American Gut Project; 10317.000030976
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634225
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030976
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030976
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
23.56
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/10/2015
collection month
August
collection season
Summer
collection time
07:45
collection_timestamp
2015-08-10 07:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
New England
elevation
0.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
314ec5e664c1c91785a0e2af4dc2ea9b9fec5d56eceb21d36d224efef0e0b228e9c8481b4dd6e17da7220cef7077b0407d299cbd4eb1e20b9e608c4602552796
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.3
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-70.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030976
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
99acf8e887f91464
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.29630127
vioscreen_addsugar
12.68789063
vioscreen_adsugtot
11.76624706
vioscreen_age
215.0
vioscreen_alanine
8.592328633
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
10323.2637
vioscreen_alphtoce
21.22161146
vioscreen_alphtoco
19.61169868
vioscreen_arginine
9.541041042
vioscreen_ash
31.54978596
vioscreen_aspartam
0.0
vioscreen_aspartic
14.44104104
vioscreen_avcarb
113.6501712
vioscreen_bcodeid
Not provided
vioscreen_betacar
32764.471230000003
vioscreen_betacryp
178.9879495
vioscreen_betaine
74.4572667
vioscreen_betatoco
0.296356138
vioscreen_biochana
0.004328767
vioscreen_bmi
Not provided
vioscreen_caffeine
236.6702483
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.15389
vioscreen_calcium_servings
2.38247
vioscreen_calories
2760.761815
vioscreen_carbo
147.94366440000002
vioscreen_cholest
1145.438699
vioscreen_choline
1124.907363
vioscreen_clac9t11
0.195260286
vioscreen_clat10c12
0.069589045
vioscreen_copper
1.8758904440000002
vioscreen_coumest
0.17739726
vioscreen_cystine
2.083616325
vioscreen_d_cheese
0.002684932
vioscreen_d_milk
0.151095895
vioscreen_d_tot_soym
0.153890416
vioscreen_d_total
0.153890416
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.243315062
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.2805754360000003
vioscreen_discfat_oil
62.35988335
vioscreen_discfat_sol
61.50466075
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002109589
vioscreen_f_citmlb
0.589452038
vioscreen_f_nj_citmlb
0.5758356379999999
vioscreen_f_nj_other
1.856575242
vioscreen_f_nj_total
2.432410839
vioscreen_f_other
1.856575242
vioscreen_f_total
2.446027531
vioscreen_fat
181.32675509999999
vioscreen_fiber
34.29383562
vioscreen_fibh2o
11.17805544
vioscreen_fibinso
23.13098245
vioscreen_finished
8/6/15
vioscreen_fish_servings
4.75327
vioscreen_fol_deqv
516.5764555
vioscreen_fol_nat
511.43369010000004
vioscreen_fol_syn
3.025753157
vioscreen_formontn
0.000109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.9
vioscreen_fructose
26.42164758
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.156109577
vioscreen_g_total
0.156109577
vioscreen_g_whl
0.0
vioscreen_galactos
0.166410943
vioscreen_gammtoco
14.61397287
vioscreen_gender
false
vioscreen_genistn
0.07528767
vioscreen_glac
39.3095061
vioscreen_gltc
48.6851723
vioscreen_glucose
29.69594392
vioscreen_glutamic
22.26720623
vioscreen_glycine
7.61841021
vioscreen_glycitn
0.00005479999999999999
vioscreen_grams
4013.00274
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
18.4
vioscreen_hei2010_fatty_acids
9.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
4.46649287
vioscreen_inositol
0.120986291
vioscreen_iron
17.59238415
vioscreen_isoleuc
6.906849984
vioscreen_isomalt
0.0
vioscreen_joules
11551.03425
vioscreen_juice_servings
0.02723
vioscreen_lactitol
0.0
vioscreen_lactose
1.4136437819999998
vioscreen_legumes
0.0
vioscreen_leucine
11.51041042
vioscreen_line_gi
342.119863
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
22705.790409999998
vioscreen_lycopene
882.1196062000001
vioscreen_lysine
11.77725947
vioscreen_m_egg
4.056959011
vioscreen_m_fish_hi
1.235315109
vioscreen_m_fish_lo
1.473479472
vioscreen_m_frank
0.607561671
vioscreen_m_meat
9.221397421
vioscreen_m_mpf
13.83953473
vioscreen_m_nutsd
0.07156164599999999
vioscreen_m_organ
0.135369863
vioscreen_m_poult
1.166493121
vioscreen_m_soy
0.000219178
vioscreen_magnes
376.65214039999995
vioscreen_maltitol
0.0
vioscreen_maltose
0.410301355
vioscreen_mangan
2.999507037
vioscreen_mannitol
0.661068475
vioscreen_methhis3
50.64353596
vioscreen_methion
3.8000545139999997
vioscreen_mfa141
0.38556163200000004
vioscreen_mfa161
4.294137281
vioscreen_mfa181
78.76364512
vioscreen_mfa201
0.863917688
vioscreen_mfa221
0.217534251
vioscreen_mfatot
84.86030073
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
19.61169868
vioscreen_nccglbr
84.79831978
vioscreen_nccglgr
59.30783926
vioscreen_niacin
33.83208209
vioscreen_niacineq
58.81832727
vioscreen_nitrogen
24.02435788
vioscreen_non_fried_fish_servings
4.75327
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.240766468
vioscreen_oxalic
409.0824486
vioscreen_oxalicm
422.7097603
vioscreen_pantothe
10.51005324
vioscreen_pectins
8.245123207
vioscreen_pfa182
26.31471265
vioscreen_pfa183
3.510930811
vioscreen_pfa184
0.04410959
vioscreen_pfa204
0.530520546
vioscreen_pfa205
0.18432876399999998
vioscreen_pfa225
0.073671236
vioscreen_pfa226
0.429150683
vioscreen_pfatot
31.29898598
vioscreen_phenylal
6.199177947999999
vioscreen_phosphor
1771.2916100000002
vioscreen_phytic
297.7613014
vioscreen_pinitol
0.0
vioscreen_potass
5049.841781
vioscreen_procdate
10/28/15
vioscreen_proline
6.566081844
vioscreen_protanim
131.4869542
vioscreen_protein
148.95105949999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.46734268
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
224.0
vioscreen_retinol
670.5357021000001
vioscreen_rgrain
0.093726025
vioscreen_ribofla
3.111315082
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.9233700000000002
vioscreen_satoco
0.0
vioscreen_selenium
201.3279966
vioscreen_serine
6.7668222920000005
vioscreen_sfa100
0.125013702
vioscreen_sfa120
0.167232869
vioscreen_sfa140
1.9315616969999998
vioscreen_sfa160
31.53188677
vioscreen_sfa170
0.235561632
vioscreen_sfa180
13.05799979
vioscreen_sfa200
0.311671197
vioscreen_sfa220
0.18123286
vioscreen_sfa40
0.02221918
vioscreen_sfa60
0.011342465
vioscreen_sfa80
0.012219178999999998
vioscreen_sfatot
47.83523116
vioscreen_sodium
5584.790068
vioscreen_sorbitol
1.481726074
vioscreen_srvid
20335.0
vioscreen_starch
13.82219071
vioscreen_started
8/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.30627676
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.000767123
vioscreen_tfa161t
0.138904112
vioscreen_tfa181t
3.3720549280000003
vioscreen_tfa182t
0.494383553
vioscreen_tgrain
0.093726025
vioscreen_thiamin
1.5281096159999998
vioscreen_threonin
6.356437955
vioscreen_time
11.0
vioscreen_totaltfa
4.0239722680000005
vioscreen_totcla
0.26282194
vioscreen_totfolat
514.4594606
vioscreen_totsugar
78.69414063
vioscreen_tryptoph
1.501040942
vioscreen_tyrosine
5.049972576
vioscreen_user_id
20335.0
vioscreen_v_drkgr
1.4196712130000002
vioscreen_v_orange
1.9867672440000002
vioscreen_v_other
2.1411504040000002
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.081123289
vioscreen_v_total
5.628684851
vioscreen_valine
7.532163688
vioscreen_veg5_day
10.5
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
11.3
vioscreen_visit
1.0
vioscreen_vita_iu
65594.14795
vioscreen_vita_rae
3838.5041100000003
vioscreen_vita_re
7006.470548
vioscreen_vitb12
12.02235526
vioscreen_vitb6
3.678273157
vioscreen_vitc
178.7299658
vioscreen_vitd
12.9098071
vioscreen_vitd2
0.001178082
vioscreen_vitd3
12.90860178
vioscreen_vitd_iu
516.3922838000001
vioscreen_vite_iu
29.22793771
vioscreen_vitk
982.1049658
vioscreen_water
3538.779452
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.08978082300000001
vioscreen_zinc
21.31786441
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never