American Gut Project; 10317.000028172
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3633935
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-10T05:20:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028172
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
64.0
age_corrected
64.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28172
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1951.0
bmi
24.16
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/08/2015
collection month
July
collection season
Summer
collection time
14:00
collection_timestamp
2015-07-08 14:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
Pakistan
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
34.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
154.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
be8f52d54cc94561c9fc56136a94fbea804ba9666b9fa54959db0084dd2763a67c5d9be489d222618d62e13a677610011bad75556660f036b2867e7ec64e85e0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
53.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028172
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
cb0321a0cb4bda00
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.109178099
vioscreen_addsugar
5.171178029
vioscreen_adsugtot
4.548958891
vioscreen_age
215.0
vioscreen_alanine
1.912575249
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
4217.596918
vioscreen_alphtoce
7.633288072999999
vioscreen_alphtoco
6.959643889
vioscreen_arginine
2.356438289
vioscreen_ash
11.05890411
vioscreen_aspartam
0.0
vioscreen_aspartic
4.12668457
vioscreen_avcarb
79.43345462
vioscreen_bcodeid
Not provided
vioscreen_betacar
12165.32192
vioscreen_betacryp
265.52915240000004
vioscreen_betaine
27.81218697
vioscreen_betatoco
0.156739724
vioscreen_biochana
0.01150685
vioscreen_bmi
Not provided
vioscreen_caffeine
0.0
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.32986
vioscreen_calcium_servings
1.1558899999999999
vioscreen_calories
678.4145976
vioscreen_carbo
100.5113121
vioscreen_cholest
96.76405179999999
vioscreen_choline
224.71645980000002
vioscreen_clac9t11
0.007945206
vioscreen_clat10c12
0.001808219
vioscreen_copper
0.832356325
vioscreen_coumest
0.000575342
vioscreen_cystine
0.48917809100000004
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.223068488
vioscreen_d_tot_soym
0.329862997
vioscreen_d_total
0.329862997
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
0.009287670999999999
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.125452078
vioscreen_discfat_oil
7.484465967
vioscreen_discfat_sol
4.3403009280000004
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002410959
vioscreen_f_citmlb
1.60306848
vioscreen_f_nj_citmlb
0.8499452359999999
vioscreen_f_nj_other
0.07827397700000001
vioscreen_f_nj_total
0.928219228
vioscreen_f_other
0.07827397700000001
vioscreen_f_total
1.6813424719999999
vioscreen_fat
17.14882144
vioscreen_fiber
21.07868418
vioscreen_fibh2o
3.785205078
vioscreen_fibinso
17.54175139
vioscreen_finished
7/3/15
vioscreen_fish_servings
2.54596
vioscreen_fol_deqv
316.5247432
vioscreen_fol_nat
313.991524
vioscreen_fol_syn
1.490821985
vioscreen_formontn
0.0031232879999999997
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.4
vioscreen_fructose
20.82972228
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.155315065
vioscreen_g_total
0.713945195
vioscreen_g_whl
0.55863012
vioscreen_galactos
0.225780832
vioscreen_gammtoco
5.9922744539999995
vioscreen_gender
false
vioscreen_genistn
0.033150686
vioscreen_glac
35.73221586
vioscreen_gltc
42.468760700000004
vioscreen_glucose
19.68416497
vioscreen_glutamic
7.373424122
vioscreen_glycine
1.5284111130000002
vioscreen_glycitn
0.0
vioscreen_grams
1312.907534
vioscreen_hei2010_dairy
3.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.2
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
77.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.7
vioscreen_height
Not provided
vioscreen_histidin
0.9418629270000001
vioscreen_inositol
0.409534235
vioscreen_iron
6.206521565
vioscreen_isoleuc
1.6393150019999998
vioscreen_isomalt
0.0
vioscreen_joules
2838.486473
vioscreen_juice_servings
1.50625
vioscreen_lactitol
0.0
vioscreen_lactose
4.251999946000001
vioscreen_legumes
0.096136987
