10317.000028857; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633262
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:27Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028857
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28857
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1958.0
bmi
29.45
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-16
collection month
June
collection season
Summer
collection time
09:45
collection_timestamp
2015-06-16 09:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
Iran, Islamic Republic of
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
30.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
152.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
00396850041060dbc63d5e6c0f09b56a35a45cf37db489a16fa57e0f7fda3f9bdc01728eda66e3f0828bf50a14e889b1b80cf640290b126c55099e344de442c0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028857
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
9a6fcecb519b9a12
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.601095874
vioscreen_a_cal
71.26701092
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.835726134
vioscreen_addsugar
22.59810841
vioscreen_adsugtot
19.87060279
vioscreen_age
215.0
vioscreen_alanine
2.1652051119999998
vioscreen_alcohol
8.769150658
vioscreen_alcohol_servings
0.6011
vioscreen_alphacar
1808.45137
vioscreen_alphtoce
10.77621736
vioscreen_alphtoco
10.22479399
vioscreen_arginine
2.6743289480000003
vioscreen_ash
25.55061002
vioscreen_aspartam
10.70342466
vioscreen_aspartic
4.697917447
vioscreen_avcarb
145.9040668
vioscreen_bcodeid
Not provided
vioscreen_betacar
12733.39726
vioscreen_betacryp
311.7428082
vioscreen_betaine
200.45044950000002
vioscreen_betatoco
0.276520528
vioscreen_biochana
0.010739727
vioscreen_bmi
Not provided
vioscreen_caffeine
869.7064212000001
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.81893
vioscreen_calcium_servings
2.5134
vioscreen_calories
1267.3973460000002
vioscreen_carbo
180.4134204
vioscreen_cholest
59.94942744
vioscreen_choline
249.46372000000002
vioscreen_clac9t11
0.034712332
vioscreen_clat10c12
0.006547945
vioscreen_copper
1.4346298430000002
vioscreen_coumest
0.643013732
vioscreen_cystine
0.608301283
vioscreen_d_cheese
0.13545206099999998
vioscreen_d_milk
0.29180820399999996
vioscreen_d_tot_soym
0.818931517
vioscreen_d_total
0.818931517
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.6450685270000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.7634794890000001
vioscreen_discfat_oil
18.77112318
vioscreen_discfat_sol
10.47060079
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0031232879999999997
vioscreen_f_citmlb
0.86523287
vioscreen_f_nj_citmlb
0.8600548309999999
vioscreen_f_nj_other
1.309479345
vioscreen_f_nj_total
2.169534427
vioscreen_f_other
1.309479345
vioscreen_f_total
2.174712382
vioscreen_fat
39.97857181
vioscreen_fiber
34.51161976
vioscreen_fibh2o
15.872137200000001
vioscreen_fibinso
18.63010889
vioscreen_finished
5/28/15
vioscreen_fish_servings
1.9265400000000001
vioscreen_fol_deqv
379.4787243
vioscreen_fol_nat
344.26635269999997
vioscreen_fol_syn
20.71328794
vioscreen_formontn
0.005123288
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.3
vioscreen_fructose
23.0901113
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.22706859
vioscreen_g_total
3.615781183
vioscreen_g_whl
2.388712342
vioscreen_galactos
0.643945229
vioscreen_gammtoco
4.364219018
vioscreen_gender
false
vioscreen_genistn
0.257178069
vioscreen_glac
65.53548801
vioscreen_gltc
73.60732021
vioscreen_glucose
21.23742375
vioscreen_glutamic
9.238163527000001
vioscreen_glycine
1.940931681
vioscreen_glycitn
0.000027399999999999995
vioscreen_grams
5243.480137
vioscreen_hei2010_dairy
5.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
85.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.9
vioscreen_hei_score
84.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.15427405
vioscreen_inositol
0.085698632
vioscreen_iron
9.156932256000001
vioscreen_isoleuc
1.945397113
vioscreen_isomalt
0.0
vioscreen_joules
5302.790411
vioscreen_juice_servings
0.010329999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
9.880493499
vioscreen_legumes
0.144219176
vioscreen_leucine
3.3595890410000004
vioscreen_line_gi
