American Gut Project; 10317.000029430
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633716
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:05Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029430
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29430
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
20.85
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/01/2015
collection month
July
collection season
Summer
collection time
15:30
collection_timestamp
2015-07-01 15:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
132.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
263761f04aeabd9dcba8572ae102e3907486b8b72bc750a37f095aafa7f1c8770890752ff750bb896709792fcc461b46ca1581abb244d194b28371e08f9f6d68
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
53.2
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-1.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029430
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
21d668379858965c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.678712275
vioscreen_addsugar
30.80756368
vioscreen_adsugtot
25.69430116
vioscreen_age
215.0
vioscreen_alanine
2.413233091
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
4187.375685
vioscreen_alphtoce
15.41348058
vioscreen_alphtoco
14.57098673
vioscreen_arginine
3.281287792
vioscreen_ash
24.37610766
vioscreen_aspartam
0.0
vioscreen_aspartic
5.3586576280000005
vioscreen_avcarb
340.2274829
vioscreen_bcodeid
Not provided
vioscreen_betacar
15604.260269999999
vioscreen_betacryp
124.5074914
vioscreen_betaine
84.39932577
vioscreen_betatoco
0.410849333
vioscreen_biochana
0.035424656
vioscreen_bmi
Not provided
vioscreen_caffeine
479.3740154
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.00877
vioscreen_calcium_servings
1.87578
vioscreen_calories
2171.9761989999997
vioscreen_carbo
391.08480310000004
vioscreen_cholest
6.78265732
vioscreen_choline
256.2009204
vioscreen_clac9t11
0.002273973
vioscreen_clat10c12
0.002383562
vioscreen_copper
2.66539708
vioscreen_coumest
0.328082192
vioscreen_cystine
0.855945159
vioscreen_d_cheese
0.007534246999999999
vioscreen_d_milk
0.001232877
vioscreen_d_tot_soym
0.33890412200000003
vioscreen_d_total
0.008767123
vioscreen_d_yogurt
0.0
vioscreen_daidzein
2.678246569
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.891972623
vioscreen_discfat_oil
21.3184664
vioscreen_discfat_sol
2.7529587839999996
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004
vioscreen_f_citmlb
1.30323294
vioscreen_f_nj_citmlb
1.290794477
vioscreen_f_nj_other
2.483205466
vioscreen_f_nj_total
3.7740274510000003
vioscreen_f_other
6.251670858
vioscreen_f_total
7.554930972
vioscreen_fat
59.7369863
vioscreen_fiber
50.85816567
vioscreen_fibh2o
12.48712409
vioscreen_fibinso
38.40208423
vioscreen_finished
6/26/15
vioscreen_fish_servings
0.34788
vioscreen_fol_deqv
725.0842466
vioscreen_fol_nat
676.7971318
vioscreen_fol_syn
28.37109643
vioscreen_formontn
0.002876712
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
10.0
vioscreen_frtsumm
15.1
vioscreen_fructose
101.26817209999999
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
1.20002734
vioscreen_g_total
5.357123221
vioscreen_g_whl
4.157068373
vioscreen_galactos
0.409835606
vioscreen_gammtoco
6.673397367000001
vioscreen_gender
false
vioscreen_genistn
3.375150832
vioscreen_glac
144.4274829
vioscreen_gltc
160.90196919999997
vioscreen_glucose
80.35268622
vioscreen_glutamic
10.86586178
vioscreen_glycine
2.086219098
vioscreen_glycitn
0.338191788
vioscreen_grams
8140.067808
vioscreen_hei2010_dairy
1.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.1
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
1.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.6
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.127945239
vioscreen_inositol
0.541616445
vioscreen_iron
16.36986435
vioscreen_isoleuc
1.7030136319999998
vioscreen_isomalt
0.0
vioscreen_joules
9087.544521
vioscreen_juice_servings
7.561839999999999
vioscreen_lactitol
0.0
vioscreen_lactose
0.016246575
vioscreen_legumes
0.262986296
vioscreen_leucine
3.170657641
vioscreen_line_gi
828.7196918
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6310.423288
vioscreen_lycopene
18332.2137
vioscreen_lysine
2.265205613
vioscreen_m_egg
0.002219178
vioscreen_m_fish_hi
0.050794523
vioscreen_m_fish_lo
0.14742466099999998
vioscreen_m_frank
0.0
vioscreen_m_meat
0.07536986400000001
vioscreen_m_mpf
0.273616446
vioscreen_m_nutsd
2.1764109990000002
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.332712315
vioscreen_magnes
614.3300942000001
vioscreen_maltitol
0.0
vioscreen_maltose
3.849863214
vioscreen_mangan
13.33041123
vioscreen_mannitol
0.930657541
vioscreen_methhis3
1.132821948
vioscreen_methion
0.6624657620000001
vioscreen_mfa141
0.000767123
vioscreen_mfa161
1.058931366
vioscreen_mfa181
29.23386398
vioscreen_mfa201
0.248328765
vioscreen_mfa221
0.001808219
vioscreen_mfatot
30.66882224
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
14.57098673
vioscreen_nccglbr
244.34443489999998
vioscreen_nccglgr
170.91068069999997
vioscreen_niacin
18.09295939
vioscreen_niacineq
27.04602686
vioscreen_nitrogen
8.321781357
vioscreen_non_fried_fish_servings
0.34788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.015479519
vioscreen_oxalic
547.2981592
vioscreen_oxalicm
544.1440067999999
vioscreen_pantothe
6.455151033
vioscreen_pectins
9.44432858
vioscreen_pfa182
12.2206844
vioscreen_pfa183
0.996849415
vioscreen_pfa184
0.001041096
vioscreen_pfa204
0.005123288
vioscreen_pfa205
0.005068493
vioscreen_pfa225
0.0013698629999999998
vioscreen_pfa226
0.011123289
vioscreen_pfatot
13.40553296
vioscreen_phenylal
2.165315142
vioscreen_phosphor
1219.071318
vioscreen_phytic
1326.865497
vioscreen_pinitol
0.023863014
vioscreen_potass
6404.426027
vioscreen_procdate
10/28/15
vioscreen_proline
2.2888768859999997
vioscreen_protanim
2.497205426
vioscreen_protein
49.43378639
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
46.93683112
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
361.0
vioscreen_retinol
20.40501391
vioscreen_rgrain
1.275643795
vioscreen_ribofla
1.576657481
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
10.65173
vioscreen_satoco
0.0
vioscreen_selenium
65.69797196
vioscreen_serine
2.313890431
vioscreen_sfa100
0.005780822
vioscreen_sfa120
0.068739726
vioscreen_sfa140
0.113780819
vioscreen_sfa160
7.419972041
vioscreen_sfa170
0.005780822
vioscreen_sfa180
1.278684935
vioscreen_sfa200
0.18994521
vioscreen_sfa220
0.343232873
vioscreen_sfa40
0.003589041
vioscreen_sfa60
0.001287671
vioscreen_sfa80
0.0038082190000000003
vioscreen_sfatot
9.691233679
vioscreen_sodium
2974.474315
vioscreen_sorbitol
3.0983562310000003
vioscreen_srvid
19984.0
vioscreen_starch
88.30637307
vioscreen_started
6/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
26.41835402
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.002136986
vioscreen_tfa161t
0.006712328
vioscreen_tfa181t
0.197616452
vioscreen_tfa182t
0.025232877
vioscreen_tgrain
5.415808273
vioscreen_thiamin
1.634712449
vioscreen_threonin
1.709040561
vioscreen_time
40.0
vioscreen_totaltfa
0.23578083600000002
vioscreen_totcla
0.005315069
vioscreen_totfolat
705.1682791000001
vioscreen_totsugar
214.42260269999997
vioscreen_tryptoph
0.536739736
vioscreen_tyrosine
1.310657491
vioscreen_user_id
19984.0
vioscreen_v_drkgr
0.961561647
vioscreen_v_orange
0.836684888
vioscreen_v_other
1.6640001269999998
vioscreen_v_potato
0.103643841
vioscreen_v_starcy
0.387917798
vioscreen_v_tomato
2.636684972
vioscreen_v_total
6.590494569
vioscreen_valine
2.116794367
vioscreen_veg5_day
14.6
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
13.0
vioscreen_visit
1.0
vioscreen_vita_iu
29674.9589
vioscreen_vita_rae
1500.425
vioscreen_vita_re
2980.439041
vioscreen_vitb12
0.158438351
vioscreen_vitb6
2.3309314469999998
vioscreen_vitc
216.39246580000002
vioscreen_vitd
0.698630137
vioscreen_vitd2
0.291369859
vioscreen_vitd3
0.407260257
vioscreen_vitd_iu
27.94520548
vioscreen_vite_iu
21.72991759
vioscreen_vitk
302.23283389999995
vioscreen_water
7616.920548
vioscreen_weight
Not provided
vioscreen_wgrain
4.140137053
vioscreen_whole_grain_servings
4.15707
vioscreen_xylitol
0.09561643199999999
vioscreen_zinc
9.949478275
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
71.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily