American Gut Project; 10317.000023912
human oral metagenome
American Gut Project Mouth Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633104
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023912
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23912
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1951.0
bmi
23.96
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:oral cavity
body product
UBERON:saliva
body site
UBERON:tongue
bowel_movement_frequency
Five or more
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/12/2015
collection month
April
collection season
Spring
collection time
16:35
collection_timestamp
2015-04-12 16:35
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
421.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-oral
env_material
saliva
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
4f99fd96f6f7245babd8c7a528afc2c3aa41bb397629e6e5324011bd7201d5b245080dcd0a51e3630bbb0dbac0690155283fbcb79c8fa02484ef8382216f9a0d
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
Not provided
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
48.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.4
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023912
sample type
Mouth
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
1e1d40e6cd09c45d
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0530137
vioscreen_a_cal
6.373205399
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.161096024
vioscreen_addsugar
37.19742081
vioscreen_adsugtot
35.23454891
vioscreen_age
215.0
vioscreen_alanine
5.24906959
vioscreen_alcohol
0.806849315
vioscreen_alcohol_servings
0.05301
vioscreen_alphacar
6940.776027
vioscreen_alphtoce
36.96273812
vioscreen_alphtoco
34.63234964
vioscreen_arginine
8.228794547
vioscreen_ash
31.79975385
vioscreen_aspartam
0.0
vioscreen_aspartic
11.95120532
vioscreen_avcarb
257.4022902
vioscreen_bcodeid
Not provided
vioscreen_betacar
32737.63288
vioscreen_betacryp
796.1232877
vioscreen_betaine
137.77111519999997
vioscreen_betatoco
1.174219084
vioscreen_biochana
0.017534246
vioscreen_bmi
Not provided
vioscreen_caffeine
268.397667
vioscreen_calcium
true
vioscreen_calcium_avg
250.0
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.16863
vioscreen_calcium_servings
2.81778
vioscreen_calories
2864.8321920000003
vioscreen_carbo
314.2377783
vioscreen_cholest
208.66637409999998
vioscreen_choline
495.3971318
vioscreen_clac9t11
0.067863015
vioscreen_clat10c12
0.028438354
vioscreen_copper
3.3913701310000004
vioscreen_coumest
0.016465754
vioscreen_cystine
1.401041026
vioscreen_d_cheese
0.035342467
vioscreen_d_milk
0.116794513
vioscreen_d_tot_soym
0.168630145
vioscreen_d_total
0.168630145
vioscreen_d_yogurt
0.016438356
vioscreen_daidzein
0.302191747
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.392109241
vioscreen_discfat_oil
82.43514555
vioscreen_discfat_sol
15.65887602
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.007013699
vioscreen_f_citmlb
1.3123835320000001
vioscreen_f_nj_citmlb
1.296219165
vioscreen_f_nj_other
2.506876572
vioscreen_f_nj_total
3.8031226589999996
vioscreen_f_other
2.514410818
vioscreen_f_total
3.8268213560000004
vioscreen_fat
148.9276648
vioscreen_fiber
56.83187072
vioscreen_fibh2o
13.23553484
vioscreen_fibinso
43.69106646
vioscreen_finished
2/27/15
vioscreen_fish_servings
3.2046200000000002
vioscreen_fol_deqv
785.9813356000001
vioscreen_fol_nat
742.7031678
vioscreen_fol_syn
25.46320634
vioscreen_formontn
0.007342466
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
6.0
vioscreen_frtsumm
7.7
vioscreen_fructose
55.55287885
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
1.201369947
vioscreen_g_total
2.287589128
vioscreen_g_whl
1.08632871
vioscreen_galactos
0.273232886
vioscreen_gammtoco
18.40331362
vioscreen_gender
false
vioscreen_genistn
0.45819179600000004
vioscreen_glac
103.11270329999999
vioscreen_gltc
117.3975385
vioscreen_glucose
58.15486408
vioscreen_glutamic
19.91537083
vioscreen_glycine
5.335150565
vioscreen_glycitn
0.065835613
vioscreen_grams
6049.906164
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
74.5
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.3
vioscreen_height
Not provided
vioscreen_histidin
2.794766862
vioscreen_inositol
0.342986329
vioscreen_iron
20.218356699999998
vioscreen_isoleuc
4.157122886
vioscreen_isomalt
0.0
vioscreen_joules
11986.44795
vioscreen_juice_servings
0.04734
vioscreen_lactitol
0.0
vioscreen_lactose
2.0660821780000003
vioscreen_legumes
0.085013701
vioscreen_leucine
7.38002729
vioscreen_line_gi
677.4134846
vioscreen_low_fat_dairy_serving
0.01644
vioscreen_lutzeax
18952.71781
vioscreen_lycopene
16498.7
vioscreen_lysine
6.291642363999999
vioscreen_m_egg
0.367835601
vioscreen_m_fish_hi
1.37586302
vioscreen_m_fish_lo
0.45041094200000004
vioscreen_m_frank
0.009123286999999999
vioscreen_m_meat
2.769095977
vioscreen_m_mpf
5.199259886
vioscreen_m_nutsd
8.780931614
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5947945370000001
vioscreen_m_soy
0.004109589
vioscreen_magnes
736.2208048
vioscreen_maltitol
0.0
vioscreen_maltose
2.7651230069999997
vioscreen_mangan
10.67808286
vioscreen_mannitol
0.909945135
vioscreen_methhis3
20.03315095
vioscreen_methion
2.025342466
vioscreen_mfa141
0.086684935
vioscreen_mfa161
1.64723285
vioscreen_mfa181
66.38396297
vioscreen_mfa201
1.12695881
vioscreen_mfa221
0.255808248
vioscreen_mfatot
69.7252622
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
34.63234964
vioscreen_nccglbr
194.95646399999998
vioscreen_nccglgr
136.3716717
vioscreen_niacin
39.36487318
vioscreen_niacineq
58.74267444
vioscreen_nitrogen
18.23876953
vioscreen_non_fried_fish_servings
3.2046200000000002
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.260631154
vioscreen_oxalic
943.7827911
vioscreen_oxalicm
1057.32988
vioscreen_pantothe
7.954328981000001
vioscreen_pectins
12.44808299
vioscreen_pfa182
34.24202965
vioscreen_pfa183
2.577095763
vioscreen_pfa184
0.056821917
vioscreen_pfa204
0.11315069300000001
vioscreen_pfa205
0.17863015
vioscreen_pfa225
0.074438356
vioscreen_pfa226
0.374410927
vioscreen_pfatot
37.71322774
vioscreen_phenylal
4.686904364
vioscreen_phosphor
1819.70274
vioscreen_phytic
1432.409932
vioscreen_pinitol
0.0038082190000000003
vioscreen_potass
7036.6897260000005
vioscreen_procdate
10/28/15
vioscreen_proline
5.20062908
vioscreen_protanim
45.05430223
vioscreen_protein
108.59325770000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
63.54143301
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
541.0
vioscreen_retinol
144.6259311
vioscreen_rgrain
1.293178109
vioscreen_ribofla
2.151205486
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
8.46118
vioscreen_satoco
0.0
vioscreen_selenium
156.88487800000001
vioscreen_serine
5.110548213
vioscreen_sfa100
0.183945183
vioscreen_sfa120
0.42531504200000003
vioscreen_sfa140
1.2596438890000001
vioscreen_sfa160
19.14966957
vioscreen_sfa170
0.08345206299999999
vioscreen_sfa180
6.949424765
vioscreen_sfa200
0.761150621
vioscreen_sfa220
1.409561784
vioscreen_sfa40
0.19378081
vioscreen_sfa60
0.10219177900000001
vioscreen_sfa80
0.088164384
vioscreen_sfatot
31.29712115
vioscreen_sodium
4659.004452
vioscreen_sorbitol
3.334082366
vioscreen_srvid
17226.0
vioscreen_starch
55.12115261
vioscreen_started
2/27/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.84821543
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.7256163709999999
vioscreen_tfa161t
0.035178083
vioscreen_tfa181t
1.025205513
vioscreen_tfa182t
0.33380820899999997
vioscreen_tgrain
2.299589141
vioscreen_thiamin
1.943972737
vioscreen_threonin
3.942082821
vioscreen_time
26.0
vioscreen_totaltfa
1.40123291
vioscreen_totcla
0.09671232699999999
vioscreen_totfolat
768.1662671
vioscreen_totsugar
164.3005244
vioscreen_tryptoph
1.160520705
vioscreen_tyrosine
3.373259913
vioscreen_user_id
17226.0
vioscreen_v_drkgr
1.336958877
vioscreen_v_orange
1.6181095490000001
vioscreen_v_other
4.446603101
vioscreen_v_potato
0.093095889
vioscreen_v_starcy
0.10556163
vioscreen_v_tomato
1.4373699030000002
vioscreen_v_total
9.038081924
vioscreen_valine
4.7909865289999995
vioscreen_veg5_day
20.2
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
18.1
vioscreen_visit
1.0
vioscreen_vita_iu
61492.91507
vioscreen_vita_rae
3195.132877
vioscreen_vita_re
6245.642465999999
vioscreen_vitb12
4.2491231
vioscreen_vitb6
4.355753023
vioscreen_vitc
576.1956336000001
vioscreen_vitd
7.523863576
vioscreen_vitd2
0.17882190899999997
vioscreen_vitd3
7.3450696970000005
vioscreen_vitd_iu
300.954543
vioscreen_vite_iu
51.68347068
vioscreen_vitk
830.7625
vioscreen_water
5462.4099320000005
vioscreen_weight
Not provided
vioscreen_wgrain
1.006438289
vioscreen_whole_grain_servings
1.08633
vioscreen_xylitol
0.116739707
vioscreen_zinc
15.88520307
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
69.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)