American Gut Project; 10317.000021178
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632443
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:49Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021178
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21178
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1963.0
bmi
23.83
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
01/12/2015
collection month
January
collection season
Winter
collection time
08:10
collection_timestamp
2015-01-12 08:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
Algeria
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
422.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Daily
flu_vaccine_date
Month
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
13a33d4ed2cc48d7d85e28285447407ebbe2620728baef8ec0eefe8d452caabccfb59e1990f9543abf48f450373404ce121c3500beba1b765d17df243da9a6ee
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
35.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-120.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000021178
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
df6ffda94585649c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.002191781
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.23287805
vioscreen_addsugar
54.69660745
vioscreen_adsugtot
48.85559182
vioscreen_age
214.0
vioscreen_alanine
4.46819249
vioscreen_alcohol
0.011835617
vioscreen_alcohol_servings
0.0021899999999999997
vioscreen_alphacar
4965.790068
vioscreen_alphtoce
32.77756582
vioscreen_alphtoco
30.69783551
vioscreen_arginine
6.580876097000001
vioscreen_ash
33.29701413
vioscreen_aspartam
0.0
vioscreen_aspartic
10.50901448
vioscreen_avcarb
244.0860873
vioscreen_bcodeid
Not provided
vioscreen_betacar
28208.0274
vioscreen_betacryp
594.5439212
vioscreen_betaine
237.7075128
vioscreen_betatoco
0.817424701
vioscreen_biochana
0.037972602
vioscreen_bmi
Not provided
vioscreen_caffeine
215.19875860000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.8721899999999999
vioscreen_calcium_servings
4.32748
vioscreen_calories
2770.510103
vioscreen_carbo
302.61817210000004
vioscreen_cholest
84.73032962
vioscreen_choline
431.3785103
vioscreen_clac9t11
0.021616438999999998
vioscreen_clat10c12
0.010383561999999999
vioscreen_copper
2.872273652
vioscreen_coumest
0.134876722
vioscreen_cystine
1.145835647
vioscreen_d_cheese
0.056739724000000005
vioscreen_d_milk
0.06569862900000001
vioscreen_d_tot_soym
0.9341644709999999
vioscreen_d_total
0.872191798
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
19.744657
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.743479104
vioscreen_discfat_oil
102.5048373
vioscreen_discfat_sol
11.90345275
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001041096
vioscreen_f_citmlb
1.362274003
vioscreen_f_nj_citmlb
1.3540274840000002
vioscreen_f_nj_other
2.181863027
vioscreen_f_nj_total
3.535917768
vioscreen_f_other
2.1835890680000003
vioscreen_f_total
3.545890745
vioscreen_fat
144.94646830000002
vioscreen_fiber
58.52465218
vioscreen_fibh2o
15.80652157
vioscreen_fibinso
42.70948202
vioscreen_finished
10/15/14
vioscreen_fish_servings
4.22673
vioscreen_fol_deqv
704.9150685
vioscreen_fol_nat
693.2238014
vioscreen_fol_syn
6.872931828
vioscreen_formontn
0.011671232
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
7.1
vioscreen_fructose
35.71706175
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.5691780820000001
vioscreen_g_total
3.716685172
vioscreen_g_whl
3.14750709
vioscreen_galactos
1.169589024
vioscreen_gammtoco
17.01758749
vioscreen_gender
false
vioscreen_genistn
21.528628
vioscreen_glac
101.3120291
vioscreen_gltc
120.15638909999998
vioscreen_glucose
31.42103756
vioscreen_glutamic
17.77802734
vioscreen_glycine
4.217561737
vioscreen_glycitn
5.517561402999999
vioscreen_grams
4898.219178
vioscreen_hei2010_dairy
2.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.3
vioscreen_hei_score
78.0
vioscreen_hei_sodium
0.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
2.374849168
vioscreen_inositol
0.213671248
vioscreen_iron
20.07843402
vioscreen_isoleuc
3.997315122
vioscreen_isomalt
0.0
vioscreen_joules
11591.80685
vioscreen_juice_servings
0.019969999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
11.97287698
vioscreen_legumes
0.8298356570000001
vioscreen_leucine
7.023889662
vioscreen_line_gi
