American Gut Project; 10317.000022900
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632570
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022900
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
22900
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
23.8
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-20
collection month
January
collection season
Winter
collection time
16:10
collection_timestamp
2015-01-20 16:10
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
68.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f0069fed5bab8abf277faef388983fe7a6906a01431ca87b89e616cd774ecbda573c55125864e880880486c0cabd3842156506cbde87262e2d17842eda4bfe64
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-73.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022900
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Not provided
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CT
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
9928ed54b1b27585
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.114109583
vioscreen_a_cal
13.80862987
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.014383896
vioscreen_addsugar
24.36084653
vioscreen_adsugtot
22.43876284
vioscreen_age
215.0
vioscreen_alanine
3.4733699430000002
vioscreen_alcohol
1.741260267
vioscreen_alcohol_servings
0.11410999999999999
vioscreen_alphacar
3230.664041
vioscreen_alphtoce
15.23855148
vioscreen_alphtoco
13.83235499
vioscreen_arginine
3.980081469
vioscreen_ash
19.81627515
vioscreen_aspartam
15.97526086
vioscreen_aspartic
6.686713398999999
vioscreen_avcarb
136.8680009
vioscreen_bcodeid
Not provided
vioscreen_betacar
13034.48219
vioscreen_betacryp
171.421982
vioscreen_betaine
106.26101240000001
vioscreen_betatoco
0.231369792
vioscreen_biochana
0.020986302000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
287.3760702
vioscreen_calcium
true
vioscreen_calcium_avg
685.0
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
6
vioscreen_calcium_from_dairy_servings
0.77732
vioscreen_calcium_servings
2.28362
vioscreen_calories
1597.532534
vioscreen_carbo
166.5390625
vioscreen_cholest
170.50245080000002
vioscreen_choline
301.3682791
vioscreen_clac9t11
0.062684929
vioscreen_clat10c12
0.010602739
vioscreen_copper
1.193643816
vioscreen_coumest
0.178712338
vioscreen_cystine
0.849561717
vioscreen_d_cheese
0.590630184
vioscreen_d_milk
0.129178086
vioscreen_d_tot_soym
0.777315072
vioscreen_d_total
0.777315072
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.30594520000000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.257041032
vioscreen_discfat_oil
45.363559499999994
vioscreen_discfat_sol
19.06348058
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0014246570000000002
vioscreen_f_citmlb
1.1995616340000002
vioscreen_f_nj_citmlb
1.1954247040000001
vioscreen_f_nj_other
0.620438333
vioscreen_f_nj_total
1.8158356969999998
vioscreen_f_other
0.620438333
vioscreen_f_total
1.81997271
vioscreen_fat
76.48435359999999
vioscreen_fiber
29.64452055
vioscreen_fibh2o
8.328631341
vioscreen_fibinso
21.4017752
vioscreen_finished
1/17/15
vioscreen_fish_servings
2.4226900000000002
vioscreen_fol_deqv
506.93557360000005
vioscreen_fol_nat
396.58797089999996
vioscreen_fol_syn
64.88040989
vioscreen_formontn
0.003260274
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.6
vioscreen_fructose
21.44496067
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
2.028328841
vioscreen_g_total
3.441588854
vioscreen_g_whl
1.4133150280000002
vioscreen_galactos
0.272630122
vioscreen_gammtoco
6.479203901
vioscreen_gender
false
vioscreen_genistn
0.226958894
vioscreen_glac
58.65276648
vioscreen_gltc
67.95478917
vioscreen_glucose
20.80972416
vioscreen_glutamic
13.11079436
vioscreen_glycine
2.9188489939999998
vioscreen_glycitn
0.037780822
vioscreen_grams
3051.508904
vioscreen_hei2010_dairy
3.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.5
vioscreen_hei_score
77.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.9361918409999999
vioscreen_inositol
0.18890416399999999
vioscreen_iron
12.05997164
vioscreen_isoleuc
3.2702191910000002
vioscreen_isomalt
0.0
vioscreen_joules
6684.077397
vioscreen_juice_servings
0.0083
vioscreen_lactitol
0.0
vioscreen_lactose
4.665561457
vioscreen_legumes
0.130684934
vioscreen_leucine
5.467369768999999
vioscreen_line_gi
386.44978599999996
vioscreen_low_fat_dairy_serving
0.62373
vioscreen_lutzeax
8793.714384
vioscreen_lycopene
4855.132192
vioscreen_lysine
5.092273116
vioscreen_m_egg
0.244191773
vioscreen_m_fish_hi
0.765287718
vioscreen_m_fish_lo
0.6152602939999999
vioscreen_m_frank
0.16926027100000002
vioscreen_m_meat
0.399506828
vioscreen_m_mpf
4.142164424
vioscreen_m_nutsd
0.320356165
vioscreen_m_organ
0.0
vioscreen_m_poult
2.192821931
vioscreen_m_soy
0.004520548
vioscreen_magnes
313.9776113
vioscreen_maltitol
0.0
vioscreen_maltose
1.59090409
vioscreen_mangan
4.276082245
vioscreen_mannitol
0.324191828
vioscreen_methhis3
15.6037805
vioscreen_methion
1.620082071
vioscreen_mfa141
0.025479453
vioscreen_mfa161
1.2257258999999998
vioscreen_mfa181
38.65174979
vioscreen_mfa201
0.32945207600000004
vioscreen_mfa221
0.12394521
vioscreen_mfatot
40.60766267
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.29871174
vioscreen_nccglbr
106.74915449999999
vioscreen_nccglgr
74.67548694
vioscreen_niacin
19.6561082
vioscreen_niacineq
33.67147635
vioscreen_nitrogen
11.69712249
vioscreen_non_fried_fish_servings
2.23942
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7974524090000001
vioscreen_oxalic
382.7096747
vioscreen_oxalicm
372.74927230000003
vioscreen_pantothe
6.063068547
vioscreen_pectins
5.173123127
vioscreen_pfa182
10.17454316
vioscreen_pfa183
1.376876789
vioscreen_pfa184
0.028849313999999997
vioscreen_pfa204
0.131835603
vioscreen_pfa205
0.10673972400000001
vioscreen_pfa225
0.052739725999999994
vioscreen_pfa226
0.23345201
vioscreen_pfatot
12.18717894
vioscreen_phenylal
3.046246923
vioscreen_phosphor
1096.2185789999999
vioscreen_phytic
498.6235017
vioscreen_pinitol
0.004739726
vioscreen_potass
3288.37637
vioscreen_procdate
10/28/15
vioscreen_proline
4.159835523
vioscreen_protanim
48.48509204
vioscreen_protein
72.58415026
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.09838131
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
613.0
vioscreen_retinol
188.7195634
vioscreen_rgrain
2.041808246
vioscreen_ribofla
1.836328961
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.195180000000001
vioscreen_satoco
1.190356194
vioscreen_selenium
87.99247109999999
vioscreen_serine
3.12189005
vioscreen_sfa100
0.263287667
vioscreen_sfa120
0.455342499
vioscreen_sfa140
1.3265753759999999
vioscreen_sfa160
11.23767123
vioscreen_sfa170
0.03931508
vioscreen_sfa180
3.639288581
vioscreen_sfa200
0.212657563
vioscreen_sfa220
0.117534261
vioscreen_sfa40
0.35098630299999994
vioscreen_sfa60
0.14961644
vioscreen_sfa80
0.129808222
vioscreen_sfatot
18.25314908
vioscreen_sodium
3348.234589
vioscreen_sorbitol
0.225041115
vioscreen_srvid
16911.0
vioscreen_starch
53.52753104
vioscreen_started
1/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.021452055
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.28353489
vioscreen_sweet_servings
0.28306
vioscreen_tagatose
0.733123278
vioscreen_tfa161t
0.059863015
vioscreen_tfa181t
0.949041163
vioscreen_tfa182t
0.19243835
vioscreen_tgrain
3.3766029669999997
vioscreen_thiamin
1.1769592290000002
vioscreen_threonin
2.8687118739999997
vioscreen_time
32.0
vioscreen_totaltfa
1.263808326
vioscreen_totcla
0.074109592
vioscreen_totfolat
461.4683219
vioscreen_totsugar
70.50636237
vioscreen_tryptoph
0.841561597
vioscreen_tyrosine
2.507616351
vioscreen_user_id
16911.0
vioscreen_v_drkgr
1.157150645
vioscreen_v_orange
0.641150655
vioscreen_v_other
2.188630237
vioscreen_v_potato
0.126301366
vioscreen_v_starcy
0.09630137400000001
vioscreen_v_tomato
0.36736985299999997
vioscreen_v_total
4.57695881
vioscreen_valine
3.662082285
vioscreen_veg5_day
8.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
9.1
vioscreen_visit
1.0
vioscreen_vita_iu
25189.7589
vioscreen_vita_rae
1416.680736
vioscreen_vita_re
2644.64161
vioscreen_vitb12
3.165397247
vioscreen_vitb6
1.843698831
vioscreen_vitc
198.1163313
vioscreen_vitd
4.709122833
vioscreen_vitd2
0.000273973
vioscreen_vitd3
4.708848927
vioscreen_vitd_iu
188.3649133
vioscreen_vite_iu
21.00723058
vioscreen_vitk
372.3448202
vioscreen_water
2726.197945
vioscreen_weight
Not provided
vioscreen_wgrain
1.334821978
vioscreen_whole_grain_servings
1.4133200000000001
vioscreen_xylitol
0.067150691
vioscreen_zinc
8.887616385
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily