American Gut Project; 10317.000030317
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634179
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-10T05:20:23Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030317
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000030317
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
24.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-07-26
collection month
July
collection season
Summer
collection time
15:15
collection_timestamp
2015-07-26 15:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
Netherlands
country of birth
Nigeria
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
8.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
Netherlands
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
b90b6c7c28dfcd45150ee41b468e8c9e3d8e764530c09b1a114cc80b1c493f43946f1f5c49fd34c798d1cb592dc7b3cc1a0715c57164374db8f0479580337935
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
3 months
latitude
52.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
4.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Other
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030317
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
ZH
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b034128218ea2bb6
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.279479458
vioscreen_a_cal
34.70635435
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.49671263
vioscreen_addsugar
12.62698657
vioscreen_adsugtot
10.513205000000001
vioscreen_age
215.0
vioscreen_alanine
2.193807858
vioscreen_alcohol
4.349287979
vioscreen_alcohol_servings
0.27948
vioscreen_alphacar
1168.17286
vioscreen_alphtoce
9.043861703
vioscreen_alphtoco
8.605477445
vioscreen_arginine
2.575725733
vioscreen_ash
12.1492629
vioscreen_aspartam
0.0
vioscreen_aspartic
4.009369649
vioscreen_avcarb
89.79978596
vioscreen_bcodeid
Not provided
vioscreen_betacar
4834.633218999999
vioscreen_betacryp
69.20897902
vioscreen_betaine
116.08609799999999
vioscreen_betatoco
0.20556164
vioscreen_biochana
0.007123287
vioscreen_bmi
Not provided
vioscreen_caffeine
239.23583050000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.63562
vioscreen_calcium_servings
1.51614
vioscreen_calories
1162.691524
vioscreen_carbo
104.0604452
vioscreen_cholest
142.54692849999998
vioscreen_choline
199.28159250000002
vioscreen_clac9t11
0.068410967
vioscreen_clat10c12
0.013589041000000001
vioscreen_copper
0.7983287240000001
vioscreen_coumest
0.175726026
vioscreen_cystine
0.606054729
vioscreen_d_cheese
0.213561635
vioscreen_d_milk
0.349890429
vioscreen_d_tot_soym
0.635616438
vioscreen_d_total
0.635616438
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.173671242
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.683342544
vioscreen_discfat_oil
36.389204299999996
vioscreen_discfat_sol
17.75846399
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.042520547
vioscreen_f_nj_citmlb
0.040082192
vioscreen_f_nj_other
0.11400000199999999
vioscreen_f_nj_total
0.154082207
vioscreen_f_other
0.11400000199999999
vioscreen_f_total
0.156520561
vioscreen_fat
61.86617081
vioscreen_fiber
14.26029939
vioscreen_fibh2o
5.147588693
vioscreen_fibinso
9.161615742999999
vioscreen_finished
7/26/15
vioscreen_fish_servings
2.05462
vioscreen_fol_deqv
223.9628853
vioscreen_fol_nat
152.7677868
vioscreen_fol_syn
41.86024722
vioscreen_formontn
0.000821918
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.3
vioscreen_fructose
5.618822239
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.971780855
vioscreen_g_total
3.8716987510000003
vioscreen_g_whl
1.899972576
vioscreen_galactos
0.206931504
vioscreen_gammtoco
3.492000548
vioscreen_gender
false
vioscreen_genistn
0.08832877199999999
vioscreen_glac
44.248022799999994
vioscreen_gltc
49.12872967
vioscreen_glucose
5.847616117
vioscreen_glutamic
8.512056534
vioscreen_glycine
1.96857559
vioscreen_glycitn
0.0060547940000000005
vioscreen_grams
2338.9003420000004
vioscreen_hei2010_dairy
4.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.7
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.2
vioscreen_hei_non_juice_frt
1.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
4.0
vioscreen_hei_score
73.0
vioscreen_hei_sodium
2.5
vioscreen_hei_sol_fat_alc_add_sug
19.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.19389013
vioscreen_inositol
0.055643839
vioscreen_iron
7.043204864
vioscreen_isoleuc
1.967725613