vioscreen_leucine
2.689013337
vioscreen_line_gi
362.74734589999997
vioscreen_low_fat_dairy_serving
0.32041
vioscreen_lutzeax
4777.909589
vioscreen_lycopene
15561.32055
vioscreen_lysine
2.7089865489999996
vioscreen_m_egg
0.294465763
vioscreen_m_fish_hi
0.598986315
vioscreen_m_fish_lo
0.8518629940000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.994739606
vioscreen_m_nutsd
0.542602748
vioscreen_m_organ
0.0
vioscreen_m_poult
0.543917805
vioscreen_m_soy
0.000273973
vioscreen_magnes
207.02202480000003
vioscreen_maltitol
0.0
vioscreen_maltose
0.681041185
vioscreen_mangan
2.0803013630000002
vioscreen_mannitol
0.589589033
vioscreen_methhis3
6.902219339
vioscreen_methion
0.81783556
vioscreen_mfa141
0.0024657529999999998
vioscreen_mfa161
0.190000017
vioscreen_mfa181
5.079314935
vioscreen_mfa201
0.134027392
vioscreen_mfa221
0.062712332
vioscreen_mfatot
5.499424765
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
6.959643889
vioscreen_nccglbr
57.23547731
vioscreen_nccglgr
40.03260649
vioscreen_niacin
10.55832821
vioscreen_niacineq
17.23347737
vioscreen_nitrogen
6.357232582000001
vioscreen_non_fried_fish_servings
2.54596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.790684865
vioscreen_oxalic
97.43740368
vioscreen_oxalicm
112.07685149999999
vioscreen_pantothe
2.9278902239999995
vioscreen_pectins
4.8046574
vioscreen_pfa182
5.015698577
vioscreen_pfa183
0.5214794420000001
vioscreen_pfa184
0.016575343
vioscreen_pfa204
0.060931510999999994
vioscreen_pfa205
0.068356166
vioscreen_pfa225
0.027287671
vioscreen_pfa226
0.15736987
vioscreen_pfatot
5.912028441
vioscreen_phenylal
1.570657641
vioscreen_phosphor
673.4608304999999
vioscreen_phytic
297.7971318
vioscreen_pinitol
0.001123288
vioscreen_potass
2666.015411
vioscreen_procdate
10/28/15
vioscreen_proline
1.7297806409999998
vioscreen_protanim
19.64794521
vioscreen_protein
39.32339469
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.67353516
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
330.0
vioscreen_retinol
80.45273438
vioscreen_rgrain
0.134410952
vioscreen_ribofla
0.7411780790000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.01225
vioscreen_satoco
0.0
vioscreen_selenium
46.97241545
vioscreen_serine
1.697808253
vioscreen_sfa100
0.034246575
vioscreen_sfa120
0.050794518
vioscreen_sfa140
0.18246574899999998
vioscreen_sfa160
2.4466852059999997
vioscreen_sfa170
0.01358904
vioscreen_sfa180
0.845890411
vioscreen_sfa200
0.05723288
vioscreen_sfa220
0.100109592
vioscreen_sfa40
0.040657532
vioscreen_sfa60
0.023123287000000003
vioscreen_sfa80
0.016465751
vioscreen_sfatot
3.877369502
vioscreen_sodium
1456.5933220000002
vioscreen_sorbitol
0.18027398100000003
vioscreen_srvid
20055.0
vioscreen_starch
14.66619221
vioscreen_started
7/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.18123127
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.7591780990000001
vioscreen_tfa161t
0.002849315
vioscreen_tfa181t
0.17509589
vioscreen_tfa182t
0.046109594000000004
vioscreen_tgrain
0.6350411189999999
vioscreen_thiamin
0.836027381
vioscreen_threonin
1.630137154
vioscreen_time
28.0
vioscreen_totaltfa
0.244356171
vioscreen_totcla
0.009863014
vioscreen_totfolat
315.48236299999996
vioscreen_totsugar
60.04966824
vioscreen_tryptoph
0.400657549
vioscreen_tyrosine
1.182438179
vioscreen_user_id
20055.0
vioscreen_v_drkgr
0.615205446
vioscreen_v_orange
0.6852602609999999
vioscreen_v_other
0.723205483
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.504410961
vioscreen_v_tomato
2.083424524
vioscreen_v_total
4.61150705
vioscreen_valine
1.860465941
vioscreen_veg5_day
10.9
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
24279.4411
vioscreen_vita_rae
1281.0267119999999
vioscreen_vita_re
2481.602911
vioscreen_vitb12
1.620575202
vioscreen_vitb6
1.294000077
vioscreen_vitc
194.6806079
vioscreen_vitd
4.394739606
vioscreen_vitd2
0.0
vioscreen_vitd3
4.394739606
vioscreen_vitd_iu
175.7895842
vioscreen_vite_iu
10.39537069
vioscreen_vitk
188.7922517
vioscreen_water
1150.171832
vioscreen_weight
Not provided
vioscreen_wgrain
0.5006301670000001
vioscreen_whole_grain_servings
0.5586300000000001
vioscreen_xylitol
0.013780822
vioscreen_zinc
4.899424096000001
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)