American Gut Project; 10317.000020661
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632941
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020661
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
45.0
age_corrected
45.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20661
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1970.0
bmi
44.64
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-26
collection month
May
collection season
Spring
collection time
06:40
collection_timestamp
2015-05-26 06:40
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
14.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
b3dcc2849313f827ba6157db313dae15cb3089abb813ea91a7fefea85ee8617ec31053ff3913622b8b070e0da26062907bdf91196d6f255b86446fa858f32d60
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
51.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
1.3
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Yes
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000020661
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
c3b21c7ca7409efb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.4935068630000001
vioscreen_a_cal
189.5774615
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
15.68452082
vioscreen_addsugar
73.04944884
vioscreen_adsugtot
68.06311537
vioscreen_age
215.0
vioscreen_alanine
15.11038634
vioscreen_alcohol
23.18805383
vioscreen_alcohol_servings
1.4935100000000001
vioscreen_alphacar
2270.2582190000003
vioscreen_alphtoce
36.203125
vioscreen_alphtoco
30.22383348
vioscreen_arginine
17.57211045
vioscreen_ash
58.28656892
vioscreen_aspartam
0.0
vioscreen_aspartic
28.79959065
vioscreen_avcarb
435.696875
vioscreen_bcodeid
Not provided
vioscreen_betacar
10985.28562
vioscreen_betacryp
140.9053617
vioscreen_betaine
263.5708048
vioscreen_betatoco
1.5727122690000002
vioscreen_biochana
0.022876711
vioscreen_bmi
Not provided
vioscreen_caffeine
128.85367079999997
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
6.2254
vioscreen_calcium_servings
9.81723
vioscreen_calories
5672.455822
vioscreen_carbo
490.16207189999994
vioscreen_cholest
908.1207191999999
vioscreen_choline
1128.801627
vioscreen_clac9t11
0.322657546
vioscreen_clat10c12
0.071424662
vioscreen_copper
3.860247217
vioscreen_coumest
0.063095892
vioscreen_cystine
3.6086853860000003
vioscreen_d_cheese
3.1901096289999997
vioscreen_d_milk
2.2452329030000002
vioscreen_d_tot_soym
6.225397313999999
vioscreen_d_total
6.225397313999999
vioscreen_d_yogurt
0.7832603140000001
vioscreen_daidzein
0.82046584
vioscreen_database
NDSR - V44
vioscreen_delttoco
9.448547865
vioscreen_discfat_oil
75.14198416
vioscreen_discfat_sol
126.8523223
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0000822
vioscreen_f_citmlb
1.378876736
vioscreen_f_nj_citmlb
1.3635616769999999
vioscreen_f_nj_other
0.756657514
vioscreen_f_nj_total
2.120219191
vioscreen_f_other
0.756657514
vioscreen_f_total
2.135534166
vioscreen_fat
266.4428724
vioscreen_fiber
54.43051691
vioscreen_fibh2o
14.47654645
vioscreen_fibinso
39.89684825
vioscreen_finished
5/25/15
vioscreen_fish_servings
8.39173
vioscreen_fol_deqv
939.1531677999999
vioscreen_fol_nat
648.3412243
vioscreen_fol_syn
170.8826841
vioscreen_formontn
0.004767123
vioscreen_fried_fish_servings
2.38231
vioscreen_fried_food_servings
3.16986
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.3
vioscreen_fructose
26.472268300000003
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
8.401179232999999
vioscreen_g_total
11.20249625
vioscreen_g_whl
2.801342773
vioscreen_galactos
1.43402735
vioscreen_gammtoco
52.54874251
vioscreen_gender
false
vioscreen_genistn
0.9392328129999999
vioscreen_glac
199.0112158
vioscreen_gltc
219.96770120000002
vioscreen_glucose
28.63983305
vioscreen_glutamic
55.25208155
vioscreen_glycine
13.69432657
vioscreen_glycitn
0.43671231200000005
vioscreen_grams
6516.336986
vioscreen_hei2010_dairy
8.4
vioscreen_hei2010_empty_calories
16.3
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
2.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.7
vioscreen_hei2010_whole_grains
3.3
vioscreen_hei_drk_g_org_veg_leg
3.6
vioscreen_hei_fruit
2.4
vioscreen_hei_grains
3.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.4
vioscreen_hei_non_juice_frt
4.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.8
vioscreen_hei_score
66.9
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
14.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.6
vioscreen_height
Not provided
vioscreen_histidin
8.670327215
vioscreen_inositol
0.373671231
vioscreen_iron
32.63402718
vioscreen_isoleuc
14.42679527
vioscreen_isomalt
0.0
vioscreen_joules
23733.54795
vioscreen_juice_servings
0.030680000000000002
vioscreen_lactitol
0.0
vioscreen_lactose
42.64200021
vioscreen_legumes
0.417808303
vioscreen_leucine
23.92512307
vioscreen_line_gi
963.2925514000001
vioscreen_low_fat_dairy_serving
2.77759
vioscreen_lutzeax
9915.526712
vioscreen_lycopene
13151.22466
vioscreen_lysine
22.63695955
vioscreen_m_egg
1.1206574740000002
vioscreen_m_fish_hi
1.554246709
vioscreen_m_fish_lo
3.2404109589999996
vioscreen_m_frank
0.744301323
vioscreen_m_meat
4.866630659
vioscreen_m_mpf
21.46599957
vioscreen_m_nutsd
4.357534247
vioscreen_m_organ
0.0
vioscreen_m_poult
11.06065791
vioscreen_m_soy
0.019945206
vioscreen_magnes
954.3816780999999
vioscreen_maltitol
0.0
vioscreen_maltose
3.040328352
vioscreen_mangan
8.651040775
vioscreen_mannitol
0.6285479820000001
vioscreen_methhis3
77.21419628
vioscreen_methion
7.445012842000001
vioscreen_mfa141
0.389232855
vioscreen_mfa161
4.320026889
vioscreen_mfa181
94.52496789
vioscreen_mfa201
1.196054955
vioscreen_mfa221
0.208657565
vioscreen_mfatot
101.47315920000001
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
30.22383348
vioscreen_nccglbr
340.9643622
vioscreen_nccglgr
238.5110017
vioscreen_niacin
77.08969927
vioscreen_niacineq
134.8138164
vioscreen_nitrogen
49.46363442
vioscreen_non_fried_fish_servings
6.0094199999999995
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
5.663617027000001
vioscreen_oxalic
588.7045805
vioscreen_oxalicm
587.8619007
vioscreen_pantothe
15.58843911
vioscreen_pectins
9.372658257000001
vioscreen_pfa182
50.71502033
vioscreen_pfa183
4.575890277
vioscreen_pfa184
0.05569863
vioscreen_pfa204
0.611589071
vioscreen_pfa205
0.264274012
vioscreen_pfa225
0.159643826
vioscreen_pfa226
0.612602715
vioscreen_pfatot
57.40912885
vioscreen_phenylal
13.32073924
vioscreen_phosphor
4381.522945000001
vioscreen_phytic
1664.795377
vioscreen_pinitol
0.006520547
vioscreen_potass
8516.678767
vioscreen_procdate
10/28/15
vioscreen_proline
18.20605736
vioscreen_protanim
237.2388485
vioscreen_protein
306.0334332
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
68.78393087
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
427.0
vioscreen_retinol
1037.448288
vioscreen_rgrain
7.7692055060000005
vioscreen_ribofla
4.795807804
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.0636200000000002
vioscreen_satoco
0.0
vioscreen_selenium
392.9500428
vioscreen_serine
13.72350706
vioscreen_sfa100
1.5269315540000001
vioscreen_sfa120
2.474959031
vioscreen_sfa140
7.299918397000001
vioscreen_sfa160
45.50222068
vioscreen_sfa170
0.39380819200000006
vioscreen_sfa180
19.51841021
vioscreen_sfa200
0.681205394
vioscreen_sfa220
0.8145479390000001
vioscreen_sfa40
1.8164385230000002
vioscreen_sfa60
0.935452145
vioscreen_sfa80
0.735616438
vioscreen_sfatot
83.5513217
vioscreen_sodium
11039.3411
vioscreen_sorbitol
0.258027419
vioscreen_srvid
18755.0
vioscreen_starch
227.22816780000002
vioscreen_started
5/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
67.4716128
vioscreen_sweet_servings
1.2383600000000001
vioscreen_tagatose
6.732685413
vioscreen_tfa161t
0.183315079
vioscreen_tfa181t
9.925616037000001
vioscreen_tfa182t
1.3296164320000001
vioscreen_tgrain
11.30482261
vioscreen_thiamin
3.486985298
vioscreen_threonin
12.10402665
vioscreen_time
23.0
vioscreen_totaltfa
11.53758963
vioscreen_totcla
0.39652053600000003
vioscreen_totfolat
819.2231164
vioscreen_totsugar
172.1436537
vioscreen_tryptoph
3.465287885
vioscreen_tyrosine
10.96791658
vioscreen_user_id
18755.0
vioscreen_v_drkgr
0.792356225
vioscreen_v_orange
0.428657594
vioscreen_v_other
2.3286577619999997
vioscreen_v_potato
2.5401094619999998
vioscreen_v_starcy
0.286849307
vioscreen_v_tomato
1.090383535
vioscreen_v_total
7.467123288
vioscreen_valine
15.98098379
vioscreen_veg5_day
8.5
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
14.9
vioscreen_visit
1.0
vioscreen_vita_iu
23775.14247
vioscreen_vita_rae
2053.3556510000003
vioscreen_vita_re
3069.2602739999998
vioscreen_vitb12
15.69783551
vioscreen_vitb6
6.128056106
vioscreen_vitc
267.04678939999997
vioscreen_vitd
20.91435413
vioscreen_vitd2
0.003369863
vioscreen_vitd3
20.91106726
vioscreen_vitd_iu
836.5741652
vioscreen_vite_iu
45.07636451
vioscreen_vitk
531.7248288
vioscreen_water
5511.081164
vioscreen_weight
Not provided
vioscreen_wgrain
3.5355890139999997
vioscreen_whole_grain_servings
2.80134
vioscreen_xylitol
0.11013697800000001
vioscreen_zinc
38.46978275
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
129.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)