American Gut Project; 10317.000031833
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634342
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:36Z
INSDC last update
2017-08-10T05:20:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031833
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
76.0
age_corrected
76.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031833
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1939.0
bmi
28.35
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-17
collection month
August
collection season
Summer
collection time
08:33
collection_timestamp
2015-08-17 08:33
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Not provided
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
806.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
6c336cd3ebdb6c8139ed15a530cd6de7abae68dd381fe0e153227344bfd178bf16dca0d7e3cf277930084568efd70bcfabf4acee374f25644d1b7bbda7cc5055
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
46.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031833
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ID
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
e98f05f8fc5389a3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.8007670359999999
vioscreen_a_cal
260.63570209999995
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.111479292
vioscreen_addsugar
21.72131582
vioscreen_adsugtot
18.20553564
vioscreen_age
215.0
vioscreen_alanine
1.505369756
vioscreen_alcohol
25.70227419
vioscreen_alcohol_servings
1.80077
vioscreen_alphacar
96.18493151
vioscreen_alphtoce
4.931698483
vioscreen_alphtoco
4.652438731
vioscreen_arginine
1.6135066619999998
vioscreen_ash
13.70235579
vioscreen_aspartam
0.0
vioscreen_aspartic
3.462082285
vioscreen_avcarb
145.0012414
vioscreen_bcodeid
Not provided
vioscreen_betacar
4697.983904
vioscreen_betacryp
370.578339
vioscreen_betaine
117.29396399999999
vioscreen_betatoco
0.080493154
vioscreen_biochana
0.00569863
vioscreen_bmi
Not provided
vioscreen_caffeine
94.73293022
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.56455
vioscreen_calcium_servings
2.76748
vioscreen_calories
1125.4756849999999
vioscreen_carbo
162.38763909999997
vioscreen_cholest
140.9403789
vioscreen_choline
301.89043239999995
vioscreen_clac9t11
0.032328768
vioscreen_clat10c12
0.002493151
vioscreen_copper
0.816958911
vioscreen_coumest
0.071013699
vioscreen_cystine
0.381698608
vioscreen_d_cheese
0.043534245
vioscreen_d_milk
1.521013652
vioscreen_d_tot_soym
1.564547939
vioscreen_d_total
1.564547939
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.081479451
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.47934248399999996
vioscreen_discfat_oil
6.063917353
vioscreen_discfat_sol
9.458110151
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000849315
vioscreen_f_citmlb
1.3635616769999999
vioscreen_f_nj_citmlb
0.612109626
vioscreen_f_nj_other
0.759205439
vioscreen_f_nj_total
1.371342406
vioscreen_f_other
0.759205439
vioscreen_f_total
2.122794373
vioscreen_fat
21.25676637
vioscreen_fiber
17.38372485
vioscreen_fibh2o
5.172958917
vioscreen_fibinso
12.21709787
vioscreen_finished
8/15/15
vioscreen_fish_servings
0.40731
vioscreen_fol_deqv
655.8880565000001
vioscreen_fol_nat
302.62345889999995
vioscreen_fol_syn
207.79071059999998
vioscreen_formontn
0.00060274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.2
vioscreen_fructose
22.83202857
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.319369862
vioscreen_g_total
1.784958931
vioscreen_g_whl
1.465588881
vioscreen_galactos
0.21742468
vioscreen_gammtoco
2.428822139
vioscreen_gender
false
vioscreen_genistn
0.059205481
vioscreen_glac
72.82532106
vioscreen_gltc
79.47693707
vioscreen_glucose
25.05605736
vioscreen_glutamic
6.784465299
vioscreen_glycine
1.1840000940000002
vioscreen_glycitn
0.000191781
vioscreen_grams
2920.765411
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
14.3
vioscreen_hei2010_fatty_acids
4.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
2.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.2
vioscreen_hei2010_sea_foods_plant_protiens
3.6
vioscreen_hei2010_sodium
9.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
8.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
5.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.5
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
72.5
vioscreen_hei_sodium
7.3
vioscreen_hei_sol_fat_alc_add_sug
8.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.3
vioscreen_height
Not provided
vioscreen_histidin
0.8766028
vioscreen_inositol
0.402054836
vioscreen_iron
13.20353569
vioscreen_isoleuc
1.488301651
vioscreen_isomalt
0.0
vioscreen_joules
4708.987671
vioscreen_juice_servings
1.5029299999999999
vioscreen_lactitol
0.0
vioscreen_lactose
19.27211045
vioscreen_legumes
0.10178082599999999
vioscreen_leucine
2.635096051
vioscreen_line_gi
447.8086473
vioscreen_low_fat_dairy_serving
1.5006
vioscreen_lutzeax
7189.808219
vioscreen_lycopene
2204.284932
vioscreen_lysine
2.181013719
vioscreen_m_egg
0.572273986
vioscreen_m_fish_hi
0.163780819
vioscreen_m_fish_lo
0.06838355900000001
vioscreen_m_frank
0.031671234
vioscreen_m_meat
0.152136993
vioscreen_m_mpf
0.41597260799999997
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
274.66941349999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.666026996
vioscreen_mangan
2.767478797
vioscreen_mannitol
0.10254793599999999
vioscreen_methhis3
1.222273986
vioscreen_methion
0.706712362
vioscreen_mfa141
0.037780824
vioscreen_mfa161
0.317013654
vioscreen_mfa181
8.067672437
vioscreen_mfa201
0.068794522
vioscreen_mfa221
0.035287672
vioscreen_mfatot
8.564027718
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
4.652438731
vioscreen_nccglbr
100.3242402
vioscreen_nccglgr
70.1815336
vioscreen_niacin
14.19347977
vioscreen_niacineq
20.83805383
vioscreen_nitrogen
6.055890142999999
vioscreen_non_fried_fish_servings
0.40731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.554520573
vioscreen_oxalic
208.29959330000003
vioscreen_oxalicm
227.93270550000003
vioscreen_pantothe
4.385041203
vioscreen_pectins
3.1138905980000002
vioscreen_pfa182
2.862082285
vioscreen_pfa183
0.457671241
vioscreen_pfa184
0.006465753
vioscreen_pfa204
0.049863015999999996
vioscreen_pfa205
0.027315068999999997
vioscreen_pfa225
0.009150685
vioscreen_pfa226
0.054000003
vioscreen_pfatot
3.478082192
vioscreen_phenylal
1.5757807480000001
vioscreen_phosphor
874.9050514
vioscreen_phytic
306.055244
vioscreen_pinitol
0.011013698999999998
vioscreen_potass
2687.548288
vioscreen_procdate
10/28/15
vioscreen_proline
2.485150565
vioscreen_protanim
19.77109509
vioscreen_protein
37.96556346
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.19462891
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
198.0
vioscreen_retinol
437.35278250000005
vioscreen_rgrain
0.754876625
vioscreen_ribofla
1.977890224
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.2102700000000002
vioscreen_satoco
0.0
vioscreen_selenium
50.99725492
vioscreen_serine
1.769205506
vioscreen_sfa100
0.182630168
vioscreen_sfa120
0.20443836399999998
vioscreen_sfa140
0.6269588939999999
vioscreen_sfa160
4.0030407210000005
vioscreen_sfa170
0.054410966
vioscreen_sfa180
1.4209039559999999
vioscreen_sfa200
0.042493145999999996
vioscreen_sfa220
0.016821917
vioscreen_sfa40
0.176520549
vioscreen_sfa60
0.118054795
vioscreen_sfa80
0.08578082599999999
vioscreen_sfatot
6.998548533999999
vioscreen_sodium
1324.164555
vioscreen_sorbitol
0.289424656
vioscreen_srvid
20412.0
vioscreen_starch
32.09978596
vioscreen_started
8/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.0260274
vioscreen_sweet_servings
0.07123
vioscreen_tagatose
0.0074520540000000005
vioscreen_tfa161t
0.005643835
vioscreen_tfa181t
0.501972606
vioscreen_tfa182t
0.060520548
vioscreen_tgrain
2.221753431
vioscreen_thiamin
1.0253699729999999
vioscreen_threonin
1.301260334
vioscreen_time
23.0
vioscreen_totaltfa
0.606849273
vioscreen_totcla
0.034986302999999996
vioscreen_totfolat
510.4142551
vioscreen_totsugar
84.12221212
vioscreen_tryptoph
0.39915069200000003
vioscreen_tyrosine
1.250821968
vioscreen_user_id
20412.0
vioscreen_v_drkgr
0.474547964
vioscreen_v_orange
0.001260274
vioscreen_v_other
0.9312876240000001
vioscreen_v_potato
0.032356166
vioscreen_v_starcy
0.12802740599999998
vioscreen_v_tomato
0.26279451600000003
vioscreen_v_total
1.8302741059999998
vioscreen_valine
1.8234247909999999
vioscreen_veg5_day
3.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.6
vioscreen_visit
1.0
vioscreen_vita_iu
9674.684932
vioscreen_vita_rae
848.3007705
vioscreen_vita_re
1259.2476880000002
vioscreen_vitb12
4.066301236
vioscreen_vitb6
1.779753385
vioscreen_vitc
202.7079195
vioscreen_vitd
6.892657722
vioscreen_vitd2
0.000273973
vioscreen_vitd3
6.892383481
vioscreen_vitd_iu
275.70630889999995
vioscreen_vite_iu
6.909067316000001
vioscreen_vitk
268.2056507
vioscreen_water
2665.707363
vioscreen_weight
Not provided
vioscreen_wgrain
1.466849215
vioscreen_whole_grain_servings
1.46559
vioscreen_xylitol
0.041917814
vioscreen_zinc
8.510328152
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)