American Gut Project; 10317.000029477
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634045
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029477
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29477
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
29.42
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/10/2015
collection month
August
collection season
Summer
collection time
06:00
collection_timestamp
2015-08-10 06:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Germany
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
143.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
90b9187ca49dab22c0e8f11c9337aa9c96902c75dd278f07ec88a772ae09f66c71c965732ae46777515c3f9f539d7bef26a29ed1e61c1ac3219f034bea0c878b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.3
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029477
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
5e0513c2d413dadb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.223315095
vioscreen_a_cal
551.8061216
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.499370251
vioscreen_addsugar
25.65408283
vioscreen_adsugtot
22.81999947
vioscreen_age
215.0
vioscreen_alanine
3.654191192
vioscreen_alcohol
63.10339789999999
vioscreen_alcohol_servings
4.223319999999999
vioscreen_alphacar
887.9271403999999
vioscreen_alphtoce
8.105616572
vioscreen_alphtoco
7.06706844
vioscreen_arginine
3.854602887
vioscreen_ash
17.34340085
vioscreen_aspartam
0.0
vioscreen_aspartic
6.398274294
vioscreen_avcarb
141.92022690000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
3466.675
vioscreen_betacryp
49.263811
vioscreen_betaine
128.0799122
vioscreen_betatoco
0.255068489
vioscreen_biochana
0.00830137
vioscreen_bmi
Not provided
vioscreen_caffeine
188.3662243
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.8235299999999999
vioscreen_calcium_servings
1.9580000000000002
vioscreen_calories
1954.537329
vioscreen_carbo
154.2182149
vioscreen_cholest
373.6108733
vioscreen_choline
449.2468322
vioscreen_clac9t11
0.10046576900000001
vioscreen_clat10c12
0.023123292
vioscreen_copper
1.152794574
vioscreen_coumest
0.133123288
vioscreen_cystine
0.900027424
vioscreen_d_cheese
0.409205439
vioscreen_d_milk
0.200630125
vioscreen_d_tot_soym
0.82353432
vioscreen_d_total
0.82353432
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
0.217671225
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.245068694
vioscreen_discfat_oil
19.90024615
vioscreen_discfat_sol
36.72825075
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.028657534
vioscreen_f_nj_citmlb
0.024602738
vioscreen_f_nj_other
0.23810957800000002
vioscreen_f_nj_total
0.262739709
vioscreen_f_other
0.23810957800000002
vioscreen_f_total
0.266794492
vioscreen_fat
69.5143033
vioscreen_fiber
12.28684718
vioscreen_fibh2o
5.017204891
vioscreen_fibinso
7.185643862
vioscreen_finished
8/9/15
vioscreen_fish_servings
2.4784599999999997
vioscreen_fol_deqv
344.1591182
vioscreen_fol_nat
208.36684499999998
vioscreen_fol_syn
79.83967252
vioscreen_formontn
0.000219178
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.26666
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.5
vioscreen_fructose
7.171781357
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
3.606383441
vioscreen_g_total
3.9548493689999997
vioscreen_g_whl
0.34843835700000003
vioscreen_galactos
0.43419181100000004
vioscreen_gammtoco
9.148301717999999
vioscreen_gender
false
vioscreen_genistn
0.18994521
vioscreen_glac
68.42177868
vioscreen_gltc
73.13681507
vioscreen_glucose
7.750904993
vioscreen_glutamic
12.37758856
vioscreen_glycine
3.302000281
vioscreen_glycitn
0.018000002
vioscreen_grams
2746.3277399999997
vioscreen_hei2010_dairy
3.2
vioscreen_hei2010_empty_calories
6.0
vioscreen_hei2010_fatty_acids
4.6
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
3.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.8
vioscreen_hei2010_score
48.9
vioscreen_hei2010_sea_foods_plant_protiens
4.6
vioscreen_hei2010_sodium
4.5
vioscreen_hei2010_veg
4.2
vioscreen_hei2010_whole_fruit
1.7
vioscreen_hei2010_whole_grains
1.2
vioscreen_hei_drk_g_org_veg_leg
2.6
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
3.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.2
vioscreen_hei_non_juice_frt
1.7
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
7.4
vioscreen_hei_score
46.2
vioscreen_hei_sodium
3.6
vioscreen_hei_sol_fat_alc_add_sug
0.1
vioscreen_hei_veg
4.2
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
1.924520581
vioscreen_inositol
0.22153424800000002
vioscreen_iron
10.90117723
vioscreen_isoleuc
3.149040828
vioscreen_isomalt
0.0
vioscreen_joules
8177.781507
vioscreen_juice_servings
0.00811
vioscreen_lactitol
0.0
vioscreen_lactose
5.781752997000001
vioscreen_legumes
0.083643832
vioscreen_leucine
5.394904819
vioscreen_line_gi
318.3133776
vioscreen_low_fat_dairy_serving
0.21361999999999998
vioscreen_lutzeax
2941.52911
vioscreen_lycopene
5355.2445210000005
vioscreen_lysine
4.989287912
vioscreen_m_egg
1.045342432
vioscreen_m_fish_hi
0.665205488
vioscreen_m_fish_lo
0.747287698
vioscreen_m_frank
0.62336986
vioscreen_m_meat
2.043150518
vioscreen_m_mpf
4.9150404000000005
vioscreen_m_nutsd
0.018082192
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.678191762
vioscreen_m_soy
0.002465754
vioscreen_magnes
252.9456122
vioscreen_maltitol
0.0
vioscreen_maltose
1.757178069
vioscreen_mangan
2.237944971
vioscreen_mannitol
0.291369859
vioscreen_methhis3
17.62731298
vioscreen_methion
1.6823561580000002
vioscreen_mfa141
0.10673972400000001
vioscreen_mfa161
1.290712205
vioscreen_mfa181
23.89353328
vioscreen_mfa201
0.316684963
vioscreen_mfa221
0.103424658
vioscreen_mfatot
25.95161066
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.06706844
vioscreen_nccglbr
108.4035531
vioscreen_nccglgr
75.83731271
vioscreen_niacin
20.62651835
vioscreen_niacineq
32.55435841
vioscreen_nitrogen
11.4736997
vioscreen_non_fried_fish_servings
2.05096
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5404928969999998
vioscreen_oxalic
187.9187072
vioscreen_oxalicm
168.51664169999998
vioscreen_pantothe
5.274602017
vioscreen_pectins
1.538273725
vioscreen_pfa182
12.60331496
vioscreen_pfa183
1.170301045
vioscreen_pfa184
0.024438356
vioscreen_pfa204
0.192931502
vioscreen_pfa205
0.09235616199999999
vioscreen_pfa225
0.041534246000000004
vioscreen_pfa226
0.212821898
vioscreen_pfatot
14.47159006
vioscreen_phenylal
2.993204864
vioscreen_phosphor
1083.986901
vioscreen_phytic
330.46892119999995
vioscreen_pinitol
0.006465754000000001
vioscreen_potass
2514.289041
vioscreen_procdate
10/28/15
vioscreen_proline
4.200520387
vioscreen_protanim
53.93402718
vioscreen_protein
71.36182577
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.42470971
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
219.0
vioscreen_retinol
521.3592466
vioscreen_rgrain
3.290246415
vioscreen_ribofla
1.8669314869999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.50093
vioscreen_satoco
0.0
vioscreen_selenium
105.50529750000001
vioscreen_serine
3.1293146000000003
vioscreen_sfa100
0.344219156
vioscreen_sfa120
0.6777260140000001
vioscreen_sfa140
1.7478631009999999
vioscreen_sfa160
12.54317878
vioscreen_sfa170
0.16216440099999999
vioscreen_sfa180
5.800521056
vioscreen_sfa200
0.113561646
vioscreen_sfa220
0.051917805
vioscreen_sfa40
0.38419185299999997
vioscreen_sfa60
0.20791780699999998
vioscreen_sfa80
0.187013725
vioscreen_sfatot
22.48408337
vioscreen_sodium
3120.735616
vioscreen_sorbitol
0.28783563100000004
vioscreen_srvid
20355.0
vioscreen_starch
63.69605094
vioscreen_started
8/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.14876793
vioscreen_sweet_servings
0.3682
vioscreen_tagatose
1.967232984
vioscreen_tfa161t
0.057397268
vioscreen_tfa181t
1.705369589
vioscreen_tfa182t
0.31643835600000003
vioscreen_tgrain
3.951369863
vioscreen_thiamin
1.151342439
vioscreen_threonin
2.7528494219999997
vioscreen_time
31.0
vioscreen_totaltfa
2.11158882
vioscreen_totcla
0.123890425
vioscreen_totfolat
288.2065283
vioscreen_totsugar
42.02731164
vioscreen_tryptoph
0.715945142
vioscreen_tyrosine
2.364986388
vioscreen_user_id
20355.0
vioscreen_v_drkgr
0.16969863699999999
vioscreen_v_orange
0.152904103
vioscreen_v_other
0.51090414
vioscreen_v_potato
0.515452053
vioscreen_v_starcy
0.03761644
vioscreen_v_tomato
0.317506827
vioscreen_v_total
1.7040819980000002
vioscreen_valine
3.584466636
vioscreen_veg5_day
1.7
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.4
vioscreen_visit
1.0
vioscreen_vita_iu
8296.508904
vioscreen_vita_rae
849.2991437999999
vioscreen_vita_re
1177.238099
vioscreen_vitb12
6.620028896
vioscreen_vitb6
1.771287725
vioscreen_vitc
43.5256234
vioscreen_vitd
5.888766187000001
vioscreen_vitd2
0.0016712329999999998
vioscreen_vitd3
5.8871501770000005
vioscreen_vitd_iu
235.5506475
vioscreen_vite_iu
10.52405421
vioscreen_vitk
117.26877140000002
vioscreen_water
2405.143493
vioscreen_weight
Not provided
vioscreen_wgrain
0.661205469
vioscreen_whole_grain_servings
0.34844
vioscreen_xylitol
0.040191781
vioscreen_zinc
9.722986007000001
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
93.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily