10317.000026139; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633143
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026139
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26139
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Not provided
birth year
1955.0
bmi
27.41
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-14
collection month
April
collection season
Spring
collection time
11:30
collection_timestamp
2015-04-14 11:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
2.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
1de445d508d0ab6faef234ddbe0034211d08db89378bb28109ba4a0b1971b901915607001d927ff3df07679a24ed230681411337b0ac71e4509463f74df8fd1f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Not provided
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
More than three
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026139
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
e7f6967548bd197a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.31509525
vioscreen_addsugar
56.9208262
vioscreen_adsugtot
52.04531785
vioscreen_age
215.0
vioscreen_alanine
5.392738656000001
vioscreen_alcohol
0.07290411599999999
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
811.5175514
vioscreen_alphtoce
19.97104158
vioscreen_alphtoco
13.7582767
vioscreen_arginine
6.063508000000001
vioscreen_ash
30.35496308
vioscreen_aspartam
0.0
vioscreen_aspartic
10.44693319
vioscreen_avcarb
328.0174015
vioscreen_bcodeid
Not provided
vioscreen_betacar
3152.4178079999997
vioscreen_betacryp
210.3909889
vioscreen_betaine
265.9554152
vioscreen_betatoco
0.51821912
vioscreen_biochana
0.017068493
vioscreen_bmi
Not provided
vioscreen_caffeine
428.7418664
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.7343599999999997
vioscreen_calcium_servings
6.08033
vioscreen_calories
3100.675685
vioscreen_carbo
360.14332189999993
vioscreen_cholest
417.01892119999997
vioscreen_choline
472.1376284
vioscreen_clac9t11
0.355150698
vioscreen_clat10c12
0.067698628
vioscreen_copper
1.822465954
vioscreen_coumest
0.359178099
vioscreen_cystine
1.4459452590000001
vioscreen_d_cheese
0.965589048
vioscreen_d_milk
1.387972646
vioscreen_d_tot_soym
2.7343562710000002
vioscreen_d_total
2.7343562710000002
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
2.285095884
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.197397393999999
vioscreen_discfat_oil
30.88059985
vioscreen_discfat_sol
90.6166738
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00139726
vioscreen_f_citmlb
1.178438286
vioscreen_f_nj_citmlb
0.420054815
vioscreen_f_nj_other
1.34890421
vioscreen_f_nj_total
1.768986449
vioscreen_f_other
1.34890421
vioscreen_f_total
2.527369669
vioscreen_fat
139.8641053
vioscreen_fiber
32.11153146
vioscreen_fibh2o
12.24002836
vioscreen_fibinso
19.90185948
vioscreen_finished
4/14/15
vioscreen_fish_servings
3.3965400000000003
vioscreen_fol_deqv
856.5745719
vioscreen_fol_nat
356.0819135
vioscreen_fol_syn
294.2610231
vioscreen_formontn
0.006109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
5.1
vioscreen_fructose
26.73213827
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
8.33671273
vioscreen_g_total
9.921616813
vioscreen_g_whl
1.584849402
vioscreen_galactos
0.8594794290000001
vioscreen_gammtoco
19.69816326
vioscreen_gender
false
vioscreen_genistn
3.637834774
vioscreen_glac
178.5899615
vioscreen_gltc
192.10338180000002
vioscreen_glucose
25.70032374
vioscreen_glutamic
24.34407909
vioscreen_glycine
4.562384284
vioscreen_glycitn
0.5593424339999999
vioscreen_grams
4331.140411
vioscreen_hei2010_dairy
6.8
vioscreen_hei2010_empty_calories
11.0
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.5
vioscreen_hei2010_protien_foods
4.3
vioscreen_hei2010_refined_grains
6.4
vioscreen_hei2010_score
56.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.2
vioscreen_hei2010_veg
4.2
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.4
vioscreen_hei_drk_g_org_veg_leg
1.4
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
6.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.3
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
60.9
vioscreen_hei_sodium
3.4
vioscreen_hei_sol_fat_alc_add_sug
11.4
vioscreen_hei_veg
4.2
vioscreen_hei_whl_grains
1.7
vioscreen_height
Not provided
vioscreen_histidin
3.194548306
vioscreen_inositol
0.317753413
vioscreen_iron
24.31671661
vioscreen_isoleuc
5.309452255
vioscreen_isomalt
0.0
vioscreen_joules
12973.230140000001
vioscreen_juice_servings
1.5167899999999999
vioscreen_lactitol
0.0
vioscreen_lactose
25.29455265
vioscreen_legumes
0.058136984
vioscreen_leucine
9.369808166
vioscreen_line_gi
746.2874144
vioscreen_low_fat_dairy_serving
0.42216000000000004
vioscreen_lutzeax
2577.309589
vioscreen_lycopene
8109.568493000001
vioscreen_lysine
7.7327690229999995
vioscreen_m_egg
0.481452043
vioscreen_m_fish_hi
0.491123314
vioscreen_m_fish_lo
1.467534313
vioscreen_m_frank
0.695342474
vioscreen_m_meat
1.537945306
vioscreen_m_mpf
5.305725934
vioscreen_m_nutsd
0.6880000279999999
vioscreen_m_organ
0.0
vioscreen_m_poult
1.114054808
vioscreen_m_soy
0.029534248
vioscreen_magnes
440.33052230000004
vioscreen_maltitol
0.0
vioscreen_maltose
3.6273146539999996
vioscreen_mangan
5.111233479
vioscreen_mannitol
0.661232977
vioscreen_methhis3
16.71364378
vioscreen_methion
2.629013772
vioscreen_mfa141
0.155123295
vioscreen_mfa161
1.799259886
vioscreen_mfa181
39.54076948
vioscreen_mfa201
0.35164381100000003
vioscreen_mfa221
0.027643836
vioscreen_mfatot
42.26898009
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.48868726
vioscreen_nccglbr
267.50982450000004
vioscreen_nccglgr
187.1380351
vioscreen_niacin
34.33361515
vioscreen_niacineq
56.89985552
vioscreen_nitrogen
19.43161387
vioscreen_non_fried_fish_servings
3.3965400000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.807533578
vioscreen_oxalic
206.32953769999997
vioscreen_oxalicm
236.0741224
vioscreen_pantothe
9.741069804
vioscreen_pectins
4.485149896
vioscreen_pfa182
21.2045457
vioscreen_pfa183
2.563972201
vioscreen_pfa184
0.007123287
vioscreen_pfa204
0.13769863599999999
vioscreen_pfa205
0.059041089000000005
vioscreen_pfa225
0.027479454
vioscreen_pfa226
0.150767109
vioscreen_pfatot
24.25339523
vioscreen_phenylal
5.351123381
vioscreen_phosphor
1955.396062
vioscreen_phytic
938.052911
vioscreen_pinitol
0.004739726
vioscreen_potass
4485.62637
vioscreen_procdate
10/28/15
vioscreen_proline
8.572219472
vioscreen_protanim
73.16186323
vioscreen_protein
119.2537564
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
46.08706657
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
482.0
vioscreen_retinol
991.7336472999999
vioscreen_rgrain
9.083834546
vioscreen_ribofla
3.7251775869999997
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.2407700000000002
vioscreen_satoco
7.265753425
vioscreen_selenium
190.8613014
vioscreen_serine
5.573807724
vioscreen_sfa100
2.014740074
vioscreen_sfa120
2.640109295
vioscreen_sfa140
7.2127688889999995
vioscreen_sfa160
29.21353007
vioscreen_sfa170
0.38531519200000003
vioscreen_sfa180
13.66986168
vioscreen_sfa200
0.250493172
vioscreen_sfa220
0.19449316600000002
vioscreen_sfa40
2.485835496
vioscreen_sfa60
1.482191614
vioscreen_sfa80
0.999616565
vioscreen_sfatot
61.176803299999996
vioscreen_sodium
5019.857534000001
vioscreen_sorbitol
1.315561707
vioscreen_srvid
18501.0
vioscreen_starch
157.3730522
vioscreen_started
4/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
60.16958476
vioscreen_sweet_servings
1.21096
vioscreen_tagatose
4.401972521999999
vioscreen_tfa161t
0.104821913
vioscreen_tfa181t
4.179233332
vioscreen_tfa182t
0.71832869
vioscreen_tgrain
10.51501298
vioscreen_thiamin
2.767343181
vioscreen_threonin
4.553973138
vioscreen_time
14.0
vioscreen_totaltfa
5.126410999
vioscreen_totcla
0.423342519
vioscreen_totfolat
650.3421232999999
vioscreen_totsugar
142.9121147
vioscreen_tryptoph
1.353534103
vioscreen_tyrosine
4.173972603
vioscreen_user_id
18501.0
vioscreen_v_drkgr
0.19090411
vioscreen_v_orange
0.151671235
vioscreen_v_other
1.020273956
vioscreen_v_potato
0.574876676
vioscreen_v_starcy
0.49134245600000004
vioscreen_v_tomato
0.458958958
vioscreen_v_total
2.8878076839999998
vioscreen_valine
6.171425514
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.7
vioscreen_visit
1.0
vioscreen_vita_iu
9409.413698999999
vioscreen_vita_rae
1297.016438
vioscreen_vita_re
1602.297432
vioscreen_vitb12
7.552466155
vioscreen_vitb6
2.780493331
vioscreen_vitc
176.4965432
vioscreen_vitd
11.33046607
vioscreen_vitd2
0.003945206
vioscreen_vitd3
11.32660263
vioscreen_vitd_iu
453.218643
vioscreen_vite_iu
22.85249358
vioscreen_vitk
136.2424229
vioscreen_water
3732.091781
vioscreen_weight
Not provided
vioscreen_wgrain
1.4312327759999999
vioscreen_whole_grain_servings
1.58485
vioscreen_xylitol
0.020356168
vioscreen_zinc
15.08986248
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
79.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)