American Gut Project; 10317.000030232
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633760
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:30:08Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030232
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
75.0
age_corrected
75.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030232
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1940.0
bmi
25.75
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
Diagnosed by a medical professional (doctor, physician assistant)
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Not provided
collection date
07/08/2015
collection month
July
collection season
Summer
collection time
07:50
collection_timestamp
2015-07-08 07:50
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
23.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
188.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
15fe202b47de0e7ba9601d356b6a5fe270fd2ec77a82cd8fdf60414562529e0a786b0371323cc70dd9869082d8086aadd68386099c4b2e4fc939ddaa1b7ddfc3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not provided
longitude
-2.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030232
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
22fb702cb915f511
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.926000057
vioscreen_a_cal
136.2484161
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.674026782
vioscreen_addsugar
47.37627355
vioscreen_adsugtot
43.08657427
vioscreen_age
215.0
vioscreen_alanine
2.87504147
vioscreen_alcohol
13.11435547
vioscreen_alcohol_servings
0.9259999999999999
vioscreen_alphacar
1216.060959
vioscreen_alphtoce
10.57131582
vioscreen_alphtoco
9.801617347999999
vioscreen_arginine
3.493890799
vioscreen_ash
20.18718161
vioscreen_aspartam
0.0
vioscreen_aspartic
5.947260274
vioscreen_avcarb
224.79897259999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
9018.10411
vioscreen_betacryp
288.0521404
vioscreen_betaine
225.56538959999997
vioscreen_betatoco
0.227315093
vioscreen_biochana
0.007232876
vioscreen_bmi
Not provided
vioscreen_caffeine
96.86364512
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.3446799999999999
vioscreen_calcium_servings
3.5884699999999996
vioscreen_calories
1807.6582190000001
vioscreen_carbo
259.7759418
vioscreen_cholest
146.824101
vioscreen_choline
320.7869649
vioscreen_clac9t11
0.086712328
vioscreen_clat10c12
0.016465753
vioscreen_copper
1.536383475
vioscreen_coumest
0.075561644
vioscreen_cystine
0.6922739109999999
vioscreen_d_cheese
0.533452031
vioscreen_d_milk
0.311424673
vioscreen_d_tot_soym
1.344684925
vioscreen_d_total
1.344684925
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.119397255
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.070849442
vioscreen_discfat_oil
18.18251953
vioscreen_discfat_sol
25.76282106
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004410959
vioscreen_f_citmlb
1.427726014
vioscreen_f_nj_citmlb
1.425589115
vioscreen_f_nj_other
2.098548032
vioscreen_f_nj_total
3.524164571
vioscreen_f_other
2.098548032
vioscreen_f_total
3.526301637
vioscreen_fat
54.55895762
vioscreen_fiber
34.97977847
vioscreen_fibh2o
9.007451975
vioscreen_fibinso
26.242056400000003
vioscreen_finished
7/2/15
vioscreen_fish_servings
1.17173
vioscreen_fol_deqv
709.5307363
vioscreen_fol_nat
344.1885916
vioscreen_fol_syn
214.8972389
vioscreen_formontn
0.004712329
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.05114
vioscreen_frt5_day
6.0
vioscreen_frtsumm
7.1
vioscreen_fructose
37.52184022
vioscreen_fruit_servings
6.0
vioscreen_g_nwhl
0.745780882
vioscreen_g_total
3.72347897
vioscreen_g_whl
2.97769859
vioscreen_galactos
1.084849318
vioscreen_gammtoco
6.702931694
vioscreen_gender
false
vioscreen_genistn
0.09183561800000001
vioscreen_glac
110.47668020000002
vioscreen_gltc
124.7574165
vioscreen_glucose
37.55353703
vioscreen_glutamic
11.275726400000002
vioscreen_glycine
2.441095723
vioscreen_glycitn
0.01
vioscreen_grams
2995.97911
vioscreen_hei2010_dairy
5.7
vioscreen_hei2010_empty_calories
18.2
vioscreen_hei2010_fatty_acids
1.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.8
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.7
vioscreen_hei2010_sea_foods_plant_protiens
3.1
vioscreen_hei2010_sodium
7.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.4
vioscreen_hei_meat_beans
5.5
vioscreen_hei_milk
5.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.4
vioscreen_hei_sat_fat
7.9
vioscreen_hei_score
75.3
vioscreen_hei_sodium
5.6
vioscreen_hei_sol_fat_alc_add_sug
13.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.580849175
