American Gut Project; 10317.000029195
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633672
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:02Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029195
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29195
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
24.28
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-25
collection month
June
collection season
Summer
collection time
06:00
collection_timestamp
2015-06-25 06:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
1575.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
665bde846432d0197140bfb02855622099cba0d7c452729fc985a881a82fda1e6b7590bd21735567ddef7c7ae8858be0ed907344de604b3bb0d71e5c21537cc1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-105.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029195
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
5ed089b25fd4523f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.206438352
vioscreen_a_cal
27.48252087
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.261452536
vioscreen_addsugar
35.19435734
vioscreen_adsugtot
32.14665828
vioscreen_age
215.0
vioscreen_alanine
2.401506649
vioscreen_alcohol
2.897616452
vioscreen_alcohol_servings
0.20644
vioscreen_alphacar
1827.593493
vioscreen_alphtoce
16.19745291
vioscreen_alphtoco
14.84337008
vioscreen_arginine
3.56926002
vioscreen_ash
17.57265625
vioscreen_aspartam
0.0
vioscreen_aspartic
5.7381641960000005
vioscreen_avcarb
128.6674658
vioscreen_bcodeid
Not provided
vioscreen_betacar
7486.330137000001
vioscreen_betacryp
320.4892765
vioscreen_betaine
60.16153146
vioscreen_betatoco
0.555945159
vioscreen_biochana
0.004438356
vioscreen_bmi
Not provided
vioscreen_caffeine
180.84578340000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.7895900000000002
vioscreen_calcium_servings
2.90512
vioscreen_calories
1613.2136990000001
vioscreen_carbo
151.05087759999998
vioscreen_cholest
269.980351
vioscreen_choline
339.1868793
vioscreen_clac9t11
0.061095894000000005
vioscreen_clat10c12
0.013917811
vioscreen_copper
1.279123301
vioscreen_coumest
0.13383562300000001
vioscreen_cystine
0.707534247
vioscreen_d_cheese
0.667123288
vioscreen_d_milk
0.620767128
vioscreen_d_tot_soym
1.789589075
vioscreen_d_total
1.789589075
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.163808222
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.591780989
vioscreen_discfat_oil
46.98322988
vioscreen_discfat_sol
25.01728917
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000767123
vioscreen_f_citmlb
0.04854794900000001
vioscreen_f_nj_citmlb
0.045780819
vioscreen_f_nj_other
1.993287805
vioscreen_f_nj_total
2.03906852
vioscreen_f_other
1.993287805
vioscreen_f_total
2.041863094
vioscreen_fat
92.02319135
vioscreen_fiber
22.38413554
vioscreen_fibh2o
6.888602981
vioscreen_fibinso
15.52964469
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
325.28747860000004
vioscreen_fol_nat
299.0113014
vioscreen_fol_syn
15.43991733
vioscreen_formontn
0.0031232879999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
4.1
vioscreen_fructose
19.41666042
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.791808246
vioscreen_g_total
1.27060271
vioscreen_g_whl
0.478794505
vioscreen_galactos
0.760767103
vioscreen_gammtoco
11.17495719
vioscreen_gender
false
vioscreen_genistn
0.07947945299999999
vioscreen_glac
48.53477098
vioscreen_gltc
53.60150364
vioscreen_glucose
17.16569991
vioscreen_glutamic
11.33125936
vioscreen_glycine
2.226794601
vioscreen_glycitn
0.005205479
vioscreen_grams
3061.541096
vioscreen_hei2010_dairy
8.5
vioscreen_hei2010_empty_calories
18.4
vioscreen_hei2010_fatty_acids
8.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
83.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.3
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.0
vioscreen_hei_score
74.4
vioscreen_hei_sodium
4.7
vioscreen_hei_sol_fat_alc_add_sug
17.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
1.5143561380000001
vioscreen_inositol
0.02008219
vioscreen_iron
6.810271966
vioscreen_isoleuc
2.475835596
vioscreen_isomalt
0.0
vioscreen_joules
6749.681506999999
vioscreen_juice_servings
0.005529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
15.84764421
vioscreen_legumes
0.017424658
vioscreen_leucine
4.420986729
vioscreen_line_gi
245.0559289
vioscreen_low_fat_dairy_serving
0.54419
vioscreen_lutzeax
2513.9563359999997
vioscreen_lycopene
2994.315068
vioscreen_lysine
3.421698751
vioscreen_m_egg
1.011561647
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.8666849209999999
vioscreen_m_meat
0.028931507999999998
vioscreen_m_mpf
1.0838903979999999
vioscreen_m_nutsd
4.461178296
vioscreen_m_organ
0.0
vioscreen_m_poult
0.188273976
vioscreen_m_soy
0.00030137
vioscreen_magnes
323.83135699999997
vioscreen_maltitol
0.0
vioscreen_maltose
1.637780929
vioscreen_mangan
2.651506983
vioscreen_mannitol
0.64893155
vioscreen_methhis3
3.189753451
vioscreen_methion
1.188082175
vioscreen_mfa141
0.070054794
vioscreen_mfa161
0.853561527
vioscreen_mfa181
34.82578393
vioscreen_mfa201
0.547287698
vioscreen_mfa221
0.0047945209999999995
vioscreen_mfatot
36.55424872
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.84337008
vioscreen_nccglbr
88.54684289
vioscreen_nccglgr
61.93718429
vioscreen_niacin
15.86030073
vioscreen_niacineq
26.24062768
vioscreen_nitrogen
9.584849235
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.760904056
vioscreen_oxalic
266.9193279
vioscreen_oxalicm
296.2951627
vioscreen_pantothe
5.691151407
vioscreen_pectins
4.30583563
vioscreen_pfa182
21.24734054
vioscreen_pfa183
1.722986174
vioscreen_pfa184
0.001808219
vioscreen_pfa204
0.10008219900000001
vioscreen_pfa205
0.005917808
vioscreen_pfa225
0.005726027
vioscreen_pfa226
0.024821918999999998
vioscreen_pfatot
23.15380458
vioscreen_phenylal
2.781095656
vioscreen_phosphor
1133.206764
vioscreen_phytic
690.7366866
vioscreen_pinitol
0.000164384
vioscreen_potass
2789.425514
vioscreen_procdate
10/28/15
vioscreen_proline
3.936493004
vioscreen_protanim
31.30955961
vioscreen_protein
57.56378425
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
26.246984700000002
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
367.0
vioscreen_retinol
284.597667
vioscreen_rgrain
0.7454794690000001
vioscreen_ribofla
1.821917808
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.2011
vioscreen_satoco
0.0
vioscreen_selenium
89.03378104
vioscreen_serine
3.14561684
vioscreen_sfa100
0.42504113600000004
vioscreen_sfa120
0.5306575410000001
vioscreen_sfa140
1.9312877919999998
vioscreen_sfa160
14.01947908
vioscreen_sfa170
0.091041105
vioscreen_sfa180
5.947561938
vioscreen_sfa200
0.417506848
vioscreen_sfa220
0.733589068
vioscreen_sfa40
0.5596711879999999
vioscreen_sfa60
0.27523287399999996
vioscreen_sfa80
0.191589042
vioscreen_sfatot
25.71887575
vioscreen_sodium
2374.077568
vioscreen_sorbitol
0.9476439590000001
vioscreen_srvid
19966.0
vioscreen_starch
25.43583851
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.83657695
vioscreen_sweet_servings
0.65205
vioscreen_tagatose
5.978328339
vioscreen_tfa161t
0.029205479
vioscreen_tfa181t
0.8396438390000001
vioscreen_tfa182t
0.40180822899999996
vioscreen_tgrain
1.276958894
vioscreen_thiamin
0.947616535
vioscreen_threonin
2.116630157
vioscreen_time
19.0
vioscreen_totaltfa
1.303178009
vioscreen_totcla
0.075260277
vioscreen_totfolat
314.4512842
vioscreen_totsugar
91.51891053
vioscreen_tryptoph
0.62153429
vioscreen_tyrosine
2.137342312
vioscreen_user_id
19966.0
vioscreen_v_drkgr
0.40446576700000003
vioscreen_v_orange
0.40394521200000005
vioscreen_v_other
1.479150725
vioscreen_v_potato
0.038904109
vioscreen_v_starcy
0.015424658
vioscreen_v_tomato
0.142191775
vioscreen_v_total
2.484191727
vioscreen_valine
3.0130959710000003
vioscreen_veg5_day
6.5
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
15214.18767
vioscreen_vita_rae
997.9613014
vioscreen_vita_re
1711.328082
vioscreen_vitb12
2.632712503
vioscreen_vitb6
1.788575557
vioscreen_vitc
161.8347175
vioscreen_vitd
3.7119180760000003
vioscreen_vitd2
0.000630137
vioscreen_vitd3
3.711315416
vioscreen_vitd_iu
148.476723
vioscreen_vite_iu
22.11775337
vioscreen_vitk
145.8817316
vioscreen_water
2752.993151
vioscreen_weight
Not provided
vioscreen_wgrain
0.531479467
vioscreen_whole_grain_servings
0.47878999999999994
vioscreen_xylitol
0.029671235
vioscreen_zinc
8.119972041
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)