709.7962757
vioscreen_low_fat_dairy_serving
0.80085
vioscreen_lutzeax
24122.02466
vioscreen_lycopene
8914.776027
vioscreen_lysine
5.83399909
vioscreen_m_egg
0.155835619
vioscreen_m_fish_hi
0.720520521
vioscreen_m_fish_lo
1.68832874
vioscreen_m_frank
0.0
vioscreen_m_meat
0.037698631
vioscreen_m_mpf
2.446465814
vioscreen_m_nutsd
4.425178256000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
1.5955342330000002
vioscreen_magnes
705.9193921
vioscreen_maltitol
0.0
vioscreen_maltose
5.223971934
vioscreen_mangan
8.706165721
vioscreen_mannitol
1.155726017
vioscreen_methhis3
7.177506956
vioscreen_methion
1.7328220319999998
vioscreen_mfa141
0.003287671
vioscreen_mfa161
1.30430139
vioscreen_mfa181
77.74477205
vioscreen_mfa201
0.853041223
vioscreen_mfa221
0.057890403
vioscreen_mfatot
80.24922409999999
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
30.68840968
vioscreen_nccglbr
172.53940500000002
vioscreen_nccglgr
120.6809824
vioscreen_niacin
25.55479452
vioscreen_niacineq
44.04189587
vioscreen_nitrogen
16.44808166
vioscreen_non_fried_fish_servings
4.22673
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.7079730310000003
vioscreen_oxalic
966.6696062000001
vioscreen_oxalicm
1051.911729
vioscreen_pantothe
7.406574406
vioscreen_pectins
11.88391883
vioscreen_pfa182
27.80934289
vioscreen_pfa183
3.436356887
vioscreen_pfa184
0.013616438
vioscreen_pfa204
0.036520548
vioscreen_pfa205
0.069178087
vioscreen_pfa225
0.021506848999999998
vioscreen_pfa226
0.167863015
vioscreen_pfatot
31.64704088
vioscreen_phenylal
4.387617054
vioscreen_phosphor
1742.213699
vioscreen_phytic
1824.9027399999998
vioscreen_pinitol
0.13380822
vioscreen_potass
5936.200685
vioscreen_procdate
10/28/15
vioscreen_proline
5.398766922999999
vioscreen_protanim
28.22413581
vioscreen_protein
99.07284889
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
70.83603382
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
782.0
vioscreen_retinol
81.33287671
vioscreen_rgrain
0.718438386
vioscreen_ribofla
2.13745251
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.61041
vioscreen_satoco
0.020931506000000002
vioscreen_selenium
139.0774294
vioscreen_serine
4.8448222119999995
vioscreen_sfa100
0.12939725900000001
vioscreen_sfa120
0.2270137
vioscreen_sfa140
0.683643916
vioscreen_sfa160
16.61605308
vioscreen_sfa170
0.048356157999999996
vioscreen_sfa180
4.86895869
vioscreen_sfa200
0.66991782
vioscreen_sfa220
0.807397294
vioscreen_sfa40
0.162027396
vioscreen_sfa60
0.077808218
vioscreen_sfa80
0.07035616
vioscreen_sfatot
24.74599476
vioscreen_sodium
5518.934589
vioscreen_sorbitol
1.510356245
vioscreen_srvid
14182.0
vioscreen_starch
70.34036280000001
vioscreen_started
10/15/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.009178081999999999
vioscreen_sucrlose
0.0
vioscreen_sucrose
57.28490475
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
6.806575075
vioscreen_tfa161t
0.018054795
vioscreen_tfa181t
0.557534247
vioscreen_tfa182t
0.290246582
vioscreen_tgrain
3.250520722
vioscreen_thiamin
1.8173697690000001
vioscreen_threonin
3.577863134
vioscreen_time
63.0
vioscreen_totaltfa
0.991177995
vioscreen_totcla
0.033726026
vioscreen_totfolat
700.0967893999999
vioscreen_totsugar
144.9470462
vioscreen_tryptoph
1.1110410929999999
vioscreen_tyrosine
3.28531444
vioscreen_user_id
14182.0
vioscreen_v_drkgr
1.3757807480000002
vioscreen_v_orange
1.211287574
vioscreen_v_other
1.92953416
vioscreen_v_potato
0.17484931399999998
vioscreen_v_starcy
0.08863013300000001
vioscreen_v_tomato
0.894794537
vioscreen_v_total
5.674876257
vioscreen_valine
4.756903829
vioscreen_veg5_day
10.4
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
11.3
vioscreen_visit
1.0
vioscreen_vita_iu
51916.38356
vioscreen_vita_rae
2663.684589
vioscreen_vita_re
5246.032877000001
vioscreen_vitb12
2.812821731
vioscreen_vitb6
2.9271504439999996
vioscreen_vitc
314.8878425
vioscreen_vitd
5.074274267
vioscreen_vitd2
0.160547951
vioscreen_vitd3
4.9137538130000005
vioscreen_vitd_iu
202.97097069999998
vioscreen_vite_iu
45.79178082
vioscreen_vitk
1028.226627
vioscreen_water
4326.82226
vioscreen_weight
Not provided
vioscreen_wgrain
2.532082085
vioscreen_whole_grain_servings
3.14751
vioscreen_xylitol
0.065780823
vioscreen_zinc
13.77556052
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
64.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily