American Gut Project; 10317.000017214
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632393
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:42Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000017214
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
31.0
age_corrected
31.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
17214
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1984.0
bmi
19.74
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-02-23
collection month
February
collection season
Winter
collection time
14:50
collection_timestamp
2015-02-23 14:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
326.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
a7fe2c444e6f1ef83c0ebc73d985a13809dd1ae59d836b508112f792dc7466e696fa91561ecba4475699aeb2c71a608b33ef93f6d521915f500cd188595363a8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-78.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000017214
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
509f1fcf10fb6475
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.001232877
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.35350693
vioscreen_addsugar
30.37413849
vioscreen_adsugtot
26.92035798
vioscreen_age
215.0
vioscreen_alanine
3.392575115
vioscreen_alcohol
0.016876713
vioscreen_alcohol_servings
0.00123
vioscreen_alphacar
2613.6410960000003
vioscreen_alphtoce
10.80863121
vioscreen_alphtoco
9.601647448
vioscreen_arginine
3.8891501230000003
vioscreen_ash
22.29298614
vioscreen_aspartam
0.0
vioscreen_aspartic
6.406686777999999
vioscreen_avcarb
176.8554259
vioscreen_bcodeid
Not provided
vioscreen_betacar
13429.59589
vioscreen_betacryp
161.6608947
vioscreen_betaine
160.8654859
vioscreen_betatoco
0.32843837
vioscreen_biochana
0.030739727
vioscreen_bmi
Not provided
vioscreen_caffeine
123.6332834
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.6299700000000001
vioscreen_calcium_servings
3.55611
vioscreen_calories
1910.5948629999998
vioscreen_carbo
199.96541100000002
vioscreen_cholest
310.38925510000007
vioscreen_choline
341.7172517
vioscreen_clac9t11
0.154410981
vioscreen_clat10c12
0.029917813999999997
vioscreen_copper
1.4400549480000002
vioscreen_coumest
0.194328768
vioscreen_cystine
0.969616448
vioscreen_d_cheese
0.92843837
vioscreen_d_milk
0.48315070200000004
vioscreen_d_tot_soym
1.629972442
vioscreen_d_total
1.629972442
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.34320549100000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.33994542
vioscreen_discfat_oil
27.22882063
vioscreen_discfat_sol
47.61307791
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.740027441
vioscreen_f_nj_citmlb
0.41238357299999995
vioscreen_f_nj_other
0.621780855
vioscreen_f_nj_total
1.034191811
vioscreen_f_other
0.655013745
vioscreen_f_total
1.395068694
vioscreen_fat
94.60012843
vioscreen_fiber
23.10553831
vioscreen_fibh2o
6.652547089
vioscreen_fibinso
16.47523009
vioscreen_finished
2/20/15
vioscreen_fish_servings
1.18115
vioscreen_fol_deqv
494.16481160000006
vioscreen_fol_nat
324.0125856
vioscreen_fol_syn
100.0672624
vioscreen_formontn
0.00279452
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.06575
vioscreen_frt5_day
1.5
vioscreen_frtsumm
2.8
vioscreen_fructose
16.56907106
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
4.086684972
vioscreen_g_total
5.679506902999999
vioscreen_g_whl
1.592849355
vioscreen_galactos
0.448383572
vioscreen_gammtoco
10.52419266
vioscreen_gender
false
vioscreen_genistn
0.429753385
vioscreen_glac
86.50231164
vioscreen_gltc
95.32475385
vioscreen_glucose
17.07997244
vioscreen_glutamic
14.26331202
vioscreen_glycine
2.9526577880000002
vioscreen_glycitn
0.075013702
vioscreen_grams
4431.52363
vioscreen_hei2010_dairy
6.6
vioscreen_hei2010_empty_calories
14.2
vioscreen_hei2010_fatty_acids
3.3
vioscreen_hei2010_fruit
4.6
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
8.6
vioscreen_hei2010_score
66.2
vioscreen_hei2010_sea_foods_plant_protiens
3.5
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.6
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.6
vioscreen_hei_milk
6.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
68.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
14.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.8
vioscreen_height
Not provided
vioscreen_histidin
1.970191935
vioscreen_inositol
0.170328762
vioscreen_iron
12.15703794
vioscreen_isoleuc
3.383643916
vioscreen_isomalt
0.0
vioscreen_joules
7993.9253420000005
vioscreen_juice_servings
0.72173
vioscreen_lactitol
0.0
vioscreen_lactose
10.77167166
vioscreen_legumes
0.01030137
vioscreen_leucine
5.641287859
vioscreen_line_gi
429.7270976
vioscreen_low_fat_dairy_serving
0.23581
vioscreen_lutzeax
7116.320548000001
vioscreen_lycopene
5519.026027
vioscreen_lysine
4.929287845
vioscreen_m_egg
0.6651232579999999
vioscreen_m_fish_hi
0.610931522
vioscreen_m_fish_lo
0.06210958900000001
vioscreen_m_frank
0.7286575940000001
vioscreen_m_meat
0.592575324
vioscreen_m_mpf
3.500712356
vioscreen_m_nutsd
0.34613697600000004
vioscreen_m_organ
0.0
vioscreen_m_poult
1.506438289
vioscreen_m_soy
0.00969863
vioscreen_magnes
306.4166524
vioscreen_maltitol
0.0
vioscreen_maltose
3.40728743
vioscreen_mangan
4.7187125430000005
vioscreen_mannitol
0.460712255
vioscreen_methhis3
12.62920591
vioscreen_methion
1.6728217969999999
vioscreen_mfa141
0.10835616199999999
vioscreen_mfa161
1.7430958369999998
vioscreen_mfa181
33.68066674
vioscreen_mfa201
0.428301375
vioscreen_mfa221
0.126575345
vioscreen_mfatot
36.32678457
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.601647448
vioscreen_nccglbr
140.9734696
vioscreen_nccglgr
98.60983519
vioscreen_niacin
18.24205774
vioscreen_niacineq
32.4518354
vioscreen_nitrogen
11.94468509
vioscreen_non_fried_fish_servings
1.18115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.219424898
vioscreen_oxalic
347.8676798
vioscreen_oxalicm
311.2815711
vioscreen_pantothe
5.3243016910000005
vioscreen_pectins
4.327232382
vioscreen_pfa182
14.69235606
vioscreen_pfa183
1.85350693
vioscreen_pfa184
0.028191777999999997
vioscreen_pfa204
0.16109588800000002
vioscreen_pfa205
0.093260256
vioscreen_pfa225
0.046849315999999995
vioscreen_pfa226
0.19819177100000002
vioscreen_pfatot
17.20172838
vioscreen_phenylal
3.265095917
vioscreen_phosphor
1221.625599
vioscreen_phytic
680.9880565000001
vioscreen_pinitol
0.009041095
vioscreen_potass
2867.598801
vioscreen_procdate
10/28/15
vioscreen_proline
4.889561818
vioscreen_protanim
47.82832834
vioscreen_protein
73.87262414
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.04120826
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
554.0
vioscreen_retinol
389.9232021
vioscreen_rgrain
3.9752876180000003
vioscreen_ribofla
1.6860547209999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.6216700000000002
vioscreen_satoco
0.0
vioscreen_selenium
105.44489509999998
vioscreen_serine
3.4626571860000004
vioscreen_sfa100
0.771205536
vioscreen_sfa120
0.991972706
vioscreen_sfa140
3.2486575610000004
vioscreen_sfa160
17.81617081
vioscreen_sfa170
0.14917808400000002
vioscreen_sfa180
7.3770400789999995
vioscreen_sfa200
0.17221914800000002
vioscreen_sfa220
0.12279450900000001
vioscreen_sfa40
0.882657571
vioscreen_sfa60
0.522164415
vioscreen_sfa80
0.382547959
vioscreen_sfatot
32.88276702
vioscreen_sodium
4307.60274
vioscreen_sorbitol
0.415561666
vioscreen_srvid
17186.0
vioscreen_starch
84.04150792
vioscreen_started
2/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.0512896
vioscreen_sweet_servings
0.52769
vioscreen_tagatose
2.6357533909999997
vioscreen_tfa161t
0.08547945900000001
vioscreen_tfa181t
1.9167396859999999
vioscreen_tfa182t
0.43632879399999996
vioscreen_tgrain
5.783369676
vioscreen_thiamin
1.409013638
vioscreen_threonin
2.859260622
vioscreen_time
33.0
vioscreen_totaltfa
2.522766949
vioscreen_totcla
0.184739727
vioscreen_totfolat
424.07966610000005
vioscreen_totsugar
74.80506742
vioscreen_tryptoph
0.8545480390000001
vioscreen_tyrosine
2.583424691
vioscreen_user_id
17186.0
vioscreen_v_drkgr
0.563424641
vioscreen_v_orange
0.705369923
vioscreen_v_other
1.089753368
vioscreen_v_potato
0.157808236
vioscreen_v_starcy
0.064767122
vioscreen_v_tomato
0.29547944800000003
vioscreen_v_total
2.876767177
vioscreen_valine
3.854904217
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
25995.6411
vioscreen_vita_rae
1624.6962330000001
vioscreen_vita_re
2859.464726
vioscreen_vitb12
3.499396672
vioscreen_vitb6
1.6136166930000002
vioscreen_vitc
127.1127354
vioscreen_vitd
7.055068761
vioscreen_vitd2
0.004246575
vioscreen_vitd3
7.050849476000001
vioscreen_vitd_iu
282.20275039999996
vioscreen_vite_iu
14.3201105
vioscreen_vitk
342.88122860000004
vioscreen_water
4069.965753
vioscreen_weight
Not provided
vioscreen_wgrain
1.808082225
vioscreen_whole_grain_servings
1.59285
vioscreen_xylitol
0.02791781
vioscreen_zinc
9.522026167
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)