American Gut Project; 10317.000030991
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634227
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-10T05:20:26Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030991
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63.0
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030991
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1952.0
bmi
26.61
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
09:00
collection_timestamp
2015-07-27 09:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Mideast
elevation
128.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
006a14724b14fe12b86b62b06537627bbae38e34f334c7f19d2c82727547a134d5c107f79c544f299177b25a358ef758cd67c89ed4cc6f0444f0d01527b28c97
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
Month
latitude
39.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030991
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
32719759bf48221a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Not provided
vioscreen_a_bev
5.77260274
vioscreen_a_cal
737.4112158
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.123917755
vioscreen_addsugar
39.13619167
vioscreen_adsugtot
35.02701199
vioscreen_age
215.0
vioscreen_alanine
2.3183287740000003
vioscreen_alcohol
83.43742509
vioscreen_alcohol_servings
5.7726
vioscreen_alphacar
6249.327397
vioscreen_alphtoce
17.69268515
vioscreen_alphtoco
16.46170002
vioscreen_arginine
3.580548012
vioscreen_ash
28.35833155
vioscreen_aspartam
0.0
vioscreen_aspartic
5.602054795
vioscreen_avcarb
276.63129280000004
vioscreen_bcodeid
Not provided
vioscreen_betacar
29218.509589999998
vioscreen_betacryp
285.9425514
vioscreen_betaine
282.2160317
vioscreen_betatoco
0.565780807
vioscreen_biochana
0.031068494
vioscreen_bmi
Not provided
vioscreen_caffeine
412.81322769999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.05636
vioscreen_calcium_servings
3.04241
vioscreen_calories
2347.8227739999998
vioscreen_carbo
327.07405819999997
vioscreen_cholest
5.965150096
vioscreen_choline
373.1671233
vioscreen_clac9t11
0.0038082190000000003
vioscreen_clat10c12
0.002410959
vioscreen_copper
2.3080823919999998
vioscreen_coumest
0.26816437600000004
vioscreen_cystine
0.8651781059999999
vioscreen_d_cheese
0.003780822
vioscreen_d_milk
0.052575344
vioscreen_d_tot_soym
0.056356164
vioscreen_d_total
0.056356164
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.626547952
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.763424641
vioscreen_discfat_oil
20.92191781
vioscreen_discfat_sol
4.168191821000001
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.003452055
vioscreen_f_citmlb
0.41904108799999995
vioscreen_f_nj_citmlb
0.41904108799999995
vioscreen_f_nj_other
1.439397274
vioscreen_f_nj_total
1.8584658269999998
vioscreen_f_other
1.439397274
vioscreen_f_total
1.8584658269999998
vioscreen_fat
38.41251873
vioscreen_fiber
50.44353061
vioscreen_fibh2o
14.17153521
vioscreen_fibinso
36.33167273
vioscreen_finished
7/15/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
803.45
vioscreen_fol_nat
683.5522687999999
vioscreen_fol_syn
70.57068172
vioscreen_formontn
0.0047945209999999995
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
3.7
vioscreen_fructose
40.46592198
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
4.18293156
vioscreen_g_total
6.195287751
vioscreen_g_whl
2.012328767
vioscreen_galactos
0.36830135
vioscreen_gammtoco
10.00008294
vioscreen_gender
false
vioscreen_genistn
0.667863025
vioscreen_glac
121.36842890000001
vioscreen_gltc
134.1690068
vioscreen_glucose
41.69284568
vioscreen_glutamic
12.3914504
vioscreen_glycine
2.296246422
vioscreen_glycitn
0.101068491
vioscreen_grams
5984.222603
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
13.1
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.9
vioscreen_hei_grains
4.4
vioscreen_hei_meat_beans
6.3
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.4
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
61.9
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
7.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.9
vioscreen_height
Not provided
vioscreen_histidin
1.142356057
vioscreen_inositol
0.227095889
vioscreen_iron
19.61027397
vioscreen_isoleuc
1.899260388
vioscreen_isomalt
0.0
vioscreen_joules
9823.285616
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
0.917698607
vioscreen_legumes
0.314054808
vioscreen_leucine
3.199671581
vioscreen_line_gi
763.4289384
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
22450.228769999998
vioscreen_lycopene
16866.29178
vioscreen_lysine
2.333287738
vioscreen_m_egg
0.004739726
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.037698631
vioscreen_m_mpf
0.037698631
vioscreen_m_nutsd
2.2427945069999997
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.160136988
vioscreen_magnes
592.7359589
vioscreen_maltitol
0.0
vioscreen_maltose
3.91484977
vioscreen_mangan
7.21268461
vioscreen_mannitol
1.239041096
vioscreen_methhis3
0.33901371399999997
vioscreen_methion
0.671616478
vioscreen_mfa141
0.001178082
vioscreen_mfa161
0.160767124
vioscreen_mfa181
13.36421902
vioscreen_mfa201
0.20923288399999998
vioscreen_mfa221
0.013123288
vioscreen_mfatot
13.84912243
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.46170002
vioscreen_nccglbr
200.39781680000002
vioscreen_nccglgr
140.177836
vioscreen_niacin
27.06693333
vioscreen_niacineq
37.49112265
vioscreen_nitrogen
9.934328179
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.19599994
vioscreen_oxalic
987.3607877000001
vioscreen_oxalicm
1021.6290240000001
vioscreen_pantothe
7.1027123020000005
vioscreen_pectins
9.417616251
vioscreen_pfa182
11.45106887
vioscreen_pfa183
1.193534203
vioscreen_pfa184
0.0004931509999999999
vioscreen_pfa204
0.004684932
vioscreen_pfa205
0.001945205
vioscreen_pfa225
0.0
vioscreen_pfa226
0.0
vioscreen_pfatot
12.67328767
vioscreen_phenylal
2.317150544
vioscreen_phosphor
1249.8992289999999
vioscreen_phytic
927.4228596
vioscreen_pinitol
0.016301369
vioscreen_potass
5924.584932
vioscreen_procdate
10/28/15
vioscreen_proline
3.256904498
vioscreen_protanim
1.428027344
vioscreen_protein
60.01752997
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
58.59468108
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
288.0
vioscreen_retinol
7.64284969
vioscreen_rgrain
4.375890277
vioscreen_ribofla
2.347890357
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
10.44085
vioscreen_satoco
0.0
vioscreen_selenium
80.99563891
vioscreen_serine
2.3927670830000003
vioscreen_sfa100
0.054465756
vioscreen_sfa120
0.100712324
vioscreen_sfa140
0.251479434
vioscreen_sfa160
5.019397474
vioscreen_sfa170
0.010630137
vioscreen_sfa180
2.148657561
vioscreen_sfa200
0.171205484
vioscreen_sfa220
0.338849316
vioscreen_sfa40
0.049643833
vioscreen_sfa60
0.014082191
vioscreen_sfa80
0.026164381
vioscreen_sfatot
8.36309664
vioscreen_sodium
3823.6825340000005
vioscreen_sorbitol
1.792684978
vioscreen_srvid
20162.0
vioscreen_starch
85.38654217
vioscreen_started
7/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.98556293
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.4997533509999998
vioscreen_tfa161t
0.002438356
vioscreen_tfa181t
0.139095892
vioscreen_tfa182t
0.125178089
vioscreen_tgrain
6.0741639020000004
vioscreen_thiamin
2.070602793
vioscreen_threonin
1.896548086
vioscreen_time
24.0
vioscreen_totaltfa
0.299424639
vioscreen_totcla
0.006520548
vioscreen_totfolat
754.1230307999999
vioscreen_totsugar
122.51483300000001
vioscreen_tryptoph
0.6257807479999999
vioscreen_tyrosine
1.47186296
vioscreen_user_id
20162.0
vioscreen_v_drkgr
1.9938904640000001
vioscreen_v_orange
1.22309587
vioscreen_v_other
3.723589001
vioscreen_v_potato
0.040739726000000004
vioscreen_v_starcy
0.17071234300000002
vioscreen_v_tomato
2.407917681
vioscreen_v_total
9.560000401
vioscreen_valine
2.204273966
vioscreen_veg5_day
16.1
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
19.0
vioscreen_visit
1.0
vioscreen_vita_iu
54172.83836
vioscreen_vita_rae
2714.822945
vioscreen_vita_re
5422.006849
vioscreen_vitb12
0.36008217200000003
vioscreen_vitb6
2.998547865
vioscreen_vitc
304.67519260000006
vioscreen_vitd
0.021068492999999997
vioscreen_vitd2
0.0
vioscreen_vitd3
0.021068492999999997
vioscreen_vitd_iu
0.8427397320000001
vioscreen_vite_iu
24.51967305
vioscreen_vitk
968.7952911
vioscreen_water
5455.740068
vioscreen_weight
Not provided
vioscreen_wgrain
1.698246535
vioscreen_whole_grain_servings
2.01233
vioscreen_xylitol
0.12019177800000001
vioscreen_zinc
10.10298721
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
79.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily