American Gut Project; 10317.000026632
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633886
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:06Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026632
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
20s
age years
26.0
age_corrected
26.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26632
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1989.0
bmi
23.43
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/11/2015
collection month
July
collection season
Summer
collection time
08:30
collection_timestamp
2015-07-11 08:30
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
New England
elevation
29.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
5fc22051124a157f4c5d94fc6d495269224db8e70cbf4aad8dc3c9d7c6ce531c5790bc1cb6c8faa6e67c5ceea4c7b0dd903df6dabd53a51ca7bf157cafbcf784
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
42.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-71.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000026632
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
81ca0309611bfb26
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.462767217
vioscreen_a_cal
195.2902397
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.325533765
vioscreen_addsugar
40.30123074
vioscreen_adsugtot
34.38912404
vioscreen_age
215.0
vioscreen_alanine
3.0184660610000003
vioscreen_alcohol
21.02117669
vioscreen_alcohol_servings
1.4627700000000001
vioscreen_alphacar
6600.759589
vioscreen_alphtoce
31.18495559
vioscreen_alphtoco
25.26914865
vioscreen_arginine
4.250356847
vioscreen_ash
27.46687447
vioscreen_aspartam
0.0
vioscreen_aspartic
6.92471372
vioscreen_avcarb
244.2851884
vioscreen_bcodeid
Not provided
vioscreen_betacar
29717.904110000003
vioscreen_betacryp
221.5761986
vioscreen_betaine
155.3075021
vioscreen_betatoco
0.775616539
vioscreen_biochana
0.018684933
vioscreen_bmi
Not provided
vioscreen_caffeine
134.37641269999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.65951
vioscreen_calcium_servings
3.7103
vioscreen_calories
2401.5193489999997
vioscreen_carbo
291.1445848
vioscreen_cholest
82.97115261
vioscreen_choline
314.7905608
vioscreen_clac9t11
0.037150689
vioscreen_clat10c12
0.009698629
vioscreen_copper
2.303150417
vioscreen_coumest
0.178027386
vioscreen_cystine
0.9460273640000001
vioscreen_d_cheese
0.478876736
vioscreen_d_milk
0.168849318
vioscreen_d_tot_soym
0.851397203
vioscreen_d_total
0.6595067689999999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
16.87306694
vioscreen_database
NDSR - V44
vioscreen_delttoco
6.112821731
vioscreen_discfat_oil
65.32774508
vioscreen_discfat_sol
19.78835483
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0013150689999999999
vioscreen_f_citmlb
1.522191714
vioscreen_f_nj_citmlb
1.516712262
vioscreen_f_nj_other
1.355013745
vioscreen_f_nj_total
2.871726175
vioscreen_f_other
1.355013745
vioscreen_f_total
2.877205627
vioscreen_fat
103.8625428
vioscreen_fiber
46.59195741
vioscreen_fibh2o
12.16553403
vioscreen_fibinso
34.43381047
vioscreen_finished
6/15/15
vioscreen_fish_servings
0.46808
vioscreen_fol_deqv
850.7793663999998
vioscreen_fol_nat
584.0815067999999
vioscreen_fol_syn
156.831539
vioscreen_formontn
0.0020273970000000002
vioscreen_fried_fish_servings
0.21385
vioscreen_fried_food_servings
0.11507
vioscreen_frt5_day
4.0
vioscreen_frtsumm
5.8
vioscreen_fructose
35.06427387
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
4.106055022
vioscreen_g_total
4.788630738999999
vioscreen_g_whl
0.6825479170000001
vioscreen_galactos
0.227369794
vioscreen_gammtoco
19.4019665
vioscreen_gender
false
vioscreen_genistn
24.35988335
vioscreen_glac
98.61751926
vioscreen_gltc
111.320976
vioscreen_glucose
33.46057631
vioscreen_glutamic
13.77802601
vioscreen_glycine
2.71435597
vioscreen_glycitn
3.458711807
vioscreen_grams
4985.189041
vioscreen_hei2010_dairy
2.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
1.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
2.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.6
vioscreen_hei_score
73.5
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
19.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.9
vioscreen_height
Not provided
vioscreen_histidin
1.589068854
vioscreen_inositol
0.312712327
vioscreen_iron
19.19019291
vioscreen_isoleuc
2.768877087
vioscreen_isomalt
0.0
vioscreen_joules
10047.94932
vioscreen_juice_servings
