American Gut Project; 10317.000026441
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632735
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:33Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026441
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26441
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
29.18
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
04/05/2015
collection month
April
collection season
Spring
collection time
09:00
collection_timestamp
2015-04-05 09:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
78.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
cf799d7396e0db89a00eba97946bfa961d4a223d90746dae1b9d843d1567f66393316afef3ec94f313ac730620f58d68f06ef2e5b6fd3834f525862502bf5b10
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
32.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.1
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026441
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Not provided
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
a54d4bf294cc7c4d
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0018630139999999999
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
12.40783524
vioscreen_addsugar
58.43531678
vioscreen_adsugtot
51.38107342
vioscreen_age
215.0
vioscreen_alanine
2.27156163
vioscreen_alcohol
0.020465754
vioscreen_alcohol_servings
0.00186
vioscreen_alphacar
798.9000856
vioscreen_alphtoce
14.71849048
vioscreen_alphtoco
13.77605282
vioscreen_arginine
3.2616435010000004
vioscreen_ash
17.5496174
vioscreen_aspartam
0.0
vioscreen_aspartic
5.169123903
vioscreen_avcarb
187.06654540000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
15428.86027
vioscreen_betacryp
191.8815497
vioscreen_betaine
198.3090539
vioscreen_betatoco
0.46673972799999996
vioscreen_biochana
0.00619178
vioscreen_bmi
Not provided
vioscreen_caffeine
189.1622217
vioscreen_calcium
true
vioscreen_calcium_avg
142.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
2
vioscreen_calcium_from_dairy_servings
1.51614
vioscreen_calcium_servings
4.00159
vioscreen_calories
1602.05274
vioscreen_carbo
215.0708262
vioscreen_cholest
45.28964576
vioscreen_choline
215.33191349999998
vioscreen_clac9t11
0.029150682999999997
vioscreen_clat10c12
0.006767123000000001
vioscreen_copper
1.6257533240000002
vioscreen_coumest
0.036712327999999995
vioscreen_cystine
0.709342392
vioscreen_d_cheese
0.337698615
vioscreen_d_milk
0.17884931199999998
vioscreen_d_tot_soym
1.516137026
vioscreen_d_total
1.516137026
vioscreen_d_yogurt
0.999589058
vioscreen_daidzein
8.878932336
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.140191901
vioscreen_discfat_oil
36.41430597
vioscreen_discfat_sol
13.39654859
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000876712
vioscreen_f_citmlb
0.562356191
vioscreen_f_nj_citmlb
0.56216439
vioscreen_f_nj_other
0.926438423
vioscreen_f_nj_total
1.4886574940000001
vioscreen_f_other
0.926438423
vioscreen_f_total
1.488849295
vioscreen_fat
65.92739726
vioscreen_fiber
27.9984375
vioscreen_fibh2o
6.846603435
vioscreen_fibinso
21.17263083
vioscreen_finished
4/2/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
469.41994860000005
vioscreen_fol_nat
422.4720034
vioscreen_fol_syn
27.63380779
vioscreen_formontn
0.0038082190000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.0
vioscreen_fructose
19.73013832
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.3698081659999999
vioscreen_g_total
4.132054661000001
vioscreen_g_whl
2.762246495
vioscreen_galactos
1.4272603069999998
vioscreen_gammtoco
7.335261264
vioscreen_gender
false
vioscreen_genistn
9.859698068
vioscreen_glac
81.80520655
vioscreen_gltc
90.07153253
vioscreen_glucose
20.15898438
vioscreen_glutamic
11.291067800000002
vioscreen_glycine
2.090903922
vioscreen_glycitn
1.8413149480000002
vioscreen_grams
3415.5876710000002
vioscreen_hei2010_dairy
7.3
vioscreen_hei2010_empty_calories
19.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
92.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.3
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
7.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
88.3
vioscreen_hei_sodium
5.2
vioscreen_hei_sol_fat_alc_add_sug
19.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.332465687
vioscreen_inositol
0.099178084
vioscreen_iron
12.08761371
vioscreen_isoleuc
2.3450411030000002
vioscreen_isomalt
0.0
vioscreen_joules
6702.985616
vioscreen_juice_servings
0.00041
vioscreen_lactitol
0.0
vioscreen_lactose
18.24065577
vioscreen_legumes
0.11389041
vioscreen_leucine
4.167123288
vioscreen_line_gi
414.6619435
vioscreen_low_fat_dairy_serving
0.99959
vioscreen_lutzeax
22455.330140000002
vioscreen_lycopene
2714.7054789999997
vioscreen_lysine
3.171918143
vioscreen_m_egg
0.004767123
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.0
vioscreen_m_nutsd
2.248986315
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.7895889909999999
vioscreen_magnes
450.4139983
vioscreen_maltitol
0.0
vioscreen_maltose
3.4817810889999996
vioscreen_mangan
7.006136291000001
vioscreen_mannitol
0.24827400100000002
vioscreen_methhis3
0.021452055
vioscreen_methion
0.999150608
vioscreen_mfa141
0.036520548
vioscreen_mfa161
0.5603561189999999
vioscreen_mfa181
29.11796875
vioscreen_mfa201
0.307999974
vioscreen_mfa221
0.022712331000000002
vioscreen_mfatot
30.25706871
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
13.77605282
vioscreen_nccglbr
138.1105094
vioscreen_nccglgr
96.59419949
vioscreen_niacin
12.05920511
vioscreen_niacineq
22.25879441
vioscreen_nitrogen
9.21462904
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.349178116
vioscreen_oxalic
837.4117295
vioscreen_oxalicm
901.7785103
vioscreen_pantothe
4.241342707
vioscreen_pectins
5.238658163
vioscreen_pfa182
12.65536976
vioscreen_pfa183
1.3424383290000002
vioscreen_pfa184
0.001260274
vioscreen_pfa204
0.009232876
vioscreen_pfa205
0.0026301370000000003
vioscreen_pfa225
0.002191781
vioscreen_pfa226
0.000849315
vioscreen_pfatot
14.04054607
vioscreen_phenylal
2.6712054530000002
vioscreen_phosphor
1180.7118150000001
vioscreen_phytic
935.4691780999999
vioscreen_pinitol
0.068821915
vioscreen_potass
3518.249315
vioscreen_procdate
10/28/15
vioscreen_proline
4.1176981889999995
vioscreen_protanim
17.25531491
vioscreen_protein
55.56526113
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.29224904
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
503.0
vioscreen_retinol
113.63994009999999
vioscreen_rgrain
1.507013692
vioscreen_ribofla
1.642766916
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.93603
vioscreen_satoco
0.0
vioscreen_selenium
79.82337329
vioscreen_serine
2.897369636
vioscreen_sfa100
0.308794518
vioscreen_sfa120
0.539095902
vioscreen_sfa140
1.330328787
vioscreen_sfa160
9.707973031
vioscreen_sfa170
0.043178085
vioscreen_sfa180
3.6577810630000003
vioscreen_sfa200
0.263506829
vioscreen_sfa220
0.376438381
vioscreen_sfa40
0.34753426299999995
vioscreen_sfa60
0.186273988
vioscreen_sfa80
0.154547955
vioscreen_sfatot
17.26912323
vioscreen_sodium
2272.6056510000003
vioscreen_sorbitol
0.17709588899999998
vioscreen_srvid
18429.0
vioscreen_starch
56.39808433
vioscreen_started
4/2/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.5072881
vioscreen_sweet_servings
0.7614
vioscreen_tagatose
8.813945446
vioscreen_tfa161t
0.024438359
vioscreen_tfa181t
0.562493144
vioscreen_tfa182t
0.255534258
vioscreen_tgrain
3.9411774939999997
vioscreen_thiamin
1.134109455
vioscreen_threonin
1.975287618
vioscreen_time
17.0
vioscreen_totaltfa
0.911287658
vioscreen_totcla
0.036136987999999995
vioscreen_totfolat
450.1056507
vioscreen_totsugar
112.9440176
vioscreen_tryptoph
0.612657604
vioscreen_tyrosine
2.0610686
vioscreen_user_id
18429.0
vioscreen_v_drkgr
1.504082165
vioscreen_v_orange
0.207835618
vioscreen_v_other
1.123479389
vioscreen_v_potato
0.02169863
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.529589049
vioscreen_v_total
3.3866853060000004
vioscreen_valine
2.9892875780000003
vioscreen_veg5_day
6.2
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
6.8
vioscreen_visit
1.0
vioscreen_vita_iu
26917.643839999997
vioscreen_vita_rae
1440.661644
vioscreen_vita_re
2767.682705
vioscreen_vitb12
1.740274006
vioscreen_vitb6
1.588164196
vioscreen_vitc
156.2627676
vioscreen_vitd
1.0863287940000002
vioscreen_vitd2
0.0
vioscreen_vitd3
1.0863287940000002
vioscreen_vitd_iu
43.45315176
vioscreen_vite_iu
20.55035451
vioscreen_vitk
953.0382705
vioscreen_water
3070.764041
vioscreen_weight
Not provided
vioscreen_wgrain
2.434164471
vioscreen_whole_grain_servings
2.76225
vioscreen_xylitol
0.038383567
vioscreen_zinc
8.979698871
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
77.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Occasionally (1-2 times/week)