10317.000026424; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632732
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026424
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26424
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1975.0
bmi
24.53
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-19
collection month
April
collection season
Spring
collection time
17:00
collection_timestamp
2015-04-19 17:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
222.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
50cfa8429cb16cf8c00e5108dc08d48d65859de3b39bbfe1eba694b920b89fd941d2e92d0292b2fc49ca0a638b785d23af0b663d6c8e31ac3d08a5b2e9b0ed08
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-72.5
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026424
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VT
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
4956f3e7c97ad378
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.067260073
vioscreen_a_cal
378.0433647
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.997205426
vioscreen_addsugar
27.930190500000002
vioscreen_adsugtot
25.54942209
vioscreen_age
215.0
vioscreen_alanine
3.103479171
vioscreen_alcohol
47.29457406
vioscreen_alcohol_servings
3.0672599999999997
vioscreen_alphacar
2761.389897
vioscreen_alphtoce
13.04002836
vioscreen_alphtoco
11.89024775
vioscreen_arginine
4.158026876
vioscreen_ash
21.70838774
vioscreen_aspartam
0.0
vioscreen_aspartic
6.401343777
vioscreen_avcarb
167.28868789999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
15825.210959999999
vioscreen_betacryp
172.6796661
vioscreen_betaine
92.75956764
vioscreen_betatoco
0.437178102
vioscreen_biochana
0.010410958
vioscreen_bmi
Not provided
vioscreen_caffeine
108.128628
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.0532299999999999
vioscreen_calcium_servings
3.3571199999999997
vioscreen_calories
2005.439384
vioscreen_carbo
196.11990580000003
vioscreen_cholest
269.6048373
vioscreen_choline
371.84434930000003
vioscreen_clac9t11
0.080219175
vioscreen_clat10c12
0.016465754
vioscreen_copper
1.631315048
vioscreen_coumest
0.0460274
vioscreen_cystine
0.853369893
vioscreen_d_cheese
0.8958356470000001
vioscreen_d_milk
0.08468493099999999
vioscreen_d_tot_soym
1.05323294
vioscreen_d_total
1.05323294
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
2.02493144
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.247397394
vioscreen_discfat_oil
25.30539651
vioscreen_discfat_sol
32.49474262
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004328767
vioscreen_f_citmlb
0.863890515
vioscreen_f_nj_citmlb
0.860438433
vioscreen_f_nj_other
0.642958926
vioscreen_f_nj_total
1.503479506
vioscreen_f_other
0.642958926
vioscreen_f_total
1.506959011
vioscreen_fat
76.04688035
vioscreen_fiber
28.82118204
vioscreen_fibh2o
6.552082219
vioscreen_fibinso
22.37306828
vioscreen_finished
4/18/15
vioscreen_fish_servings
1.7548099999999998
vioscreen_fol_deqv
522.0878425
vioscreen_fol_nat
410.79888700000004
vioscreen_fol_syn
65.45359054
vioscreen_formontn
0.001972603
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
18.75375241
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
3.0475345139999996
vioscreen_g_total
3.810904056
vioscreen_g_whl
0.763424724
vioscreen_galactos
0.332246587
vioscreen_gammtoco
9.543206202
vioscreen_gender
false
vioscreen_genistn
3.1697804069999997
vioscreen_glac
65.4140518
vioscreen_gltc
73.39175407
vioscreen_glucose
20.20539517
vioscreen_glutamic
13.43890331
vioscreen_glycine
2.746411133
vioscreen_glycitn
0.335178072
vioscreen_grams
4683.0993149999995
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
13.3
vioscreen_hei2010_fatty_acids
4.0
vioscreen_hei2010_fruit
4.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.7
vioscreen_hei_grains
3.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.7
vioscreen_hei_score
64.5
vioscreen_hei_sodium
2.9
vioscreen_hei_sol_fat_alc_add_sug
7.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.3
vioscreen_height
Not provided
vioscreen_histidin
1.760027491
vioscreen_inositol
0.354547955
vioscreen_iron
13.56394344
vioscreen_isoleuc
2.967479465
vioscreen_isomalt
0.0
vioscreen_joules
8390.752054999999
vioscreen_juice_servings
0.006959999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
3.329041363
vioscreen_legumes
0.156136991
vioscreen_leucine
5.056986435
vioscreen_line_gi
340.6271404
vioscreen_low_fat_dairy_serving
0.09364
vioscreen_lutzeax
11625.89726
vioscreen_lycopene
4253.563014
vioscreen_lysine
4.191780487
vioscreen_m_egg
0.809945219
vioscreen_m_fish_hi
0.361123281
vioscreen_m_fish_lo
0.638876719
vioscreen_m_frank
0.082410959
vioscreen_m_meat
0.8601095959999999
vioscreen_m_mpf
2.00293136
vioscreen_m_nutsd
2.233123361
vioscreen_m_organ
0.0
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.138191777
vioscreen_magnes
392.13090750000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.442109576
vioscreen_mangan
5.320631221
vioscreen_mannitol
0.497095897
vioscreen_methhis3
7.806328927999999
vioscreen_methion
1.38402735
vioscreen_mfa141
0.096520547
vioscreen_mfa161
1.023150718
vioscreen_mfa181
27.02002622
vioscreen_mfa201
0.382164357
vioscreen_mfa221
0.048958905999999996
vioscreen_mfatot
28.86033016
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.89024775
vioscreen_nccglbr
130.71804369999998
vioscreen_nccglgr
91.44700343
vioscreen_niacin
17.30917835
vioscreen_niacineq
30.08739833
vioscreen_nitrogen
11.209807099999999
vioscreen_non_fried_fish_servings
1.7548099999999998
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.543013732
vioscreen_oxalic
281.5577697
vioscreen_oxalicm
269.0238014
vioscreen_pantothe
4.856219566
vioscreen_pectins
5.830793825
vioscreen_pfa182
13.32271244
vioscreen_pfa183
1.36643844
vioscreen_pfa184
0.010356165
vioscreen_pfa204
0.10175342300000001
vioscreen_pfa205
0.043945208
vioscreen_pfa225
0.019589041
vioscreen_pfa226
0.10306849
vioscreen_pfatot
15.05326145
vioscreen_phenylal
3.0413968860000002
vioscreen_phosphor
1304.695976
vioscreen_phytic
744.5478596
vioscreen_pinitol
0.02090411
vioscreen_potass
3547.8260270000005
vioscreen_procdate
10/28/15
vioscreen_proline
4.237973231000001
vioscreen_protanim
33.74991438
vioscreen_protein
68.39779538
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
34.64761344
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
469.0
vioscreen_retinol
275.81260699999996
vioscreen_rgrain
2.660136853
vioscreen_ribofla
1.585890511
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.0426599999999997
vioscreen_satoco
0.0
vioscreen_selenium
99.02585616
vioscreen_serine
3.3980549019999997
vioscreen_sfa100
0.5614519929999999
vioscreen_sfa120
0.9086575440000001
vioscreen_sfa140
2.488301316
vioscreen_sfa160
13.31375482
vioscreen_sfa170
0.110931501
vioscreen_sfa180
5.652493579
vioscreen_sfa200
0.236027422
vioscreen_sfa220
0.384246534
vioscreen_sfa40
0.649041121
vioscreen_sfa60
0.34580824299999996
vioscreen_sfa80
0.271972594
vioscreen_sfatot
25.45333904
vioscreen_sodium
3351.607877
vioscreen_sorbitol
0.339424677
vioscreen_srvid
18535.0
vioscreen_starch
60.55010702
vioscreen_started
4/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.37551102
vioscreen_sweet_servings
0.5102399999999999
vioscreen_tagatose
1.8516986169999998
vioscreen_tfa161t
0.067643837
vioscreen_tfa181t
1.176575376
vioscreen_tfa182t
0.329890421
vioscreen_tgrain
3.8525755160000004
vioscreen_thiamin
1.253972469
vioscreen_threonin
2.528411113
vioscreen_time
37.0
vioscreen_totaltfa
1.587890291
vioscreen_totcla
0.096931499
vioscreen_totfolat
476.25244010000006
vioscreen_totsugar
76.41532534
vioscreen_tryptoph
0.7690958940000001
vioscreen_tyrosine
2.342657387
vioscreen_user_id
18535.0
vioscreen_v_drkgr
1.418054701
vioscreen_v_orange
0.608739733
vioscreen_v_other
1.973808059
vioscreen_v_potato
0.100630136
vioscreen_v_starcy
0.002109589
vioscreen_v_tomato
0.347753446
vioscreen_v_total
4.451068199
vioscreen_valine
3.403123328
vioscreen_veg5_day
6.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
8.9
vioscreen_visit
1.0
vioscreen_vita_iu
29740.92055
vioscreen_vita_rae
1716.8339039999998
vioscreen_vita_re
3157.855479
vioscreen_vitb12
2.556219399
vioscreen_vitb6
2.140767304
vioscreen_vitc
206.84888700000002
vioscreen_vitd
4.99928731
vioscreen_vitd2
0.000273973
vioscreen_vitd3
4.999013739
vioscreen_vitd_iu
199.97149240000002
vioscreen_vite_iu
17.72745478
vioscreen_vitk
626.5559932
vioscreen_water
4287.659589
vioscreen_weight
Not provided
vioscreen_wgrain
1.192438329
vioscreen_whole_grain_servings
0.76342
vioscreen_xylitol
0.09232878
vioscreen_zinc
9.820986729
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)