American Gut Project; 10317.000031288
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634283
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031288
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031288
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
31.01
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/06/2015
collection month
August
collection season
Summer
collection time
19:40
collection_timestamp
2015-08-06 19:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
29.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
a80d12f584b383ec51f8893956f917030e2614f33bd4288ac0eddf748030310343af43802dd5e1e447e954376d344d70657f51743d1e058228d3084061084a52
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000031288
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
a5db69366b4ab523
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.222684928
vioscreen_a_cal
25.79753318
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.110684664
vioscreen_addsugar
35.39594392
vioscreen_adsugtot
29.62076734
vioscreen_age
215.0
vioscreen_alanine
1.739890404
vioscreen_alcohol
3.361233144
vioscreen_alcohol_servings
0.22268000000000002
vioscreen_alphacar
199.4328125
vioscreen_alphtoce
6.752740395
vioscreen_alphtoco
5.716986167999999
vioscreen_arginine
1.967671266
vioscreen_ash
12.21221907
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
3.568410879
vioscreen_avcarb
113.21424440000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
4867.6839039999995
vioscreen_betacryp
46.33811537
vioscreen_betaine
76.79815390000002
vioscreen_betatoco
0.249506848
vioscreen_biochana
0.002904109
vioscreen_bmi
Not provided
vioscreen_caffeine
136.94482019999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.38723
vioscreen_calcium_servings
2.80137
vioscreen_calories
1138.87363
vioscreen_carbo
127.7414812
vioscreen_cholest
97.10537243
vioscreen_choline
143.24251930000003
vioscreen_clac9t11
0.061315071
vioscreen_clat10c12
0.009643835
vioscreen_copper
0.770301296
vioscreen_coumest
0.082273974
vioscreen_cystine
0.477726056
vioscreen_d_cheese
0.7483287240000001
vioscreen_d_milk
0.259726036
vioscreen_d_tot_soym
1.3872328669999998
vioscreen_d_total
1.3872328669999998
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
5.233205466
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.9891782160000004
vioscreen_discfat_oil
20.28000187
vioscreen_discfat_sol
27.06076894
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000684932
vioscreen_f_citmlb
0.12797260000000002
vioscreen_f_nj_citmlb
0.127315072
vioscreen_f_nj_other
0.545479385
vioscreen_f_nj_total
0.6727945409999999
vioscreen_f_other
0.545479385
vioscreen_f_total
0.673452048
vioscreen_fat
53.12781464
vioscreen_fiber
14.37317664
vioscreen_fibh2o
4.447178336
vioscreen_fibinso
9.862435119
vioscreen_finished
8/6/15
vioscreen_fish_servings
0.27058000000000004
vioscreen_fol_deqv
336.3072132
vioscreen_fol_nat
165.95041740000002
vioscreen_fol_syn
100.16487590000001
vioscreen_formontn
0.00109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.3
vioscreen_fructose
10.37811029
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
1.793671072
vioscreen_g_total
2.88208175
vioscreen_g_whl
1.0883561640000001
vioscreen_galactos
0.601890334
vioscreen_gammtoco
8.714904618
vioscreen_gender
false
vioscreen_genistn
6.741288527000001
vioscreen_glac
54.23283926
vioscreen_gltc
58.92182684
vioscreen_glucose
10.40216382
vioscreen_glutamic
8.41416417
vioscreen_glycine
1.441506916
vioscreen_glycitn
0.928821971
vioscreen_grams
1715.9537670000002
vioscreen_hei2010_dairy
9.4
vioscreen_hei2010_empty_calories
11.7
vioscreen_hei2010_fatty_acids
3.9
vioscreen_hei2010_fruit
3.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.7
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
7.1
vioscreen_hei_milk
9.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.0
vioscreen_hei_score
66.7
vioscreen_hei_sodium
2.5
vioscreen_hei_sol_fat_alc_add_sug
10.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.2
vioscreen_height
Not provided
vioscreen_histidin
1.0755616909999999
vioscreen_inositol
0.054904107
vioscreen_iron
9.01643635
vioscreen_isoleuc
1.900082439
vioscreen_isomalt
0.0
vioscreen_joules
4765.04726
vioscreen_juice_servings
0.0012900000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
9.153150417
vioscreen_legumes
0.108493147
vioscreen_leucine
3.29915019
vioscreen_line_gi
235.6538741
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
8422.621233
vioscreen_lycopene
2598.998288
vioscreen_lysine
2.62419166
vioscreen_m_egg
0.067397256
vioscreen_m_fish_hi
0.03950685
vioscreen_m_fish_lo
0.114684933
vioscreen_m_frank
0.156301368
vioscreen_m_meat
0.245945196
vioscreen_m_mpf
0.8422466120000001
vioscreen_m_nutsd
0.199643822
vioscreen_m_organ
0.0
vioscreen_m_poult
0.285808218
vioscreen_m_soy
0.480712305
vioscreen_magnes
195.288613
vioscreen_maltitol
0.0
vioscreen_maltose
2.545917835
vioscreen_mangan
2.677369836
vioscreen_mannitol
0.19613699699999998
vioscreen_methhis3
3.0013698630000003
vioscreen_methion
0.851643852
vioscreen_mfa141
0.074794518
vioscreen_mfa161
0.666958869
vioscreen_mfa181
20.41545109
vioscreen_mfa201
0.154356175
vioscreen_mfa221
0.016602741
vioscreen_mfatot
21.54071731
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.687479934
vioscreen_nccglbr
89.25435574
vioscreen_nccglgr
62.43792808
vioscreen_niacin
8.985560921
vioscreen_niacineq
16.643891800000002
vioscreen_nitrogen
6.7533417170000005
vioscreen_non_fried_fish_servings
0.27058000000000004
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.037342479
vioscreen_oxalic
101.4994649
vioscreen_oxalicm
114.08293020000002
vioscreen_pantothe
2.907562005
vioscreen_pectins
2.053835683
vioscreen_pfa182
8.266822292
vioscreen_pfa183
1.004767013
vioscreen_pfa184
0.001643836
vioscreen_pfa204
0.038246573
vioscreen_pfa205
0.007726027
vioscreen_pfa225
0.008328766999999999
vioscreen_pfa226
0.014904111000000001
vioscreen_pfatot
9.385588345
vioscreen_phenylal
1.9302192580000002
vioscreen_phosphor
842.6556507000001
vioscreen_phytic
511.15770549999996
vioscreen_pinitol
0.039726033
vioscreen_potass
1610.67363
vioscreen_procdate
10/28/15
vioscreen_proline
3.216822627
vioscreen_protanim
21.52712436
vioscreen_protein
41.42854506
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.895263
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
222.0
vioscreen_retinol
240.7767551
vioscreen_rgrain
2.247561604
vioscreen_ribofla
1.250411109
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.33247
vioscreen_satoco
0.064684933
vioscreen_selenium
55.45293771
vioscreen_serine
2.071068667
vioscreen_sfa100
0.45591786
vioscreen_sfa120
0.82876704
vioscreen_sfa140
1.956410865
vioscreen_sfa160
9.405041337
vioscreen_sfa170
0.07983561
vioscreen_sfa180
3.8726572530000003
vioscreen_sfa200
0.108739722
vioscreen_sfa220
0.081589053
vioscreen_sfa40
0.500438366
vioscreen_sfa60
0.279726044
vioscreen_sfa80
0.23506850199999998
vioscreen_sfatot
18.16643969
vioscreen_sodium
1958.2208899999998
vioscreen_sorbitol
0.483835633
vioscreen_srvid
20344.0
vioscreen_starch
46.10394906
vioscreen_started
8/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.10336847
vioscreen_sweet_servings
0.31048000000000003
vioscreen_tagatose
3.04810975
vioscreen_tfa161t
0.054575343
vioscreen_tfa181t
1.482739759
vioscreen_tfa182t
0.2932877
vioscreen_tgrain
3.4213974210000004
vioscreen_thiamin
0.8291781490000001
vioscreen_threonin
1.521534039
vioscreen_time
32.0
vioscreen_totaltfa
1.8768492819999998
vioscreen_totcla
0.07106849999999999
vioscreen_totfolat
266.1148116
vioscreen_totsugar
55.95786601
vioscreen_tryptoph
0.46016436
vioscreen_tyrosine
1.5329312259999999
vioscreen_user_id
20344.0
vioscreen_v_drkgr
0.595999982
vioscreen_v_orange
0.033890411
vioscreen_v_other
0.6149589639999999
vioscreen_v_potato
0.01769863
vioscreen_v_starcy
0.0010136989999999999
vioscreen_v_tomato
0.18783561
vioscreen_v_total
1.451424544
vioscreen_valine
2.267479633
vioscreen_veg5_day
2.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
2.9
vioscreen_visit
1.0
vioscreen_vita_iu
9119.411644
vioscreen_vita_rae
656.6580908
vioscreen_vita_re
1072.538356
vioscreen_vitb12
2.08139732
vioscreen_vitb6
0.866411183
vioscreen_vitc
54.98613549
vioscreen_vitd
2.738575557
vioscreen_vitd2
0.000410959
vioscreen_vitd3
2.738191955
vioscreen_vitd_iu
109.5430223
vioscreen_vite_iu
8.530986462000001
vioscreen_vitk
392.6506849
vioscreen_water
1495.376541
vioscreen_weight
Not provided
vioscreen_wgrain
1.17383565
vioscreen_whole_grain_servings
1.08836
vioscreen_xylitol
0.013671232
vioscreen_zinc
6.298821436
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
95.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)