.795561992
vioscreen_methion
1.8709317140000001
vioscreen_mfa141
0.080246573
vioscreen_mfa161
0.7561643840000001
vioscreen_mfa181
28.27207566
vioscreen_mfa201
0.413068547
vioscreen_mfa221
0.123671221
vioscreen_mfatot
29.85129495
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.47013725
vioscreen_nccglbr
237.96774399999998
vioscreen_nccglgr
166.4734696
vioscreen_niacin
27.71607716
vioscreen_niacineq
43.35369221
vioscreen_nitrogen
14.31739753
vioscreen_non_fried_fish_servings
1.88346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.650054848
vioscreen_oxalic
301.9889127
vioscreen_oxalicm
284.2972603
vioscreen_pantothe
7.660219125
vioscreen_pectins
5.798356566
vioscreen_pfa182
20.31468322
vioscreen_pfa183
2.263944945
vioscreen_pfa184
0.028684932000000003
vioscreen_pfa204
0.13380822
vioscreen_pfa205
0.104931505
vioscreen_pfa225
0.042082191
vioscreen_pfa226
0.21098630699999998
vioscreen_pfatot
23.22860392
vioscreen_phenylal
3.9577265489999998
vioscreen_phosphor
1711.8311640000002
vioscreen_phytic
989.4979452
vioscreen_pinitol
0.008739726
vioscreen_potass
4807.975
vioscreen_procdate
10/28/15
vioscreen_proline
5.995040266
vioscreen_protanim
49.48247003
vioscreen_protein
88.72007706
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.22449433
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
215.0
vioscreen_retinol
1142.564384
vioscreen_rgrain
4.283589402
vioscreen_ribofla
3.147918116
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.28175
vioscreen_satoco
0.0
vioscreen_selenium
129.7661815
vioscreen_serine
4.172163621
vioscreen_sfa100
0.437260249
vioscreen_sfa120
0.865150682
vioscreen_sfa140
1.871260468
vioscreen_sfa160
11.75018996
vioscreen_sfa170
0.08813700199999999
vioscreen_sfa180
5.620000803
vioscreen_sfa200
0.213616442
vioscreen_sfa220
0.17904107100000002
vioscreen_sfa40
0.516712304
vioscreen_sfa60
0.257315063
vioscreen_sfa80
0.218986281
vioscreen_sfatot
22.35602927
vioscreen_sodium
4150.986986
vioscreen_sorbitol
1.296575175
vioscreen_srvid
20366.0
vioscreen_starch
121.0584225
vioscreen_started
8/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
63.40647474
vioscreen_sweet_servings
0.8718799999999999
vioscreen_tagatose
6.646301771
vioscreen_tfa161t
0.033643837
vioscreen_tfa181t
2.177506789
vioscreen_tfa182t
0.446931478
vioscreen_tgrain
7.484301423
vioscreen_thiamin
2.2273695019999997
vioscreen_threonin
3.260026822
vioscreen_time
58.0
vioscreen_totaltfa
2.728657427
vioscreen_totcla
0.083589047
vioscreen_totfolat
843.8005137
vioscreen_totsugar
162.0854773
vioscreen_tryptoph
0.93904118
vioscreen_tyrosine
3.0273153230000003
vioscreen_user_id
20366.0
vioscreen_v_drkgr
0.33202740399999997
vioscreen_v_orange
0.251479475
vioscreen_v_other
1.120493097
vioscreen_v_potato
0.782712335
vioscreen_v_starcy
0.09087671800000001
vioscreen_v_tomato
0.945369773
vioscreen_v_total
3.5229866760000004
vioscreen_valine
4.636493338
vioscreen_veg5_day
4.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.8
vioscreen_visit
1.0
vioscreen_vita_iu
14949.494519999998
vioscreen_vita_rae
1699.643322
vioscreen_vita_re
2256.723973
vioscreen_vitb12
10.0954242
vioscreen_vitb6
2.631972389
vioscreen_vitc
241.24516269999998
vioscreen_vitd
8.725862852999999
vioscreen_vitd2
0.001260274
vioscreen_vitd3
8.724657534
vioscreen_vitd_iu
349.0345141
vioscreen_vite_iu
21.56369729
vioscreen_vitk
161.3454944
vioscreen_water
3858.6815070000002
vioscreen_weight
Not provided
vioscreen_wgrain
3.2007123560000004
vioscreen_whole_grain_servings
2.17373
vioscreen_xylitol
0.046082200999999996
vioscreen_zinc
15.5953125
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
69.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)