American Gut Project; 10317.000018355
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632405
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:40:44Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000018355
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
18355
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1972.0
bmi
19.77
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2014-09-20
collection month
September
collection season
Fall
collection time
07:00
collection_timestamp
2014-09-20 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
237.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
a8bc6977db3535ae85927c8bb95854b408057f64f72ce0373866f00c710ca41d04132d0701ef92f22b32b1cc6e892c906e0e40006810a8b310e6c1b9a8b3ff2d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
29.9
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-98.0
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000018355
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
a754363f7517baf2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.105397264
vioscreen_a_cal
12.91161708
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.210985659
vioscreen_addsugar
38.84197346
vioscreen_adsugtot
34.6842439
vioscreen_age
214.0
vioscreen_alanine
3.8033975680000003
vioscreen_alcohol
1.645780882
vioscreen_alcohol_servings
0.1054
vioscreen_alphacar
1693.756507
vioscreen_alphtoce
14.06096292
vioscreen_alphtoco
12.47846479
vioscreen_arginine
4.7977254789999995
vioscreen_ash
19.61227793
vioscreen_aspartam
0.0
vioscreen_aspartic
7.418958021
vioscreen_avcarb
197.5544735
vioscreen_bcodeid
Not provided
vioscreen_betacar
8561.135616
vioscreen_betacryp
200.0034889
vioscreen_betaine
230.5970462
vioscreen_betatoco
0.657013692
vioscreen_biochana
0.010657535
vioscreen_bmi
Not provided
vioscreen_caffeine
215.7985659
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.61737
vioscreen_calcium_servings
2.53578
vioscreen_calories
1816.372089
vioscreen_carbo
226.9696276
vioscreen_cholest
143.3972496
vioscreen_choline
296.5066567
vioscreen_clac9t11
0.042684934
vioscreen_clat10c12
0.012328767
vioscreen_copper
1.598602713
vioscreen_coumest
0.09476712400000001
vioscreen_cystine
1.039424698
vioscreen_d_cheese
0.47482191100000004
vioscreen_d_milk
0.142547931
vioscreen_d_tot_soym
0.617369769
vioscreen_d_total
0.617369769
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.49090409
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.273753712
vioscreen_discfat_oil
30.80320794
vioscreen_discfat_sol
22.917974100000002
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000547945
vioscreen_f_citmlb
0.7923288009999999
vioscreen_f_nj_citmlb
0.46695891100000003
vioscreen_f_nj_other
0.90093158
vioscreen_f_nj_total
1.367890408
vioscreen_f_other
1.1168768059999998
vioscreen_f_total
1.909205439
vioscreen_fat
71.55063142
vioscreen_fiber
29.37827483
vioscreen_fibh2o
7.976029404
vioscreen_fibinso
21.48328874
vioscreen_finished
10/9/14
vioscreen_fish_servings
2.07712
vioscreen_fol_deqv
627.0958476
vioscreen_fol_nat
359.356464
vioscreen_fol_syn
157.441417
vioscreen_formontn
0.0035342459999999996
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.08402000000000001
vioscreen_frt5_day
2.7
vioscreen_frtsumm
3.8
vioscreen_fructose
25.9418049
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.276959145
vioscreen_g_total
6.447424817999999
vioscreen_g_whl
3.1704656730000003
vioscreen_galactos
0.356164384
vioscreen_gammtoco
12.71227258
vioscreen_gender
false
vioscreen_genistn
0.680219175
vioscreen_glac
96.28160317
vioscreen_gltc
107.0563142
vioscreen_glucose
25.99813249
vioscreen_glutamic
15.34361622
vioscreen_glycine
3.610822453
vioscreen_glycitn
0.122301379
vioscreen_grams
3118.39863
vioscreen_hei2010_dairy
2.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.4
vioscreen_hei_score
81.4
vioscreen_hei_sodium
0.4
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.118411046
vioscreen_inositol
0.24953421
vioscreen_iron
17.10525872
vioscreen_isoleuc
3.332219205
vioscreen_isomalt
0.0
vioscreen_joules
7599.699315000001
vioscreen_juice_servings
1.08266
vioscreen_lactitol
0.0
vioscreen_lactose
2.321615977
vioscreen_legumes
0.16295890300000002
vioscreen_leucine
5.761807711
vioscreen_line_gi
475.0721318
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
7911.094520999999
vioscreen_lycopene
5223.558219
vioscreen_lysine
4.945506808999999
vioscreen_m_egg
0.125123283
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.006164384
vioscreen_m_meat
1.823808226
vioscreen_m_mpf
4.211506716000001
vioscreen_m_nutsd
2.212712369
vioscreen_m_organ
0.0
vioscreen_m_poult
1.197945205
vioscreen_m_soy
0.15841095800000002
vioscreen_magnes
377.9763271
vioscreen_maltitol
0.0
vioscreen_maltose
3.590246415
vioscreen_mangan
6.910631154
vioscreen_mannitol
0.254027359
vioscreen_methhis3
17.28386532
vioscreen_methion
1.656109703
vioscreen_mfa141
0.09863013699999999
vioscreen_mfa161
0.8484109120000001
vioscreen_mfa181
28.65199861
vioscreen_mfa201
0.45383564200000004
vioscreen_mfa221
0.132054797
vioscreen_mfatot
30.40832352
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
12.45649213
vioscreen_nccglbr
156.9705051
vioscreen_nccglgr
109.81597820000002
vioscreen_niacin
24.83148545
vioscreen_niacineq
38.83874411
vioscreen_nitrogen
13.32876579
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.810301062
vioscreen_oxalic
303.0371789
vioscreen_oxalicm
331.860381
vioscreen_pantothe
4.983671005
vioscreen_pectins
4.557809156
vioscreen_pfa182
14.72602472
vioscreen_pfa183
1.414547939
vioscreen_pfa184
0.029808219
vioscreen_pfa204
0.100136995
vioscreen_pfa205
0.103123286
vioscreen_pfa225
0.053506846
vioscreen_pfa226
0.210849292
vioscreen_pfatot
16.72186162
vioscreen_phenylal
3.4076436080000003
vioscreen_phosphor
1247.956764
vioscreen_phytic
993.3039384
vioscreen_pinitol
0.01690411
vioscreen_potass
3172.981507
vioscreen_procdate
10/28/15
vioscreen_proline
4.658822506
vioscreen_protanim
41.65186216
vioscreen_protein
81.03146939
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.38164329999999
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
793.0
vioscreen_retinol
201.0704195
vioscreen_rgrain
3.388603315
vioscreen_ribofla
1.622848887
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.27847
vioscreen_satoco
0.048821917
vioscreen_selenium
133.1542808
vioscreen_serine
3.575150498
vioscreen_sfa100
0.282465791
vioscreen_sfa120
0.679452097
vioscreen_sfa140
1.375534267
vioscreen_sfa160
10.56923628
vioscreen_sfa170
0.09002738800000001
vioscreen_sfa180
4.405780447
vioscreen_sfa200
0.254712311
vioscreen_sfa220
0.381589038
vioscreen_sfa40
0.242137
vioscreen_sfa60
0.140821922
vioscreen_sfa80
0.144136978
vioscreen_sfatot
18.93512013
vioscreen_sodium
3546.17363
vioscreen_sorbitol
0.793780768
vioscreen_srvid
14148.0
vioscreen_starch
91.31583904
vioscreen_started
10/9/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.021452055
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.64315069
vioscreen_sweet_servings
0.61927
vioscreen_tagatose
0.864602787
vioscreen_tfa161t
0.04424658
vioscreen_tfa181t
1.365397331
vioscreen_tfa182t
0.28383563300000003
vioscreen_tgrain
6.8322472979999995
vioscreen_thiamin
1.649205372
vioscreen_threonin
2.893178443
vioscreen_time
26.0
vioscreen_totaltfa
1.752986375
vioscreen_totcla
0.056191792000000004
vioscreen_totfolat
516.7976884
vioscreen_totsugar
89.50046019
vioscreen_tryptoph
0.8408220679999999
vioscreen_tyrosine
2.538109683
vioscreen_user_id
14148.0
vioscreen_v_drkgr
0.8185204909999999
vioscreen_v_orange
0.329369866
vioscreen_v_other
1.140657524
vioscreen_v_potato
0.13799999699999999
vioscreen_v_starcy
0.138739735
vioscreen_v_tomato
0.226273963
vioscreen_v_total
2.791643535
vioscreen_valine
3.7799456869999997
vioscreen_veg5_day
4.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.6
vioscreen_visit
1.0
vioscreen_vita_iu
16517.08356
vioscreen_vita_rae
993.4050514
vioscreen_vita_re
1785.7402399999999
vioscreen_vitb12
3.7573419439999998
vioscreen_vitb6
2.074246174
vioscreen_vitc
159.9900685
vioscreen_vitd
6.092602874
vioscreen_vitd2
0.000520548
vioscreen_vitd3
6.092081817
vioscreen_vitd_iu
243.7041149
vioscreen_vite_iu
18.62060279
vioscreen_vitk
370.0559503
vioscreen_water
2743.4553079999996
vioscreen_weight
Not provided
vioscreen_wgrain
3.443644317
vioscreen_whole_grain_servings
3.17047
vioscreen_xylitol
0.036136993
vioscreen_zinc
12.61457219
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)