American Gut Project; 10317.000031479
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634324
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031479
acid_reflux
Not provided
acne medication
Not provided
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031479
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1963.0
bmi
29.57
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
08/01/2015
collection month
August
collection season
Summer
collection time
04:20
collection_timestamp
2015-08-01 04:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
210.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
923190801402a7903705e669f01efffbc88e63326850e30109351c8bf391f8a1b72486ed04c77064608973cefa844b62771b97532a13113046c0456267e5c85c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000031479
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NC
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
74347d194e516f93
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.4166028999999998
vioscreen_addsugar
11.28676691
vioscreen_adsugtot
9.060603061
vioscreen_age
215.0
vioscreen_alanine
7.769479077000001
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
100.4407427
vioscreen_alphtoce
13.52611034
vioscreen_alphtoco
12.698355900000001
vioscreen_arginine
8.768630271000001
vioscreen_ash
27.03073898
vioscreen_aspartam
0.0
vioscreen_aspartic
12.98085001
vioscreen_avcarb
34.07983198
vioscreen_bcodeid
Not provided
vioscreen_betacar
2277.2503420000003
vioscreen_betacryp
83.08791738
vioscreen_betaine
43.09235071
vioscreen_betatoco
0.253589034
vioscreen_biochana
0.004
vioscreen_bmi
Not provided
vioscreen_caffeine
236.6702483
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.20786
vioscreen_calcium_servings
1.2909899999999999
vioscreen_calories
2094.792637
vioscreen_carbo
47.933315500000006
vioscreen_cholest
714.3581336
vioscreen_choline
733.9576199
vioscreen_clac9t11
0.31235617
vioscreen_clat10c12
0.089178091
vioscreen_copper
1.138767107
vioscreen_coumest
0.177726035
vioscreen_cystine
1.676410832
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.065452053
vioscreen_d_tot_soym
0.20786300000000002
vioscreen_d_total
0.20786300000000002
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.202328763
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.335095967
vioscreen_discfat_oil
33.93441246
vioscreen_discfat_sol
61.72953232
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.027561642
vioscreen_f_nj_citmlb
0.0075890409999999995
vioscreen_f_nj_other
0.31638357100000003
vioscreen_f_nj_total
0.323972603
vioscreen_f_other
0.31638357100000003
vioscreen_f_total
0.34397261100000004
vioscreen_fat
153.75379919999997
vioscreen_fiber
13.85413768
vioscreen_fibh2o
5.171096091
vioscreen_fibinso
8.714466502999999
vioscreen_finished
7/31/15
vioscreen_fish_servings
6.65923
vioscreen_fol_deqv
274.528917
vioscreen_fol_nat
271.19980739999994
vioscreen_fol_syn
1.959808099
vioscreen_formontn
0.001945205
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.7
vioscreen_fructose
4.432273718
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.052438354000000006
vioscreen_g_total
0.052438354000000006
vioscreen_g_whl
0.0
vioscreen_galactos
0.23263012600000002
vioscreen_gammtoco
7.126794601
vioscreen_gender
false
vioscreen_genistn
0.08863013300000001
vioscreen_glac
2.9213699969999998
vioscreen_gltc
3.384766963
vioscreen_glucose
6.991178162000001
vioscreen_glutamic
20.836795000000002
vioscreen_glycine
7.26065724
vioscreen_glycitn
0.0
vioscreen_grams
3024.845205
vioscreen_hei2010_dairy
0.8
vioscreen_hei2010_empty_calories
14.4
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
1.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
53.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.9
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
2.6
vioscreen_hei_fruit
1.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.8
vioscreen_hei_non_juice_frt
1.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
46.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
14.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
4.074658203
vioscreen_inositol
0.011479452
vioscreen_iron
10.52290374
vioscreen_isoleuc
6.152137067000001
vioscreen_isomalt
0.0
vioscreen_joules
8764.615753
vioscreen_juice_servings
0.03995
vioscreen_lactitol
