American Gut Project; 10317.000026073
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632724
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026073
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26073
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
28.06
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-03-31
collection month
March
collection season
Spring
collection time
07:45
collection_timestamp
2015-03-31 07:45
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
44.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
d8c91d966b0e79c63575c2bf1ca811089c2e6f59c115850da307c43a39d0d4f9e3fea903d8a626f02f4f4d5d7f4da9fc7117333b148c82d8342d4ba550b09c59
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
41.8
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Not provided
longitude
-72.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000026073
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CT
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
6027cc3f7f36b01c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.17904109199999999
vioscreen_a_cal
20.57725947
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.7350412
vioscreen_addsugar
66.35331764
vioscreen_adsugtot
61.27841396
vioscreen_age
215.0
vioscreen_alanine
3.709342225
vioscreen_alcohol
2.700931413
vioscreen_alcohol_servings
0.17904
vioscreen_alphacar
4927.364726
vioscreen_alphtoce
16.52134391
vioscreen_alphtoco
15.25359054
vioscreen_arginine
4.2086843830000005
vioscreen_ash
31.64846961
vioscreen_aspartam
0.0
vioscreen_aspartic
7.705534299999999
vioscreen_avcarb
268.2437286
vioscreen_bcodeid
Not provided
vioscreen_betacar
23304.06849
vioscreen_betacryp
48.00681721
vioscreen_betaine
222.17465750000002
vioscreen_betatoco
0.635698794
vioscreen_biochana
0.014191782
vioscreen_bmi
Not provided
vioscreen_caffeine
32.71038367
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.7378099999999999
vioscreen_calcium_servings
3.8801400000000004
vioscreen_calories
2099.932705
vioscreen_carbo
302.8215111
vioscreen_cholest
309.0820205
vioscreen_choline
454.9163955
vioscreen_clac9t11
0.12265754599999999
vioscreen_clat10c12
0.024849313999999997
vioscreen_copper
2.351862659
vioscreen_coumest
0.014931508000000001
vioscreen_cystine
1.098027394
vioscreen_d_cheese
0.7260273970000001
vioscreen_d_milk
0.864410902
vioscreen_d_tot_soym
1.7378083530000001
vioscreen_d_total
1.7378083530000001
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.514904116
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.977041083
vioscreen_discfat_oil
13.73561376
vioscreen_discfat_sol
37.12233519
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0027397259999999996
vioscreen_f_citmlb
0.5016986170000001
vioscreen_f_nj_citmlb
0.5007123139999999
vioscreen_f_nj_other
1.345643846
vioscreen_f_nj_total
1.846356285
vioscreen_f_other
1.503753411
vioscreen_f_total
2.005424771
vioscreen_fat
69.05247218
vioscreen_fiber
34.55824326
vioscreen_fibh2o
9.429506903
vioscreen_fibinso
25.11465914
vioscreen_finished
3/30/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
647.9249143999999
vioscreen_fol_nat
467.77970889999995
vioscreen_fol_syn
105.9111301
vioscreen_formontn
0.0010136989999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
4.0
vioscreen_fructose
41.4136692
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.042109743
vioscreen_g_total
5.287178604
vioscreen_g_whl
3.245096452
vioscreen_galactos
0.40183561100000004
vioscreen_gammtoco
9.735042541
vioscreen_gender
false
vioscreen_genistn
0.7384932009999999
vioscreen_glac
124.3754709
vioscreen_gltc
138.8131528
vioscreen_glucose
38.84657267
vioscreen_glutamic
18.36222576
vioscreen_glycine
3.1605207889999996
vioscreen_glycitn
0.20249314
vioscreen_grams
6177.246575
vioscreen_hei2010_dairy
6.4
vioscreen_hei2010_empty_calories
15.9
vioscreen_hei2010_fatty_acids
1.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.1
vioscreen_hei2010_sea_foods_plant_protiens
3.8
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.5
vioscreen_hei_sat_fat
5.7
vioscreen_hei_score
72.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
15.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.1758085069999997
vioscreen_inositol
0.194849302
vioscreen_iron
19.75495907
vioscreen_isoleuc
3.6129310919999997
vioscreen_isomalt
0.0
vioscreen_joules
8786.115068000001
vioscreen_juice_servings
0.31816
vioscreen_lactitol
0.0
vioscreen_lactose
14.7224382
vioscreen_legumes
0.207369849
vioscreen_leucine
6.097287698
vioscreen_line_gi
728.355137
vioscreen_low_fat_dairy_serving
0.43485
vioscreen_lutzeax
6650.910274
vioscreen_lycopene
84311.13425
vioscreen_lysine
5.102932029
vioscreen_m_egg
0.813506829
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
1.327369836
vioscreen_m_meat
1.0562192320000001
vioscreen_m_mpf
3.164054473
vioscreen_m_nutsd
0.615178106
vioscreen_m_organ
0.0
vioscreen_m_poult
0.78046574
vioscreen_m_soy
0.160849313
vioscreen_magnes
480.272774
vioscreen_maltitol
0.0
vioscreen_maltose
2.950822052
vioscreen_mangan
6.2642190179999995
vioscreen_mannitol
1.729862913
vioscreen_methhis3
10.64479479
vioscreen_methion
1.669644123
vioscreen_mfa141
0.134246565
vioscreen_mfa161
1.225835596
vioscreen_mfa181
21.53137174
vioscreen_mfa201
0.216438314
vioscreen_mfa221
0.004328767
vioscreen_mfatot
23.37257866
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
15.234768300000002
vioscreen_nccglbr
201.300899
vioscreen_nccglgr
140.824497
vioscreen_niacin
23.56235552
vioscreen_niacineq
39.13706657
vioscreen_nitrogen
13.55312232
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.329808316
vioscreen_oxalic
412.8688356
vioscreen_oxalicm
416.6774401
vioscreen_pantothe
7.548382652000001
vioscreen_pectins
6.244164705
vioscreen_pfa182
10.40495907
vioscreen_pfa183
1.274931524
vioscreen_pfa184
0.001150685
vioscreen_pfa204
0.130027405
vioscreen_pfa205
0.009369863
vioscreen_pfa225
0.013917806999999999
vioscreen_pfa226
0.030931507
vioscreen_pfatot
11.92558728
vioscreen_phenylal
3.644931908
vioscreen_phosphor
1518.722945
vioscreen_phytic
1025.920548
vioscreen_pinitol
0.007917808
vioscreen_potass
5358.167808
vioscreen_procdate
10/28/15
vioscreen_proline
5.2492338
vioscreen_protanim
44.40440122
vioscreen_protein
83.72351241
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
39.31629388
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
509.0
vioscreen_retinol
434.36755139999997
vioscreen_rgrain
2.460438349
vioscreen_ribofla
2.2472052590000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.17781
vioscreen_satoco
0.041835618
vioscreen_selenium
124.4560574
vioscreen_serine
3.886438824
vioscreen_sfa100
0.6194520720000001
vioscreen_sfa120
0.723506729
vioscreen_sfa140
2.655725934
vioscreen_sfa160
14.20764394
vioscreen_sfa170
0.13794521199999998
vioscreen_sfa180
6.228985847000001
vioscreen_sfa200
0.11523287
vioscreen_sfa220
0.123232855
vioscreen_sfa40
0.767068523
vioscreen_sfa60
0.418493151
vioscreen_sfa80
0.276191795
vioscreen_sfatot
26.66405447
vioscreen_sodium
5884.932877
vioscreen_sorbitol
0.66983559
vioscreen_srvid
18395.0
vioscreen_starch
96.12112586
vioscreen_started
3/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
48.85236515
vioscreen_sweet_servings
0.9805799999999999
vioscreen_tagatose
2.847315122
vioscreen_tfa161t
0.051972606
vioscreen_tfa181t
1.580876933
vioscreen_tfa182t
0.363178117
vioscreen_tgrain
5.6604391860000005
vioscreen_thiamin
1.964191761
vioscreen_threonin
3.1829041360000003
vioscreen_time
34.0
vioscreen_totaltfa
2.0470412159999998
vioscreen_totcla
0.148575352
vioscreen_totfolat
573.6910958999999
vioscreen_totsugar
152.08665449999998
vioscreen_tryptoph
0.93443846
vioscreen_tyrosine
2.742739994
vioscreen_user_id
18395.0
vioscreen_v_drkgr
0.516739728
vioscreen_v_orange
1.0540822490000001
vioscreen_v_other
0.9058355459999999
vioscreen_v_potato
0.206054792
vioscreen_v_starcy
0.19693149899999998
vioscreen_v_tomato
3.8234247910000003
vioscreen_v_total
6.700300995
vioscreen_valine
4.124821409
vioscreen_veg5_day
10.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
13.4
vioscreen_visit
1.0
vioscreen_vita_iu
44437.2137
vioscreen_vita_rae
2583.683048
vioscreen_vita_re
4732.9945210000005
vioscreen_vitb12
4.053040721
vioscreen_vitb6
3.058246602
vioscreen_vitc
286.5903682
vioscreen_vitd
5.0733702780000005
vioscreen_vitd2
0.001150685
vioscreen_vitd3
5.07227432
vioscreen_vitd_iu
202.9348111
vioscreen_vite_iu
22.75729345
vioscreen_vitk
250.5922517
vioscreen_water
5716.638356
vioscreen_weight
Not provided
vioscreen_wgrain
3.2
vioscreen_whole_grain_servings
3.2451
vioscreen_xylitol
0.044739731
vioscreen_zinc
14.23054768
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
86.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)