American Gut Project; 10317.000030020
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633757
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:30:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030020
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
53.0
age_corrected
53.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030020
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1962.0
bmi
20.66
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/01/2015
collection month
July
collection season
Summer
collection time
07:45
collection_timestamp
2015-07-01 07:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
Switzerland
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
60.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
176.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fa1c496eda941f87035404deeaeefe31d43bf0c7667e843d4ea14e1d69692368550812adc64d38599127c510ef1ab92a4f5b8cc71e4a70dccc6bd2abbb49cd01
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.8
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-1.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Regularly (3-5 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030020
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
b39a2741507aa742
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.022438363
vioscreen_a_cal
125.45627140000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.796054955
vioscreen_addsugar
31.86501498
vioscreen_adsugtot
29.55931614
vioscreen_age
215.0
vioscreen_alanine
3.101507318
vioscreen_alcohol
15.70221934
vioscreen_alcohol_servings
1.02244
vioscreen_alphacar
2534.717466
vioscreen_alphtoce
13.29397207
vioscreen_alphtoco
11.94375268
vioscreen_arginine
4.007781063
vioscreen_ash
19.50972817
vioscreen_aspartam
0.0
vioscreen_aspartic
6.838602312000001
vioscreen_avcarb
137.3738335
vioscreen_bcodeid
Not provided
vioscreen_betacar
14077.85205
vioscreen_betacryp
291.1797517
vioscreen_betaine
56.05432363
vioscreen_betatoco
0.34964380100000003
vioscreen_biochana
0.012383563
vioscreen_bmi
Not provided
vioscreen_caffeine
420.2235017
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.11537
vioscreen_calcium_servings
3.6159199999999996
vioscreen_calories
1668.371404
vioscreen_carbo
165.23167809999998
vioscreen_cholest
332.2291096
vioscreen_choline
438.5827483
vioscreen_clac9t11
0.073698629
vioscreen_clat10c12
0.01339726
vioscreen_copper
1.414520515
vioscreen_coumest
0.216767152
vioscreen_cystine
0.859972643
vioscreen_d_cheese
0.465479435
vioscreen_d_milk
1.64539728
vioscreen_d_tot_soym
2.115369823
vioscreen_d_total
2.115369823
vioscreen_d_yogurt
0.0
vioscreen_daidzein
3.610904725
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.8435342869999998
vioscreen_discfat_oil
28.90974957
vioscreen_discfat_sol
28.169012199999997
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000657534
vioscreen_f_citmlb
0.817835643
vioscreen_f_nj_citmlb
0.814246609
vioscreen_f_nj_other
0.607315022
vioscreen_f_nj_total
1.42156163
vioscreen_f_other
0.607315022
vioscreen_f_total
1.4251779219999998
vioscreen_fat
76.65244007
vioscreen_fiber
27.84704088
vioscreen_fibh2o
8.295643595
vioscreen_fibinso
19.60917701
vioscreen_finished
6/30/15
vioscreen_fish_servings
2.06288
vioscreen_fol_deqv
384.9434932
vioscreen_fol_nat
369.6583048
vioscreen_fol_syn
8.980575771
vioscreen_formontn
0.0029315070000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.9
vioscreen_fructose
14.86764501
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.43315070200000005
vioscreen_g_total
1.869178249
vioscreen_g_whl
1.4360272969999999
vioscreen_galactos
0.16638355
vioscreen_gammtoco
11.83917755
vioscreen_gender
false
vioscreen_genistn
3.882219539
vioscreen_glac
52.79561751
vioscreen_gltc
60.25271297
vioscreen_glucose
14.24342493
vioscreen_glutamic
12.54295939
vioscreen_glycine
2.632027237
vioscreen_glycitn
0.7550959340000001
vioscreen_grams
3770.5472600000003
vioscreen_hei2010_dairy
9.8
vioscreen_hei2010_empty_calories
18.0
vioscreen_hei2010_fatty_acids
5.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
9.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.7
vioscreen_hei_score
74.0
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
13.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.77506856
vioscreen_inositol
0.218630145
vioscreen_iron
10.32353449
vioscreen_isoleuc
3.0876167189999997
vioscreen_isomalt
0.0
vioscreen_joules
6980.462329000001
vioscreen_juice_servings
0.007259999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
20.56197292
vioscreen_legumes
0.115506859
vioscreen_leucine
5.2867939989999995
vioscreen_line_gi
326.3202483
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
10850.65205
vioscreen_lycopene
2026.3126710000001
vioscreen_lysine
4.685918103000001
vioscreen_m_egg
1.031753331
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.7675616540000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.486958877
vioscreen_m_mpf
2.26049303
vioscreen_m_nutsd
1.762054861
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5980000120000001
vioscreen_m_soy
0.294712349
vioscreen_magnes
426.01023119999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.310739763
vioscreen_mangan
5.293726255
vioscreen_mannitol
0.438438311
vioscreen_methhis3
7.471479692999999
vioscreen_methion
1.498931634
vioscreen_mfa141
0.116082189
vioscreen_mfa161
0.92197274
vioscreen_mfa181
26.42643943
vioscreen_mfa201
0.33131506899999996
vioscreen_mfa221
0.078136988
vioscreen_mfatot
28.08559236
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
11.94375268
vioscreen_nccglbr
100.7512949
vioscreen_nccglgr
70.47254923
vioscreen_niacin
17.19169788
vioscreen_niacineq
30.48419307
vioscreen_nitrogen
11.02895909
vioscreen_non_fried_fish_servings
2.06288
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9509314130000002
vioscreen_oxalic
385.2895548
vioscreen_oxalicm
412.5014127
vioscreen_pantothe
6.527369167000001
vioscreen_pectins
5.09958864
vioscreen_pfa182
15.40008294
vioscreen_pfa183
1.67342429
vioscreen_pfa184
0.016931506000000002
vioscreen_pfa204
0.135863025
vioscreen_pfa205
0.07857534299999999
vioscreen_pfa225
0.027753422000000003
vioscreen_pfa226
0.154438353
vioscreen_pfatot
17.55641321
vioscreen_phenylal
3.119752983
vioscreen_phosphor
1355.356164
vioscreen_phytic
760.8410959
vioscreen_pinitol
0.021452056
vioscreen_potass
3647.896233
vioscreen_procdate
10/28/15
vioscreen_proline
3.982876712
vioscreen_protanim
41.845202799999996
vioscreen_protein
67.71259632
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.86958744
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
342.0
vioscreen_retinol
415.9152397
vioscreen_rgrain
0.401068491
vioscreen_ribofla
2.299616231
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.4643
vioscreen_satoco
0.0
vioscreen_selenium
89.31695206
vioscreen_serine
3.501863161
vioscreen_sfa100
0.548657519
vioscreen_sfa120
1.2007672040000001
vioscreen_sfa140
2.246958944
vioscreen_sfa160
12.9332058
vioscreen_sfa170
0.112109594
vioscreen_sfa180
5.412000012999999
vioscreen_sfa200
0.227287669
vioscreen_sfa220
0.330410976
vioscreen_sfa40
0.614219185
vioscreen_sfa60
0.335780815
vioscreen_sfa80
0.30306848
vioscreen_sfatot
24.71504174
vioscreen_sodium
2750.3128420000003
vioscreen_sorbitol
0.49098627799999994
vioscreen_srvid
20024.0
vioscreen_starch
39.631097499999996
vioscreen_started
6/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.98602312
vioscreen_sweet_servings
0.54586
vioscreen_tagatose
1.576136926
vioscreen_tfa161t
0.035506847
vioscreen_tfa181t
1.144876726
vioscreen_tfa182t
0.312191793
vioscreen_tgrain
1.825726068
vioscreen_thiamin
1.029890337
vioscreen_threonin
2.689534394
vioscreen_time
148.0
vioscreen_totaltfa
1.499150859
vioscreen_totcla
0.08747945300000001
vioscreen_totfolat
378.6386986
vioscreen_totsugar
82.82013592
vioscreen_tryptoph
0.7974246509999999
vioscreen_tyrosine
2.536136826
vioscreen_user_id
20024.0
vioscreen_v_drkgr
0.848904126
vioscreen_v_orange
0.585726051
vioscreen_v_other
1.424684958
vioscreen_v_potato
0.188739724
vioscreen_v_starcy
0.106547954
vioscreen_v_tomato
0.352931527
vioscreen_v_total
3.507507157
vioscreen_valine
3.584493391
vioscreen_veg5_day
7.3
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
7.0
vioscreen_visit
1.0
vioscreen_vita_iu
27204.61918
vioscreen_vita_rae
1706.816096
vioscreen_vita_re
2997.716438
vioscreen_vitb12
4.280219593
vioscreen_vitb6
1.802410972
vioscreen_vitc
205.0282106
vioscreen_vitd
8.759507438
vioscreen_vitd2
0.000684932
vioscreen_vitd3
8.758795082
vioscreen_vitd_iu
350.3802975
vioscreen_vite_iu
17.78265598
vioscreen_vitk
486.00269689999993
vioscreen_water
3445.022945
vioscreen_weight
Not provided
vioscreen_wgrain
1.424657534
vioscreen_whole_grain_servings
1.43603
vioscreen_xylitol
0.054547945
vioscreen_zinc
10.2787397
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)