American Gut Project; 10317.000011402
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632343
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-09T19:40:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000011402
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000011402
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1960.0
bmi
20.37
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-14
collection month
January
collection season
Winter
collection time
10:00
collection_timestamp
2015-01-14 10:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
15.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b19eb6505885b2a049bc19c8cf86eb9bce9defaeb191e285e6586c23a14ce69b82cdaf3b3b6f06602c3d5b6209eace3aff6eed8760935dea6f291f58262f1231
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
true
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000011402
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
RI
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
e70b74d7a3cb818b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.848712325
vioscreen_a_cal
83.3390411
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.584931507
vioscreen_addsugar
11.26936938
vioscreen_adsugtot
10.81246522
vioscreen_age
214.0
vioscreen_alanine
4.209506769
vioscreen_alcohol
11.90641053
vioscreen_alcohol_servings
0.8487100000000001
vioscreen_alphacar
4574.8075340000005
vioscreen_alphtoce
17.33693012
vioscreen_alphtoco
16.64964148
vioscreen_arginine
4.8323011419999995
vioscreen_ash
16.59931641
vioscreen_aspartam
15.97526086
vioscreen_aspartic
7.309069322999999
vioscreen_avcarb
62.86137628
vioscreen_bcodeid
Not provided
vioscreen_betacar
22325.00274
vioscreen_betacryp
24.80904324
vioscreen_betaine
87.09413527
vioscreen_betatoco
0.23273973899999997
vioscreen_biochana
0.003616438
vioscreen_bmi
Not provided
vioscreen_caffeine
103.4479131
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7.0
vioscreen_calcium_from_dairy_servings
0.062189999999999995
vioscreen_calcium_servings
1.2715100000000001
vioscreen_calories
1867.1491440000002
vioscreen_carbo
79.14208583
vioscreen_cholest
347.0094606
vioscreen_choline
387.15218319999997
vioscreen_clac9t11
0.12049316
vioscreen_clat10c12
0.034136989
vioscreen_copper
2.434410952
vioscreen_coumest
0.00769863
vioscreen_cystine
0.9001096959999999
vioscreen_d_cheese
0.0029315070000000003
vioscreen_d_milk
0.059150685
vioscreen_d_tot_soym
0.062191783
vioscreen_d_total
0.062191783
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.016958904
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.105315075
vioscreen_discfat_oil
70.82692637
vioscreen_discfat_sol
38.41104452
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007123289999999999
vioscreen_f_citmlb
0.21805476399999998
vioscreen_f_nj_citmlb
0.174739723
vioscreen_f_nj_other
0.37309587
vioscreen_f_nj_total
0.547835677
vioscreen_f_other
0.37309587
vioscreen_f_total
0.591178121
vioscreen_fat
133.96086259999998
vioscreen_fiber
16.28107074
vioscreen_fibh2o
4.19095877
vioscreen_fibinso
12.12695981
vioscreen_finished
11/15/14
vioscreen_fish_servings
4.55058
vioscreen_fol_deqv
303.535167
vioscreen_fol_nat
294.9053296
vioscreen_fol_syn
5.07783571
vioscreen_formontn
0.000767123
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.2
vioscreen_fructose
8.51564306
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.264136975
vioscreen_g_total
0.264136975
vioscreen_g_whl
0.0
vioscreen_galactos
0.05378082
vioscreen_gammtoco
5.8076439429999995
vioscreen_gender
false
vioscreen_genistn
0.010986302
vioscreen_glac
29.39608037
vioscreen_gltc
35.38397635
vioscreen_glucose
9.50249291
vioscreen_glutamic
11.08419307
vioscreen_glycine
3.8587399
vioscreen_glycitn
0.00005479999999999999
vioscreen_grams
3613.006507
vioscreen_hei2010_dairy
0.3
vioscreen_hei2010_empty_calories
18.8
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
2.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.7
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.0
vioscreen_hei_grains
0.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.3
vioscreen_hei_non_juice_frt
3.7
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
56.4
vioscreen_hei_sodium
3.7
vioscreen_hei_sol_fat_alc_add_sug
16.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.1465753419999998
vioscreen_inositol
0.0530137
vioscreen_iron
10.21731392
vioscreen_isoleuc
3.3301637410000002
vioscreen_isomalt
0.0
vioscreen_joules
7812.152055
vioscreen_juice_servings
0.08666
