American Gut Project; 10317.000031468
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634320
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:31Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031468
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031468
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1975.0
bmi
25.77
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-14
collection month
August
collection season
Summer
collection time
10:00
collection_timestamp
2015-08-14 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
45.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
7d06cf9f607bc41a52f5192c450242a87aa836ee3033ae07005e95c048b3bc7ef6507e2b8738d00f9b670af0b162de9d059cef4656a66dbf307f43aa651900e8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-76.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031468
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Regularly (3-5 times/week)
sugary_sweets_frequency
Daily
survey_id
b8d62276ce63da93
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.47134244700000005
vioscreen_a_cal
61.45569884
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.82698523
vioscreen_addsugar
83.17285424
vioscreen_adsugtot
59.33794949
vioscreen_age
215.0
vioscreen_alanine
2.1699996319999997
vioscreen_alcohol
7.081944965
vioscreen_alcohol_servings
0.47134
vioscreen_alphacar
201.83163530000002
vioscreen_alphtoce
9.367695848
vioscreen_alphtoco
8.380684797999999
vioscreen_arginine
2.621013485
vioscreen_ash
16.93980897
vioscreen_aspartam
69.57230308
vioscreen_aspartic
4.068300514
vioscreen_avcarb
196.6341396
vioscreen_bcodeid
Not provided
vioscreen_betacar
9256.608219
vioscreen_betacryp
166.8760274
vioscreen_betaine
181.19180219999998
vioscreen_betatoco
0.18550686800000002
vioscreen_biochana
0.007863014
vioscreen_bmi
Not provided
vioscreen_caffeine
170.5560467
vioscreen_calcium
true
vioscreen_calcium_avg
1200.0
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.5363600000000001
vioscreen_calcium_servings
2.45825
vioscreen_calories
1424.170034
vioscreen_carbo
217.5938356
vioscreen_cholest
339.4915454
vioscreen_choline
387.6995291
vioscreen_clac9t11
0.027013698
vioscreen_clat10c12
0.004465753
vioscreen_copper
1.168136806
vioscreen_coumest
0.057780822
vioscreen_cystine
0.7187670559999999
vioscreen_d_cheese
0.215698618
vioscreen_d_milk
0.17739726
vioscreen_d_tot_soym
0.536356176
vioscreen_d_total
0.536356176
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.32920548899999996
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.217068607
vioscreen_discfat_oil
11.18978021
vioscreen_discfat_sol
21.42186162
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.67586302
vioscreen_f_nj_citmlb
0.6748767170000001
vioscreen_f_nj_other
0.7381369390000001
vioscreen_f_nj_total
1.4132329240000001
vioscreen_f_other
0.7381369390000001
vioscreen_f_total
1.414219185
vioscreen_fat
40.01904163
vioscreen_fiber
20.95975359
vioscreen_fibh2o
6.258520842
vioscreen_fibinso
14.7049885
vioscreen_finished
8/9/15
vioscreen_fish_servings
0.45211999999999997
vioscreen_fol_deqv
490.57658389999995
vioscreen_fol_nat
321.1641053
vioscreen_fol_syn
99.50665668
vioscreen_formontn
0.0033424659999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.8
vioscreen_fructose
23.91205587
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.6627394580000003
vioscreen_g_total
5.022438196
vioscreen_g_whl
1.35967123
vioscreen_galactos
0.974904016
vioscreen_gammtoco
8.921671661
vioscreen_gender
false
vioscreen_genistn
0.449616356
vioscreen_glac
87.0778842
vioscreen_gltc
92.43173159
vioscreen_glucose
30.40526274
vioscreen_glutamic
9.171178029
vioscreen_glycine
1.8378083530000002
vioscreen_glycitn
0.084876711
vioscreen_grams
4270.883218999999
vioscreen_hei2010_dairy
2.9
vioscreen_hei2010_empty_calories
12.2
vioscreen_hei2010_fatty_acids
7.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.0
vioscreen_hei2010_refined_grains
6.9
vioscreen_hei2010_score
64.7
vioscreen_hei2010_sea_foods_plant_protiens
2.8
vioscreen_hei2010_sodium
2.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.0
vioscreen_hei_milk
2.9
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.5
vioscreen_hei_sat_fat
9.9
vioscreen_hei_score
67.0
vioscreen_hei_sodium
1.7
vioscreen_hei_sol_fat_alc_add_sug
9.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.2
vioscreen_height
Not provided
vioscreen_histidin
1.145123291
vioscreen_inositol
0.105150698
vioscreen_iron
11.59150792
vioscreen_isoleuc
2.065726335
vioscreen_isomalt
0.0
vioscreen_joules
5958.7294520000005
vioscreen_juice_servings
0.00195
vioscreen_lactitol
0.0
vioscreen_lactose
5.180082473
vioscreen_legumes
0.006520548
vioscreen_leucine
3.452520668
vioscreen_line_gi
372.9368151
vioscreen_low_fat_dairy_serving
0.19355999999999998
vioscreen_lutzeax
17474.212330000002
vioscreen_lycopene
887.9768836000001
vioscreen_lysine
2.734246408
vioscreen_m_egg
1.5676438419999998
vioscreen_m_fish_hi
0.164493153
vioscreen_m_fish_lo
0.09712329
vioscreen_m_frank
0.068301371
vioscreen_m_meat
0.037232877000000004
vioscreen_m_mpf
0.923780885
vioscreen_m_nutsd
0.089041096
vioscreen_m_organ
0.0
vioscreen_m_poult
0.556657556
vioscreen_m_soy
0.255726038
vioscreen_magnes
315.7539384
vioscreen_maltitol
0.0
vioscreen_maltose
9.487533444
vioscreen_mangan
4.269396137
vioscreen_mannitol
0.061123297
vioscreen_methhis3
3.554821945
vioscreen_methion
1.012739626
vioscreen_mfa141
0.018383562
vioscreen_mfa161
0.518794522
vioscreen_mfa181
15.23791604
vioscreen_mfa201
0.133945204
vioscreen_mfa221
0.039534245
vioscreen_mfatot
16.12898518
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.380684797999999
vioscreen_nccglbr
164.2362479
vioscreen_nccglgr
114.88920159999998
vioscreen_niacin
11.15049096
vioscreen_niacineq
21.09301156
vioscreen_nitrogen
7.929861408
vioscreen_non_fried_fish_servings
0.45211999999999997
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.249123518
vioscreen_oxalic
915.8567637
vioscreen_oxalicm
954.6089041000001
vioscreen_pantothe
4.044356004
vioscreen_pectins
3.700410691
vioscreen_pfa182
7.1041644370000006
vioscreen_pfa183
1.108739733
vioscreen_pfa184
0.007315068
vioscreen_pfa204
0.151726041
vioscreen_pfa205
0.03342466
vioscreen_pfa225
0.013479452
vioscreen_pfa226
0.08638355800000001
vioscreen_pfatot
8.576986568999999
vioscreen_phenylal
2.202520501
vioscreen_phosphor
838.1177226
vioscreen_phytic
377.06489730000004
vioscreen_pinitol
0.060191784000000005
vioscreen_potass
2503.0253420000004
vioscreen_procdate
10/28/15
vioscreen_proline
3.192821931
vioscreen_protanim
23.67545216
vioscreen_protein
48.4960884
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.81874197
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
217.0
vioscreen_retinol
229.3531892
vioscreen_rgrain
4.501150471
vioscreen_ribofla
1.6466853730000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.66378
vioscreen_satoco
0.0
vioscreen_selenium
85.95799979
vioscreen_serine
2.408876184
vioscreen_sfa100
0.129561646
vioscreen_sfa120
0.152657538
vioscreen_sfa140
0.655123358
vioscreen_sfa160
6.936082647
vioscreen_sfa170
0.032821919
vioscreen_sfa180
2.972246562
vioscreen_sfa200
0.05613698599999999
vioscreen_sfa220
0.045315071
vioscreen_sfa40
0.175999994
vioscreen_sfa60
0.086794521
vioscreen_sfa80
0.063095892
vioscreen_sfatot
11.42547892
vioscreen_sodium
2573.582021
vioscreen_sorbitol
0.29989042899999996
vioscreen_srvid
20360.0
vioscreen_starch
62.40203339
vioscreen_started
8/9/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
30.99372325
vioscreen_sweet_servings
1.09404
vioscreen_tagatose
1.316465697
vioscreen_tfa161t
0.008739726
vioscreen_tfa181t
2.358411146
vioscreen_tfa182t
0.315315079
vioscreen_tgrain
5.80687607
vioscreen_thiamin
1.179041113
vioscreen_threonin
1.82849305
vioscreen_time
25.0
vioscreen_totaltfa
2.75356161
vioscreen_totcla
0.032273974
vioscreen_totfolat
420.6709331999999
vioscreen_totsugar
101.9468964
vioscreen_tryptoph
0.597945289
vioscreen_tyrosine
1.6725478919999999
vioscreen_user_id
20360.0
vioscreen_v_drkgr
1.104054825
vioscreen_v_orange
0.023342467000000002
vioscreen_v_other
0.950520555
vioscreen_v_potato
0.010986302
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.027561645
vioscreen_v_total
2.116465446
vioscreen_valine
2.395479552
vioscreen_veg5_day
7.1
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
4.2
vioscreen_visit
1.0
vioscreen_vita_iu
16499.41507
vioscreen_vita_rae
1016.0992289999999
vioscreen_vita_re
1802.8477739999998
vioscreen_vitb12
1.886630124
vioscreen_vitb6
1.27536989
vioscreen_vitc
140.230458
vioscreen_vitd
2.9079997860000004
vioscreen_vitd2
0.000410959
vioscreen_vitd3
2.907616519
vioscreen_vitd_iu
116.3199914
vioscreen_vite_iu
12.48920564
vioscreen_vitk
646.3622002999999
vioscreen_water
3962.1609590000003
vioscreen_weight
Not provided
vioscreen_wgrain
1.305753441
vioscreen_whole_grain_servings
1.3596700000000002
vioscreen_xylitol
0.043534252999999995
vioscreen_zinc
5.766794868
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
86.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)