American Gut Project; 10317.000029349
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633698
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029349
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
74.0
age_corrected
74.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29349
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1941.0
bmi
21.41
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/04/2015
collection month
July
collection season
Summer
collection time
11:25
collection_timestamp
2015-07-04 11:25
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
18.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Never
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
332d0ae9317654d3a10bf8fad10a81ee0793e637e4f8f52c1a394c7072e4a0166272892e6e12b6a378fd41f59ce232c70d4251f0f6637ab645a5887b5f9379a8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
54.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.2
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000029349
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
3f09a1451d0465a3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.990794561
vioscreen_a_cal
147.9080051
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.287287297000001
vioscreen_addsugar
37.23361515
vioscreen_adsugtot
32.29240689
vioscreen_age
215.0
vioscreen_alanine
4.149424765
vioscreen_alcohol
13.914849100000001
vioscreen_alcohol_servings
0.99079
vioscreen_alphacar
1392.137842
vioscreen_alphtoce
9.351480228
vioscreen_alphtoco
8.433890063
vioscreen_arginine
4.680136652
vioscreen_ash
21.53032962
vioscreen_aspartam
0.0
vioscreen_aspartic
8.467890491
vioscreen_avcarb
275.7232877
vioscreen_bcodeid
Not provided
vioscreen_betacar
7495.3458900000005
vioscreen_betacryp
377.3077483
vioscreen_betaine
280.6463399
vioscreen_betatoco
0.270383568
vioscreen_biochana
0.022767124
vioscreen_bmi
Not provided
vioscreen_caffeine
319.67311639999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.8037299999999998
vioscreen_calcium_servings
3.46814
vioscreen_calories
1983.07774
vioscreen_carbo
307.089833
vioscreen_cholest
146.9186751
vioscreen_choline
416.4122003
vioscreen_clac9t11
0.038328766
vioscreen_clat10c12
0.009863013
vioscreen_copper
1.802712469
vioscreen_coumest
0.132246577
vioscreen_cystine
1.008958958
vioscreen_d_cheese
0.057506849000000006
vioscreen_d_milk
1.639424698
vioscreen_d_tot_soym
1.803726154
vioscreen_d_total
1.803726154
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
0.07315068200000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.861807878
vioscreen_discfat_oil
13.99400016
vioscreen_discfat_sol
13.45701252
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002246575
vioscreen_f_citmlb
1.99920554
vioscreen_f_nj_citmlb
0.993452098
vioscreen_f_nj_other
2.488877053
vioscreen_f_nj_total
3.48235599
vioscreen_f_other
2.488877053
vioscreen_f_total
4.488082259
vioscreen_fat
40.48285531
vioscreen_fiber
31.34079623
vioscreen_fibh2o
8.714162832000001
vioscreen_fibinso
22.70813356
vioscreen_finished
7/4/15
vioscreen_fish_servings
4.94808
vioscreen_fol_deqv
893.9285103
vioscreen_fol_nat
481.5470034
vioscreen_fol_syn
242.55652830000002
vioscreen_formontn
0.006246575
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.28493
vioscreen_frt5_day
6.3
vioscreen_frtsumm
9.0
vioscreen_fructose
43.83693279
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
2.103506762
vioscreen_g_total
5.235835162
vioscreen_g_whl
3.132356325
vioscreen_galactos
0.507205451
vioscreen_gammtoco
7.908300112
vioscreen_gender
false
vioscreen_genistn
0.08717808699999999
vioscreen_glac
143.9808861
vioscreen_gltc
158.7002676
vioscreen_glucose
43.25972817
vioscreen_glutamic
15.54169788
vioscreen_glycine
3.549589643
vioscreen_glycitn
0.014520548000000001
vioscreen_grams
4062.1061640000003
vioscreen_hei2010_dairy
7.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
93.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
4.7
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.9
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
86.9
vioscreen_hei_sodium
4.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.323616425
vioscreen_inositol
0.49528766799999996
vioscreen_iron
18.83871067
vioscreen_isoleuc
3.684027183
vioscreen_isomalt
0.0
vioscreen_joules
8297.197259999999
vioscreen_juice_servings
2.01145
vioscreen_lactitol
0.0
vioscreen_lactose
21.94635729
vioscreen_legumes
0.002191781
vioscreen_leucine
6.417286494
vioscreen_line_gi
798.542637
vioscreen_low_fat_dairy_serving
1.7084099999999998
vioscreen_lutzeax
8400.421233
vioscreen_lycopene
3275.369863
vioscreen_lysine
6.053698229
vioscreen_m_egg
0.08906849900000001
vioscreen_m_fish_hi
1.515397247
vioscreen_m_fish_lo
1.304383495
vioscreen_m_frank
0.549068503
vioscreen_m_meat
1.4537259869999999
vioscreen_m_mpf
5.472438196000001
vioscreen_m_nutsd
0.010410959000000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.649863005
vioscreen_m_soy
0.001890411
vioscreen_magnes
471.9100171
vioscreen_maltitol
0.0
vioscreen_maltose
3.447205092
vioscreen_mangan
8.344245639
vioscreen_mannitol
0.555534258
vioscreen_methhis3
19.67216529
vioscreen_methion
1.963068714
vioscreen_mfa141
0.037616442
vioscreen_mfa161
0.72969862
vioscreen_mfa181
13.99410718
vioscreen_mfa201
0.345863029
vioscreen_mfa221
0.246958923
vioscreen_mfatot
15.45723325
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.433890063
vioscreen_nccglbr
208.8224315
vioscreen_nccglgr
146.064009
vioscreen_niacin
27.40939373
vioscreen_niacineq
43.25383669
vioscreen_nitrogen
14.39695928
vioscreen_non_fried_fish_servings
4.15404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.1884381019999997
vioscreen_oxalic
489.4992295
vioscreen_oxalicm
493.8667808
vioscreen_pantothe
6.715837034
vioscreen_pectins
6.075753157
vioscreen_pfa182
8.727177199
vioscreen_pfa183
1.416986
vioscreen_pfa184
0.057671230999999996
vioscreen_pfa204
0.09471233800000001
vioscreen_pfa205
0.20887670600000002
vioscreen_pfa225
0.081068494
vioscreen_pfa226
0.425287618
vioscreen_pfatot
11.10693025
vioscreen_phenylal
3.5996983360000003
vioscreen_phosphor
1539.9731160000001
vioscreen_phytic
784.2833048
vioscreen_pinitol
0.011616439
vioscreen_potass
5137.902055
vioscreen_procdate
10/28/15
vioscreen_proline
5.035945527
vioscreen_protanim
57.42921126
vioscreen_protein
89.34276541
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.91260435
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
324.0
vioscreen_retinol
471.2692209
vioscreen_rgrain
2.595726034
vioscreen_ribofla
2.615972817
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.23079
vioscreen_satoco
0.0
vioscreen_selenium
127.58605520000002
vioscreen_serine
3.7458084730000003
vioscreen_sfa100
0.103863013
vioscreen_sfa120
0.417424659
vioscreen_sfa140
0.617972596
vioscreen_sfa160
5.964767498
vioscreen_sfa170
0.031479454
vioscreen_sfa180
2.228904076
vioscreen_sfa200
0.07726029200000001
vioscreen_sfa220
0.051342465
vioscreen_sfa40
0.05928767
vioscreen_sfa60
0.020273972
vioscreen_sfa80
0.073013703
vioscreen_sfatot
9.802766481
vioscreen_sodium
2881.451712
vioscreen_sorbitol
1.7072875980000002
vioscreen_srvid
20062.0
vioscreen_starch
90.66860017
vioscreen_started
7/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
33.61929045
vioscreen_sweet_servings
0.24931999999999999
vioscreen_tagatose
0.9080548009999999
vioscreen_tfa161t
0.023835619
vioscreen_tfa181t
1.302191831
vioscreen_tfa182t
0.227287648
vioscreen_tgrain
5.4749311060000005
vioscreen_thiamin
2.014547939
vioscreen_threonin
3.330493164
vioscreen_time
23.0
vioscreen_totaltfa
1.695945426
vioscreen_totcla
0.049068493
vioscreen_totfolat
724.1032534
vioscreen_totsugar
148.7412992
vioscreen_tryptoph
0.9509589209999999
vioscreen_tyrosine
2.900081938
vioscreen_user_id
20062.0
vioscreen_v_drkgr
0.506137001
vioscreen_v_orange
0.23131506899999998
vioscreen_v_other
0.740547912
vioscreen_v_potato
0.839780792
vioscreen_v_starcy
0.16791781100000003
vioscreen_v_tomato
0.384657559
vioscreen_v_total
2.870328888
vioscreen_valine
4.326520695
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.7
vioscreen_visit
1.0
vioscreen_vita_iu
15540.153419999999
vioscreen_vita_rae
1169.6084759999999
vioscreen_vita_re
1867.947945
vioscreen_vitb12
7.6639173529999995
vioscreen_vitb6
3.1333151619999997
vioscreen_vitc
254.4642551
vioscreen_vitd
13.50495907
vioscreen_vitd2
0.002575342
vioscreen_vitd3
13.50238522
vioscreen_vitd_iu
540.1983626
vioscreen_vite_iu
12.5602218
vioscreen_vitk
351.1547945
vioscreen_water
3604.028425
vioscreen_weight
Not provided
vioscreen_wgrain
2.879178149
vioscreen_whole_grain_servings
3.13236
vioscreen_xylitol
0.056438352000000004
vioscreen_zinc
14.23794414
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)