American Gut Project; 10317.000021257
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632447
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021257
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21257
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1976.0
bmi
23.05
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2014-12-29
collection month
December
collection season
Winter
collection time
10:00
collection_timestamp
2014-12-29 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
Not provided
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
dc6d3a36001ad0546c65813c9d8e9071d0c6caf4d7833fb62fa72d3150e7e50e590b9601608ab28d93ee787835e1a37b8eab74dc083d12ebc78d55c480a4e85b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by an alternative medicine practitioner
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
Not provided
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
Not provided
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000021257
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
ac8cb55fa886acc5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.6107671030000001
vioscreen_addsugar
9.012958851
vioscreen_adsugtot
8.419123234
vioscreen_age
214.0
vioscreen_alanine
9.020383401
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
6926.798629999999
vioscreen_alphtoce
25.49159621
vioscreen_alphtoco
24.28095837
vioscreen_arginine
9.956904162999999
vioscreen_ash
29.44057417
vioscreen_aspartam
0.0
vioscreen_aspartic
14.54084841
vioscreen_avcarb
71.45244542
vioscreen_bcodeid
Not provided
vioscreen_betacar
30331.210960000004
vioscreen_betacryp
116.59180220000002
vioscreen_betaine
121.8473994
vioscreen_betatoco
0.309424643
vioscreen_biochana
0.010739726000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.04964
vioscreen_calcium_servings
1.99548
vioscreen_calories
3010.611986
vioscreen_carbo
97.89814855
vioscreen_cholest
652.8041096
vioscreen_choline
707.2662671
vioscreen_clac9t11
0.300739717
vioscreen_clat10c12
0.091753429
vioscreen_copper
4.860191701000001
vioscreen_coumest
0.002219178
vioscreen_cystine
1.890684865
vioscreen_d_cheese
0.00539726
vioscreen_d_milk
0.044054794
vioscreen_d_tot_soym
0.049643837999999996
vioscreen_d_total
0.049643837999999996
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.020109589
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.968383455
vioscreen_discfat_oil
105.78622649999998
vioscreen_discfat_sol
66.04751177
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.593041114
vioscreen_f_nj_citmlb
0.584219193
vioscreen_f_nj_other
0.230986295
vioscreen_f_nj_total
0.8152054459999999
vioscreen_f_other
0.230986295
vioscreen_f_total
0.8240275340000001
vioscreen_fat
225.8502997
vioscreen_fiber
26.44706764
vioscreen_fibh2o
5.933561644
vioscreen_fibinso
20.66898411
vioscreen_finished
12/29/14
vioscreen_fish_servings
2.10558
vioscreen_fol_deqv
552.497988
vioscreen_fol_nat
533.8273116
vioscreen_fol_syn
10.98586259
vioscreen_formontn
0.0045753420000000005
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.6
vioscreen_fructose
8.44958864
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.6057260170000001
vioscreen_g_total
0.6057260170000001
vioscreen_g_whl
0.0
vioscreen_galactos
0.12208219599999999
vioscreen_gammtoco
10.64137013
vioscreen_gender
false
vioscreen_genistn
0.025534246
vioscreen_glac
28.50155982
vioscreen_gltc
36.63164598
vioscreen_glucose
9.422302412999999
vioscreen_glutamic
22.82796982
vioscreen_glycine
8.830958369
vioscreen_glycitn
0.002246575
vioscreen_grams
3994.416438
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
18.9
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
62.9
vioscreen_hei2010_sea_foods_plant_protiens
3.8
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.4
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.7
vioscreen_hei_grains
0.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
3.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
4.736191674
vioscreen_inositol
0.147013698
vioscreen_iron
20.85433032
vioscreen_isoleuc
7.017369435
vioscreen_isomalt
0.0
vioscreen_joules
12596.408220000001
vioscreen_juice_servings
0.01764
vioscreen_lactitol
0.0
vioscreen_lactose
0.59378081
vioscreen_legumes
0.0
vioscreen_leucine
11.75849342
vioscreen_line_gi
264.60479449999997
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
23704.78904
vioscreen_lycopene
940.0860445000001
vioscreen_lysine
12.25525872
vioscreen_m_egg
0.057917812
vioscreen_m_fish_hi
0.45986303
vioscreen_m_fish_lo
0.740191818
vioscreen_m_frank
2.06720556
vioscreen_m_meat
9.979999866
vioscreen_m_mpf
17.9221372
vioscreen_m_nutsd
0.620137003
vioscreen_m_organ
1.6130136990000001
vioscreen_m_poult
3.062054861
vioscreen_m_soy
0.00005479999999999999
vioscreen_magnes
368.51635269999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.597068306
vioscreen_mangan
3.0151504310000004
vioscreen_mannitol
0.262273961
vioscreen_methhis3
58.4822988
vioscreen_methion
3.777589228
vioscreen_mfa141
0.43460275299999995
vioscreen_mfa161
5.234054273
vioscreen_mfa181
114.5859696
vioscreen_mfa201
0.936136909
vioscreen_mfa221
0.072219175
vioscreen_mfatot
121.8722389
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
24.28095837
vioscreen_nccglbr
56.91156357
vioscreen_nccglgr
39.80690283
vioscreen_niacin
44.26054688
vioscreen_niacineq
68.52352847
vioscreen_nitrogen
24.72260274
vioscreen_non_fried_fish_servings
2.10558
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.369341957
vioscreen_oxalic
654.6231592
vioscreen_oxalicm
698.5262842
vioscreen_pantothe
8.927589897
vioscreen_pectins
6.410547544
vioscreen_pfa182
26.43287939
vioscreen_pfa183
3.085862586
vioscreen_pfa184
0.012520548000000001
vioscreen_pfa204
0.44208219299999996
vioscreen_pfa205
0.058767125
vioscreen_pfa225
0.056958907
vioscreen_pfa226
0.156986299
vioscreen_pfatot
30.67181079
vioscreen_phenylal
6.25890411
vioscreen_phosphor
1618.238699
vioscreen_phytic
263.3390839
vioscreen_pinitol
0.0000822
vioscreen_potass
3965.961644
vioscreen_procdate
10/28/15
vioscreen_proline
7.10958971
vioscreen_protanim
134.1579409
vioscreen_protein
153.0666845
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.91057363
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
667.0
vioscreen_retinol
3066.5657530000003
vioscreen_rgrain
0.456684896
vioscreen_ribofla
2.8100823389999996
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.1903299999999999
vioscreen_satoco
0.0
vioscreen_selenium
180.26838610000001
vioscreen_serine
6.152383883
vioscreen_sfa100
0.154821913
vioscreen_sfa120
0.21797261699999998
vioscreen_sfa140
2.336054554
vioscreen_sfa160
37.4819162
vioscreen_sfa170
0.291342477
vioscreen_sfa180
15.30646672
vioscreen_sfa200
0.49290412
vioscreen_sfa220
0.27060273100000004
vioscreen_sfa40
0.011315068999999999
vioscreen_sfa60
0.005479451999999999
vioscreen_sfa80
0.003479452
vioscreen_sfatot
57.06618686
vioscreen_sodium
6280.885616
vioscreen_sorbitol
0.068931512
vioscreen_srvid
16661.0
vioscreen_starch
22.61315015
vioscreen_started
12/29/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
16.58197105
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.001534247
vioscreen_tfa161t
0.204410961
vioscreen_tfa181t
3.4751508319999997
vioscreen_tfa182t
0.500904115
vioscreen_tgrain
0.456684896
vioscreen_thiamin
1.571890384
vioscreen_threonin
6.384465967000001
vioscreen_time
23.0
vioscreen_totaltfa
4.276575543
vioscreen_totcla
0.389479504
vioscreen_totfolat
544.8131421
vioscreen_totsugar
37.4316433
vioscreen_tryptoph
1.456191808
vioscreen_tyrosine
5.065424336
vioscreen_user_id
16661.0
vioscreen_v_drkgr
1.207260257
vioscreen_v_orange
1.559643722
vioscreen_v_other
1.12136983
vioscreen_v_potato
0.075972601
vioscreen_v_starcy
0.5006849320000001
vioscreen_v_tomato
0.056164384000000005
vioscreen_v_total
4.521095422
vioscreen_valine
7.646850251
vioscreen_veg5_day
9.0
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
9.0
vioscreen_visit
1.0
vioscreen_vita_iu
66642.04932
vioscreen_vita_rae
5887.642465999999
vioscreen_vita_re
8708.716438
vioscreen_vitb12
28.22167434
vioscreen_vitb6
3.409068654
vioscreen_vitc
132.64944350000002
vioscreen_vitd
5.539424362999999
vioscreen_vitd2
0.002383562
vioscreen_vitd3
5.537068572999999
vioscreen_vitd_iu
221.5769745
vioscreen_vite_iu
36.24708904
vioscreen_vitk
945.9583048000001
vioscreen_water
3507.9363009999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.032904113
vioscreen_zinc
23.99276541
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
57.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never