387.4873716
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
11155.31986
vioscreen_lycopene
6229.093836
vioscreen_lysine
2.875753492
vioscreen_m_egg
0.007041095
vioscreen_m_fish_hi
0.647452075
vioscreen_m_fish_lo
0.45041094200000004
vioscreen_m_frank
0.018465753
vioscreen_m_meat
0.14504109199999998
vioscreen_m_mpf
1.700630083
vioscreen_m_nutsd
1.087616385
vioscreen_m_organ
0.0
vioscreen_m_poult
0.439315085
vioscreen_m_soy
0.000109589
vioscreen_magnes
371.5034675
vioscreen_maltitol
0.0
vioscreen_maltose
3.165369488
vioscreen_mangan
4.526273879
vioscreen_mannitol
0.555808164
vioscreen_methhis3
5.664931373
vioscreen_methion
0.930493164
vioscreen_mfa141
0.014958903
vioscreen_mfa161
0.524410927
vioscreen_mfa181
17.9611502
vioscreen_mfa201
0.23449314100000002
vioscreen_mfa221
0.108054791
vioscreen_mfatot
18.92084627
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
10.22479399
vioscreen_nccglbr
109.12521399999999
vioscreen_nccglgr
76.32382813
vioscreen_niacin
18.95529083
vioscreen_niacineq
27.43852205
vioscreen_nitrogen
8.463779564
vioscreen_non_fried_fish_servings
1.9265400000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.0044384259999999
vioscreen_oxalic
449.0701199
vioscreen_oxalicm
496.9350171
vioscreen_pantothe
9.202795242999999
vioscreen_pectins
5.042575449
vioscreen_pfa182
6.605452027999999
vioscreen_pfa183
0.698685027
vioscreen_pfa184
0.023506849
vioscreen_pfa204
0.039342465
vioscreen_pfa205
0.078904113
vioscreen_pfa225
0.03252055
vioscreen_pfa226
0.171150688
vioscreen_pfatot
7.691015625
vioscreen_phenylal
2.044411019
vioscreen_phosphor
927.766524
vioscreen_phytic
724.4857877000001
vioscreen_pinitol
0.0
vioscreen_potass
3964.925342
vioscreen_procdate
10/28/15
vioscreen_proline
2.867260408
vioscreen_protanim
21.47054795
vioscreen_protein
51.58326199
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.10561858
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
423.0
vioscreen_retinol
93.63561644
vioscreen_rgrain
1.547424651
vioscreen_ribofla
2.7007670360000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.9236699999999995
vioscreen_satoco
0.0
vioscreen_selenium
77.25148224
vioscreen_serine
2.124246676
vioscreen_sfa100
0.175616455
vioscreen_sfa120
0.20890413
vioscreen_sfa140
0.807616435
vioscreen_sfa160
6.013999625
vioscreen_sfa170
0.033780827
vioscreen_sfa180
1.885890344
vioscreen_sfa200
0.140082205
vioscreen_sfa220
0.193589051
vioscreen_sfa40
0.215260273
vioscreen_sfa60
0.135945213
vioscreen_sfa80
0.110958915
vioscreen_sfatot
10.09665695
vioscreen_sodium
3086.3065070000002
vioscreen_sorbitol
1.055451944
vioscreen_srvid
18778.0
vioscreen_starch
44.51804634
vioscreen_started
5/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.66896137
vioscreen_sweet_servings
0.16437000000000002
vioscreen_tagatose
2.92958884
vioscreen_tfa161t
0.012
vioscreen_tfa181t
0.619369883
vioscreen_tfa182t
0.137041097
vioscreen_tgrain
3.4583837219999998
vioscreen_thiamin
1.318904176
vioscreen_threonin
1.721671327
vioscreen_time
37.0
vioscreen_totaltfa
0.939945085
vioscreen_totcla
0.041534249
vioscreen_totfolat
364.97966610000003
vioscreen_totsugar
84.93157641
vioscreen_tryptoph
0.509726036
vioscreen_tyrosine
1.5662187969999999
vioscreen_user_id
18778.0
vioscreen_v_drkgr
0.8393972740000001
vioscreen_v_orange
0.37917810700000004
vioscreen_v_other
1.2749589479999999
vioscreen_v_potato
0.07547945
vioscreen_v_starcy
0.02320548
vioscreen_v_tomato
0.8866301240000001
vioscreen_v_total
3.478849061
vioscreen_valine
2.355150531
vioscreen_veg5_day
6.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.0
vioscreen_visit
1.0
vioscreen_vita_iu
23301.9863
vioscreen_vita_rae
1243.0953769999999
vioscreen_vita_re
2392.553596
vioscreen_vitb12
2.0700272230000003
vioscreen_vitb6
1.6105478780000002
vioscreen_vitc
185.15115580000003
vioscreen_vitd
4.175178256000001
vioscreen_vitd2
0.0007123289999999999
vioscreen_vitd3
4.174493325
vioscreen_vitd_iu
167.00713019999998
vioscreen_vite_iu
15.14849502
vioscreen_vitk
498.44293660000005
vioscreen_water
4951.160274
vioscreen_weight
Not provided
vioscreen_wgrain
1.9109863280000001
vioscreen_whole_grain_servings
2.3887099999999997
vioscreen_xylitol
0.041698628
vioscreen_zinc
7.550382598
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily