American Gut Project; 10317.000030034
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634096
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:19Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030034
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030034
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
28.98
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Not provided
collection date
09/08/2015
collection month
September
collection season
Fall
collection time
19:00
collection_timestamp
2015-09-08 19:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
Germany
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
Germany
gluten
No
has_physical_specimen
true
height cm
163.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b64c4365899ab602f32ede1092ee094f8c1a231012e88a8d82cdec2369522441a1cd9e454a36e7b00cf9c756ab218ae6b67658b8580b8c25bdde2702a7b0d366
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
Diagnosed by a medical professional (doctor, physician assistant)
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
Not provided
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030034
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
d5ebd0954ff481bd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.446356285
vioscreen_addsugar
28.01663099
vioscreen_adsugtot
24.38901434
vioscreen_age
215.0
vioscreen_alanine
3.3572870960000003
vioscreen_alcohol
0.005232877
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
3883.745548
vioscreen_alphtoce
13.00835563
vioscreen_alphtoco
11.93810868
vioscreen_arginine
4.164822011
vioscreen_ash
17.84515063
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
6.942273116
vioscreen_avcarb
98.83395762
vioscreen_bcodeid
Not provided
vioscreen_betacar
13457.84932
vioscreen_betacryp
138.8426905
vioscreen_betaine
53.40277718
vioscreen_betatoco
0.306356164
vioscreen_biochana
0.014465753999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
138.404024
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.81877
vioscreen_calcium_servings
2.3532900000000003
vioscreen_calories
1462.510616
vioscreen_carbo
121.4588827
vioscreen_cholest
853.5269691999999
vioscreen_choline
780.0065925
vioscreen_clac9t11
0.082082189
vioscreen_clat10c12
0.01619178
vioscreen_copper
1.258547848
vioscreen_coumest
0.002219178
vioscreen_cystine
1.070739662
vioscreen_d_cheese
0.46736985299999995
vioscreen_d_milk
0.351397287
vioscreen_d_tot_soym
0.818767056
vioscreen_d_total
0.818767056
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.066876717
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.798273959
vioscreen_discfat_oil
17.7198095
vioscreen_discfat_sol
39.64813784
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001150685
vioscreen_f_citmlb
1.231890367
vioscreen_f_nj_citmlb
1.224027367
vioscreen_f_nj_other
0.9686027629999999
vioscreen_f_nj_total
2.192602539
vioscreen_f_other
0.9686027629999999
vioscreen_f_total
2.200465539
vioscreen_fat
83.71339897
vioscreen_fiber
22.62323149
vioscreen_fibh2o
4.60219158
vioscreen_fibinso
18.08556159
vioscreen_finished
9/2/15
vioscreen_fish_servings
2.30365
vioscreen_fol_deqv
469.4536815
vioscreen_fol_nat
458.1737586
vioscreen_fol_syn
6.627041417
vioscreen_formontn
0.004219178
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.4
vioscreen_fructose
19.86674337
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.39287673700000003
vioscreen_g_total
0.6689863229999999
vioscreen_g_whl
0.276109586
vioscreen_galactos
0.167369874
vioscreen_gammtoco
9.281835938
vioscreen_gender
false
vioscreen_genistn
0.021890412
vioscreen_glac
36.89265839
vioscreen_gltc
42.83092894
vioscreen_glucose
20.94320687
vioscreen_glutamic
11.38764314
vioscreen_glycine
2.622164123
vioscreen_glycitn
0.002438356
vioscreen_grams
4277.346233
vioscreen_hei2010_dairy
4.3
vioscreen_hei2010_empty_calories
12.5
vioscreen_hei2010_fatty_acids
4.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.8
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.3
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.3
vioscreen_hei_sodium
0.7
vioscreen_hei_sol_fat_alc_add_sug
12.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
1.72506856
vioscreen_inositol
0.142383555
vioscreen_iron
9.116876472000001
vioscreen_isoleuc
3.171506782
vioscreen_isomalt
0.0
vioscreen_joules
6119.140411
vioscreen_juice_servings
0.01575
vioscreen_lactitol
0.0
vioscreen_lactose
6.225177922
vioscreen_legumes
0.06087671
vioscreen_leucine
5.265972482
vioscreen_line_gi
281.7865582
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5355.715411
vioscreen_lycopene
4979.134247
vioscreen_lysine
4.610547878
vioscreen_m_egg
4.012876578999999
vioscreen_m_fish_hi
1.069123318
vioscreen_m_fish_lo
0.24367124
vioscreen_m_frank
0.246356159
vioscreen_m_meat
0.175945209
vioscreen_m_mpf
2.000493131
vioscreen_m_nutsd
2.212493144
vioscreen_m_organ
0.0
vioscreen_m_poult
0.265397268
vioscreen_m_soy
0.001068493
vioscreen_magnes
285.8456122
vioscreen_maltitol
0.0
vioscreen_maltose
1.109862947
vioscreen_mangan
4.0035888669999995
vioscreen_mannitol
0.459205439
vioscreen_methhis3
6.6359455270000005
vioscreen_methion
1.65460272
vioscreen_mfa141
0.072876713
vioscreen_mfa161
1.57550701
vioscreen_mfa181
31.34271458
vioscreen_mfa201
0.476821858
vioscreen_mfa221
0.214328797
vioscreen_mfatot
33.82904003
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
11.93810868
vioscreen_nccglbr
67.47035531
vioscreen_nccglgr
47.19619007
vioscreen_niacin
12.83309477
vioscreen_niacineq
25.75909942
vioscreen_nitrogen
11.07298668
vioscreen_non_fried_fish_servings
1.87615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.645561824
vioscreen_oxalic
297.42703339999997
vioscreen_oxalicm
284.1161173
vioscreen_pantothe
6.198410076
vioscreen_pectins
5.47463011
vioscreen_pfa182
12.16167193
vioscreen_pfa183
0.9991506920000001
vioscreen_pfa184
0.048438357
vioscreen_pfa204
0.352246554
vioscreen_pfa205
0.160876705
vioscreen_pfa225
0.059342465
vioscreen_pfa226
0.378410946
vioscreen_pfatot
14.23484857
vioscreen_phenylal
3.17156163
vioscreen_phosphor
1133.421575
vioscreen_phytic
400.30637839999997
vioscreen_pinitol
0.0000822
vioscreen_potass
2898.8171230000003
vioscreen_procdate
10/28/15
vioscreen_proline
3.367945005
vioscreen_protanim
48.50013378
vioscreen_protein
67.99277076
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.49246442
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
128.0
vioscreen_retinol
537.6081336
vioscreen_rgrain
0.37178081399999996
vioscreen_ribofla
2.035753391
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.36562
vioscreen_satoco
0.0
vioscreen_selenium
113.2223994
vioscreen_serine
3.880986462
vioscreen_sfa100
0.462657521
vioscreen_sfa120
0.611506841
vioscreen_sfa140
2.122465954
vioscreen_sfa160
15.73158845
vioscreen_sfa170
0.103123286
vioscreen_sfa180
6.251178564
vioscreen_sfa200
0.20917809899999998
vioscreen_sfa220
0.366438356
vioscreen_sfa40
0.5427397429999999
vioscreen_sfa60
0.305479452
vioscreen_sfa80
0.21586301600000002
vioscreen_sfatot
27.30745398
vioscreen_sodium
2817.773973
vioscreen_sorbitol
0.498931467
vioscreen_srvid
20594.0
vioscreen_starch
12.92060413
vioscreen_started
9/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
25.07287564
vioscreen_sweet_servings
0.80166
vioscreen_tagatose
1.121150772
vioscreen_tfa161t
0.044986302
vioscreen_tfa181t
1.72383565
vioscreen_tfa182t
0.293561648
vioscreen_tgrain
0.5874794320000001
vioscreen_thiamin
0.848684818
vioscreen_threonin
2.859671313
vioscreen_time
22.0
vioscreen_totaltfa
2.100520387
vioscreen_totcla
0.09964384300000001
vioscreen_totfolat
464.8007277
vioscreen_totsugar
74.61386986
vioscreen_tryptoph
0.7768219409999999
vioscreen_tyrosine
2.46260284
vioscreen_user_id
20594.0
vioscreen_v_drkgr
1.060219208
vioscreen_v_orange
0.662137008
vioscreen_v_other
1.704273966
vioscreen_v_potato
0.020383562
vioscreen_v_starcy
0.011287671
vioscreen_v_tomato
0.499917812
vioscreen_v_total
3.9581920889999997
vioscreen_valine
3.6018909189999997
vioscreen_veg5_day
12.1
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
7.9
vioscreen_visit
1.0
vioscreen_vita_iu
27575.58904
vioscreen_vita_rae
1826.7037670000002
vioscreen_vita_re
3115.7993149999998
vioscreen_vitb12
4.811808045
vioscreen_vitb6
1.599342325
vioscreen_vitc
143.152119
vioscreen_vitd
10.64260154
vioscreen_vitd2
0.0
vioscreen_vitd3
10.64260154
vioscreen_vitd_iu
425.7040614
vioscreen_vite_iu
17.82572506
vioscreen_vitk
242.06922090000003
vioscreen_water
4012.841096
vioscreen_weight
Not provided
vioscreen_wgrain
0.215698639
vioscreen_whole_grain_servings
0.27610999999999997
vioscreen_xylitol
0.061808218
vioscreen_zinc
8.266657748
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
77.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)