American Gut Project; 10317.000028175
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633936
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028175
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
35.0
age_corrected
35.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28175
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1980.0
bmi
18.17
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-16
collection month
August
collection season
Summer
collection time
11:10
collection_timestamp
2015-08-16 11:10
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
France
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
9.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
None of the above
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
174.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
208d0c0c7cb993e0f4d9e038b8a23f18f71ed431583c201c05165a89e2293e7be708186f8c2837e667f6616cf7351b937188a1f799ed6ca3f89f8f862086b252
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028175
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
48cbebc66eb65fa4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.30432877199999997
vioscreen_a_cal
38.92975439
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.5767126629999995
vioscreen_addsugar
24.54991974
vioscreen_adsugtot
22.80824593
vioscreen_age
215.0
vioscreen_alanine
1.792959051
vioscreen_alcohol
4.59432858
vioscreen_alcohol_servings
0.30433000000000004
vioscreen_alphacar
458.2382705
vioscreen_alphtoce
9.470576037999999
vioscreen_alphtoco
8.041888511
vioscreen_arginine
2.394437941
vioscreen_ash
13.8307149
vioscreen_aspartam
0.0
vioscreen_aspartic
3.99462991
vioscreen_avcarb
137.3483626
vioscreen_bcodeid
Not provided
vioscreen_betacar
5610.12911
vioscreen_betacryp
98.52054795
vioscreen_betaine
108.5770869
vioscreen_betatoco
0.378684935
vioscreen_biochana
0.011643836999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
81.81492937
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.21033
vioscreen_calcium_servings
2.8492900000000003
vioscreen_calories
1381.677825
vioscreen_carbo
153.1259632
vioscreen_cholest
77.43358305
vioscreen_choline
143.4818279
vioscreen_clac9t11
0.046712327000000005
vioscreen_clat10c12
0.007671233
vioscreen_copper
1.023479472
vioscreen_coumest
0.124410958
vioscreen_cystine
0.575342424
vioscreen_d_cheese
0.649479445
vioscreen_d_milk
0.059753428
vioscreen_d_tot_soym
1.210328653
vioscreen_d_total
1.210328653
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
7.586439828
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.069617201
vioscreen_discfat_oil
37.33854613
vioscreen_discfat_sol
18.83972737
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000246575
vioscreen_f_citmlb
0.09446575199999999
vioscreen_f_nj_citmlb
0.044246574000000004
vioscreen_f_nj_other
0.182246587
vioscreen_f_nj_total
0.22652057
vioscreen_f_other
0.182246587
vioscreen_f_total
0.27671235
vioscreen_fat
65.89108519
vioscreen_fiber
15.7726295
vioscreen_fibh2o
4.739150792
vioscreen_fibinso
11.03843911
vioscreen_finished
8/15/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
631.8464041
vioscreen_fol_nat
193.9896618
vioscreen_fol_syn
257.5091824
vioscreen_formontn
0.001232877
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
0.3
vioscreen_frtsumm
0.6
vioscreen_fructose
6.6137815710000005
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
2.76167126
vioscreen_g_total
4.437123421
vioscreen_g_whl
1.675451995
vioscreen_galactos
0.718684868
vioscreen_gammtoco
12.3616425
vioscreen_gender
false
vioscreen_genistn
9.031287457000001
vioscreen_glac
68.31134418
vioscreen_gltc
74.81555009
vioscreen_glucose
6.885534166
vioscreen_glutamic
9.572410103
vioscreen_glycine
1.5710409090000002
vioscreen_glycitn
1.5383289080000002
vioscreen_grams
2131.299144
vioscreen_hei2010_dairy
6.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
9.5
vioscreen_hei2010_fruit
1.3
vioscreen_hei2010_greens_beans
2.9
vioscreen_hei2010_protien_foods
3.4
vioscreen_hei2010_refined_grains
9.2
vioscreen_hei2010_score
75.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.0
vioscreen_hei2010_whole_grains
8.1
vioscreen_hei_drk_g_org_veg_leg
3.6
vioscreen_hei_fruit
1.3
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
6.7
vioscreen_hei_milk
6.7
vioscreen_hei_non_juice_frt
2.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.3
vioscreen_hei_score
70.1
vioscreen_hei_sodium
1.7
vioscreen_hei_sol_fat_alc_add_sug
18.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.0
vioscreen_height
Not provided
vioscreen_histidin
1.109013722
vioscreen_inositol
0.06279452099999999
vioscreen_iron
16.25013779
vioscreen_isoleuc
1.992383649
vioscreen_isomalt
0.0
vioscreen_joules
5780.939041
vioscreen_juice_servings
0.10038
vioscreen_lactitol
0.0
vioscreen_lactose
8.921725171
vioscreen_legumes
0.023890412000000003
vioscreen_leucine
3.497287364
vioscreen_line_gi
281.4921661
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
3213.5023969999997
vioscreen_lycopene
1834.701541
vioscreen_lysine
2.5641094890000002
vioscreen_m_egg
0.123808226
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.036931506
vioscreen_m_meat
0.057123289
vioscreen_m_mpf
0.173534247
vioscreen_m_nutsd
0.560684957
vioscreen_m_organ
0.0
vioscreen_m_poult
0.07947945299999999
vioscreen_m_soy
1.36953426
vioscreen_magnes
251.0828125
vioscreen_maltitol
0.0
vioscreen_maltose
2.521589222
vioscreen_mangan
4.180602191
vioscreen_mannitol
0.119479454
vioscreen_methhis3
0.753369893
vioscreen_methion
0.862054861
vioscreen_mfa141
0.05263014
vioscreen_mfa161
0.681890326
vioscreen_mfa181
26.80069028
vioscreen_mfa201
0.217397235
vioscreen_mfa221
0.004410959
vioscreen_mfatot
27.94950503
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.041888511
vioscreen_nccglbr
109.6627676
vioscreen_nccglgr
76.71947239
vioscreen_niacin
13.97136665
vioscreen_niacineq
22.74970302
vioscreen_nitrogen
7.299424096
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.553780835
vioscreen_oxalic
253.10714900000002
vioscreen_oxalicm
263.0583476
vioscreen_pantothe
3.080603195
vioscreen_pectins
2.088438269
vioscreen_pfa182
14.02093188
vioscreen_pfa183
1.535972616
vioscreen_pfa184
0.001041096
vioscreen_pfa204
0.025479453
vioscreen_pfa205
0.008465753000000001
vioscreen_pfa225
0.0041917809999999995
vioscreen_pfa226
0.004136986
vioscreen_pfatot
15.6547691
vioscreen_phenylal
2.177671166
vioscreen_phosphor
903.3520548
vioscreen_phytic
713.7393408
vioscreen_pinitol
0.067972612
vioscreen_potass
1956.481164
vioscreen_procdate
10/28/15
vioscreen_proline
3.475123408
vioscreen_protanim
15.89561617
vioscreen_protein
44.59120559
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.68684985
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
201.0
vioscreen_retinol
295.9670377
vioscreen_rgrain
3.44608171
vioscreen_ribofla
1.4177262819999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.5070399999999999
vioscreen_satoco
0.0
vioscreen_selenium
70.06278896
vioscreen_serine
2.309260455
vioscreen_sfa100
0.38849311700000005
vioscreen_sfa120
0.551205486
vioscreen_sfa140
1.555616739
vioscreen_sfa160
10.18487733
vioscreen_sfa170
0.07093151
vioscreen_sfa180
3.672959252
vioscreen_sfa200
0.18898631100000002
vioscreen_sfa220
0.16301368800000002
vioscreen_sfa40
0.42997256799999994
vioscreen_sfa60
0.226931512
vioscreen_sfa80
0.190493147
vioscreen_sfatot
17.92482342
vioscreen_sodium
2491.640068
vioscreen_sorbitol
0.057616445
vioscreen_srvid
20409.0
vioscreen_starch
73.42929688
vioscreen_started
8/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.75399989
vioscreen_sweet_servings
0.29149
vioscreen_tagatose
4.08293156
vioscreen_tfa161t
0.033945204
vioscreen_tfa181t
0.846712295
vioscreen_tfa182t
0.253835642
vioscreen_tgrain
5.11983559
vioscreen_thiamin
1.622657755
vioscreen_threonin
1.624684958
vioscreen_time
23.0
vioscreen_totaltfa
1.161726024
vioscreen_totcla
0.054767128
vioscreen_totfolat
451.49871579999996
vioscreen_totsugar
48.65991545
vioscreen_tryptoph
0.527753522
vioscreen_tyrosine
1.654931641
vioscreen_user_id
20409.0
vioscreen_v_drkgr
0.158328759
vioscreen_v_orange
0.24016439399999998
vioscreen_v_other
0.8051505309999999
vioscreen_v_potato
0.300136995
vioscreen_v_starcy
0.046054793
vioscreen_v_tomato
0.157315074
vioscreen_v_total
1.707123221
vioscreen_valine
2.432438764
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.4
vioscreen_visit
1.0
vioscreen_vita_iu
10800.29315
vioscreen_vita_rae
786.6767123
vioscreen_vita_re
1277.38536
vioscreen_vitb12
3.165972482
vioscreen_vitb6
1.434739873
vioscreen_vitc
82.51433005
vioscreen_vitd
2.390054781
vioscreen_vitd2
0.0024657529999999998
vioscreen_vitd3
2.387643809
vioscreen_vitd_iu
95.60219125
vioscreen_vite_iu
11.99723084
vioscreen_vitk
156.4595355
vioscreen_water
1861.790068
vioscreen_weight
Not provided
vioscreen_wgrain
1.6737261209999998
vioscreen_whole_grain_servings
1.67545
vioscreen_xylitol
0.01389041
vioscreen_zinc
9.09054741
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)