American Gut Project; 10317.000023834
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632696
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023834
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
32.0
age_corrected
32.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23834
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
17.71
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
04/02/2015
collection month
April
collection season
Spring
collection time
13:24
collection_timestamp
2015-04-02 13:24
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Daily
country
USA
country of birth
Brazil
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
5.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
a85fd9ddb61f8bd062c2159b17ed970034f9c74db9b890c425b2a6dd53c73ec545399cc5212a1308de4963b426aab6e0c32552c0bb26a39a299a537828bd70da
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
40.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023834
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
2b79f9d6db7429ac
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.9787396990000001
vioscreen_a_cal
248.1423373
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.886739652
vioscreen_addsugar
9.152109643
vioscreen_adsugtot
7.9243284460000005
vioscreen_age
215.0
vioscreen_alanine
1.763095971
vioscreen_alcohol
30.58120719
vioscreen_alcohol_servings
1.9787400000000002
vioscreen_alphacar
211.1258562
vioscreen_alphtoce
6.464877194
vioscreen_alphtoco
5.856932256
vioscreen_arginine
2.071726007
vioscreen_ash
15.36002916
vioscreen_aspartam
0.0
vioscreen_aspartic
3.207753639
vioscreen_avcarb
105.5695527
vioscreen_bcodeid
Not provided
vioscreen_betacar
2044.163185
vioscreen_betacryp
36.47846747
vioscreen_betaine
92.23715753
vioscreen_betatoco
0.147260284
vioscreen_biochana
0.006493151
vioscreen_bmi
Not provided
vioscreen_caffeine
55.79898331
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.66496
vioscreen_calcium_servings
1.6714200000000001
vioscreen_calories
1340.2357880000002
vioscreen_carbo
114.74136340000001
vioscreen_cholest
155.355533
vioscreen_choline
176.90758780000002
vioscreen_clac9t11
0.092000015
vioscreen_clat10c12
0.017890414
vioscreen_copper
0.7150410690000001
vioscreen_coumest
0.031260274
vioscreen_cystine
0.518191779
vioscreen_d_cheese
0.457753388
vioscreen_d_milk
0.095315071
vioscreen_d_tot_soym
0.664958881
vioscreen_d_total
0.664958881
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
1.092411073
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.323178142
vioscreen_discfat_oil
27.88654484
vioscreen_discfat_sol
23.96520762
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.08783561
vioscreen_f_nj_citmlb
0.036684927
vioscreen_f_nj_other
0.044547946
vioscreen_f_nj_total
0.08126027400000001
vioscreen_f_other
0.044547946
vioscreen_f_total
0.132410953
vioscreen_fat
58.33585188
vioscreen_fiber
9.172135193999999
vioscreen_fibh2o
2.4916437019999997
vioscreen_fibinso
6.66378224
vioscreen_finished
4/1/15
vioscreen_fish_servings
0.8371200000000001
vioscreen_fol_deqv
300.5638485
vioscreen_fol_nat
117.03101459999999
vioscreen_fol_syn
107.9270013
vioscreen_formontn
0.000273973
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.06575
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.3
vioscreen_fructose
4.742877114
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
3.39649307
vioscreen_g_total
3.86443841
vioscreen_g_whl
0.46791783200000003
vioscreen_galactos
0.263068505
vioscreen_gammtoco
5.356903494
vioscreen_gender
false
vioscreen_genistn
1.263013448
vioscreen_glac
48.29189855
vioscreen_gltc
51.93641374
vioscreen_glucose
5.731862692999999
vioscreen_glutamic
8.347343215
vioscreen_glycine
1.546767143
vioscreen_glycitn
0.18523289899999998
vioscreen_grams
2127.032877
vioscreen_hei2010_dairy
3.8
vioscreen_hei2010_empty_calories
14.3
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
0.6
vioscreen_hei2010_greens_beans
3.0
vioscreen_hei2010_protien_foods
3.4
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
48.3
vioscreen_hei2010_sea_foods_plant_protiens
3.5
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
4.1
vioscreen_hei2010_whole_fruit
0.8
vioscreen_hei2010_whole_grains
2.3
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
0.6
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
6.8
vioscreen_hei_milk
3.8
vioscreen_hei_non_juice_frt
0.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.9
vioscreen_hei_score
46.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
8.7
vioscreen_hei_veg
4.1
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
1.030082222
