American Gut Project; 10317.000029452
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634043
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:15Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029452
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
32.0
age_corrected
32.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29452
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1983.0
bmi
23.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-13
collection month
July
collection season
Summer
collection time
09:45
collection_timestamp
2015-07-13 09:45
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
6.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
158.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
798aed69b2df6117bf8cfc2f7269bc16df0a22ad14f65b56a09283d3b8670f6ec383126604b2e0a541ba7de75f23239951ba367eae8b2076375953f26937a94e
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029452
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
4ca4e26d10759d52
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052520548
vioscreen_a_cal
6.373205399
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.907068707
vioscreen_addsugar
13.8980549
vioscreen_adsugtot
12.94364432
vioscreen_age
215.0
vioscreen_alanine
3.51326018
vioscreen_alcohol
0.79663019
vioscreen_alcohol_servings
0.052520000000000004
vioscreen_alphacar
1126.782705
vioscreen_alphtoce
18.75942717
vioscreen_alphtoco
17.85841048
vioscreen_arginine
4.064081896999999
vioscreen_ash
22.34468509
vioscreen_aspartam
0.0
vioscreen_aspartic
6.854685493
vioscreen_avcarb
82.03242723
vioscreen_bcodeid
Not provided
vioscreen_betacar
23813.61644
vioscreen_betacryp
251.3911387
vioscreen_betaine
160.6908604
vioscreen_betatoco
0.282356158
vioscreen_biochana
0.005424658000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
213.5587329
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.08016000000000001
vioscreen_calcium_servings
2.12323
vioscreen_calories
1617.6123289999998
vioscreen_carbo
110.7930972
vioscreen_cholest
384.40826200000004
vioscreen_choline
457.0307791
vioscreen_clac9t11
0.16580821
vioscreen_clat10c12
0.033178084
vioscreen_copper
1.78583583
vioscreen_coumest
0.133945214
vioscreen_cystine
0.826575292
vioscreen_d_cheese
0.035808217999999996
vioscreen_d_milk
0.044356165999999995
vioscreen_d_tot_soym
0.08016437900000001
vioscreen_d_total
0.08016437900000001
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.970164845
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.742465586
vioscreen_discfat_oil
43.99847228
vioscreen_discfat_sol
40.52567155
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001479452
vioscreen_f_citmlb
0.563260306
vioscreen_f_nj_citmlb
0.542575366
vioscreen_f_nj_other
0.982821948
vioscreen_f_nj_total
1.5253973140000001
vioscreen_f_other
0.982821948
vioscreen_f_total
1.546109636
vioscreen_fat
107.71284250000001
vioscreen_fiber
28.76197025
vioscreen_fibh2o
7.72504147
vioscreen_fibinso
21.06569991
vioscreen_finished
7/13/15
vioscreen_fish_servings
7.0103800000000005
vioscreen_fol_deqv
525.6875
vioscreen_fol_nat
520.4801798000001
vioscreen_fol_syn
3.062548159
vioscreen_formontn
0.002109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
17.2499184
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.24739724800000001
vioscreen_g_total
1.3045205309999999
vioscreen_g_whl
1.057123304
vioscreen_galactos
0.167452041
vioscreen_gammtoco
7.702902932000001
vioscreen_gender
false
vioscreen_genistn
2.657315356
vioscreen_glac
31.08114833
vioscreen_gltc
36.10594232
vioscreen_glucose
16.60263003
vioscreen_glutamic
10.2991231
vioscreen_glycine
2.954164772
vioscreen_glycitn
0.512109626
vioscreen_grams
4097.789384000001
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
6.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.2
vioscreen_height
Not provided
vioscreen_histidin
1.676739753
vioscreen_inositol
0.104849316
vioscreen_iron
11.48276434
vioscreen_isoleuc
2.852986208
vioscreen_isomalt
0.0
vioscreen_joules
6768.086301
vioscreen_juice_servings
0.0414
vioscreen_lactitol
0.0
vioscreen_lactose
0.599671246
vioscreen_legumes
0.073397263
vioscreen_leucine
4.809068319
vioscreen_line_gi
200.1274187
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
28807.02192
vioscreen_lycopene
1387.792808
vioscreen_lysine
4.730740315
vioscreen_m_egg
1.004904049
vioscreen_m_fish_hi
3.506849315
vioscreen_m_fish_lo
0.488027411
vioscreen_m_frank
0.147835614
vioscreen_m_meat
0.16983561100000003
vioscreen_m_mpf
4.7555343
vioscreen_m_nutsd
0.87076717
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.285068502
vioscreen_m_soy
0.091315063
vioscreen_magnes
378.1880565
vioscreen_maltitol
0.0
vioscreen_maltose
2.084273999
vioscreen_mangan
4.202383548
vioscreen_mannitol
0.17800002399999998
vioscreen_methhis3
15.45438249
vioscreen_methion
1.527287731
vioscreen_mfa141
0.013013698999999998
vioscreen_mfa161
1.831096158
vioscreen_mfa181
43.93274026
vioscreen_mfa201
0.909177848
vioscreen_mfa221
0.673780802
vioscreen_mfatot
47.50806935
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
17.85841048
vioscreen_nccglbr
62.76005458
vioscreen_nccglgr
43.89884953
vioscreen_niacin
19.66868445
vioscreen_niacineq
32.53755619
vioscreen_nitrogen
10.84062834
vioscreen_non_fried_fish_servings
7.0103800000000005
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.1240822989999995
vioscreen_oxalic
918.6940068
vioscreen_oxalicm
936.5148972999999
vioscreen_pantothe
6.2933700770000005
vioscreen_pectins
6.152137735
vioscreen_pfa182
15.53389073
vioscreen_pfa183
2.391479158
vioscreen_pfa184
0.147561646
vioscreen_pfa204
0.190438341
vioscreen_pfa205
0.45958908299999995
vioscreen_pfa225
0.17405479100000001
vioscreen_pfa226
0.952082302
vioscreen_pfatot
20.01948175
vioscreen_phenylal
2.7557259339999995
vioscreen_phosphor
1009.1595890000001
vioscreen_phytic
455.2827483
vioscreen_pinitol
0.014219178
vioscreen_potass
3672.533904
vioscreen_procdate
10/28/15
vioscreen_proline
2.770794427
vioscreen_protanim
42.50526541
vioscreen_protein
66.86862693
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.36528521
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
303.0
vioscreen_retinol
682.5906677999999
vioscreen_rgrain
0.32528768
vioscreen_ribofla
1.8242742669999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.47663
vioscreen_satoco
0.0
vioscreen_selenium
87.56204516
vioscreen_serine
2.965698577
vioscreen_sfa100
0.8459452590000001
vioscreen_sfa120
0.896904096
vioscreen_sfa140
2.9687670560000003
vioscreen_sfa160
17.86671126
vioscreen_sfa170
0.231479488
vioscreen_sfa180
6.681563035
vioscreen_sfa200
0.286164354
vioscreen_sfa220
0.23490410399999997
vioscreen_sfa40
1.068383622
vioscreen_sfa60
0.660219166
vioscreen_sfa80
0.39969862799999994
vioscreen_sfatot
32.31756207
vioscreen_sodium
3422.6551369999997
vioscreen_sorbitol
0.7418903509999999
vioscreen_srvid
20128.0
vioscreen_starch
20.20172838
vioscreen_started
7/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.01186189
vioscreen_sweet_servings
0.08327000000000001
vioscreen_tagatose
0.37213699100000003
vioscreen_tfa161t
0.022136989
vioscreen_tfa181t
1.5924384969999998
vioscreen_tfa182t
0.32000002899999996
vioscreen_tgrain
1.2731781420000001
vioscreen_thiamin
0.947863268
vioscreen_threonin
2.69142431
vioscreen_time
22.0
vioscreen_totaltfa
1.984684858
vioscreen_totcla
0.19975345600000002
vioscreen_totfolat
523.5426798000001
vioscreen_totsugar
50.57973031
vioscreen_tryptoph
0.77260274
vioscreen_tyrosine
2.190739545
vioscreen_user_id
20128.0
vioscreen_v_drkgr
2.339123201
vioscreen_v_orange
0.441424686
vioscreen_v_other
2.335177989
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.006849315
vioscreen_v_tomato
0.235589035
vioscreen_v_total
5.358163996
vioscreen_valine
3.2342472439999996
vioscreen_veg5_day
11.7
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
10.7
vioscreen_visit
1.0
vioscreen_vita_iu
43112.96712
vioscreen_vita_rae
2724.486473
vioscreen_vita_re
4766.376027
vioscreen_vitb12
7.182411172999999
vioscreen_vitb6
1.9763287269999998
vioscreen_vitc
185.05580049999998
vioscreen_vitd
17.24772314
vioscreen_vitd2
0.0
vioscreen_vitd3
17.24772314
vioscreen_vitd_iu
689.9089255
vioscreen_vite_iu
26.63038581
vioscreen_vitk
1207.639897
vioscreen_water
3799.9989729999998
vioscreen_weight
Not provided
vioscreen_wgrain
0.947890441
vioscreen_whole_grain_servings
1.05712
vioscreen_xylitol
0.047917813
vioscreen_zinc
6.504575797
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
59.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)