American Gut Project; 10317.000017687
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632398
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:43Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000017687
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
50.0
age_corrected
50.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
17687
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1965.0
bmi
21.63
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/09/2015
collection month
January
collection season
Winter
collection time
06:50
collection_timestamp
2015-01-09 06:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southeast
elevation
12.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
9be2af416ad49d405ba40b0eaf99a8e1e5c05a4096db7d93f586a2ca039da563f260a710a3970310705c100ec82c6074d60119a19ff2184f2d47f4595b3972a0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
38.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000017687
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
18be6c0da4fce7a8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.519890438
vioscreen_a_cal
317.7662885
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.665424629
vioscreen_addsugar
3.535068627
vioscreen_adsugtot
3.253424992
vioscreen_age
215.0
vioscreen_alanine
0.9467397190000001
vioscreen_alcohol
39.18863174
vioscreen_alcohol_servings
2.51989
vioscreen_alphacar
672.4930222999999
vioscreen_alphtoce
3.9319991439999997
vioscreen_alphtoco
3.481698817
vioscreen_arginine
1.228273825
vioscreen_ash
9.34819269
vioscreen_aspartam
0.0
vioscreen_aspartic
2.161369595
vioscreen_avcarb
57.45172303
vioscreen_bcodeid
Not provided
vioscreen_betacar
2715.1291100000003
vioscreen_betacryp
23.85424337
vioscreen_betaine
44.65602793
vioscreen_betatoco
0.131780807
vioscreen_biochana
0.008547945
vioscreen_bmi
Not provided
vioscreen_caffeine
73.53999893
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.39361999999999997
vioscreen_calcium_servings
1.30271
vioscreen_calories
883.2330479
vioscreen_carbo
68.60718108
vioscreen_cholest
124.19375
vioscreen_choline
172.61140840000002
vioscreen_clac9t11
0.024849317000000003
vioscreen_clat10c12
0.003753425
vioscreen_copper
0.646301353
vioscreen_coumest
0.066684932
vioscreen_cystine
0.305150698
vioscreen_d_cheese
0.367452083
vioscreen_d_milk
0.026164384
vioscreen_d_tot_soym
0.393616475
vioscreen_d_total
0.393616475
vioscreen_d_yogurt
0.0
vioscreen_daidzein
4.444465365
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.253561778
vioscreen_discfat_oil
12.24553323
vioscreen_discfat_sol
11.90720516
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.002575342
vioscreen_f_nj_citmlb
0.002383562
vioscreen_f_nj_other
0.01369863
vioscreen_f_nj_total
0.016082191000000003
vioscreen_f_other
0.01369863
vioscreen_f_total
0.016273973
vioscreen_fat
28.90282267
vioscreen_fiber
11.15578112
vioscreen_fibh2o
3.122163955
vioscreen_fibinso
8.068603516
vioscreen_finished
1/8/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
163.9519264
vioscreen_fol_nat
139.6414063
vioscreen_fol_syn
14.28523384
vioscreen_formontn
0.000520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
2.4025755159999997
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.7058082059999999
vioscreen_g_total
1.708219345
vioscreen_g_whl
1.002410972
vioscreen_galactos
0.06638356
vioscreen_gammtoco
3.853506595
vioscreen_gender
false
vioscreen_genistn
5.043671407
vioscreen_glac
21.80199593
vioscreen_gltc
25.20375107
vioscreen_glucose
2.7456710189999995
vioscreen_glutamic
4.507095797
vioscreen_glycine
0.775726068
vioscreen_glycitn
0.844246475
vioscreen_grams
2383.447603
vioscreen_hei2010_dairy
3.4
vioscreen_hei2010_empty_calories
6.3
vioscreen_hei2010_fatty_acids
6.0
vioscreen_hei2010_fruit
0.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.7
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
0.2
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.1
vioscreen_hei_grains
3.2
vioscreen_hei_meat_beans
9.3
vioscreen_hei_milk
3.4
vioscreen_hei_non_juice_frt
0.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.6
vioscreen_hei_score
52.1
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
0.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
0.574904141
vioscreen_inositol
0.178794526
vioscreen_iron
6.102027371
vioscreen_isoleuc
1.024520498
vioscreen_isomalt
0.0
vioscreen_joules
3695.4462329999997
vioscreen_juice_servings
0.00041
vioscreen_lactitol
0.0
vioscreen_lactose
0.6650684929999999
vioscreen_legumes
0.206301378
vioscreen_leucine
1.73062995
vioscreen_line_gi
102.0286494
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1406.208476
vioscreen_lycopene
2267.7602739999998
vioscreen_lysine
1.341972706
vioscreen_m_egg
0.5041917770000001
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.015232876999999999
vioscreen_m_mpf
0.015232876999999999
vioscreen_m_nutsd
0.17252054100000003
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.545945217
vioscreen_magnes
177.91974530000002
vioscreen_maltitol
0.0
vioscreen_maltose
0.6883013159999999
vioscreen_mangan
2.203479338
vioscreen_mannitol
0.107397262
vioscreen_methhis3
0.128410956
vioscreen_methion
0.42402736700000004
vioscreen_mfa141
0.036821917
vioscreen_mfa161
0.3714794
vioscreen_mfa181
10.99679407
vioscreen_mfa201
0.105287672
vioscreen_mfa221
0.002054795
vioscreen_mfatot
11.61619355
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
3.481698817
vioscreen_nccglbr
39.98265197
vioscreen_nccglgr
27.97060146
vioscreen_niacin
5.287588961
vioscreen_niacineq
9.783067342999999
vioscreen_nitrogen
3.754903882
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.6983561890000001
vioscreen_oxalic
110.74775259999998
vioscreen_oxalicm
79.55706336
vioscreen_pantothe
2.061369763
vioscreen_pectins
1.280821918
vioscreen_pfa182
5.250329088
vioscreen_pfa183
0.683452073
vioscreen_pfa184
0.000657534
vioscreen_pfa204
0.045342464000000006
vioscreen_pfa205
0.002191781
vioscreen_pfa225
0.001890411
vioscreen_pfa226
0.010191781
vioscreen_pfatot
6.017999518
vioscreen_phenylal
1.082137016
vioscreen_phosphor
541.4731592
vioscreen_phytic
428.16181510000007
vioscreen_pinitol
0.029890411000000002
vioscreen_potass
1411.841096
vioscreen_procdate
10/28/15
vioscreen_proline
1.4501095290000001
vioscreen_protanim
7.968000187
vioscreen_protein
23.00323202
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.035806400000002
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
648.0
vioscreen_retinol
118.0054259
vioscreen_rgrain
0.616520545
vioscreen_ribofla
0.699972534
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.25129
vioscreen_satoco
0.0
vioscreen_selenium
35.09904484
vioscreen_serine
1.210465773
vioscreen_sfa100
0.19838355100000002
vioscreen_sfa120
0.212273982
vioscreen_sfa140
0.857041116
vioscreen_sfa160
4.9821369330000005
vioscreen_sfa170
0.039424658
vioscreen_sfa180
1.8807122219999999
vioscreen_sfa200
0.066849314
vioscreen_sfa220
0.054986306
vioscreen_sfa40
0.234630135
vioscreen_sfa60
0.129178086
vioscreen_sfa80
0.08958904300000001
vioscreen_sfatot
8.915178189
vioscreen_sodium
1455.854795
vioscreen_sorbitol
0.052958904
vioscreen_srvid
16803.0
vioscreen_starch
32.51777611
vioscreen_started
1/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
4.301150471000001
vioscreen_sweet_servings
0.02555
vioscreen_tagatose
0.14747944699999999
vioscreen_tfa161t
0.029315071
vioscreen_tfa181t
0.46983559
vioscreen_tfa182t
0.11586300599999999
vioscreen_tgrain
1.769123234
vioscreen_thiamin
0.510821909
vioscreen_threonin
0.856767127
vioscreen_time
15.0
vioscreen_totaltfa
0.636465747
vioscreen_totcla
0.028821918999999998
vioscreen_totfolat
153.9266053
vioscreen_totsugar
10.88383522
vioscreen_tryptoph
0.269999987
vioscreen_tyrosine
0.780630033
vioscreen_user_id
16803.0
vioscreen_v_drkgr
0.32419178600000004
vioscreen_v_orange
0.147205468
vioscreen_v_other
0.618904135
vioscreen_v_potato
0.14789041
vioscreen_v_starcy
0.0056164380000000005
vioscreen_v_tomato
0.13326027199999999
vioscreen_v_total
1.377068507
vioscreen_valine
1.183397183
vioscreen_veg5_day
3.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
2.7
vioscreen_visit
1.0
vioscreen_vita_iu
5500.225342
vioscreen_vita_rae
373.2808647
vioscreen_vita_re
628.5562927999999
vioscreen_vitb12
0.655013704
vioscreen_vitb6
0.7816712259999999
vioscreen_vitc
40.99186376
vioscreen_vitd
1.387123254
vioscreen_vitd2
0.0
vioscreen_vitd3
1.387123254
vioscreen_vitd_iu
55.48493017
vioscreen_vite_iu
5.183835215
vioscreen_vitk
86.07959653
vioscreen_water
2218.30411
vioscreen_weight
Not provided
vioscreen_wgrain
1.152657621
vioscreen_whole_grain_servings
1.00241
vioscreen_xylitol
0.056465755
vioscreen_zinc
3.84649307
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)