vioscreen_inositol
0.156109588
vioscreen_iron
8.244162698
vioscreen_isoleuc
1.7433697430000001
vioscreen_isomalt
0.0
vioscreen_joules
5607.545204999999
vioscreen_juice_servings
0.10232999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
3.508219178
vioscreen_legumes
0.044684935
vioscreen_leucine
3.002027705
vioscreen_line_gi
162.0487051
vioscreen_low_fat_dairy_serving
0.11888
vioscreen_lutzeax
2732.757192
vioscreen_lycopene
3714.7239729999997
vioscreen_lysine
2.438438604
vioscreen_m_egg
0.300904115
vioscreen_m_fish_hi
0.210301355
vioscreen_m_fish_lo
0.26679453399999997
vioscreen_m_frank
0.265643854
vioscreen_m_meat
0.6002191410000001
vioscreen_m_mpf
1.698493351
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.35556164
vioscreen_m_soy
0.0968493
vioscreen_magnes
177.22558859999998
vioscreen_maltitol
0.0
vioscreen_maltose
1.7578354090000001
vioscreen_mangan
2.505945493
vioscreen_mannitol
0.191972602
vioscreen_methhis3
5.860383669
vioscreen_methion
0.847890441
vioscreen_mfa141
0.054712327000000005
vioscreen_mfa161
0.821424594
vioscreen_mfa181
24.85215914
vioscreen_mfa201
0.20049313100000002
vioscreen_mfa221
0.033835615
vioscreen_mfatot
26.09991974
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.856932256
vioscreen_nccglbr
79.2687714
vioscreen_nccglgr
55.44675193
vioscreen_niacin
10.40874023
vioscreen_niacineq
17.9689025
vioscreen_nitrogen
6.2818901170000006
vioscreen_non_fried_fish_servings
0.8371200000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.15043845
vioscreen_oxalic
150.13138909999998
vioscreen_oxalicm
131.21062709999998
vioscreen_pantothe
2.156438289
vioscreen_pectins
1.188904227
vioscreen_pfa182
8.192190844
vioscreen_pfa183
1.032164273
vioscreen_pfa184
0.007671233
vioscreen_pfa204
0.06158904
vioscreen_pfa205
0.029150687999999998
vioscreen_pfa225
0.015178085
vioscreen_pfa226
0.066712325
vioscreen_pfatot
9.443837623
vioscreen_phenylal
1.7555343
vioscreen_phosphor
665.2026969
vioscreen_phytic
326.2587115
vioscreen_pinitol
0.010273972
vioscreen_potass
1525.048801
vioscreen_procdate
10/28/15
vioscreen_proline
2.807808152
vioscreen_protanim
22.44657802
vioscreen_protein
38.68931935
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.2414223
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
505.0
vioscreen_retinol
209.55744860000001
vioscreen_rgrain
3.554959065
vioscreen_ribofla
0.876328643
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.24956
vioscreen_satoco
0.0
vioscreen_selenium
69.58087543
vioscreen_serine
1.831945132
vioscreen_sfa100
0.48367129799999997
vioscreen_sfa120
0.52145206
vioscreen_sfa140
1.8250411359999998
vioscreen_sfa160
10.27747886
vioscreen_sfa170
0.121369892
vioscreen_sfa180
3.877946075
vioscreen_sfa200
0.13898629999999998
vioscreen_sfa220
0.059205481
vioscreen_sfa40
0.607178111
vioscreen_sfa60
0.355013662
vioscreen_sfa80
0.223808205
vioscreen_sfatot
18.67438463
vioscreen_sodium
3984.181849
vioscreen_sorbitol
0.047999995999999996
vioscreen_srvid
18418.0
vioscreen_starch
63.66174551
vioscreen_started
4/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
7.328959091000001
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.930657541
vioscreen_tfa161t
0.031561645
vioscreen_tfa181t
1.087780762
vioscreen_tfa182t
0.18958903300000002
vioscreen_tgrain
4.1516434339999995
vioscreen_thiamin
0.888246552
vioscreen_threonin
1.478630338
vioscreen_time
51.0
vioscreen_totaltfa
1.318931517
vioscreen_totcla
0.11008217199999999
vioscreen_totfolat
224.95802650000002
vioscreen_totsugar
23.39605362
vioscreen_tryptoph
0.45432877200000005
vioscreen_tyrosine
1.316630073
vioscreen_user_id
18418.0
vioscreen_v_drkgr
0.15871233
vioscreen_v_orange
0.034328769
vioscreen_v_other
0.665342482
vioscreen_v_potato
0.151808219
vioscreen_v_starcy
0.033178084
vioscreen_v_tomato
0.167369863
vioscreen_v_total
1.210712422
vioscreen_valine
1.9944657
vioscreen_veg5_day
0.9
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.4
vioscreen_visit
1.0
vioscreen_vita_iu
4312.696575
vioscreen_vita_rae
390.22230310000003
vioscreen_vita_re
570.8859589
vioscreen_vitb12
1.8067123619999998
vioscreen_vitb6
0.9580274609999999
vioscreen_vitc
35.10537243
vioscreen_vitd
2.7238904980000003
vioscreen_vitd2
0.001287671
vioscreen_vitd3
2.722657755
vioscreen_vitd_iu
108.9556199
vioscreen_vite_iu
8.734904083
vioscreen_vitk
145.1536815
vioscreen_water
1879.352568
vioscreen_weight
Not provided
vioscreen_wgrain
0.596657531
vioscreen_whole_grain_servings
0.46792
vioscreen_xylitol
0.047616440999999995
vioscreen_zinc
5.270000134
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
45.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)