American Gut Project; 10317.000030116
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634125
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030116
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030116
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1960.0
bmi
33.78
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
09/07/2015
collection month
September
collection season
Fall
collection time
11:55
collection_timestamp
2015-09-07 11:55
consume_animal_products_abx
Yes
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
40.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
147.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
cefbd24c4b8d12bbe58a47bfea0fe377eee17728d1cb75a5872585c0a0cb1dcc671f1e424416d85e6cea465ff9499eaaa035531e853a114ff4c367ca07c37da9
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
Not provided
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
53.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-2.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030116
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
2d5f81a29491732c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.23567122399999998
vioscreen_a_cal
27.14435467
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.633342252
vioscreen_addsugar
20.46569858
vioscreen_adsugtot
19.72698791
vioscreen_age
215.0
vioscreen_alanine
1.823315262
vioscreen_alcohol
3.506931587
vioscreen_alcohol_servings
0.23567
vioscreen_alphacar
114.50729879999999
vioscreen_alphtoce
5.711507384
vioscreen_alphtoco
5.141890518
vioscreen_arginine
2.014219352
vioscreen_ash
11.33331416
vioscreen_aspartam
0.0
vioscreen_aspartic
3.940739713
vioscreen_avcarb
123.3200878
vioscreen_bcodeid
Not provided
vioscreen_betacar
2374.145719
vioscreen_betacryp
157.06919950000002
vioscreen_betaine
99.95019264
vioscreen_betatoco
0.19589039
vioscreen_biochana
0.0041917809999999995
vioscreen_bmi
Not provided
vioscreen_caffeine
163.5338399
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.4643
vioscreen_calcium_servings
2.16893
vioscreen_calories
964.3467466
vioscreen_carbo
143.5790347
vioscreen_cholest
95.29556935
vioscreen_choline
204.94565500000002
vioscreen_clac9t11
0.0210137
vioscreen_clat10c12
0.002520548
vioscreen_copper
0.864027718
vioscreen_coumest
0.020109589
vioscreen_cystine
0.592547942
vioscreen_d_cheese
0.13438356
vioscreen_d_milk
1.3284931340000001
vioscreen_d_tot_soym
1.46430129
vioscreen_d_total
1.46430129
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.267808198
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.0227397759999999
vioscreen_discfat_oil
10.49986288
vioscreen_discfat_sol
12.20805463
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
1.498959058
vioscreen_f_nj_citmlb
1.493589135
vioscreen_f_nj_other
0.299178095
vioscreen_f_nj_total
1.79276725
vioscreen_f_other
0.299178095
vioscreen_f_total
1.79810975
vioscreen_fat
26.32753104
vioscreen_fiber
20.25854827
vioscreen_fibh2o
5.753478837
vioscreen_fibinso
14.57169975
vioscreen_finished
9/7/15
vioscreen_fish_servings
2.21808
vioscreen_fol_deqv
275.9892337
vioscreen_fol_nat
243.42170380000002
vioscreen_fol_syn
19.17616385
vioscreen_formontn
0.001835616
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.6
vioscreen_fructose
14.61673935
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
1.8675889940000001
vioscreen_g_total
4.162466222
vioscreen_g_whl
2.294876726
vioscreen_galactos
0.10254793599999999
vioscreen_gammtoco
4.814027049
vioscreen_gender
false
vioscreen_genistn
0.385671286
vioscreen_glac
57.55021939
vioscreen_gltc
65.692942
vioscreen_glucose
14.28326065
vioscreen_glutamic
8.224741144
vioscreen_glycine
1.535808239
vioscreen_glycitn
0.078191783
vioscreen_grams
2501.966096
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
19.7
vioscreen_hei2010_fatty_acids
9.9
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.7
vioscreen_hei2010_refined_grains
9.5
vioscreen_hei2010_score
92.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.3
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.1
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
88.5
vioscreen_hei_sodium
3.6
vioscreen_hei_sol_fat_alc_add_sug
18.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.0506302509999998
vioscreen_inositol
0.19334244399999997
vioscreen_iron
6.936931453
vioscreen_isoleuc
1.789013839
vioscreen_isomalt
0.0
vioscreen_joules
4034.824315
vioscreen_juice_servings
0.01077
vioscreen_lactitol
0.0
vioscreen_lactose
16.40512361
vioscreen_legumes
0.001452055
vioscreen_leucine
3.204794521
vioscreen_line_gi
363.842851
vioscreen_low_fat_dairy_serving
1.07249
vioscreen_lutzeax
2956.8753420000003
vioscreen_lycopene
1910.1308219999999
vioscreen_lysine
2.737479599
vioscreen_m_egg
0.296356159
vioscreen_m_fish_hi
0.442986308
vioscreen_m_fish_lo
0.8210959240000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.263945195
vioscreen_m_nutsd
0.039534247
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.15509589199999999
vioscreen_magnes
271.9804366
vioscreen_maltitol
0.0
vioscreen_maltose
0.8118630609999999
vioscreen_mangan
5.015013645
vioscreen_mannitol
0.109342465
vioscreen_methhis3
2.357945105
vioscreen_methion
0.9106027259999999
vioscreen_mfa141
0.023342467000000002
vioscreen_mfa161
0.268986323
vioscreen_mfa181
8.194055009
vioscreen_mfa201
0.120712333
vioscreen_mfa221
0.041561644
vioscreen_mfatot
8.69685092
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
5.141890518
vioscreen_nccglbr
90.21089469
vioscreen_nccglgr
63.10882384
vioscreen_niacin
9.566492535
vioscreen_niacineq
17.96188865
vioscreen_nitrogen
6.716903896
vioscreen_non_fried_fish_servings
2.21808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.22279429
vioscreen_oxalic
201.7392765
vioscreen_oxalicm
187.37232450000002
vioscreen_pantothe
3.570000134
vioscreen_pectins
3.1553697560000002
vioscreen_pfa182
6.9042186160000005
vioscreen_pfa183
1.0417257229999999
vioscreen_pfa184
0.010547945
vioscreen_pfa204
0.035616436
vioscreen_pfa205
0.042246578
vioscreen_pfa225
0.013917808
vioscreen_pfa226
0.114191771
vioscreen_pfatot
8.19123301
vioscreen_phenylal
1.8758902769999999
vioscreen_phosphor
929.0975171
vioscreen_phytic
632.4403252999999
vioscreen_pinitol
0.005150685
vioscreen_potass
2164.028425
vioscreen_procdate
10/28/15
vioscreen_proline
2.622328834
vioscreen_protanim
23.1987104
vioscreen_protein
41.35997432
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.162276600000002
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
111.0
vioscreen_retinol
246.9315711
vioscreen_rgrain
0.9885753890000001
vioscreen_ribofla
1.30816433
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7081099999999998
vioscreen_satoco
0.0
vioscreen_selenium
64.59977526
vioscreen_serine
2.073753545
vioscreen_sfa100
0.135835611
vioscreen_sfa120
0.252191789
vioscreen_sfa140
0.530520504
vioscreen_sfa160
3.9305205880000003
vioscreen_sfa170
0.03441096
vioscreen_sfa180
1.360109679
vioscreen_sfa200
0.059369862999999995
vioscreen_sfa220
0.042109590999999995
vioscreen_sfa40
0.159616434
vioscreen_sfa60
0.082602744
vioscreen_sfa80
0.073917812
vioscreen_sfatot
6.791644371
vioscreen_sodium
1533.501884
vioscreen_sorbitol
0.22416440399999998
vioscreen_srvid
20644.0
vioscreen_starch
53.10888271
vioscreen_started
9/7/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.92005431
vioscreen_sweet_servings
0.06215
vioscreen_tagatose
0.20912329300000002
vioscreen_tfa161t
0.0038356159999999996
vioscreen_tfa181t
0.298054797
vioscreen_tfa182t
0.092767125
vioscreen_tgrain
4.60002709
vioscreen_thiamin
0.908356215
vioscreen_threonin
1.5603836690000001
vioscreen_time
18.0
vioscreen_totaltfa
0.40180818700000004
vioscreen_totcla
0.023643836
vioscreen_totfolat
262.59781680000003
vioscreen_totsugar
63.65972282
vioscreen_tryptoph
0.503369851
vioscreen_tyrosine
1.470273872
vioscreen_user_id
20644.0
vioscreen_v_drkgr
0.48989044600000003
vioscreen_v_orange
0.006
vioscreen_v_other
0.697726022
vioscreen_v_potato
0.005479451999999999
vioscreen_v_starcy
0.0023287670000000003
vioscreen_v_tomato
0.308849324
vioscreen_v_total
1.510273805
vioscreen_valine
2.180657541
vioscreen_veg5_day
3.1
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
3.0
vioscreen_visit
1.0
vioscreen_vita_iu
5007.838356
vioscreen_vita_rae
456.0923801
vioscreen_vita_re
665.2548801
vioscreen_vitb12
2.929972442
vioscreen_vitb6
0.918246502
vioscreen_vitc
162.84014340000002
vioscreen_vitd
6.6963011020000005
vioscreen_vitd2
0.001589041
vioscreen_vitd3
6.694712516
vioscreen_vitd_iu
267.8520441
vioscreen_vite_iu
7.660713426
vioscreen_vitk
167.89251930000003
vioscreen_water
2288.664384
vioscreen_weight
Not provided
vioscreen_wgrain
3.61167126
vioscreen_whole_grain_servings
2.29488
vioscreen_xylitol
0.058301367
vioscreen_zinc
5.806300835
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)