American Gut Project; 10317.000029377
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634022
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029377
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29377
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1944.0
bmi
27.28
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
07:30
collection_timestamp
2015-07-27 07:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
4.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
168.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
6d31423a3fcc66f09ff59508da7be73a7a71bb1efd7d1c772ca905d725fc2b1945f1cc41f903d12ccb8bcef2367f7d2a53e2da011e50a1abe506e508aa3156a7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029377
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
0b2819ee079be5a6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.5067670430000002
vioscreen_addsugar
7.18920564
vioscreen_adsugtot
6.971561965
vioscreen_age
215.0
vioscreen_alanine
4.3264655130000005
vioscreen_alcohol
0.000520548
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1882.863527
vioscreen_alphtoce
9.361973593
vioscreen_alphtoco
8.425534434
vioscreen_arginine
4.807863335
vioscreen_ash
16.41917541
vioscreen_aspartam
0.0
vioscreen_aspartic
8.132054661
vioscreen_avcarb
85.92269371
vioscreen_bcodeid
Not provided
vioscreen_betacar
9215.008904
vioscreen_betacryp
76.96673801
vioscreen_betaine
66.831753
vioscreen_betatoco
0.142986308
vioscreen_biochana
0.005369863000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
119.41016699999999
vioscreen_calcium
true
vioscreen_calcium_avg
1000.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.51718
vioscreen_calcium_servings
1.6195899999999999
vioscreen_calories
1299.4106160000001
vioscreen_carbo
100.991738
vioscreen_cholest
884.1511985999999
vioscreen_choline
820.278339
vioscreen_clac9t11
0.069643836
vioscreen_clat10c12
0.01621918
vioscreen_copper
1.017178052
vioscreen_coumest
0.000164384
vioscreen_cystine
1.220630134
vioscreen_d_cheese
0.266082178
vioscreen_d_milk
0.251095915
vioscreen_d_tot_soym
0.517178052
vioscreen_d_total
0.517178052
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.058794523
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.18306868
vioscreen_discfat_oil
15.15476777
vioscreen_discfat_sol
29.43191888
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002
vioscreen_f_citmlb
0.483479455
vioscreen_f_nj_citmlb
0.47794519700000004
vioscreen_f_nj_other
1.080082222
vioscreen_f_nj_total
1.558027544
vioscreen_f_other
1.080082222
vioscreen_f_total
1.563561844
vioscreen_fat
66.58895548
vioscreen_fiber
15.06926102
vioscreen_fibh2o
3.737479599
vioscreen_fibinso
11.33638297
vioscreen_finished
6/25/15
vioscreen_fish_servings
2.14404
vioscreen_fol_deqv
318.65216180000004
vioscreen_fol_nat
305.3470034
vioscreen_fol_syn
7.825233439
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
12.68958958
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.157232885
vioscreen_g_total
0.207589053
vioscreen_g_whl
0.050356162
vioscreen_galactos
0.054876719000000004
vioscreen_gammtoco
8.581698817000001
vioscreen_gender
false
vioscreen_genistn
0.008575343000000001
vioscreen_glac
43.41909514
vioscreen_gltc
49.0421661
vioscreen_glucose
14.97410905
vioscreen_glutamic
12.31090406
vioscreen_glycine
3.4288768189999996
vioscreen_glycitn
0.0
vioscreen_grams
2739.550856
vioscreen_hei2010_dairy
3.1
vioscreen_hei2010_empty_calories
17.8
vioscreen_hei2010_fatty_acids
4.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.7
vioscreen_hei_sat_fat
0.1
vioscreen_hei_score
61.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.1
vioscreen_height
Not provided
vioscreen_histidin
2.2696983019999997
vioscreen_inositol
0.042630136
vioscreen_iron
8.97038407
vioscreen_isoleuc
3.827478863
vioscreen_isomalt
0.0
vioscreen_joules
5436.733904
vioscreen_juice_servings
0.011040000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
3.0157260010000004
vioscreen_legumes
0.0
vioscreen_leucine
6.290986193999999
vioscreen_line_gi
216.66686639999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
9492.127397
vioscreen_lycopene
1370.978938
vioscreen_lysine
6.061725439
vioscreen_m_egg
4.002383548
vioscreen_m_fish_hi
1.221863044
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
2.340273839
vioscreen_m_mpf
4.623725787
vioscreen_m_nutsd
0.578904118
vioscreen_m_organ
0.0
vioscreen_m_poult
1.061589071
vioscreen_m_soy
0.0
vioscreen_magnes
273.606464
vioscreen_maltitol
0.0
vioscreen_maltose
0.380219175
vioscreen_mangan
3.1327670160000003
vioscreen_mannitol
0.122246583
vioscreen_methhis3
19.35673962
vioscreen_methion
2.089698603
vioscreen_mfa141
0.098027394
vioscreen_mfa161
1.372794541
vioscreen_mfa181
23.4772073
vioscreen_mfa201
0.369095894
vioscreen_mfa221
0.244630139
vioscreen_mfatot
25.6864405
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.425534434
vioscreen_nccglbr
67.6359482
vioscreen_nccglgr
47.30607877
vioscreen_niacin
15.2064908
vioscreen_niacineq
29.87559129
vioscreen_nitrogen
12.82991893
vioscreen_non_fried_fish_servings
2.14404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.868520575
vioscreen_oxalic
433.72692639999997
vioscreen_oxalicm
450.163613
vioscreen_pantothe
6.047971961
vioscreen_pectins
3.689123368
vioscreen_pfa182
9.566081844
vioscreen_pfa183
1.152027371
vioscreen_pfa184
0.053506846
vioscreen_pfa204
0.39726027399999997
vioscreen_pfa205
0.173726027
vioscreen_pfa225
0.07583561700000001
vioscreen_pfa226
0.414301373
vioscreen_pfatot
11.89884819
vioscreen_phenylal
3.598027478
vioscreen_phosphor
1052.8651539999998
vioscreen_phytic
208.0697988
vioscreen_pinitol
0.0
vioscreen_potass
3051.473973
vioscreen_procdate
10/28/15
vioscreen_proline
3.6136712060000002
vioscreen_protanim
67.95303938
vioscreen_protein
79.87284354
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.92024561
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
363.0
vioscreen_retinol
478.35684929999996
vioscreen_rgrain
0.160164381
vioscreen_ribofla
1.937205192
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.65904
vioscreen_satoco
0.0
vioscreen_selenium
120.624711
vioscreen_serine
4.171205453
vioscreen_sfa100
0.282876671
vioscreen_sfa120
0.323013703
vioscreen_sfa140
1.395534233
vioscreen_sfa160
13.04315069
vioscreen_sfa170
0.10424657300000001
vioscreen_sfa180
5.354876458000001
vioscreen_sfa200
0.112520547
vioscreen_sfa220
0.132273969
vioscreen_sfa40
0.332356158
vioscreen_sfa60
0.187095893
vioscreen_sfa80
0.127205491
vioscreen_sfatot
21.60578312
vioscreen_sodium
2685.4604449999997
vioscreen_sorbitol
0.017890409
vioscreen_srvid
19974.0
vioscreen_starch
32.66758883
vioscreen_started
6/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
12.65679447
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
0.763150735
vioscreen_tfa161t
0.032876712
vioscreen_tfa181t
1.705945326
vioscreen_tfa182t
0.250849329
vioscreen_tgrain
0.211369867
vioscreen_thiamin
0.794027417
vioscreen_threonin
3.44997291
vioscreen_time
18.0
vioscreen_totaltfa
1.9953151759999999
vioscreen_totcla
0.087150683
vioscreen_totfolat
313.1722389
vioscreen_totsugar
44.10185681
vioscreen_tryptoph
0.8802193420000001
vioscreen_tyrosine
2.86706844
vioscreen_user_id
19974.0
vioscreen_v_drkgr
0.377260266
vioscreen_v_orange
0.320136982
vioscreen_v_other
1.074547922
vioscreen_v_potato
0.795178055
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.133150681
vioscreen_v_total
2.7002463139999997
vioscreen_valine
4.276164517
vioscreen_veg5_day
4.4
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.4
vioscreen_visit
1.0
vioscreen_vita_iu
18586.13425
vioscreen_vita_rae
1327.9331339999999
vioscreen_vita_re
2177.51113
vioscreen_vitb12
5.473424791
vioscreen_vitb6
2.104849369
vioscreen_vitc
91.60242937
vioscreen_vitd
10.96838412
vioscreen_vitd2
0.0
vioscreen_vitd3
10.96838412
vioscreen_vitd_iu
438.73536490000004
vioscreen_vite_iu
12.57301209
vioscreen_vitk
271.5749786
vioscreen_water
2499.630479
vioscreen_weight
Not provided
vioscreen_wgrain
0.051178083
vioscreen_whole_grain_servings
0.05036
vioscreen_xylitol
0.030794522999999997
vioscreen_zinc
9.007314186
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)