10317.000022918; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632578
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:11Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022918
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22918
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
23.4
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-04-16
collection month
April
collection season
Spring
collection time
08:40
collection_timestamp
2015-04-16 08:40
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
98.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
dd75d9120bc655c24926717c8adf05d4aa51c6b3d373410aad48d79cd034437a4ce662caa0e53abb444617f02eb52da31ede63209fb0a57c890e3d89a5e64a0c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.9
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-77.2
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022918
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VA
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
1e260d6562113bbd
teethbrushing_frequency
Daily
thyroid
Not provided
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.576986234
vioscreen_a_cal
201.5138913
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.00049363
vioscreen_addsugar
55.49251926
vioscreen_adsugtot
52.47783605
vioscreen_age
215.0
vioscreen_alanine
2.61238395
vioscreen_alcohol
23.48868525
vioscreen_alcohol_servings
1.57699
vioscreen_alphacar
2694.751199
vioscreen_alphtoce
13.11260301
vioscreen_alphtoco
11.79328847
vioscreen_arginine
3.4359451919999997
vioscreen_ash
22.4770655
vioscreen_aspartam
0.0
vioscreen_aspartic
5.530055049
vioscreen_avcarb
205.0680437
vioscreen_bcodeid
Not provided
vioscreen_betacar
11384.628770000001
vioscreen_betacryp
381.3600171
vioscreen_betaine
93.23242723
vioscreen_betatoco
0.390821901
vioscreen_biochana
0.010931508000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
550.0037671
vioscreen_calcium
true
vioscreen_calcium_avg
1200.0
vioscreen_calcium_dose
1200.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
1.34195
vioscreen_calcium_servings
3.6415300000000004
vioscreen_calories
1937.339555
vioscreen_carbo
236.8450557
vioscreen_cholest
145.1358947
vioscreen_choline
310.7888271
vioscreen_clac9t11
0.055205484000000006
vioscreen_clat10c12
0.011315068000000001
vioscreen_copper
1.682685246
vioscreen_coumest
0.33843835299999997
vioscreen_cystine
0.746602683
vioscreen_d_cheese
0.637013725
vioscreen_d_milk
0.312931489
vioscreen_d_tot_soym
1.341945199
vioscreen_d_total
1.341945199
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.910410842
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.064657635
vioscreen_discfat_oil
28.97830426
vioscreen_discfat_sol
26.44085242
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0009589039999999999
vioscreen_f_citmlb
1.5598629469999998
vioscreen_f_nj_citmlb
0.8023287840000001
vioscreen_f_nj_other
0.5515068160000001
vioscreen_f_nj_total
1.353835683
vioscreen_f_other
0.55498628
vioscreen_f_total
2.114849268
vioscreen_fat
74.34288313
vioscreen_fiber
31.74255137
vioscreen_fibh2o
10.78424591
vioscreen_fibinso
21.02325824
vioscreen_finished
4/15/15
vioscreen_fish_servings
1.8675
vioscreen_fol_deqv
785.9549658
vioscreen_fol_nat
453.81035959999997
vioscreen_fol_syn
195.3068707
vioscreen_formontn
0.003671233
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.2
vioscreen_fructose
21.99197212
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.908657461
vioscreen_g_total
4.083917487
vioscreen_g_whl
2.175205346
vioscreen_galactos
0.665369906
vioscreen_gammtoco
11.214769500000001
vioscreen_gender
false
vioscreen_genistn
0.7762465390000001
vioscreen_glac
90.17878853
vioscreen_gltc
99.58986515
vioscreen_glucose
23.88027611
vioscreen_glutamic
11.63654752
vioscreen_glycine
2.305972917
vioscreen_glycitn
0.319890417
vioscreen_grams
5661.920548
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
16.8
vioscreen_hei2010_fatty_acids
5.8
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
81.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
8.3
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.8
vioscreen_hei_score
74.1
vioscreen_hei_sodium
5.2
vioscreen_hei_sol_fat_alc_add_sug
11.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
1.435233004
vioscreen_inositol
0.43841097100000004
vioscreen_iron
16.65126284
vioscreen_isoleuc
2.4611231140000003
vioscreen_isomalt
0.0
vioscreen_joules
8105.828081999999
vioscreen_juice_servings
1.52203
vioscreen_lactitol
0.0
vioscreen_lactose
11.29794521
vioscreen_legumes
0.055479452
vioscreen_leucine
4.4049861539999995
vioscreen_line_gi
589.8056507
vioscreen_low_fat_dairy_serving
0.74827
vioscreen_lutzeax
6463.239041
vioscreen_lycopene
4272.483904
vioscreen_lysine
3.4388772210000003
vioscreen_m_egg
0.314575342
vioscreen_m_fish_hi
0.68994521
vioscreen_m_fish_lo
0.37424659200000004
vioscreen_m_frank
0.043095889000000005
vioscreen_m_meat
0.332246587
vioscreen_m_mpf
1.547506756
vioscreen_m_nutsd
1.922657588
vioscreen_m_organ
0.0
vioscreen_m_poult
0.10797260199999999
vioscreen_m_soy
0.003534247
vioscreen_magnes
436.1907962
vioscreen_maltitol
0.0
vioscreen_maltose
2.30279424
vioscreen_mangan
6.496739217999999
vioscreen_mannitol
0.313945216
vioscreen_methhis3
5.462356526000001
vioscreen_methion
1.184739873
vioscreen_mfa141
0.027013698
vioscreen_mfa161
0.8725204679999999
vioscreen_mfa181
26.29838399
vioscreen_mfa201
0.399835581
vioscreen_mfa221
0.125123293
vioscreen_mfatot
28.08948256
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.77446624
vioscreen_nccglbr
145.6903574
vioscreen_nccglgr
101.9295805
vioscreen_niacin
20.98194697
vioscreen_niacineq
32.14060627
vioscreen_nitrogen
9.771534541
vioscreen_non_fried_fish_servings
1.8675
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.062931594
vioscreen_oxalic
372.8136986
vioscreen_oxalicm
373.19289380000004
vioscreen_pantothe
7.10931547
vioscreen_pectins
5.388493619
vioscreen_pfa182
14.95841315
vioscreen_pfa183
1.706246656
vioscreen_pfa184
0.028136987999999998
vioscreen_pfa204
0.054493154
vioscreen_pfa205
0.100493141
vioscreen_pfa225
0.035616436
vioscreen_pfa226
0.19284933399999998
vioscreen_pfatot
17.14553055
vioscreen_phenylal
2.632492943
vioscreen_phosphor
1276.3933220000001
vioscreen_phytic
797.0574486
vioscreen_pinitol
0.0055890409999999995
vioscreen_potass
4085.5996579999996
vioscreen_procdate
10/28/15
vioscreen_proline
4.069780407
vioscreen_protanim
29.34254869
vioscreen_protein
59.76029538
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
30.41147795
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
476.0
vioscreen_retinol
300.3104452
vioscreen_rgrain
2.242356057
vioscreen_ribofla
2.515835697
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
3.65633
vioscreen_satoco
0.041835618
vioscreen_selenium
84.20484803
vioscreen_serine
2.800575235
vioscreen_sfa100
0.41413699600000003
vioscreen_sfa120
0.89260279
vioscreen_sfa140
1.841972456
vioscreen_sfa160
12.01372672
vioscreen_sfa170
0.056630137000000004
vioscreen_sfa180
6.054712249
vioscreen_sfa200
0.230931551
vioscreen_sfa220
0.319808228
vioscreen_sfa40
0.478301417
vioscreen_sfa60
0.20876713600000002
vioscreen_sfa80
0.227808223
vioscreen_sfatot
23.0739405
vioscreen_sodium
2730.521575
vioscreen_sorbitol
0.161369878
vioscreen_srvid
18517.0
vioscreen_starch
57.33624786
vioscreen_started
4/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
57.93284996
vioscreen_sweet_servings
1.54521
vioscreen_tagatose
7.433918825
vioscreen_tfa161t
0.015890411
vioscreen_tfa181t
0.942356225
vioscreen_tfa182t
0.547808211
vioscreen_tgrain
4.4100820039999995
vioscreen_thiamin
1.5707944269999998
vioscreen_threonin
2.185095884
vioscreen_time
32.0
vioscreen_totaltfa
1.521342573
vioscreen_totcla
0.067232884
vioscreen_totfolat
649.1171661000001
vioscreen_totsugar
118.5052226
vioscreen_tryptoph
0.670054856
vioscreen_tyrosine
2.058465827
vioscreen_user_id
18517.0
vioscreen_v_drkgr
0.688274018
vioscreen_v_orange
0.576547952
vioscreen_v_other
1.838164196
vioscreen_v_potato
0.012931508000000001
vioscreen_v_starcy
0.020986302000000002
vioscreen_v_tomato
0.33553425
vioscreen_v_total
3.472410772
vioscreen_valine
2.977452108
vioscreen_veg5_day
7.5
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
22538.16712
vioscreen_vita_rae
1377.20137
vioscreen_vita_re
2454.092123
vioscreen_vitb12
4.082657655
vioscreen_vitb6
2.150164879
vioscreen_vitc
272.7878639
vioscreen_vitd
5.12649394
vioscreen_vitd2
0.001068493
vioscreen_vitd3
5.1254528310000005
vioscreen_vitd_iu
205.05975759999998
vioscreen_vite_iu
17.56484776
vioscreen_vitk
300.44432789999996
vioscreen_water
5266.585615999999
vioscreen_weight
Not provided
vioscreen_wgrain
2.167753371
vioscreen_whole_grain_servings
2.17521
vioscreen_xylitol
0.056876718
vioscreen_zinc
11.28027344
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)