American Gut Project; 10317.000022081
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632985
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:11Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022081
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22081
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1969.0
bmi
31.74
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-03-18
collection month
March
collection season
Spring
collection time
15:00
collection_timestamp
2015-03-18 15:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
Australia
country of birth
Canada
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
27.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
173.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
499794dceaab0f8c996c19b580501ae66c0d842d8c4a59b124a36d63525847b3245f999164d4f20ebb77af8fb56cbff9f97c9a97582ea66cfe6b0e3a85d6af79
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
-37.8
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
144.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Daily
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022081
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
37e6f2cc5827e680
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.324602686
vioscreen_addsugar
21.45435574
vioscreen_adsugtot
19.03583583
vioscreen_age
215.0
vioscreen_alanine
3.650520387
vioscreen_alcohol
0.02589041
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
949.0676369999999
vioscreen_alphtoce
8.053205934
vioscreen_alphtoco
7.145973352
vioscreen_arginine
3.915259792
vioscreen_ash
19.163095300000002
vioscreen_aspartam
0.0
vioscreen_aspartic
7.54810975
vioscreen_avcarb
148.19958259999999
vioscreen_bcodeid
Not provided
vioscreen_betacar
3251.058562
vioscreen_betacryp
110.0669092
vioscreen_betaine
58.56232877
vioscreen_betatoco
0.260136999
vioscreen_biochana
0.015013698999999998
vioscreen_bmi
Not provided
vioscreen_caffeine
225.0993579
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
4.75378
vioscreen_calcium_servings
5.28488
vioscreen_calories
1755.6404109999999
vioscreen_carbo
160.99204840000002
vioscreen_cholest
400.7622432
vioscreen_choline
428.7851455
vioscreen_clac9t11
0.220164385
vioscreen_clat10c12
0.035123287
vioscreen_copper
1.104109673
vioscreen_coumest
0.07169863
vioscreen_cystine
0.8846576009999999
vioscreen_d_cheese
0.925068476
vioscreen_d_milk
3.821232877
vioscreen_d_tot_soym
4.75378117
vioscreen_d_total
4.75378117
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.986931453
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.824246676
vioscreen_discfat_oil
13.94808299
vioscreen_discfat_sol
57.07983733
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000657534
vioscreen_f_citmlb
0.111506862
vioscreen_f_nj_citmlb
0.108876717
vioscreen_f_nj_other
0.388931525
vioscreen_f_nj_total
0.497808211
vioscreen_f_other
0.604876709
vioscreen_f_total
0.7164109320000001
vioscreen_fat
88.60285745
vioscreen_fiber
12.79290588
vioscreen_fibh2o
3.626164183
vioscreen_fibinso
9.066548721
vioscreen_finished
2/11/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
297.38272689999997
vioscreen_fol_nat
207.2704409
vioscreen_fol_syn
52.96435681
vioscreen_formontn
0.001041096
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.18995
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.4
vioscreen_fructose
9.852821998
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.379479312
vioscreen_g_total
2.750520555
vioscreen_g_whl
0.37104111799999995
vioscreen_galactos
0.16972602899999997
vioscreen_gammtoco
7.846464309
vioscreen_gender
false
vioscreen_genistn
1.2905480790000001
vioscreen_glac
59.50186751
vioscreen_gltc
64.41237693
vioscreen_glucose
10.19112331
vioscreen_glutamic
16.62071249
vioscreen_glycine
2.9407668019999997
vioscreen_glycitn
0.212410956
vioscreen_grams
2410.200342
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
10.7
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
2.6
vioscreen_hei2010_greens_beans
1.8
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
54.4
vioscreen_hei2010_sea_foods_plant_protiens
2.5
vioscreen_hei2010_sodium
2.3
vioscreen_hei2010_veg
4.6
vioscreen_hei2010_whole_fruit
3.5
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
2.3
vioscreen_hei_fruit
2.6
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.5
vioscreen_hei_oils
6.6
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.9
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
11.1
vioscreen_hei_veg
4.6
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
2.408547932
vioscreen_inositol
0.044767124000000005
vioscreen_iron
8.298192022
vioscreen_isoleuc
4.058684717
vioscreen_isomalt
0.0
vioscreen_joules
7345.5986299999995
vioscreen_juice_servings
0.43715
vioscreen_lactitol
0.0
vioscreen_lactose
47.74380351
vioscreen_legumes
0.109013691
vioscreen_leucine
6.99958864
vioscreen_line_gi
338.91952050000003
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
960.7249144
vioscreen_lycopene
8791.024658
vioscreen_lysine
6.151589255
vioscreen_m_egg
1.001890418
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.146273971
vioscreen_m_meat
1.308739733
vioscreen_m_mpf
2.828548066
vioscreen_m_nutsd
0.62728769
vioscreen_m_organ
0.0
vioscreen_m_poult
1.3735615769999998
vioscreen_m_soy
0.082410959
vioscreen_magnes
337.5110231
vioscreen_maltitol
0.0
vioscreen_maltose
0.951479392
vioscreen_mangan
1.898438336
vioscreen_mannitol
0.25824658100000003
vioscreen_methhis3
11.43454891
vioscreen_methion
2.038082259
vioscreen_mfa141
0.12479451800000001
vioscreen_mfa161
1.179369783
vioscreen_mfa181
26.49904484
vioscreen_mfa201
0.202027371
vioscreen_mfa221
0.005726027
vioscreen_mfatot
28.22240743
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
7.145973352
vioscreen_nccglbr
116.82453980000001
vioscreen_nccglgr
81.71520762
vioscreen_niacin
18.424847500000002
vioscreen_niacineq
35.08339844
vioscreen_nitrogen
13.44934182
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5416440359999999
vioscreen_oxalic
114.1375321
vioscreen_oxalicm
92.92193921
vioscreen_pantothe
6.557644612000001
vioscreen_pectins
2.181287792
vioscreen_pfa182
11.72191781
vioscreen_pfa183
1.47783571
vioscreen_pfa184
0.001123288
vioscreen_pfa204
0.156712341
vioscreen_pfa205
0.010219177
vioscreen_pfa225
0.016219178
vioscreen_pfa226
0.036657535
vioscreen_pfatot
13.49506903
vioscreen_phenylal
3.948684985
vioscreen_phosphor
1567.9375
vioscreen_phytic
415.0698202
vioscreen_pinitol
0.006438356
vioscreen_potass
3191.105137
vioscreen_procdate
10/28/15
vioscreen_proline
6.207534915
vioscreen_protanim
68.51150471
vioscreen_protein
84.20811751
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
15.69665695
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
564.0
vioscreen_retinol
634.2788527
vioscreen_rgrain
2.1816712259999997
vioscreen_ribofla
2.740520655
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.71238
vioscreen_satoco
0.0
vioscreen_selenium
106.3969713
vioscreen_serine
4.314492923
vioscreen_sfa100
1.070438416
vioscreen_sfa120
1.563041123
vioscreen_sfa140
4.617835309
vioscreen_sfa160
18.61972656
vioscreen_sfa170
0.11104109300000001
vioscreen_sfa180
7.848685654
vioscreen_sfa200
0.10556163
vioscreen_sfa220
0.125972601
vioscreen_sfa40
1.102246595
vioscreen_sfa60
0.88169865
vioscreen_sfa80
0.890082205
vioscreen_sfatot
37.38276167
vioscreen_sodium
3140.771575
vioscreen_sorbitol
0.124082194
vioscreen_srvid
17130.0
vioscreen_starch
50.84517872
vioscreen_started
2/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.70452162
vioscreen_sweet_servings
0.16438
vioscreen_tagatose
0.781123248
vioscreen_tfa161t
0.058136979000000005
vioscreen_tfa181t
1.8106849980000002
vioscreen_tfa182t
0.5116986
vioscreen_tgrain
2.7531231610000004
vioscreen_thiamin
1.223534237
vioscreen_threonin
3.407561336
vioscreen_time
23.0
vioscreen_totaltfa
2.64016431
vioscreen_totcla
0.25594520000000004
vioscreen_totfolat
260.23484590000004
vioscreen_totsugar
89.61385916
vioscreen_tryptoph
1.000493047
vioscreen_tyrosine
3.377479867
vioscreen_user_id
17130.0
vioscreen_v_drkgr
0.020273972
vioscreen_v_orange
0.18961643600000003
vioscreen_v_other
0.508054801
vioscreen_v_potato
0.34931506799999995
vioscreen_v_starcy
0.06106849599999999
vioscreen_v_tomato
0.524328739
vioscreen_v_total
1.652821998
vioscreen_valine
4.731013886
vioscreen_veg5_day
2.1
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
3.3
vioscreen_visit
1.0
vioscreen_vita_iu
8418.729452
vioscreen_vita_rae
949.3309932
vioscreen_vita_re
1264.38339
vioscreen_vitb12
6.517671099
vioscreen_vitb6
1.5161642830000002
vioscreen_vitc
65.32609696
vioscreen_vitd
14.06383508
vioscreen_vitd2
0.0015616439999999998
vioscreen_vitd3
14.06232877
vioscreen_vitd_iu
562.5534033
vioscreen_vite_iu
10.61627381
vioscreen_vitk
48.264849100000006
vioscreen_water
2084.8083899999997
vioscreen_weight
Not provided
vioscreen_wgrain
0.5714521020000001
vioscreen_whole_grain_servings
0.37104000000000004
vioscreen_xylitol
0.009671231
vioscreen_zinc
10.82221947
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
95.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)