mongolian-gerbil-gastric-tissue
stomach metagenome
Diet: Iron_deplete; Strain: cagAko; Time post infection: 6 weeks
chimera_check
Uchime
collection_date
2010-09-17
description
Diet: Iron_deplete; Strain: cagAko; Time post infection: 6 weeks
env_biome
Meriones unguiculatus-stomach
env_feature
Gastric-bacteria
env_material
Gastric-tissue
experimental_factor
Impact of Helicobacter pylori and iron diet on gastric microbiota
geo_loc_name
USA: Nashville, TN
lat_lon
36.1397 N 86.8016 W
lib_const_meth
amplicon
lib_size
22699
nucl_acid_amp
http://aem.asm.org/content/79/17/5112.long
nucl_acid_ext
MoBio PowerMag Soil DNA Isolation Kit
organism
stomach metagenome
pcr_cond
http://aem.asm.org/content/79/17/5112.long
project_name
Strain-specific modification of the gastric mucosal microbiota by an oncogenic constituent of Helicobacter pylori
samp_store_temp
-20
sample_title
mongolian-gerbil-gastric-tissue
seq_methods
illumina
sfffile_id_R1
3661-RMP-178_S178_R1_001.fastq
sfffile_id_R2
3661-RMP-178_S178_R2_001.fastq
target_gene
16S rRNA
target_subfragment
V4
host
Meriones unguiculatus
BioSampleModel
Metagenome or environmental