American Gut Project; 10317.000030027
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634094
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:18Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030027
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030027
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
30.82
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
10:20
collection_timestamp
2015-07-27 10:20
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
93.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
168.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
c78d1c1a59db7692370274a6dc85e63e63fa31d0ee1708f6cffa2e36d01093cca4ceedfadaf30f35079c8644ee9c6dfed54f37c6fa33064ff09f7698a24edc75
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
53.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.8
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030027
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
e07693c10a3189ba
teethbrushing_frequency
Daily
thyroid
Self-diagnosed
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.013123227
vioscreen_a_cal
253.146083
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.7830145
vioscreen_addsugar
53.99497003
vioscreen_adsugtot
50.76312072
vioscreen_age
215.0
vioscreen_alanine
2.8332606489999996
vioscreen_alcohol
30.79293129
vioscreen_alcohol_servings
2.0131200000000002
vioscreen_alphacar
1343.1944349999999
vioscreen_alphtoce
8.941890518
vioscreen_alphtoco
8.363095302
vioscreen_arginine
3.33312286
vioscreen_ash
16.90619114
vioscreen_aspartam
0.0
vioscreen_aspartic
6.135233171
vioscreen_avcarb
152.1298908
vioscreen_bcodeid
Not provided
vioscreen_betacar
6731.236301000001
vioscreen_betacryp
84.55184075
vioscreen_betaine
65.97997646
vioscreen_betatoco
0.18273973899999998
vioscreen_biochana
0.008383561
vioscreen_bmi
Not provided
vioscreen_caffeine
350.167851
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.98433
vioscreen_calcium_servings
3.20288
vioscreen_calories
1532.956507
vioscreen_carbo
171.70489080000002
vioscreen_cholest
161.98471750000002
vioscreen_choline
295.6249358
vioscreen_clac9t11
0.040630137000000004
vioscreen_clat10c12
0.006876711999999999
vioscreen_copper
1.129150725
vioscreen_coumest
0.025890412999999998
vioscreen_cystine
0.6156986179999999
vioscreen_d_cheese
0.425041094
vioscreen_d_milk
1.057863
vioscreen_d_tot_soym
1.98432868
vioscreen_d_total
1.98432868
vioscreen_d_yogurt
0.49843833600000004
vioscreen_daidzein
0.075753424
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.13120552
vioscreen_discfat_oil
18.54816326
vioscreen_discfat_sol
21.00326145
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000520548
vioscreen_f_citmlb
0.7396986870000001
vioscreen_f_nj_citmlb
0.734849402
vioscreen_f_nj_other
1.4975890280000002
vioscreen_f_nj_total
2.232438263
vioscreen_f_other
1.4975890280000002
vioscreen_f_total
2.2373148880000002
vioscreen_fat
48.31254281
vioscreen_fiber
19.55230362
vioscreen_fibh2o
4.141478823
vioscreen_fibinso
15.52725947
vioscreen_finished
7/26/15
vioscreen_fish_servings
4.80269
vioscreen_fol_deqv
337.86988439999993
vioscreen_fol_nat
314.8750428
vioscreen_fol_syn
13.50641053
vioscreen_formontn
0.000739726
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.5
vioscreen_fructose
18.55731619
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.7481917709999999
vioscreen_g_total
1.043561627
vioscreen_g_whl
0.29536985600000004
vioscreen_galactos
0.848520525
vioscreen_gammtoco
4.9407122889999995
vioscreen_gender
false
vioscreen_genistn
0.064465755
vioscreen_glac
56.37135060000001
vioscreen_gltc
62.58682042
vioscreen_glucose
16.98797357
vioscreen_glutamic
11.44021832
vioscreen_glycine
2.2280546009999997
vioscreen_glycitn
0.013808218999999998
vioscreen_grams
3495.193151
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
11.2
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.5
vioscreen_hei_score
67.6
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
5.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
1.609397407
vioscreen_inositol
0.278191783
vioscreen_iron
7.2978355089999996
vioscreen_isoleuc
2.840684865
vioscreen_isomalt
0.0
vioscreen_joules
6413.892465999999
vioscreen_juice_servings
0.00975
vioscreen_lactitol
0.0
vioscreen_lactose
22.14388913
vioscreen_legumes
0.062630139
vioscreen_leucine
5.032274053
vioscreen_line_gi
324.8937714
vioscreen_low_fat_dairy_serving
1.31236
vioscreen_lutzeax
7182.187671
vioscreen_lycopene
2363.838699
vioscreen_lysine
4.78309577
vioscreen_m_egg
0.150301372
vioscreen_m_fish_hi
0.6517534229999999
vioscreen_m_fish_lo
2.085096051
vioscreen_m_frank
0.17021918100000002
vioscreen_m_meat
0.118876711
vioscreen_m_mpf
3.025945125
vioscreen_m_nutsd
0.682054828
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0034246579999999997
vioscreen_magnes
329.55543660000006
vioscreen_maltitol
0.0
vioscreen_maltose
1.568493151
vioscreen_mangan
5.21123281
vioscreen_mannitol
0.573999943
vioscreen_methhis3
8.407863335
vioscreen_methion
1.47923283
vioscreen_mfa141
0.046520547
vioscreen_mfa161
0.705150782
vioscreen_mfa181
19.30424872
vioscreen_mfa201
0.22624658
vioscreen_mfa221
0.053890411
vioscreen_mfatot
20.5504642
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.363095302
vioscreen_nccglbr
104.9782855
vioscreen_nccglgr
73.43814212
vioscreen_niacin
12.54583556
vioscreen_niacineq
23.74057684
vioscreen_nitrogen
9.800575235
vioscreen_non_fried_fish_servings
4.80269
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.159260204
vioscreen_oxalic
202.55025680000003
vioscreen_oxalicm
209.60387409999998
vioscreen_pantothe
4.296465981
vioscreen_pectins
4.404766428
vioscreen_pfa182
6.64575396
vioscreen_pfa183
0.8257259840000001
vioscreen_pfa184
0.015534247
vioscreen_pfa204
0.059999999000000005
vioscreen_pfa205
0.102520543
vioscreen_pfa225
0.026547947000000002
vioscreen_pfa226
0.18936987100000002
vioscreen_pfatot
7.947698389
vioscreen_phenylal
2.746054788
vioscreen_phosphor
1238.180394
vioscreen_phytic
332.7212757
vioscreen_pinitol
0.001342466
vioscreen_potass
3413.97774
vioscreen_procdate
10/28/15
vioscreen_proline
4.175506675
vioscreen_protanim
45.66685039
vioscreen_protein
61.13476563
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.45975359
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
261.0
vioscreen_retinol
270.3525043
vioscreen_rgrain
0.633780827
vioscreen_ribofla
1.7023287
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.64537
vioscreen_satoco
0.0
vioscreen_selenium
80.40055651
vioscreen_serine
3.016301571
vioscreen_sfa100
0.364712315
vioscreen_sfa120
1.189917745
vioscreen_sfa140
1.5316438019999998
vioscreen_sfa160
7.8809035210000005
vioscreen_sfa170
0.052904108
vioscreen_sfa180
3.526356485
vioscreen_sfa200
0.124986309
vioscreen_sfa220
0.12882193
vioscreen_sfa40
0.349013697
vioscreen_sfa60
0.154849295
vioscreen_sfa80
0.232383582
vioscreen_sfatot
15.82679527
vioscreen_sodium
2742.984418
vioscreen_sorbitol
1.752711968
vioscreen_srvid
20234.0
vioscreen_starch
18.98476696
vioscreen_started
7/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.9484375
vioscreen_sweet_servings
0.8547899999999999
vioscreen_tagatose
5.157972362
vioscreen_tfa161t
0.030958902000000003
vioscreen_tfa181t
0.724575262
vioscreen_tfa182t
0.254958897
vioscreen_tgrain
0.849479445
vioscreen_thiamin
0.7368493490000001
vioscreen_threonin
2.467945172
vioscreen_time
18.0
vioscreen_totaltfa
1.0383288240000002
vioscreen_totcla
0.048027394
vioscreen_totfolat
328.3813142
vioscreen_totsugar
110.70434499999999
vioscreen_tryptoph
0.6721643740000001
vioscreen_tyrosine
2.404493191
vioscreen_user_id
20234.0
vioscreen_v_drkgr
0.623835566
vioscreen_v_orange
0.218876711
vioscreen_v_other
0.820356144
vioscreen_v_potato
0.197835614
vioscreen_v_starcy
0.145397259
vioscreen_v_tomato
0.286328773
vioscreen_v_total
2.292684978
vioscreen_valine
3.435699045
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.5
vioscreen_visit
1.0
vioscreen_vita_iu
13310.49863
vioscreen_vita_rae
890.7785103
vioscreen_vita_re
1511.204281
vioscreen_vitb12
4.421150605
vioscreen_vitb6
1.440630184
vioscreen_vitc
126.910381
vioscreen_vitd
7.751506983
vioscreen_vitd2
0.0
vioscreen_vitd3
7.751506983
vioscreen_vitd_iu
310.0602793
vioscreen_vite_iu
12.46797276
vioscreen_vitk
345.5583048
vioscreen_water
3179.456507
vioscreen_weight
Not provided
vioscreen_wgrain
0.215698639
vioscreen_whole_grain_servings
0.29536999999999997
vioscreen_xylitol
0.072958907
vioscreen_zinc
7.697013458
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
87.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)