vioscreen_isomalt
0.0
vioscreen_joules
4864.700342
vioscreen_juice_servings
0.0049
vioscreen_lactitol
0.0
vioscreen_lactose
5.570493097000001
vioscreen_legumes
0.007917808
vioscreen_leucine
3.38397267
vioscreen_line_gi
200.93516699999998
vioscreen_low_fat_dairy_serving
0.07121
vioscreen_lutzeax
4478.432877
vioscreen_lycopene
2499.564384
vioscreen_lysine
3.04926022
vioscreen_m_egg
0.180986295
vioscreen_m_fish_hi
0.475726026
vioscreen_m_fish_lo
0.69501372
vioscreen_m_frank
0.11369863
vioscreen_m_meat
0.9199452020000001
vioscreen_m_mpf
2.785452396
vioscreen_m_nutsd
0.311726024
vioscreen_m_organ
0.0
vioscreen_m_poult
0.581068483
vioscreen_m_soy
0.000849315
vioscreen_magnes
208.5609375
vioscreen_maltitol
0.0
vioscreen_maltose
1.8472875309999999
vioscreen_mangan
3.107533578
vioscreen_mannitol
0.145917814
vioscreen_methhis3
10.26216422
vioscreen_methion
1.02627413
vioscreen_mfa141
0.037342471
vioscreen_mfa161
0.8689864490000001
vioscreen_mfa181
31.76685841
vioscreen_mfa201
0.24778080800000002
vioscreen_mfa221
0.071013699
vioscreen_mfatot
33.12757117
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.605477445
vioscreen_nccglbr
73.40438784
vioscreen_nccglgr
51.34209118
vioscreen_niacin
12.60355977
vioscreen_niacineq
20.75427547
vioscreen_nitrogen
7.472137200000001
vioscreen_non_fried_fish_servings
2.05462
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.048219195
vioscreen_oxalic
151.21174019999998
vioscreen_oxalicm
153.56193280000002
vioscreen_pantothe
3.707589095
vioscreen_pectins
1.721671159
vioscreen_pfa182
7.474411387000001
vioscreen_pfa183
0.790876666
vioscreen_pfa184
0.016465754
vioscreen_pfa204
0.06912328599999999
vioscreen_pfa205
0.070712333
vioscreen_pfa225
0.029013699
vioscreen_pfa226
0.141589052
vioscreen_pfatot
8.644000829
vioscreen_phenylal
1.920958804
vioscreen_phosphor
727.4911815
vioscreen_phytic
469.07457189999997
vioscreen_pinitol
0.004767123
vioscreen_potass
1699.45
vioscreen_procdate
10/28/15
vioscreen_proline
2.59725994
vioscreen_protanim
28.67044093
vioscreen_protein
45.86389127
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.19244034
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
260.0
vioscreen_retinol
156.2167808
vioscreen_rgrain
2.116520628
vioscreen_ribofla
1.146356118
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.71405
vioscreen_satoco
0.0
vioscreen_selenium
75.10398652
vioscreen_serine
1.9874520080000002
vioscreen_sfa100
0.330602777
vioscreen_sfa120
0.449808241
vioscreen_sfa140
1.301479475
vioscreen_sfa160
9.57835777
vioscreen_sfa170
0.0830411
vioscreen_sfa180
3.155205212
vioscreen_sfa200
0.183999947
vioscreen_sfa220
0.105287672
vioscreen_sfa40
0.387589086
vioscreen_sfa60
0.24704111199999998
vioscreen_sfa80
0.192109576
vioscreen_sfatot
16.16961553
vioscreen_sodium
1996.115753
vioscreen_sorbitol
0.17528766
vioscreen_srvid
20235.0
vioscreen_starch
53.18928189
vioscreen_started
7/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.010986328
vioscreen_sweet_servings
0.07123
vioscreen_tagatose
0.640082163
vioscreen_tfa161t
0.024438356
vioscreen_tfa181t
0.874191828
vioscreen_tfa182t
0.158712319
vioscreen_tgrain
3.90654832
vioscreen_thiamin
0.847616452
vioscreen_threonin
1.713808159
vioscreen_time
25.0
vioscreen_totaltfa
1.127561386
vioscreen_totcla
0.082410974
vioscreen_totfolat
194.62797519999998
vioscreen_totsugar
28.21638485
vioscreen_tryptoph
0.48915066700000004
vioscreen_tyrosine
1.507863
vioscreen_user_id
20235.0
vioscreen_v_drkgr
0.317671225
vioscreen_v_orange
0.203972615
vioscreen_v_other
0.6097534179999999
vioscreen_v_potato
0.09945206300000001
vioscreen_v_starcy
0.108465754
vioscreen_v_tomato
0.259232863
vioscreen_v_total
1.598520775
vioscreen_valine
2.2476711330000003
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
3.2
vioscreen_visit
1.0
vioscreen_vita_iu
9609.512329000001
vioscreen_vita_rae
610.6616866
vioscreen_vita_re
1065.104966
vioscreen_vitb12
2.340602927
vioscreen_vitb6
1.003753328
vioscreen_vitc
59.88024936
vioscreen_vitd
4.17504147
vioscreen_vitd2
0.0009589039999999999
vioscreen_vitd3
4.174055209
vioscreen_vitd_iu
167.00165880000003
vioscreen_vite_iu
12.8212088
vioscreen_vitk
205.9491866
vioscreen_water
2120.161815
vioscreen_weight
Not provided
vioscreen_wgrain
1.790109462
vioscreen_whole_grain_servings
1.8999700000000002
vioscreen_xylitol
0.013999998999999999
vioscreen_zinc
6.120820179
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)