American Gut Project; 10317.000001882
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632810
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:26:58Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000001882
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
39.0
age_corrected
39.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000001882
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1976.0
bmi
24.97
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-25
collection month
May
collection season
Spring
collection time
11:00
collection_timestamp
2015-05-25 11:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
312.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
943692603dd02db5f4dfc533060492a22bb4e9e0a96a483ec3ee6fac2b6602edfe94c18bcc4b0ee1455b5d68f31ab5ebbef879df3010491fbf41bbfc706ca4a2
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
34.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-118.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Daily
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000001882
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
male
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
f83047c5ae5b3a58
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
4.102739726
vioscreen_a_cal
533.5517978999999
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.475315042
vioscreen_addsugar
35.41907106
vioscreen_adsugtot
33.59877194
vioscreen_age
215.0
vioscreen_alanine
8.655834626
vioscreen_alcohol
58.90833155
vioscreen_alcohol_servings
4.10274
vioscreen_alphacar
1689.9366440000001
vioscreen_alphtoce
21.48273892
vioscreen_alphtoco
19.95057122
vioscreen_arginine
9.845919172999999
vioscreen_ash
46.158304799999996
vioscreen_aspartam
0.0
vioscreen_aspartic
15.47345222
vioscreen_avcarb
179.27852099999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
13539.835619999998
vioscreen_betacryp
101.33988659999999
vioscreen_betaine
178.0423266
vioscreen_betatoco
0.36339721700000005
vioscreen_biochana
0.009342465999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
730.0603596
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.9518400000000002
vioscreen_calcium_servings
4.07644
vioscreen_calories
3633.870548
vioscreen_carbo
210.55783390000002
vioscreen_cholest
851.6909247000001
vioscreen_choline
969.5056507000002
vioscreen_clac9t11
0.38972602700000003
vioscreen_clat10c12
0.096821929
vioscreen_copper
3.127589563
vioscreen_coumest
0.48049312200000005
vioscreen_cystine
1.944054674
vioscreen_d_cheese
0.45594524200000003
vioscreen_d_milk
0.995945175
vioscreen_d_tot_soym
1.95183557
vioscreen_d_total
1.95183557
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.707863
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.762082285
vioscreen_discfat_oil
64.51282641
vioscreen_discfat_sol
88.77468429
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.9289315840000001
vioscreen_f_nj_citmlb
0.91923293
vioscreen_f_nj_other
0.315643854
vioscreen_f_nj_total
1.234876742
vioscreen_f_other
0.315643854
vioscreen_f_total
1.24460282
vioscreen_fat
199.23724319999997
vioscreen_fiber
31.28068279
vioscreen_fibh2o
12.84520548
vioscreen_fibinso
18.54287645
vioscreen_finished
5/25/15
vioscreen_fish_servings
5.697690000000001
vioscreen_fol_deqv
620.6954622999999
vioscreen_fol_nat
559.722988
vioscreen_fol_syn
35.83019317
vioscreen_formontn
0.00169863
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.5
vioscreen_fructose
14.70665668
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.854081831
vioscreen_g_total
1.904547704
vioscreen_g_whl
0.050493152
vioscreen_galactos
0.9324931940000001
vioscreen_gammtoco
13.60643729
vioscreen_gender
false
vioscreen_genistn
0.420356186
vioscreen_glac
70.98880030000001
vioscreen_gltc
76.99078553
vioscreen_glucose
17.25563998
vioscreen_glutamic
26.83923373
vioscreen_glycine
7.943286467
vioscreen_glycitn
0.061232873
vioscreen_grams
6583.886301
vioscreen_hei2010_dairy
4.1
vioscreen_hei2010_empty_calories
12.2
vioscreen_hei2010_fatty_acids
4.4
vioscreen_hei2010_fruit
2.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
57.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.2
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.1
vioscreen_hei_grains
0.9
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.1
vioscreen_hei_non_juice_frt
4.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
47.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
6.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
4.61791825
vioscreen_inositol
0.197917802
vioscreen_iron
17.85495773
vioscreen_isoleuc
7.3623013429999995
vioscreen_isomalt
0.0
vioscreen_joules
15204.123290000001
vioscreen_juice_servings
0.01945
vioscreen_lactitol
0.0
vioscreen_lactose
20.24758936
vioscreen_legumes
0.022849315
vioscreen_leucine
12.52306962
vioscreen_line_gi
429.0117295
vioscreen_low_fat_dairy_serving
0.54468
vioscreen_lutzeax
11696.21918
vioscreen_lycopene
4371.557192
vioscreen_lysine
12.30668477
vioscreen_m_egg
1.538438269
vioscreen_m_fish_hi
1.235315109
vioscreen_m_fish_lo
2.011698684
vioscreen_m_frank
1.202191747
vioscreen_m_meat
6.439013672000001
vioscreen_m_mpf
13.90260328
vioscreen_m_nutsd
1.77769859
vioscreen_m_organ
0.586547935
vioscreen_m_poult
2.427917815
vioscreen_m_soy
0.009835616
vioscreen_magnes
528.0971317999999
vioscreen_maltitol
0.0
vioscreen_maltose
1.870246615
vioscreen_mangan
4.87726014
vioscreen_mannitol
0.283260293
vioscreen_methhis3
46.19720676
vioscreen_methion
3.945370692
vioscreen_mfa141
0.31147945899999996
vioscreen_mfa161
4.005781451
vioscreen_mfa181
79.0460884
vioscreen_mfa201
0.9448219609999999
vioscreen_mfa221
0.19682190800000002
vioscreen_mfatot
85.03175835
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
19.95057122
vioscreen_nccglbr
111.52119009999998
vioscreen_nccglgr
78.01299765
vioscreen_niacin
43.84882277
vioscreen_niacineq
71.36558754
vioscreen_nitrogen
26.40169628
vioscreen_non_fried_fish_servings
5.697690000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
4.051808982
vioscreen_oxalic
542.5105736
vioscreen_oxalicm
559.8943065000001
vioscreen_pantothe
13.81967171
vioscreen_pectins
5.48032862
vioscreen_pfa182
26.9408765
vioscreen_pfa183
3.297124492
vioscreen_pfa184
0.045315065999999994
vioscreen_pfa204
0.420931505
vioscreen_pfa205
0.205917818
vioscreen_pfa225
0.084356167
vioscreen_pfa226
0.420164385
vioscreen_pfatot
31.70265679
vioscreen_phenylal
6.83232957
vioscreen_phosphor
2293.986986
vioscreen_phytic
538.1117295
vioscreen_pinitol
0.004821918
vioscreen_potass
5663.166096
vioscreen_procdate
10/28/15
vioscreen_proline
8.842055731
vioscreen_protanim
133.03844180000002
vioscreen_protein
163.545366
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.50104078
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
428.0
vioscreen_retinol
1672.565582
vioscreen_rgrain
1.5740000269999999
vioscreen_ribofla
4.4197807419999995
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.79729
vioscreen_satoco
0.0
vioscreen_selenium
214.859375
vioscreen_serine
7.136027799
vioscreen_sfa100
1.1652054459999999
vioscreen_sfa120
1.2597535020000001
vioscreen_sfa140
5.276109
vioscreen_sfa160
37.21624037
vioscreen_sfa170
0.37720537600000004
vioscreen_sfa180
16.33635488
vioscreen_sfa200
0.422136991
vioscreen_sfa220
0.39364381600000004
vioscreen_sfa40
1.3604384330000001
vioscreen_sfa60
0.8395615670000001
vioscreen_sfa80
0.577753396
vioscreen_sfatot
65.83947988
vioscreen_sodium
9241.543836
vioscreen_sorbitol
0.711095941
vioscreen_srvid
18754.0
vioscreen_starch
45.49415668
vioscreen_started
5/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.29473994
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
5.050356178
vioscreen_tfa161t
0.144712328
vioscreen_tfa181t
3.81646578
vioscreen_tfa182t
0.7359451920000001
vioscreen_tgrain
1.8332875709999998
vioscreen_thiamin
1.916739519
vioscreen_threonin
6.465150096
vioscreen_time
16.0
vioscreen_totaltfa
4.813151153
vioscreen_totcla
0.484986397
vioscreen_totfolat
595.5531678
vioscreen_totsugar
87.50162136
vioscreen_tryptoph
1.65150715
vioscreen_tyrosine
5.638192289
vioscreen_user_id
18754.0
vioscreen_v_drkgr
1.123643849
vioscreen_v_orange
0.539123284
vioscreen_v_other
1.6544110859999999
vioscreen_v_potato
0.426821899
vioscreen_v_starcy
0.025808219
vioscreen_v_tomato
0.314027405
vioscreen_v_total
4.083889729
vioscreen_valine
8.297561938
vioscreen_veg5_day
6.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
8.2
vioscreen_visit
1.0
vioscreen_vita_iu
29634.20822
vioscreen_vita_rae
2875.5243149999997
vioscreen_vita_re
4078.480822
vioscreen_vitb12
17.85983653
vioscreen_vitb6
3.780905528
vioscreen_vitc
212.42671230000002
vioscreen_vitd
13.29964282
vioscreen_vitd2
0.0020273970000000002
vioscreen_vitd3
13.29764287
vioscreen_vitd_iu
531.9857128000001
vioscreen_vite_iu
29.69405768
vioscreen_vitk
579.4668236
vioscreen_water
5954.223973
vioscreen_weight
Not provided
vioscreen_wgrain
0.25931509399999997
vioscreen_whole_grain_servings
0.05049
vioscreen_xylitol
0.07156164599999999
vioscreen_zinc
22.43781036
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
78.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)