American Gut Project; 10317.000022020
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632975
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022020
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
33.0
age_corrected
33.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22020
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
25.61
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
I do not have this condition
collection date
2015-03-25
collection month
March
collection season
Spring
collection time
19:00
collection_timestamp
2015-03-25 19:00
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Daily
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
51.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d46247426123d9c8431aa3db959abf20eff4f80132ad1177146ec0c87ae543064b368234e74b9522b59211b30fa91975b854b455af49071a6ff0129729053297
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-37.7
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
144.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022020
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
c28a4824acb4543f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.111589071
vioscreen_a_cal
132.0818707
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.865122672
vioscreen_addsugar
37.35394371
vioscreen_adsugtot
33.5366037
vioscreen_age
215.0
vioscreen_alanine
3.746685039
vioscreen_alcohol
16.31361569
vioscreen_alcohol_servings
1.1115899999999999
vioscreen_alphacar
1917.4226030000002
vioscreen_alphtoce
14.73142658
vioscreen_alphtoco
13.16747913
vioscreen_arginine
4.055616238
vioscreen_ash
25.77778253
vioscreen_aspartam
0.0
vioscreen_aspartic
7.240192236
vioscreen_avcarb
162.7141695
vioscreen_bcodeid
Not provided
vioscreen_betacar
15353.50274
vioscreen_betacryp
139.96270330000002
vioscreen_betaine
133.24965749999998
vioscreen_betatoco
0.372712352
vioscreen_biochana
0.007178083
vioscreen_bmi
Not provided
vioscreen_caffeine
203.12615580000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.366
vioscreen_calcium_servings
4.44545
vioscreen_calories
2081.6696920000004
vioscreen_carbo
187.3315711
vioscreen_cholest
553.3706336
vioscreen_choline
569.8479452
vioscreen_clac9t11
0.16427396
vioscreen_clat10c12
0.02871233
vioscreen_copper
1.4712328769999998
vioscreen_coumest
0.082986304
vioscreen_cystine
1.079314935
vioscreen_d_cheese
1.238575389
vioscreen_d_milk
0.8750684759999999
vioscreen_d_tot_soym
2.366000241
vioscreen_d_total
2.366000241
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
0.363479447
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.0734244569999998
vioscreen_discfat_oil
29.42747753
vioscreen_discfat_sol
55.21736408
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00060274
vioscreen_f_citmlb
0.55509585
vioscreen_f_nj_citmlb
0.546931478
vioscreen_f_nj_other
0.40063008299999997
vioscreen_f_nj_total
0.947561687
vioscreen_f_other
0.40063008299999997
vioscreen_f_total
0.955726185
vioscreen_fat
104.511601
vioscreen_fiber
24.60594499
vioscreen_fibh2o
6.894164705
vioscreen_fibinso
17.67991626
vioscreen_finished
3/17/15
vioscreen_fish_servings
2.3625
vioscreen_fol_deqv
531.4514983
vioscreen_fol_nat
415.2855736
vioscreen_fol_syn
68.23011558
vioscreen_formontn
0.001479452
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.27945
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.9
vioscreen_fructose
10.99443961
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.6258631880000003
vioscreen_g_total
4.896136558
vioscreen_g_whl
1.27030138
vioscreen_galactos
0.526301345
vioscreen_gammtoco
13.85021672
vioscreen_gender
false
vioscreen_genistn
0.399205456
vioscreen_glac
69.58988656
vioscreen_gltc
75.83003532
vioscreen_glucose
12.91668317
vioscreen_glutamic
15.30016454
vioscreen_glycine
2.956493137
vioscreen_glycitn
0.060602742
vioscreen_grams
4454.668151
vioscreen_hei2010_dairy
8.7
vioscreen_hei2010_empty_calories
12.8
vioscreen_hei2010_fatty_acids
3.5
vioscreen_hei2010_fruit
2.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.6
vioscreen_hei2010_sea_foods_plant_protiens
4.8
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.9
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
9.6
vioscreen_hei_milk
8.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
61.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
2.067232817
vioscreen_inositol
0.106082185
vioscreen_iron
12.79786093
vioscreen_isoleuc
3.798657561
vioscreen_isomalt
0.0
vioscreen_joules
8709.703425
vioscreen_juice_servings
0.01636
vioscreen_lactitol
0.0
vioscreen_lactose
15.89243766
vioscreen_legumes
0.042904109
vioscreen_leucine
6.385946864
vioscreen_line_gi
363.7464041
vioscreen_low_fat_dairy_serving
0.6856399999999999
vioscreen_lutzeax
21073.86575
vioscreen_lycopene
9116.931507
vioscreen_lysine
5.400877234
vioscreen_m_egg
2.042109576
vioscreen_m_fish_hi
0.9163835920000001
vioscreen_m_fish_lo
0.429972609
vioscreen_m_frank
0.269178082
vioscreen_m_meat
0.485123266
vioscreen_m_mpf
2.723369776
vioscreen_m_nutsd
0.07221918
vioscreen_m_organ
0.0
vioscreen_m_poult
0.6227123520000001
vioscreen_m_soy
0.003150685
vioscreen_magnes
378.4222603
vioscreen_maltitol
0.0
vioscreen_maltose
1.585178323
vioscreen_mangan
4.319506836
vioscreen_mannitol
0.32567119899999997
vioscreen_methhis3
9.253314961000001
vioscreen_methion
1.904356572
vioscreen_mfa141
0.075589047
vioscreen_mfa161
1.703397234
vioscreen_mfa181
34.19994381
vioscreen_mfa201
0.45200003
vioscreen_mfa221
0.204821903
vioscreen_mfatot
36.92714041
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4
vioscreen_natoco
13.16747913
vioscreen_nccglbr
125.71747649999999
vioscreen_nccglgr
87.95414705
vioscreen_niacin
17.08970061
vioscreen_niacineq
34.13687661
vioscreen_nitrogen
13.05150498
vioscreen_non_fried_fish_servings
1.935
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.08906852
vioscreen_oxalic
564.3302226
vioscreen_oxalicm
545.2774829
vioscreen_pantothe
6.719013538
vioscreen_pectins
4.619287443999999
vioscreen_pfa182
18.59964416
vioscreen_pfa183
2.5399999330000003
vioscreen_pfa184
0.041342466
vioscreen_pfa204
0.219780846
vioscreen_pfa205
0.144109595
vioscreen_pfa225
0.053369867
vioscreen_pfa226
0.310739721
vioscreen_pfatot
22.00592225
vioscreen_phenylal
3.6955071439999996
vioscreen_phosphor
1492.867466
vioscreen_phytic
504.4482449
vioscreen_pinitol
0.0026301370000000003
vioscreen_potass
3575.591781
vioscreen_procdate
10/28/15
vioscreen_proline
5.436795337
vioscreen_protanim
57.55185681
vioscreen_protein
81.25267551
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.69780608
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
523.0
vioscreen_retinol
515.5760702
vioscreen_rgrain
3.22331543
vioscreen_ribofla
2.50778123
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.47397
vioscreen_satoco
0.0
vioscreen_selenium
118.4068814
vioscreen_serine
3.9943560039999997
vioscreen_sfa100
0.77213695
vioscreen_sfa120
1.100493131
vioscreen_sfa140
3.354575797
vioscreen_sfa160
19.183287399999998
vioscreen_sfa170
0.149506859
vioscreen_sfa180
8.287534113
vioscreen_sfa200
0.167369863
vioscreen_sfa220
0.095041103
vioscreen_sfa40
0.954904217
vioscreen_sfa60
0.523342519
vioscreen_sfa80
0.43243834600000003
vioscreen_sfatot
35.48077108
vioscreen_sodium
4510.844521
vioscreen_sorbitol
0.040219182
vioscreen_srvid
18323.0
vioscreen_starch
68.68910531
vioscreen_started
3/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.45364405
vioscreen_sweet_servings
1.03922
vioscreen_tagatose
3.688520374
vioscreen_tfa161t
0.049287671
vioscreen_tfa181t
2.170410825
vioscreen_tfa182t
0.574547964
vioscreen_tgrain
4.9357258
vioscreen_thiamin
1.396109469
vioscreen_threonin
3.3139722010000003
vioscreen_time
19.0
vioscreen_totaltfa
2.8636441169999998
vioscreen_totcla
0.193808192
vioscreen_totfolat
483.51583899999997
vioscreen_totsugar
77.01298694
vioscreen_tryptoph
1.023972686
vioscreen_tyrosine
3.0672058939999998
vioscreen_user_id
18323.0
vioscreen_v_drkgr
1.329917761
vioscreen_v_orange
0.362794516
vioscreen_v_other
1.513534086
vioscreen_v_potato
0.242931502
vioscreen_v_starcy
0.022164384
vioscreen_v_tomato
0.589917786
vioscreen_v_total
4.061287323
vioscreen_valine
4.387451506000001
vioscreen_veg5_day
7.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.1
vioscreen_visit
1.0
vioscreen_vita_iu
29022.20822
vioscreen_vita_rae
1880.760445
vioscreen_vita_re
3245.9434929999998
vioscreen_vitb12
5.625068894
vioscreen_vitb6
1.7929588840000001
vioscreen_vitc
135.0103382
vioscreen_vitd
9.606957673
vioscreen_vitd2
0.002356164
vioscreen_vitd3
9.604738335
vioscreen_vitd_iu
384.27830689999996
vioscreen_vite_iu
19.62564212
vioscreen_vitk
883.5435787999999
vioscreen_water
4087.7164380000004
vioscreen_weight
Not provided
vioscreen_wgrain
1.7123834480000002
vioscreen_whole_grain_servings
1.2703
vioscreen_xylitol
0.032794524
vioscreen_zinc
10.89375401
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
74.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Occasionally (1-2 times/week)