0.0
vioscreen_lactose
3.228849395
vioscreen_legumes
0.015726027
vioscreen_leucine
10.45353369
vioscreen_line_gi
27.11725974
vioscreen_low_fat_dairy_serving
0.14240999999999998
vioscreen_lutzeax
2993.411986
vioscreen_lycopene
2154.729452
vioscreen_lysine
10.83761705
vioscreen_m_egg
1.583999926
vioscreen_m_fish_hi
3.360082339
vioscreen_m_fish_lo
0.434712324
vioscreen_m_frank
3.173369943
vioscreen_m_meat
6.911397019
vioscreen_m_mpf
15.629315599999998
vioscreen_m_nutsd
1.860383501
vioscreen_m_organ
0.0
vioscreen_m_poult
1.7497533509999998
vioscreen_m_soy
0.000027399999999999995
vioscreen_magnes
276.3346747
vioscreen_maltitol
0.0
vioscreen_maltose
0.272849347
vioscreen_mangan
1.465150765
vioscreen_mannitol
0.138301358
vioscreen_methhis3
53.19701413
vioscreen_methion
3.451177895
vioscreen_mfa141
0.332136995
vioscreen_mfa161
4.206575743999999
vioscreen_mfa181
62.28684718
vioscreen_mfa201
1.120684898
vioscreen_mfa221
0.655506834
vioscreen_mfatot
68.92479131
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
12.698355900000001
vioscreen_nccglbr
21.83835884
vioscreen_nccglgr
15.27347897
vioscreen_niacin
34.89890304
vioscreen_niacineq
56.98563784
vioscreen_nitrogen
21.77364352
vioscreen_non_fried_fish_servings
6.65923
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.794246642
vioscreen_oxalic
110.6107663
vioscreen_oxalicm
142.303521
vioscreen_pantothe
7.756054688
vioscreen_pectins
2.917288166
vioscreen_pfa182
18.81953393
vioscreen_pfa183
2.0132325890000002
vioscreen_pfa184
0.14654795
vioscreen_pfa204
0.40424658399999996
vioscreen_pfa205
0.47202737899999997
vioscreen_pfa225
0.195260265
vioscreen_pfa226
0.968191737
vioscreen_pfatot
23.27421875
vioscreen_phenylal
5.530383134
vioscreen_phosphor
1519.9910960000002
vioscreen_phytic
318.08878419999996
vioscreen_pinitol
0.0
vioscreen_potass
3212.921575
vioscreen_procdate
10/28/15
vioscreen_proline
6.125643461
vioscreen_protanim
120.9904752
vioscreen_protein
134.238399
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
13.24695794
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
243.0
vioscreen_retinol
340.1992937
vioscreen_rgrain
0.080328766
vioscreen_ribofla
2.108027544
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.35984
vioscreen_satoco
0.0
vioscreen_selenium
164.73471750000002
vioscreen_serine
5.8583562979999995
vioscreen_sfa100
0.505342332
vioscreen_sfa120
0.582136933
vioscreen_sfa140
3.251999612
vioscreen_sfa160
28.81290133
vioscreen_sfa170
0.276739732
vioscreen_sfa180
12.53449406
vioscreen_sfa200
0.29356166899999997
vioscreen_sfa220
0.351013685
vioscreen_sfa40
0.49479453700000003
vioscreen_sfa60
0.303150668
vioscreen_sfa80
0.179726023
vioscreen_sfatot
48.02350706
vioscreen_sodium
5499.8472600000005
vioscreen_sorbitol
0.006465754000000001
vioscreen_srvid
20288.0
vioscreen_starch
3.8491231
vioscreen_started
7/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
8.636629789
vioscreen_sweet_servings
0.0
vioscreen_tagatose
1.012219155
vioscreen_tfa161t
0.173808226
vioscreen_tfa181t
2.999397006
vioscreen_tfa182t
0.441315115
vioscreen_tgrain
0.080328766
vioscreen_thiamin
1.251452135
vioscreen_threonin
5.508465325
vioscreen_time
12.0
vioscreen_totaltfa
3.701670858
vioscreen_totcla
0.39969867
vioscreen_totfolat
273.15961039999996
vioscreen_totsugar
24.01011077
vioscreen_tryptoph
1.324547922
vioscreen_tyrosine
4.5160821780000004
vioscreen_user_id
20288.0
vioscreen_v_drkgr
0.42501371200000004
vioscreen_v_orange
0.0
vioscreen_v_other
1.5588492619999998
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.35663017399999997
vioscreen_v_total
2.34046564
vioscreen_valine
6.747752567999999
vioscreen_veg5_day
5.7
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.7
vioscreen_visit
1.0
vioscreen_vita_iu
5082.07226
vioscreen_vita_rae
537.6178082
vioscreen_vita_re
735.0350171
vioscreen_vitb12
10.97183554
vioscreen_vitb6
2.6312877919999997
vioscreen_vitc
91.94556935
vioscreen_vitd
18.58753478
vioscreen_vitd2
0.0
vioscreen_vitd3
18.58753478
vioscreen_vitd_iu
743.5013913
vioscreen_vite_iu
18.92865743
vioscreen_vitk
144.2021618
vioscreen_water
2681.46524
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.012164383999999999
vioscreen_zinc
17.91024722
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
96.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never