American Gut Project; 10317.000029322
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633688
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:03Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029322
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29322
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
36.58
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
true
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-26
collection month
June
collection season
Summer
collection time
10:00
collection_timestamp
2015-06-26 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
Ireland
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
133.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
36ad88c4c9fc6620a97f3d74bbf09ecfe58be58bef4f2742fd364de2c3f4a5b59b2a144e8ae5045f56a854d35a950c39b4190251590aa00a3f7710219ab71309
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Not provided
latitude
52.4
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-1.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029322
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
30b51b96588611dc
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.14405501
vioscreen_addsugar
58.47454516
vioscreen_adsugtot
52.13866117
vioscreen_age
215.0
vioscreen_alanine
2.749588807
vioscreen_alcohol
0.028575343
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
3168.284589
vioscreen_alphtoce
10.8132866
vioscreen_alphtoco
9.537314721
vioscreen_arginine
3.270739579
vioscreen_ash
17.59156143
vioscreen_aspartam
0.0
vioscreen_aspartic
6.082630565
vioscreen_avcarb
191.68105740000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
11467.39863
vioscreen_betacryp
419.490625
vioscreen_betaine
58.31383776
vioscreen_betatoco
0.281835645
vioscreen_biochana
0.032794519
vioscreen_bmi
Not provided
vioscreen_caffeine
125.68807790000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.85195
vioscreen_calcium_servings
2.17088
vioscreen_calories
1631.157534
vioscreen_carbo
216.16958480000002
vioscreen_cholest
165.673994
vioscreen_choline
263.675899
vioscreen_clac9t11
0.12230138900000001
vioscreen_clat10c12
0.024328767
vioscreen_copper
1.4400002680000001
vioscreen_coumest
0.0030136990000000003
vioscreen_cystine
0.736109569
vioscreen_d_cheese
0.17586302
vioscreen_d_milk
0.668904093
vioscreen_d_tot_soym
0.851945266
vioscreen_d_total
0.851945266
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.128739731
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.852547925
vioscreen_discfat_oil
25.5401113
vioscreen_discfat_sol
28.96134418
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000986301
vioscreen_f_citmlb
0.500219225
vioscreen_f_nj_citmlb
0.49736988600000004
vioscreen_f_nj_other
0.929177982
vioscreen_f_nj_total
1.426547952
vioscreen_f_other
0.929177982
vioscreen_f_total
1.4293972069999998
vioscreen_fat
64.73989191
vioscreen_fiber
24.31671126
vioscreen_fibh2o
6.764162832
vioscreen_fibinso
17.66139368
vioscreen_finished
6/22/15
vioscreen_fish_servings
0.6459600000000001
vioscreen_fol_deqv
372.6038099
vioscreen_fol_nat
282.2966182
vioscreen_fol_syn
53.06921019
vioscreen_formontn
0.003671233
vioscreen_fried_fish_servings
0.39712
vioscreen_fried_food_servings
0.2137
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.9
vioscreen_fructose
18.24284835
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.340328687
vioscreen_g_total
2.611616579
vioscreen_g_whl
0.271287662
vioscreen_galactos
0.161452077
vioscreen_gammtoco
9.469396805
vioscreen_gender
false
vioscreen_genistn
0.18482193600000002
vioscreen_glac
97.48992937
vioscreen_gltc
107.0499144
vioscreen_glucose
19.80482261
vioscreen_glutamic
10.70178122
vioscreen_glycine
2.40597275
vioscreen_glycitn
0.039616436
vioscreen_grams
2562.0941780000003
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
15.2
vioscreen_hei2010_fatty_acids
2.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.9
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
61.1
vioscreen_hei2010_sea_foods_plant_protiens
3.9
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
9.7
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.8
vioscreen_hei_score
65.5
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.6
vioscreen_height
Not provided
vioscreen_histidin
1.542356225
vioscreen_inositol
0.053232872
vioscreen_iron
10.12726081
vioscreen_isoleuc
2.609945386
vioscreen_isomalt
0.0
vioscreen_joules
6824.763014
vioscreen_juice_servings