vioscreen_lactitol
0.0
vioscreen_lactose
0.85460272
vioscreen_legumes
0.0
vioscreen_leucine
5.642026969
vioscreen_line_gi
213.44419950000002
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
12243.44658
vioscreen_lycopene
184.98842040000002
vioscreen_lysine
5.853096237999999
vioscreen_m_egg
0.308794518
vioscreen_m_fish_hi
1.4674246169999998
vioscreen_m_fish_lo
1.125972633
vioscreen_m_frank
0.5521096010000001
vioscreen_m_meat
2.636986301
vioscreen_m_mpf
8.013370211
vioscreen_m_nutsd
0.676849323
vioscreen_m_organ
0.586547935
vioscreen_m_poult
1.644438276
vioscreen_m_soy
0.000164384
vioscreen_magnes
251.9099315
vioscreen_maltitol
0.0
vioscreen_maltose
2.221095757
vioscreen_mangan
3.0621916469999997
vioscreen_mannitol
0.117095885
vioscreen_methhis3
25.35714897
vioscreen_methion
1.852958951
vioscreen_mfa141
0.11446575
vioscreen_mfa161
2.766766608
vioscreen_mfa181
69.44277076
vioscreen_mfa201
0.7808765990000001
vioscreen_mfa221
0.250739738
vioscreen_mfatot
73.65583797
vioscreen_multi_calcium_avg
114.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
4.0
vioscreen_natoco
16.64964148
vioscreen_nccglbr
51.95
vioscreen_nccglgr
36.33772742
vioscreen_niacin
21.46509525
vioscreen_niacineq
34.79643622
vioscreen_nitrogen
11.85550621
vioscreen_non_fried_fish_servings
4.55058
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.480355877
vioscreen_oxalic
463.5982877
vioscreen_oxalicm
477.7155822
vioscreen_pantothe
5.058767658
vioscreen_pectins
4.03947988
vioscreen_pfa182
16.74630244
vioscreen_pfa183
1.721424176
vioscreen_pfa184
0.05665753
vioscreen_pfa204
0.23093148800000002
vioscreen_pfa205
0.20386302399999998
vioscreen_pfa225
0.079890411
vioscreen_pfa226
0.419287653
vioscreen_pfatot
19.68791872
vioscreen_phenylal
3.02449299
vioscreen_phosphor
885.7792808
vioscreen_phytic
186.679131
vioscreen_pinitol
0.0
vioscreen_potass
2616.469007
vioscreen_procdate
10/28/15
vioscreen_proline
3.2059175669999997
vioscreen_protanim
61.84059825
vioscreen_protein
73.34049122
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
11.500573900000001
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
751.0
vioscreen_retinol
1187.785103
vioscreen_rgrain
0.125726026
vioscreen_ribofla
1.451205319
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.85055
vioscreen_satoco
0.0
vioscreen_selenium
97.86071276
vioscreen_serine
3.069451988
vioscreen_sfa100
0.09013697
vioscreen_sfa120
0.13926027900000001
vioscreen_sfa140
1.1280273440000002
vioscreen_sfa160
21.46016829
vioscreen_sfa170
0.08224657099999999
vioscreen_sfa180
8.610655902000001
vioscreen_sfa200
0.33189043
vioscreen_sfa220
0.201835632
vioscreen_sfa40
0.038356164
vioscreen_sfa60
0.012328767
vioscreen_sfa80
0.013287671000000001
vioscreen_sfatot
32.34120826
vioscreen_sodium
2948.821918
vioscreen_sorbitol
0.249698649
vioscreen_srvid
14568.0
vioscreen_starch
14.49271324
vioscreen_started
11/15/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
13.47334252
vioscreen_sweet_servings
0.26093
vioscreen_tagatose
1.156493137
vioscreen_tfa161t
0.073972608
vioscreen_tfa181t
1.2632602640000001
vioscreen_tfa182t
0.293260297
vioscreen_tgrain
0.180493143
vioscreen_thiamin
0.715123258
vioscreen_threonin
3.0816984830000003
vioscreen_time
16.0
vioscreen_totaltfa
1.6560272630000001
vioscreen_totcla
0.153945212
vioscreen_totfolat
299.98313360000003
vioscreen_totsugar
34.36441299
vioscreen_tryptoph
0.8004109420000001
vioscreen_tyrosine
2.495506809
vioscreen_user_id
14568.0
vioscreen_v_drkgr
0.788493117
vioscreen_v_orange
1.291972623
vioscreen_v_other
0.645917877
vioscreen_v_potato
0.015342465
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.021780821000000002
vioscreen_v_total
2.7635068289999998
vioscreen_valine
3.65945259
vioscreen_veg5_day
5.3
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.5
vioscreen_visit
1.0
vioscreen_vita_iu
45000.326030000004
vioscreen_vita_rae
3239.853425
vioscreen_vita_re
5291.920889999999
vioscreen_vitb12
11.88197239
vioscreen_vitb6
1.8913973869999998
vioscreen_vitc
80.81329195
vioscreen_vitd
8.529425300000002
vioscreen_vitd2
0.001178082
vioscreen_vitd3
8.528219981
vioscreen_vitd_iu
341.177012
vioscreen_vite_iu
24.85591824
vioscreen_vitk
504.9382705
vioscreen_water
3306.711986
vioscreen_weight
Not provided
vioscreen_wgrain
0.054767123
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.027534247
vioscreen_zinc
9.471890384
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
52.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never