American Gut Project; 10317.000031269
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634275
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031269
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031269
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1958.0
bmi
24.89
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-16
collection month
August
collection season
Summer
collection time
08:20
collection_timestamp
2015-08-16 08:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
4.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
aecb7fd7278f9c7691f2f1fa3cdadd7d66a8a3d3a889f66d2c1b3b9474efc2661270c2df780a1608f68a0af809178a4fdffb6aa9859f4bb3f10f1bc90659f88a
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-72.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031269
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b26b24525dd4ee8d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.7831781259999999
vioscreen_a_cal
97.70663527
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.092492843
vioscreen_addsugar
15.25810948
vioscreen_adsugtot
13.90621923
vioscreen_age
215.0
vioscreen_alanine
3.87043758
vioscreen_alcohol
11.81260301
vioscreen_alcohol_servings
0.78318
vioscreen_alphacar
759.3361301
vioscreen_alphtoce
11.81704035
vioscreen_alphtoco
10.73495893
vioscreen_arginine
4.767506889
vioscreen_ash
14.97380672
vioscreen_aspartam
0.0
vioscreen_aspartic
6.952137067000001
vioscreen_avcarb
85.72554581
vioscreen_bcodeid
Not provided
vioscreen_betacar
8143.282192000001
vioscreen_betacryp
43.81596747
vioscreen_betaine
96.47231378
vioscreen_betatoco
0.361835595
vioscreen_biochana
0.0052602740000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
245.4391909
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
0.21386
vioscreen_calcium_servings
1.33225
vioscreen_calories
1432.806421
vioscreen_carbo
103.6462436
vioscreen_cholest
240.73747859999997
vioscreen_choline
327.4751284
vioscreen_clac9t11
0.086054794
vioscreen_clat10c12
0.025561643999999998
vioscreen_copper
1.0285754059999999
vioscreen_coumest
0.212219176
vioscreen_cystine
0.90969857
vioscreen_d_cheese
0.15057534
vioscreen_d_milk
0.063287667
vioscreen_d_tot_soym
0.213863028
vioscreen_d_total
0.213863028
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.24534247399999998
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.54490415
vioscreen_discfat_oil
34.19197078
vioscreen_discfat_sol
20.23106807
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.212465741
vioscreen_f_nj_citmlb
0.20969861199999998
vioscreen_f_nj_other
0.098054797
vioscreen_f_nj_total
0.30775343
vioscreen_f_other
0.098054797
vioscreen_f_total
0.310520559
vioscreen_fat
75.08287671
vioscreen_fiber
17.92027638
vioscreen_fibh2o
5.578767792000001
vioscreen_fibinso
12.33627194
vioscreen_finished
8/5/15
vioscreen_fish_servings
1.45346
vioscreen_fol_deqv
292.57604879999997
vioscreen_fol_nat
241.0033176
vioscreen_fol_syn
30.33585991
vioscreen_formontn
0.001616438
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.6
vioscreen_fructose
6.754465432000001
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.389534227
vioscreen_g_total
2.603561778
vioscreen_g_whl
1.214027467
vioscreen_galactos
0.127616443
vioscreen_gammtoco
9.232027237
vioscreen_gender
false
vioscreen_genistn
0.180164369
vioscreen_glac
38.64887896
vioscreen_gltc
43.46525846
vioscreen_glucose
6.848601375
vioscreen_glutamic
12.59172464
vioscreen_glycine
3.6301092280000002
vioscreen_glycitn
0.016136986000000002
vioscreen_grams
2204.103425
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.5
vioscreen_hei2010_fruit
1.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
73.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.7
vioscreen_hei2010_whole_grains
5.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.4
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
2.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.7
vioscreen_hei_score
64.9
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
17.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.8
vioscreen_height
Not provided
vioscreen_histidin
2.088876719
vioscreen_inositol
0.08731507599999999
vioscreen_iron
9.393426263
vioscreen_isoleuc
3.224822413
vioscreen_isomalt
0.0
vioscreen_joules
5994.8630140000005
vioscreen_juice_servings
0.005529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
1.1927945070000001
vioscreen_legumes
0.055589049
vioscreen_leucine
5.472465954
vioscreen_line_gi
210.19265840000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
8445.206849
vioscreen_lycopene
2014.332877
vioscreen_lysine
5.173643515
vioscreen_m_egg
0.312219176
vioscreen_m_fish_hi
0.610931522
vioscreen_m_fish_lo
0.217342471
vioscreen_m_frank
0.03361644
vioscreen_m_meat
2.8788223060000004
vioscreen_m_mpf
5.721533872
vioscreen_m_nutsd
2.19306858
vioscreen_m_organ
0.0
vioscreen_m_poult
1.980849175
vioscreen_m_soy
0.0016712329999999998
vioscreen_magnes
271.12906680000003
vioscreen_maltitol
0.0
vioscreen_maltose
1.379753385
vioscreen_mangan
2.971014153
vioscreen_mannitol
0.129342474
vioscreen_methhis3
23.35833155
vioscreen_methion
1.682054661
vioscreen_mfa141
0.099753414
vioscreen_mfa161
0.9982194459999999
vioscreen_mfa181
27.28487532
vioscreen_mfa201
0.482684911
vioscreen_mfa221
0.13649315
vioscreen_mfatot
29.18265732
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.73495893
vioscreen_nccglbr
67.56016159999999
vioscreen_nccglgr
47.25867937
vioscreen_niacin
22.13282454
vioscreen_niacineq
34.54021565
vioscreen_nitrogen
12.11282106
vioscreen_non_fried_fish_servings
1.45346
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.2483558969999997
vioscreen_oxalic
251.87427230000003
vioscreen_oxalicm
269.77378
vioscreen_pantothe
5.00452028
vioscreen_pectins
2.477670999
vioscreen_pfa182
17.48112291
vioscreen_pfa183
1.872191714
vioscreen_pfa184
0.027315068999999997
vioscreen_pfa204
0.157424665
vioscreen_pfa205
0.095671238
vioscreen_pfa225
0.052931510999999994
vioscreen_pfa226
0.201068512
vioscreen_pfatot
19.949426100000004
vioscreen_phenylal
3.053177507
vioscreen_phosphor
962.8836472999999
vioscreen_phytic
569.6938784
vioscreen_pinitol
0.0013698629999999998
vioscreen_potass
2328.969692
vioscreen_procdate
10/28/15
vioscreen_proline
3.678821971
vioscreen_protanim
51.39849101
vioscreen_protein
73.95938035
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
22.56282106
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
232.0
vioscreen_retinol
137.66630990000002
vioscreen_rgrain
1.194109522
vioscreen_ribofla
1.4094795119999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.07775
vioscreen_satoco
0.0
vioscreen_selenium
102.9279003
vioscreen_serine
3.159643889
vioscreen_sfa100
0.271863023
vioscreen_sfa120
0.39906846100000004
vioscreen_sfa140
1.437506856
vioscreen_sfa160
11.38356298
vioscreen_sfa170
0.092410958
vioscreen_sfa180
4.987233786
vioscreen_sfa200
0.261835595
vioscreen_sfa220
0.403041056
vioscreen_sfa40
0.316520586
vioscreen_sfa60
0.178493155
vioscreen_sfa80
0.12386302199999999
vioscreen_sfatot
20.20035718
vioscreen_sodium
2487.686473
vioscreen_sorbitol
0.145698631
vioscreen_srvid
20324.0
vioscreen_starch
45.32810895
vioscreen_started
8/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.57706951
vioscreen_sweet_servings
0.26871
vioscreen_tagatose
0.399479445
vioscreen_tfa161t
0.051479449000000004
vioscreen_tfa181t
1.1280273440000002
vioscreen_tfa182t
0.283726042
vioscreen_tgrain
2.673315095
vioscreen_thiamin
0.988164363
vioscreen_threonin
2.81997271
vioscreen_time
47.0
vioscreen_totaltfa
1.5188219040000002
vioscreen_totcla
0.11180822300000001
vioscreen_totfolat
271.33904110000003
vioscreen_totsugar
29.85219125
vioscreen_tryptoph
0.7444110190000001
vioscreen_tyrosine
2.428301082
vioscreen_user_id
20324.0
vioscreen_v_drkgr
0.798410912
vioscreen_v_orange
0.216821916
vioscreen_v_other
0.9258082559999999
vioscreen_v_potato
0.22750683100000002
vioscreen_v_starcy
0.14698630599999998
vioscreen_v_tomato
0.173972603
vioscreen_v_total
2.489396939
vioscreen_valine
3.529396872
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
14700.55479
vioscreen_vita_rae
849.7379281
vioscreen_vita_re
1561.809075
vioscreen_vitb12
3.2959175010000004
vioscreen_vitb6
1.6629317609999998
vioscreen_vitc
65.83092359
vioscreen_vitd
3.803041725
vioscreen_vitd2
0.000876712
vioscreen_vitd3
3.802165159
vioscreen_vitd_iu
152.121669
vioscreen_vite_iu
15.98745184
vioscreen_vitk
416.3128425
vioscreen_water
1938.29863
vioscreen_weight
Not provided
vioscreen_wgrain
1.4792055730000002
vioscreen_whole_grain_servings
1.21403
vioscreen_xylitol
0.028821918999999998
vioscreen_zinc
10.08134431
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)