American Gut Project; 10317.000026461
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632739
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:34Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026461
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26461
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
24.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-03-31
collection month
March
collection season
Spring
collection time
09:15
collection_timestamp
2015-03-31 09:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
85.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
34aa3283c73b26f89b1284d56077772ce80e175f101e30de17c542a0e558efab1b0f965c4ebe0fe4ddea8bab19f0198b45825775b997231a54d47d1a8d7819a5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Daily
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026461
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
1102abb86569c823
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000136986
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.087643808999999
vioscreen_addsugar
28.01391535
vioscreen_adsugtot
25.40882117
vioscreen_age
215.0
vioscreen_alanine
3.8256167060000004
vioscreen_alcohol
0.002904109
vioscreen_alcohol_servings
0.00014
vioscreen_alphacar
747.3322774000001
vioscreen_alphtoce
11.77772769
vioscreen_alphtoco
10.44405568
vioscreen_arginine
4.272219472
vioscreen_ash
20.6393956
vioscreen_aspartam
0.0
vioscreen_aspartic
7.076000642
vioscreen_avcarb
128.0505886
vioscreen_bcodeid
Not provided
vioscreen_betacar
7237.908219
vioscreen_betacryp
25.31841021
vioscreen_betaine
193.2474957
vioscreen_betatoco
0.28178079699999997
vioscreen_biochana
0.010794521000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
89.36213613
vioscreen_calcium
true
vioscreen_calcium_avg
114.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
1.61537
vioscreen_calcium_servings
3.30515
vioscreen_calories
1776.671575
vioscreen_carbo
147.56242509999998
vioscreen_cholest
539.5533818
vioscreen_choline
530.6525684999999
vioscreen_clac9t11
0.100109592
vioscreen_clat10c12
0.018273975
vioscreen_copper
1.112986442
vioscreen_coumest
0.029506851
vioscreen_cystine
1.083671173
vioscreen_d_cheese
0.937452092
vioscreen_d_milk
0.09043835199999999
vioscreen_d_tot_soym
1.6153698230000002
vioscreen_d_total
1.6153698230000002
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.08778082400000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.574082466
vioscreen_discfat_oil
42.07704142
vioscreen_discfat_sol
40.45304206
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
0.20904110399999998
vioscreen_f_nj_citmlb
0.20410958899999998
vioscreen_f_nj_other
0.488876761
vioscreen_f_nj_total
0.693013732
vioscreen_f_other
0.488876761
vioscreen_f_total
0.697945205
vioscreen_fat
98.46288527
vioscreen_fiber
19.51082112
vioscreen_fibh2o
4.40819142
vioscreen_fibinso
15.15002943
vioscreen_finished
3/30/15
vioscreen_fish_servings
1.4453799999999999
vioscreen_fol_deqv
377.15428080000004
vioscreen_fol_nat
292.01194350000003
vioscreen_fol_syn
50.1020548
vioscreen_formontn
0.001205479
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.4
vioscreen_fructose
9.979152397
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
1.3922465290000001
vioscreen_g_total
4.09638304
vioscreen_g_whl
2.704192028
vioscreen_galactos
0.823068446
vioscreen_gammtoco
11.95073978
vioscreen_gender
false
vioscreen_genistn
0.096986295
vioscreen_glac
60.18276969
vioscreen_gltc
68.44994649
vioscreen_glucose
11.66416417
vioscreen_glutamic
13.81896003
vioscreen_glycine
3.218575757
vioscreen_glycitn
0.016356165
vioscreen_grams
2635.665068
vioscreen_hei2010_dairy
7.0
vioscreen_hei2010_empty_calories
15.3
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
2.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
75.5
vioscreen_hei2010_sea_foods_plant_protiens
4.1
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.9
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.5
vioscreen_hei_grains
3.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.0
vioscreen_hei_non_juice_frt
4.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.3
vioscreen_hei_score
69.3
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.156328928
vioscreen_inositol
0.06063014
vioscreen_iron
11.20761585
vioscreen_isoleuc
3.7523287000000005
vioscreen_isomalt
0.0
vioscreen_joules
7433.590411
vioscreen_juice_servings
0.009859999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
10.75871214
vioscreen_legumes
0.155835619
vioscreen_leucine
6.301369863
vioscreen_line_gi
286.5831764
vioscreen_low_fat_dairy_serving
0.5874199999999999
vioscreen_lutzeax
6718.995204999999
vioscreen_lycopene
970.0745719
vioscreen_lysine
5.709643889
vioscreen_m_egg
2.058054801
vioscreen_m_fish_hi
0.664136996
vioscreen_m_fish_lo
0.159589041
vioscreen_m_frank
1.792794507
vioscreen_m_meat
1.002465737
vioscreen_m_mpf
4.138383254
vioscreen_m_nutsd
0.341424644
vioscreen_m_organ
0.0
vioscreen_m_poult
0.519424648
vioscreen_m_soy
0.0007945210000000001
vioscreen_magnes
292.3477098
vioscreen_maltitol
0.0
vioscreen_maltose
3.110219793
vioscreen_mangan
4.503424658
vioscreen_mannitol
0.183013686
vioscreen_methhis3
12.93988923
vioscreen_methion
1.924081964
vioscreen_mfa141
0.137616448
vioscreen_mfa161
1.7163014030000001
vioscreen_mfa181
39.72907213
vioscreen_mfa201
0.378657511
vioscreen_mfa221
0.129506851
vioscreen_mfatot
42.37911494
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.44405568
vioscreen_nccglbr
100.3203874
vioscreen_nccglgr
70.16896404
vioscreen_niacin
16.0186296
vioscreen_niacineq
30.1398598
vioscreen_nitrogen
13.08649267
vioscreen_non_fried_fish_servings
1.4453799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.2419997119999997
vioscreen_oxalic
273.5006849
vioscreen_oxalicm
258.2361943
vioscreen_pantothe
5.3098358569999995
vioscreen_pectins
2.97928818
vioscreen_pfa182
15.82238335
vioscreen_pfa183
1.8439175540000001
vioscreen_pfa184
0.028876712000000002
vioscreen_pfa204
0.235616417
vioscreen_pfa205
0.09515069400000001
vioscreen_pfa225
0.047013698
vioscreen_pfa226
0.227917836
vioscreen_pfatot
18.38599904
vioscreen_phenylal
3.620931213
vioscreen_phosphor
1336.358219
vioscreen_phytic
601.8227312000001
vioscreen_pinitol
0.003616438
vioscreen_potass
2461.463527
vioscreen_procdate
10/28/15
vioscreen_proline
4.932328901
vioscreen_protanim
58.56290133
vioscreen_protein
81.11435681
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.54233198
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
508.0
vioscreen_retinol
413.5603596
vioscreen_rgrain
1.4744657330000002
vioscreen_ribofla
1.820986061
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.8970100000000001
vioscreen_satoco
0.0
vioscreen_selenium
119.4328125
vioscreen_serine
4.038081924
vioscreen_sfa100
0.51408219
vioscreen_sfa120
0.5766028
vioscreen_sfa140
2.4294794790000003
vioscreen_sfa160
17.11717947
vioscreen_sfa170
0.161452066
vioscreen_sfa180
6.474163902000001
vioscreen_sfa200
0.224876717
vioscreen_sfa220
0.157260289
vioscreen_sfa40
0.593452098
vioscreen_sfa60
0.323616446
vioscreen_sfa80
0.22816440100000002
vioscreen_sfatot
29.30164277
vioscreen_sodium
3968.474315
vioscreen_sorbitol
0.137397264
vioscreen_srvid
18399.0
vioscreen_starch
55.66528789
vioscreen_started
3/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
23.45504334
vioscreen_sweet_servings
0.09487999999999999
vioscreen_tagatose
4.725178256
vioscreen_tfa161t
0.086767129
vioscreen_tfa181t
1.791506916
vioscreen_tfa182t
0.37460277
vioscreen_tgrain
4.25235579
vioscreen_thiamin
1.110054831
vioscreen_threonin
3.134246575
vioscreen_time
24.0
vioscreen_totaltfa
2.401150471
vioscreen_totcla
0.119095904
vioscreen_totfolat
342.11386989999994
vioscreen_totsugar
60.343498499999995
vioscreen_tryptoph
0.849315068
vioscreen_tyrosine
2.8713696619999998
vioscreen_user_id
18399.0
vioscreen_v_drkgr
0.568191737
vioscreen_v_orange
0.243890402
vioscreen_v_other
0.865698744
vioscreen_v_potato
0.182630126
vioscreen_v_starcy
0.115945215
vioscreen_v_tomato
0.055835619
vioscreen_v_total
2.032191781
vioscreen_valine
4.352849422
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.0
vioscreen_visit
1.0
vioscreen_vita_iu
14084.44384
vioscreen_vita_rae
1048.9138699999999
vioscreen_vita_re
1684.2667809999998
vioscreen_vitb12
4.821150605
vioscreen_vitb6
1.712794641
vioscreen_vitc
60.17339469
vioscreen_vitd
7.805397848999999
vioscreen_vitd2
0.001232877
vioscreen_vitd3
7.80419253
vioscreen_vitd_iu
312.215914
vioscreen_vite_iu
15.58531678
vioscreen_vitk
290.9455693
vioscreen_water
2307.855822
vioscreen_weight
Not provided
vioscreen_wgrain
2.777917815
vioscreen_whole_grain_servings
2.70419
vioscreen_xylitol
0.024164388
vioscreen_zinc
11.42904003
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
66.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Regularly (3-5 times/week)