0.0057
vioscreen_lactitol
0.0
vioscreen_lactose
9.401260836
vioscreen_legumes
0.028630136
vioscreen_leucine
4.189753786
vioscreen_line_gi
476.7413098999999
vioscreen_low_fat_dairy_serving
0.16488
vioscreen_lutzeax
6485.00137
vioscreen_lycopene
12319.45342
vioscreen_lysine
3.990822319
vioscreen_m_egg
0.190410959
vioscreen_m_fish_hi
0.035452054
vioscreen_m_fish_lo
0.332630147
vioscreen_m_frank
0.012301369
vioscreen_m_meat
0.789616415
vioscreen_m_mpf
3.121095757
vioscreen_m_nutsd
0.533315079
vioscreen_m_organ
0.0
vioscreen_m_poult
1.951123381
vioscreen_m_soy
0.0066301369999999995
vioscreen_magnes
266.271875
vioscreen_maltitol
0.0
vioscreen_maltose
3.5072054930000003
vioscreen_mangan
3.518356365
vioscreen_mannitol
0.579671196
vioscreen_methhis3
12.5275618
vioscreen_methion
1.266602733
vioscreen_mfa141
0.049315074
vioscreen_mfa161
1.031972556
vioscreen_mfa181
20.18988923
vioscreen_mfa201
0.210657553
vioscreen_mfa221
0.013863015
vioscreen_mfatot
21.81701225
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.374109723
vioscreen_nccglbr
158.1436644
vioscreen_nccglgr
110.62810359999999
vioscreen_niacin
17.62794574
vioscreen_niacineq
28.596765299999998
vioscreen_nitrogen
9.344960001
vioscreen_non_fried_fish_servings
0.24885
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.47509565
vioscreen_oxalic
236.6871575
vioscreen_oxalicm
225.3922517
vioscreen_pantothe
4.256903829
vioscreen_pectins
5.6207399129999995
vioscreen_pfa182
11.78914945
vioscreen_pfa183
1.39372592
vioscreen_pfa184
0.001534247
vioscreen_pfa204
0.109643837
vioscreen_pfa205
0.014246575
vioscreen_pfa225
0.018821917
vioscreen_pfa226
0.047479457
vioscreen_pfatot
13.44832647
vioscreen_phenylal
2.445342432
vioscreen_phosphor
914.7363014
vioscreen_phytic
460.3940496999999
vioscreen_pinitol
0.002547945
vioscreen_potass
3322.460959
vioscreen_procdate
10/28/15
vioscreen_proline
3.23134264
vioscreen_protanim
35.97432845
vioscreen_protein
57.831009200000004
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.85813758
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
379.0
vioscreen_retinol
275.833155
vioscreen_rgrain
2.093315062
vioscreen_ribofla
1.31243838
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.43841
vioscreen_satoco
0.36263013899999996
vioscreen_selenium
65.47660531
vioscreen_serine
2.496191741
vioscreen_sfa100
0.514575321
vioscreen_sfa120
0.701753465
vioscreen_sfa140
2.040821817
vioscreen_sfa160
12.51832861
vioscreen_sfa170
0.09556164699999999
vioscreen_sfa180
6.512766882
vioscreen_sfa200
0.132465781
vioscreen_sfa220
0.10095891
vioscreen_sfa40
0.6373150129999999
vioscreen_sfa60
0.336630165
vioscreen_sfa80
0.243315062
vioscreen_sfatot
24.06290133
vioscreen_sodium
3390.4352740000004
vioscreen_sorbitol
1.0651781059999998
vioscreen_srvid
19942.0
vioscreen_starch
69.98119114
vioscreen_started
6/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
50.83652076
vioscreen_sweet_servings
1.7835599999999998
vioscreen_tagatose
5.140082205
vioscreen_tfa161t
0.03969863
vioscreen_tfa181t
1.344657334
vioscreen_tfa182t
0.534739706
vioscreen_tgrain
2.353643715
vioscreen_thiamin
1.099123268
vioscreen_threonin
2.3027123019999998
vioscreen_time
23.0
vioscreen_totaltfa
1.9564931369999998
vioscreen_totcla
0.147671248
vioscreen_totfolat
335.365839
vioscreen_totsugar
101.8357877
vioscreen_tryptoph
0.6584109370000001
vioscreen_tyrosine
1.9394519540000001
vioscreen_user_id
19942.0
vioscreen_v_drkgr
0.745342432
vioscreen_v_orange
0.545917793
vioscreen_v_other
1.203643799
vioscreen_v_potato
1.36997271
vioscreen_v_starcy
0.058575345
vioscreen_v_tomato
0.965013645
vioscreen_v_total
4.888438102
vioscreen_valine
2.9096161310000004
vioscreen_veg5_day
8.3
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
9.8
vioscreen_visit
1.0
vioscreen_vita_iu
23021.21644
vioscreen_vita_rae
1380.941182
vioscreen_vita_re
2486.048288
vioscreen_vitb12
2.570657641
vioscreen_vitb6
2.026000475
vioscreen_vitc
239.29711040000004
vioscreen_vitd
2.669780909
vioscreen_vitd2
0.391041084
vioscreen_vitd3
2.278794715
vioscreen_vitd_iu
106.7912364
vioscreen_vite_iu
14.34934182
vioscreen_vitk
346.8685788
vioscreen_water
2241.8207190000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.260301355
vioscreen_whole_grain_servings
0.27129000000000003
vioscreen_xylitol
0.025589044
vioscreen_zinc
7.950904324
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
90.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)