0.01099
vioscreen_lactitol
0.0
vioscreen_lactose
1.233287738
vioscreen_legumes
0.167643832
vioscreen_leucine
4.703945045
vioscreen_line_gi
605.4441353
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19276.75479
vioscreen_lycopene
11205.45
vioscreen_lysine
3.4203278839999998
vioscreen_m_egg
0.17800000300000002
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.272904111
vioscreen_m_frank
0.080027395
vioscreen_m_meat
0.147780818
vioscreen_m_mpf
0.610465732
vioscreen_m_nutsd
1.190849325
vioscreen_m_organ
0.0
vioscreen_m_poult
0.10975342800000001
vioscreen_m_soy
1.4319725559999998
vioscreen_magnes
494.95047089999997
vioscreen_maltitol
0.0
vioscreen_maltose
3.653041056
vioscreen_mangan
6.575672223
vioscreen_mannitol
1.0775889779999999
vioscreen_methhis3
2.077945239
vioscreen_methion
1.013780651
vioscreen_mfa141
0.029205479
vioscreen_mfa161
0.949616398
vioscreen_mfa181
47.40722924
vioscreen_mfa201
0.46635612600000004
vioscreen_mfa221
0.019260273
vioscreen_mfatot
49.15296982
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
22.31953259
vioscreen_nccglbr
187.2491224
vioscreen_nccglgr
130.9832941
vioscreen_niacin
21.40125749
vioscreen_niacineq
34.86564105
vioscreen_nitrogen
11.40827403
vioscreen_non_fried_fish_servings
0.25423
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.171232542
vioscreen_oxalic
748.2277397
vioscreen_oxalicm
710.2000856000001
vioscreen_pantothe
6.417369435
vioscreen_pectins
9.975615368
vioscreen_pfa182
24.12340004
vioscreen_pfa183
3.131095824
vioscreen_pfa184
0.001041096
vioscreen_pfa204
0.030739727
vioscreen_pfa205
0.014767124
vioscreen_pfa225
0.003561644
vioscreen_pfa226
0.020986302000000002
vioscreen_pfatot
27.41925567
vioscreen_phenylal
3.0237803
vioscreen_phosphor
1307.846233
vioscreen_phytic
1351.87149
vioscreen_pinitol
0.117917811
vioscreen_potass
4578.646918
vioscreen_procdate
10/28/15
vioscreen_proline
4.061424109
vioscreen_protanim
11.94810841
vioscreen_protein
68.59120826
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
56.64426905
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
388.0
vioscreen_retinol
206.11581759999999
vioscreen_rgrain
3.73191821
vioscreen_ribofla
2.062958851
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.3754800000000005
vioscreen_satoco
6.553863442000001
vioscreen_selenium
89.32539063
vioscreen_serine
3.14315035
vioscreen_sfa100
0.19986302600000003
vioscreen_sfa120
0.681644053
vioscreen_sfa140
1.027780862
vioscreen_sfa160
12.5833971
vioscreen_sfa170
0.071205495
vioscreen_sfa180
4.295808473
vioscreen_sfa200
0.345863029
vioscreen_sfa220
0.324904079
vioscreen_sfa40
0.22482195300000002
vioscreen_sfa60
0.098328765
vioscreen_sfa80
0.11194521800000001
vioscreen_sfatot
20.24027585
vioscreen_sodium
4566.053767
vioscreen_sorbitol
0.986438323
vioscreen_srvid
18911.0
vioscreen_starch
93.81289598
vioscreen_started
6/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.18109482
vioscreen_sweet_servings
0.26114
vioscreen_tagatose
0.276739711
vioscreen_tfa161t
0.019753425
vioscreen_tfa181t
0.971671243
vioscreen_tfa182t
0.287698636
vioscreen_tgrain
5.473698697000001
vioscreen_thiamin
1.863479405
vioscreen_threonin
2.567644177
vioscreen_time
25.0
vioscreen_totaltfa
1.284931172
vioscreen_totcla
0.048191792000000004
vioscreen_totfolat
740.9124144
vioscreen_totsugar
106.61757279999999
vioscreen_tryptoph
0.811177962
vioscreen_tyrosine
2.15841031
vioscreen_user_id
18911.0
vioscreen_v_drkgr
1.781232776
vioscreen_v_orange
1.2690137890000002
vioscreen_v_other
3.6202743739999996
vioscreen_v_potato
0.33145204300000003
vioscreen_v_starcy
0.117479445
vioscreen_v_tomato
0.7387396829999999
vioscreen_v_total
7.858546929
vioscreen_valine
3.1066299230000003
vioscreen_veg5_day
12.8
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
15.7
vioscreen_visit
1.0
vioscreen_vita_iu
55902.789039999996
vioscreen_vita_rae
2966.8753420000003
vioscreen_vita_re
5727.629795000001
vioscreen_vitb12
2.429616933
vioscreen_vitb6
3.075780247
vioscreen_vitc
309.686494
vioscreen_vitd
2.027726014
vioscreen_vitd2
0.71063015
vioscreen_vitd3
1.3171781359999999
vioscreen_vitd_iu
81.10904056
vioscreen_vite_iu
39.84904217
vioscreen_vitk
892.7369863
vioscreen_water
4496.72774
vioscreen_weight
Not provided
vioscreen_wgrain
1.741725974
vioscreen_whole_grain_servings
0.68255
vioscreen_xylitol
0.122876687
vioscreen_zinc
10.43564453
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily