10317.000027911; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633918
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T22:50:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027911
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27911
antibiotic_history
Year
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1969.0
bmi
37.3
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-26
collection month
July
collection season
Summer
collection time
08:45
collection_timestamp
2015-07-26 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
774.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
182.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Rarely (less than once/week)
host common name
human
host subject id
b1c3b38471c2846e58d9651eef13f9381f36613ed236e570fc1f53caa9be1f69f1e4f62931506a526375b5f892c8c2556e325266879e98a7b3f2a13ce8715f46
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
47.5
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-117.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027911
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
688e6b3dde4f96aa
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.554465767
vioscreen_a_cal
76.03687928
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.48295865
vioscreen_addsugar
19.22750696
vioscreen_adsugtot
15.26556213
vioscreen_age
215.0
vioscreen_alanine
4.053177507
vioscreen_alcohol
7.78602713
vioscreen_alcohol_servings
0.55447
vioscreen_alphacar
40.44243365
vioscreen_alphtoce
11.33668531
vioscreen_alphtoco
9.290027023
vioscreen_arginine
5.207616853
vioscreen_ash
16.326934400000003
vioscreen_aspartam
607.0601884
vioscreen_aspartic
7.562164892
vioscreen_avcarb
152.8383455
vioscreen_bcodeid
Not provided
vioscreen_betacar
1544.9010269999999
vioscreen_betacryp
16.94537002
vioscreen_betaine
91.03052226
vioscreen_betatoco
0.5520821770000001
vioscreen_biochana
0.004219178
vioscreen_bmi
Not provided
vioscreen_caffeine
172.54482019999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.74247
vioscreen_calcium_servings
2.37167
vioscreen_calories
1673.8676369999998
vioscreen_carbo
171.7211366
vioscreen_cholest
188.9058861
vioscreen_choline
284.6379923
vioscreen_clac9t11
0.069890406
vioscreen_clat10c12
0.017397261
vioscreen_copper
1.442328801
vioscreen_coumest
0.088356164
vioscreen_cystine
1.059589125
vioscreen_d_cheese
0.581287666
vioscreen_d_milk
0.158876706
vioscreen_d_tot_soym
0.742465753
vioscreen_d_total
0.742465753
vioscreen_d_yogurt
0.0
vioscreen_daidzein
12.10429955
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.423479305
vioscreen_discfat_oil
18.92252114
vioscreen_discfat_sol
27.94526167
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.009561644000000001
vioscreen_f_nj_citmlb
0.00509589
vioscreen_f_nj_other
0.295452087
vioscreen_f_nj_total
0.300575382
vioscreen_f_other
0.295452087
vioscreen_f_total
0.30506853100000003
vioscreen_fat
70.31403575
vioscreen_fiber
18.70923186
vioscreen_fibh2o
5.793315229
vioscreen_fibinso
12.94353462
vioscreen_finished
7/25/15
vioscreen_fish_servings
0.37115
vioscreen_fol_deqv
374.5200342
vioscreen_fol_nat
186.3228168
vioscreen_fol_syn
110.68091820000001
vioscreen_formontn
0.0019178079999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.19817
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.6
vioscreen_fructose
7.0008769
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
4.69123301
vioscreen_g_total
6.192273785
vioscreen_g_whl
1.501068701
vioscreen_galactos
0.077369862
vioscreen_gammtoco
12.31419093
vioscreen_gender
false
vioscreen_genistn
16.55427547
vioscreen_glac
77.80485338
vioscreen_gltc
84.01984161
vioscreen_glucose
7.887671233
vioscreen_glutamic
15.3013712
vioscreen_glycine
3.880850345
vioscreen_glycitn
2.052657621
vioscreen_grams
3234.14863
vioscreen_hei2010_dairy
3.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.5
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
4.8
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
6.0
vioscreen_hei2010_score
63.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
3.6
vioscreen_hei2010_whole_fruit
2.2
vioscreen_hei2010_whole_grains
6.0
vioscreen_hei_drk_g_org_veg_leg
2.4
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.4
vioscreen_hei_non_juice_frt
2.2
vioscreen_hei_oils
9.4
vioscreen_hei_sat_fat
5.9
vioscreen_hei_score
64.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
18.0
vioscreen_hei_veg
3.6
vioscreen_hei_whl_grains
3.0
vioscreen_height
Not provided
vioscreen_histidin
2.2833424190000002
vioscreen_inositol
0.032821917
vioscreen_iron
13.89315069
vioscreen_isoleuc
3.589397608
vioscreen_isomalt
0.0
vioscreen_joules
7003.456848999999
vioscreen_juice_servings
0.00896
vioscreen_lactitol
0.0
vioscreen_lactose
2.631013551
vioscreen_legumes
0.101315067
vioscreen_leucine
6.240959439
vioscreen_line_gi
322.57226030000004
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2392.862842
vioscreen_lycopene
4950.259589
vioscreen_lysine
5.208465325
vioscreen_m_egg
0.26082190899999996
vioscreen_m_fish_hi
0.21147945899999998
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.823589001
vioscreen_m_meat
2.389643923
vioscreen_m_mpf
4.476958142
vioscreen_m_nutsd
2.224246676
vioscreen_m_organ
0.0
vioscreen_m_poult
1.052246595
vioscreen_m_soy
1.013945195
vioscreen_magnes
335.77290239999996
vioscreen_maltitol
0.0
vioscreen_maltose
2.824411053
vioscreen_mangan
5.003973472
vioscreen_mannitol
0.142630141
vioscreen_methhis3
18.22967011
vioscreen_methion
1.721123515
vioscreen_mfa141
0.094082192
vioscreen_mfa161
1.011123365
vioscreen_mfa181
25.45479452
vioscreen_mfa201
0.33353426199999997
vioscreen_mfa221
0.04468493
vioscreen_mfatot
27.24671447
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.838164196000001
vioscreen_nccglbr
118.0838506
vioscreen_nccglgr
82.59700343
vioscreen_niacin
22.13177975
vioscreen_niacineq
36.44273598
vioscreen_nitrogen
13.82523143
vioscreen_non_fried_fish_servings
0.37115
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.017863151
vioscreen_oxalic
252.94171659999998
vioscreen_oxalicm
269.0925728
vioscreen_pantothe
4.110411093
vioscreen_pectins
2.363808159
vioscreen_pfa182
14.81071276
vioscreen_pfa183
0.867315005
vioscreen_pfa184
0.01049315
vioscreen_pfa204
0.095452055
vioscreen_pfa205
0.036712333
vioscreen_pfa225
0.029068492
vioscreen_pfa226
0.075342466
vioscreen_pfatot
16.009779
vioscreen_phenylal
3.648493686
vioscreen_phosphor
1278.873459
vioscreen_phytic
1097.929538
vioscreen_pinitol
0.08389041300000001
vioscreen_potass
2038.7282530000002
vioscreen_procdate
10/28/15
vioscreen_proline
4.82654745
vioscreen_protanim
44.52810895
vioscreen_protein
83.43792273
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.91000107
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
264.0
vioscreen_retinol
171.7430544
vioscreen_rgrain
4.348027143
vioscreen_ribofla
1.5026574540000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.65918
vioscreen_satoco
1.003287705
vioscreen_selenium
113.4453125
vioscreen_serine
3.811287992
vioscreen_sfa100
0.34739722700000003
vioscreen_sfa120
0.600328712
vioscreen_sfa140
1.778657594
vioscreen_sfa160
11.58871335
vioscreen_sfa170
0.087945201
vioscreen_sfa180
4.860903722
vioscreen_sfa200
0.20016439800000002
vioscreen_sfa220
0.376684905
vioscreen_sfa40
0.39339725
vioscreen_sfa60
0.209452067
vioscreen_sfa80
0.16589040900000002
vioscreen_sfatot
21.08991733
vioscreen_sodium
3439.0010270000002
vioscreen_sorbitol
0.197178065
vioscreen_srvid
20230.0
vioscreen_starch
100.27302009999998
vioscreen_started
7/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
11.63893006
vioscreen_sweet_servings
0.36527
vioscreen_tagatose
0.33419176899999997
vioscreen_tfa161t
0.045643835
vioscreen_tfa181t
1.640575336
vioscreen_tfa182t
0.258575335
vioscreen_tgrain
6.870302467
vioscreen_thiamin
1.376273963
vioscreen_threonin
3.031725573
vioscreen_time
21.0
vioscreen_totaltfa
1.974082299
vioscreen_totcla
0.08832877199999999
vioscreen_totfolat
297.0031464
vioscreen_totsugar
32.17060413
vioscreen_tryptoph
0.859123251
vioscreen_tyrosine
2.7583288739999996
vioscreen_user_id
20230.0
vioscreen_v_drkgr
0.218630145
vioscreen_v_orange
0.0
vioscreen_v_other
0.50284938
vioscreen_v_potato
0.215315058
vioscreen_v_starcy
0.030465752999999998
vioscreen_v_tomato
0.266191791
vioscreen_v_total
1.233753445
vioscreen_valine
4.008384057
vioscreen_veg5_day
1.6
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.5
vioscreen_visit
1.0
vioscreen_vita_iu
3195.533219
vioscreen_vita_rae
302.87624139999997
vioscreen_vita_re
434.0086901000001
vioscreen_vitb12
2.7780275110000003
vioscreen_vitb6
1.7331780419999998
vioscreen_vitc
32.89983412
vioscreen_vitd
2.817342345
vioscreen_vitd2
0.049753424000000004
vioscreen_vitd3
2.7675889939999996
vioscreen_vitd_iu
112.6936938
vioscreen_vite_iu
14.17725947
vioscreen_vitk
109.27461470000001
vioscreen_water
2900.39589
vioscreen_weight
Not provided
vioscreen_wgrain
2.522273986
vioscreen_whole_grain_servings
1.5010700000000001
vioscreen_xylitol
0.007041096
vioscreen_zinc
10.66180905
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
124.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)