vioscreen_inositol
0.28304111
vioscreen_iron
18.68512013
vioscreen_isoleuc
2.67202717
vioscreen_isomalt
0.0
vioscreen_joules
7563.240411
vioscreen_juice_servings
0.00433
vioscreen_lactitol
0.0
vioscreen_lactose
11.86676611
vioscreen_legumes
0.038821918
vioscreen_leucine
4.596492736
vioscreen_line_gi
666.4241437999999
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
12704.40548
vioscreen_lycopene
2096.278938
vioscreen_lysine
4.117206229
vioscreen_m_egg
0.151671235
vioscreen_m_fish_hi
0.41556162399999996
vioscreen_m_fish_lo
0.252136983
vioscreen_m_frank
0.056986299000000004
vioscreen_m_meat
1.238630154
vioscreen_m_mpf
2.120712489
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.0
vioscreen_m_poult
0.157397252
vioscreen_m_soy
0.001945205
vioscreen_magnes
392.0556079
vioscreen_maltitol
0.0
vioscreen_maltose
3.6512875910000004
vioscreen_mangan
4.806493472
vioscreen_mannitol
0.307753451
vioscreen_methhis3
8.719726562
vioscreen_methion
1.306383358
vioscreen_mfa141
0.080904117
vioscreen_mfa161
0.8668217909999999
vioscreen_mfa181
17.93353355
vioscreen_mfa201
0.20690412100000002
vioscreen_mfa221
0.066657534
vioscreen_mfatot
19.45766936
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.801617347999999
vioscreen_nccglbr
166.33495290000002
vioscreen_nccglgr
116.3526006
vioscreen_niacin
20.65177922
vioscreen_niacineq
31.77435788
vioscreen_nitrogen
10.70898504
vioscreen_non_fried_fish_servings
1.17173
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.550466041
vioscreen_oxalic
525.4854452
vioscreen_oxalicm
548.4144692000001
vioscreen_pantothe
5.033232556000001
vioscreen_pectins
6.094601482000001
vioscreen_pfa182
8.160876632
vioscreen_pfa183
1.337726081
vioscreen_pfa184
0.016027397
vioscreen_pfa204
0.05076712
vioscreen_pfa205
0.059068492
vioscreen_pfa225
0.025972604
vioscreen_pfa226
0.11208220199999999
vioscreen_pfatot
9.815422998999999
vioscreen_phenylal
2.668986114
vioscreen_phosphor
1277.031336
vioscreen_phytic
586.4732021000001
vioscreen_pinitol
0.008849315
vioscreen_potass
3602.328082
vioscreen_procdate
10/28/15
vioscreen_proline
4.134219151
vioscreen_protanim
34.22870826
vioscreen_protein
66.47342145
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
32.23615957
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
338.0
vioscreen_retinol
375.3094606
vioscreen_rgrain
1.169643872
vioscreen_ribofla
2.2073976280000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.05444
vioscreen_satoco
0.0
vioscreen_selenium
85.36131207
vioscreen_serine
2.789095777
vioscreen_sfa100
0.526821899
vioscreen_sfa120
0.554054783
vioscreen_sfa140
2.257342446
vioscreen_sfa160
10.46008267
vioscreen_sfa170
0.068356166
vioscreen_sfa180
4.5927399939999995
vioscreen_sfa200
0.095726024
vioscreen_sfa220
0.046410966
vioscreen_sfa40
0.655232887
vioscreen_sfa60
0.35345208200000006
vioscreen_sfa80
0.231972619
vioscreen_sfatot
20.26476616
vioscreen_sodium
2474.524144
vioscreen_sorbitol
3.2735063939999995
vioscreen_srvid
20036.0
vioscreen_starch
53.19389448
vioscreen_started
7/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
45.6505244
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
5.0732602469999994
vioscreen_tfa161t
0.090931514
vioscreen_tfa181t
1.033862974
vioscreen_tfa182t
0.330849342
vioscreen_tgrain
4.064767498
vioscreen_thiamin
1.664766996
vioscreen_threonin
2.366657581
vioscreen_time
36.0
vioscreen_totaltfa
1.618164397
vioscreen_totcla
0.10372604
vioscreen_totfolat
559.0857449
vioscreen_totsugar
139.8901434
vioscreen_tryptoph
0.66841092
vioscreen_tyrosine
2.1067673769999997
vioscreen_user_id
20036.0
vioscreen_v_drkgr
0.7764657629999999
vioscreen_v_orange
0.223013682
vioscreen_v_other
0.8134794890000001
vioscreen_v_potato
0.188328782
vioscreen_v_starcy
0.708383555
vioscreen_v_tomato
0.23783561
vioscreen_v_total
2.947451908
vioscreen_valine
3.2424657530000003
vioscreen_veg5_day
5.1
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
17535.43425
vioscreen_vita_rae
1189.490411
vioscreen_vita_re
2003.670377
vioscreen_vitb12
4.508027879
vioscreen_vitb6
2.209862445
vioscreen_vitc
213.92104019999996
vioscreen_vitd
5.235534501
vioscreen_vitd2
0.00030137
vioscreen_vitd3
5.235232837
vioscreen_vitd_iu
209.42138
vioscreen_vite_iu
14.60917701
vioscreen_vitk
450.05642120000005
vioscreen_water
2589.137671
vioscreen_weight
Not provided
vioscreen_wgrain
2.895095783
vioscreen_whole_grain_servings
2.9777
vioscreen_xylitol
0.073397278
vioscreen_zinc
12.75249492
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
91.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily