American Gut Project; 10317.000029192
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633287
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-05T17:27:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029192
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
30.0
age_corrected
30.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29192
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1985.0
bmi
71.61
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-07
collection month
July
collection season
Summer
collection time
16:20
collection_timestamp
2015-07-07 16:20
consume_animal_products_abx
Yes
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southwest
elevation
358.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
dc92a4b6beaf4d8195982d6b4d31fda0d32c57369db9f9980d02eab6d6050cbfa1ea7a9429f53d25427da990dc53a83071def0b92e7a9adfdf80c4cbe8c71ec1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.3
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-97.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029192
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
OK
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
43f71c9658b3361a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.432082168
vioscreen_a_cal
51.75115047
vioscreen_acesupot
80.48701306
vioscreen_activity_level
Not provided
vioscreen_add_sug
20.39882144
vioscreen_addsugar
74.41538956
vioscreen_adsugtot
69.59410852
vioscreen_age
215.0
vioscreen_alanine
7.189425701
vioscreen_alcohol
6.40539718
vioscreen_alcohol_servings
0.43208
vioscreen_alphacar
3160.840068
vioscreen_alphtoce
36.11394478
vioscreen_alphtoco
22.82860659
vioscreen_arginine
8.085342867
vioscreen_ash
33.30087222
vioscreen_aspartam
323.4442209
vioscreen_aspartic
13.662216399999998
vioscreen_avcarb
307.58762839999997
vioscreen_bcodeid
Not provided
vioscreen_betacar
10680.43425
vioscreen_betacryp
148.8062607
vioscreen_betaine
270.0173373
vioscreen_betatoco
0.6117259820000001
vioscreen_biochana
0.01679452
vioscreen_bmi
Not provided
vioscreen_caffeine
324.2999358
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.16888
vioscreen_calcium_servings
6.39151
vioscreen_calories
2764.811815
vioscreen_carbo
345.8942209
vioscreen_cholest
299.36434080000004
vioscreen_choline
570.110488
vioscreen_clac9t11
0.09906849300000001
vioscreen_clat10c12
0.021095889
vioscreen_copper
2.666958744
vioscreen_coumest
0.17912328
vioscreen_cystine
1.84219168
vioscreen_d_cheese
0.727835626
vioscreen_d_milk
1.6348766590000001
vioscreen_d_tot_soym
3.168876752
vioscreen_d_total
3.168876752
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
1.473424457
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.909753251
vioscreen_discfat_oil
30.16800086
vioscreen_discfat_sol
39.01572667
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000986301
vioscreen_f_citmlb
0.34627399200000003
vioscreen_f_nj_citmlb
0.341753419
vioscreen_f_nj_other
1.4379178819999998
vioscreen_f_nj_total
1.779698704
vioscreen_f_other
1.5807946609999999
vioscreen_f_total
1.927095931
vioscreen_fat
89.70240796
vioscreen_fiber
38.18508669
vioscreen_fibh2o
13.42550567
vioscreen_fibinso
24.78194028
vioscreen_finished
6/19/15
vioscreen_fish_servings
3.9271199999999995
vioscreen_fol_deqv
816.8547945
vioscreen_fol_nat
309.4829195
vioscreen_fol_syn
298.3815497
vioscreen_formontn
0.004027397
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.19817
vioscreen_frt5_day
2.2
vioscreen_frtsumm
3.9
vioscreen_fructose
24.75312232
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
5.103123662
vioscreen_g_total
9.580054045
vioscreen_g_whl
4.4769036280000005
vioscreen_galactos
1.165314891
vioscreen_gammtoco
14.18021993
vioscreen_gender
false
vioscreen_genistn
1.389561483
vioscreen_glac
143.9648009
vioscreen_gltc
159.8123395
vioscreen_glucose
22.57654912
vioscreen_glutamic
28.16895869
vioscreen_glycine
6.168712543
vioscreen_glycitn
0.702246595
vioscreen_grams
6035.993151
vioscreen_hei2010_dairy
8.8
vioscreen_hei2010_empty_calories
16.1
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
4.4
vioscreen_hei2010_greens_beans
3.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.8
vioscreen_hei2010_score
79.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
4.8
vioscreen_hei_fruit
4.4
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.1
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
81.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
4.076247124
vioscreen_inositol
0.094356161
vioscreen_iron
26.13835884
vioscreen_isoleuc
6.8840010970000005
vioscreen_isomalt
0.0
vioscreen_joules
11567.9726
vioscreen_juice_servings
0.29481999999999997
vioscreen_lactitol
0.0
vioscreen_lactose
35.40391695
vioscreen_legumes
0.106191787
vioscreen_leucine
11.7966021
vioscreen_line_gi
692.6941353
vioscreen_low_fat_dairy_serving
0.97414
vioscreen_lutzeax
3960.3739729999998
vioscreen_lycopene
7688.266438
vioscreen_lysine
10.86098566
vioscreen_m_egg
0.014493151000000001
vioscreen_m_fish_hi
0.8021917470000001
vioscreen_m_fish_lo
1.44490415
vioscreen_m_frank
1.993040989
vioscreen_m_meat
1.7727947080000002
vioscreen_m_mpf
9.491836338999999
vioscreen_m_nutsd
1.7261917740000001
vioscreen_m_organ
0.0
vioscreen_m_poult
3.478959091
vioscreen_m_soy
0.097178086
vioscreen_magnes
672.2265838999999
vioscreen_maltitol
0.0
vioscreen_maltose
4.761506716
vioscreen_mangan
8.453998555
vioscreen_mannitol
0.8140273
vioscreen_methhis3
33.80320259
vioscreen_methion
3.509561952
vioscreen_mfa141
0.125506853
vioscreen_mfa161
1.286493171
vioscreen_mfa181
32.03134899
vioscreen_mfa201
0.49630135299999995
vioscreen_mfa221
0.10695890699999999
vioscreen_mfatot
34.33991866
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.34205774
vioscreen_nccglbr
237.6343536
vioscreen_nccglgr
166.2157534
vioscreen_niacin
47.93479238
vioscreen_niacineq
76.23634953
vioscreen_nitrogen
24.20772421
vioscreen_non_fried_fish_servings
3.9271199999999995
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.439890739
vioscreen_oxalic
346.5627354
vioscreen_oxalicm
378.162286
vioscreen_pantothe
13.273618099999998
vioscreen_pectins
4.417999853
vioscreen_pfa182
18.06309798
vioscreen_pfa183
1.9338353819999998
vioscreen_pfa184
0.026876711
vioscreen_pfa204
0.22238353600000002
vioscreen_pfa205
0.133917811
vioscreen_pfa225
0.073945205
vioscreen_pfa226
0.27378084399999997
vioscreen_pfatot
20.87441005
vioscreen_phenylal
6.469233599
vioscreen_phosphor
2511.256507
vioscreen_phytic
1217.930908
vioscreen_pinitol
0.015150683
vioscreen_potass
4982.9253420000005
vioscreen_procdate
10/28/15
vioscreen_proline
9.448027478
vioscreen_protanim
109.6404003
vioscreen_protein
149.5168236
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.86448791
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
382.0
vioscreen_retinol
1032.051199
vioscreen_rgrain
3.864602954
vioscreen_ribofla
3.560657574
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.1291
vioscreen_satoco
21.08041123
vioscreen_selenium
226.52814640000003
vioscreen_serine
6.759781009
vioscreen_sfa100
0.512027396
vioscreen_sfa120
1.003232857
vioscreen_sfa140
2.396986034
vioscreen_sfa160
14.51988843
vioscreen_sfa170
0.11934248
vioscreen_sfa180
5.822602071
vioscreen_sfa200
0.24972601100000003
vioscreen_sfa220
0.34616437899999997
vioscreen_sfa40
0.537178102
vioscreen_sfa60
0.298164389
vioscreen_sfa80
0.27536984800000003
vioscreen_sfatot
26.65968804
vioscreen_sodium
5623.097945
vioscreen_sorbitol
1.322547975
vioscreen_srvid
18939.0
vioscreen_starch
133.5943921
vioscreen_started
6/19/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.08575342300000001
vioscreen_sucrlose
0.0
vioscreen_sucrose
65.40932149
vioscreen_sweet_servings
0.32603000000000004
vioscreen_tagatose
11.6072881
vioscreen_tfa161t
0.06260273599999999
vioscreen_tfa181t
2.109561952
vioscreen_tfa182t
0.376712371
vioscreen_tgrain
8.587753505
vioscreen_thiamin
2.714657133
vioscreen_threonin
5.956767042999999
vioscreen_time
27.0
vioscreen_totaltfa
2.674520414
vioscreen_totcla
0.121041107
vioscreen_totfolat
607.8646404
vioscreen_totsugar
155.6251498
vioscreen_tryptoph
1.69876709
vioscreen_tyrosine
5.281424912
vioscreen_user_id
18939.0
vioscreen_v_drkgr
0.273534257
vioscreen_v_orange
0.672465745
vioscreen_v_other
0.8241917440000001
vioscreen_v_potato
0.603479422
vioscreen_v_starcy
0.15342465800000002
vioscreen_v_tomato
0.416821916
vioscreen_v_total
2.9439175539999995
vioscreen_valine
7.76052012
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
23997.04932
vioscreen_vita_rae
2059.989897
vioscreen_vita_re
3087.927055
vioscreen_vitb12
9.707288099
vioscreen_vitb6
3.7266571460000004
vioscreen_vitc
126.8244007
vioscreen_vitd
13.8020548
vioscreen_vitd2
0.00060274
vioscreen_vitd3
13.80150631
vioscreen_vitd_iu
552.0821917999999
vioscreen_vite_iu
40.93092894
vioscreen_vitk
216.1825557
vioscreen_water
5434.519521
vioscreen_weight
Not provided
vioscreen_wgrain
4.723040855
vioscreen_whole_grain_servings
4.4769
vioscreen_xylitol
0.034986302999999996
vioscreen_zinc
23.95429955
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
213.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)