American Gut Project; 10317.000022977
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632595
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022977
acid_reflux
Not provided
acne medication
false
acne_medication_otc
Not provided
add_adhd
I do not have this condition
age cat
60s
age years
60.0
age_corrected
60.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22977
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1955.0
bmi
33.28
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-17
collection month
January
collection season
Winter
collection time
08:50
collection_timestamp
2015-01-17 08:50
consume_animal_products_abx
Yes
contraceptive
Yes, I use a contraceptive patch (Ortho-Evra)
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
New England
elevation
163.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with celiac disease
has_physical_specimen
true
height cm
165.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
860ae6b19a9a10cdbadda02ed5eb1b94128e0e5b28b071c66a94c81afadd35d82a04dea2163c24e4452aab06977a2a8f3b2d373e08cc67c911ce98cc512d0003
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
Diagnosed by a medical professional (doctor, physician assistant)
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
41.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-73.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000022977
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CT
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Regularly (3-5 times/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
b8e0c37cdb4655aa
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not provided
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.288904143
vioscreen_a_cal
130.25753419999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.381753665
vioscreen_addsugar
15.73389073
vioscreen_adsugtot
14.72523277
vioscreen_age
215.0
vioscreen_alanine
3.1301915
vioscreen_alcohol
18.26706844
vioscreen_alcohol_servings
1.2889
vioscreen_alphacar
1518.9875
vioscreen_alphtoce
10.63380846
vioscreen_alphtoco
9.626383241000001
vioscreen_arginine
3.655834961
vioscreen_ash
16.962712699999997
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
6.2630404539999995
vioscreen_avcarb
129.8102312
vioscreen_bcodeid
Not provided
vioscreen_betacar
5179.943836
vioscreen_betacryp
15.44690443
vioscreen_betaine
62.028103599999994
vioscreen_betatoco
0.254575379
vioscreen_biochana
0.008958905
vioscreen_bmi
Not provided
vioscreen_caffeine
255.5096318
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
1.68597
vioscreen_calcium_servings
2.66507
vioscreen_calories
1582.6511990000001
vioscreen_carbo
150.16025259999998
vioscreen_cholest
239.1475813
vioscreen_choline
345.2559289
vioscreen_clac9t11
0.076000005
vioscreen_clat10c12
0.016054792
vioscreen_copper
1.140931346
vioscreen_coumest
0.184931507
vioscreen_cystine
0.8654519279999999
vioscreen_d_cheese
0.142657533
vioscreen_d_milk
1.169479412
vioscreen_d_tot_soym
1.685972616
vioscreen_d_total
1.685972616
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.20336985100000002
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.27383565
vioscreen_discfat_oil
34.13172624
vioscreen_discfat_sol
19.93109482
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000767123
vioscreen_f_citmlb
0.340931514
vioscreen_f_nj_citmlb
0.33657533799999995
vioscreen_f_nj_other
0.483835633
vioscreen_f_nj_total
0.820410992
vioscreen_f_other
0.483835633
vioscreen_f_total
0.824739723
vioscreen_fat
69.84986622
vioscreen_fiber
20.35060199
vioscreen_fibh2o
7.774082967999999
vioscreen_fibinso
12.63808059
vioscreen_finished
1/17/15
vioscreen_fish_servings
2.07712
vioscreen_fol_deqv
293.3574486
vioscreen_fol_nat
200.3657106
vioscreen_fol_syn
54.69005779
vioscreen_formontn
0.0015616439999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.6
vioscreen_fructose
9.099151192999999
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.582493111
vioscreen_g_total
3.4240822989999997
vioscreen_g_whl
1.841616612
vioscreen_galactos
0.515616388
vioscreen_gammtoco
8.936930784
vioscreen_gender
false
vioscreen_genistn
0.08997260300000001
vioscreen_glac
59.94263164
vioscreen_gltc
67.41759953
vioscreen_glucose
8.725478248
vioscreen_glutamic
12.17087703
vioscreen_glycine
2.695233071
vioscreen_glycitn
0.004109589
vioscreen_grams
3595.338356
vioscreen_hei2010_dairy
8.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.3
vioscreen_hei2010_greens_beans
1.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
88.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.8
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
3.3
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.0
vioscreen_hei_score
84.2
vioscreen_hei_sodium
6.1
vioscreen_hei_sol_fat_alc_add_sug
17.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.9
vioscreen_height
Not provided
vioscreen_histidin
1.766958911
vioscreen_inositol
0.09616439999999998
vioscreen_iron
8.538602312
vioscreen_isoleuc
2.930274106
vioscreen_isomalt
0.0
vioscreen_joules
6621.8089039999995
vioscreen_juice_servings
0.008709999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
20.19704088
vioscreen_legumes
0.000630137
vioscreen_leucine
5.167260408
vioscreen_line_gi
303.7027397
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
3097.1345890000002
vioscreen_lycopene
2313.6039379999997
vioscreen_lysine
4.626574874
vioscreen_m_egg
0.607315105
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.239287661
vioscreen_m_meat
1.017808219
vioscreen_m_mpf
3.23383555
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
0.0
vioscreen_m_poult
0.793123345
vioscreen_m_soy
0.000328767
vioscreen_magnes
295.8264127
vioscreen_maltitol
0.0
vioscreen_maltose
0.9730137659999999
vioscreen_mangan
3.351616345
vioscreen_mannitol
0.269616448
vioscreen_methhis3
12.65471292
vioscreen_methion
1.5288492280000001
vioscreen_mfa141
0.045671233
vioscreen_mfa161
0.808684968
vioscreen_mfa181
29.95734696
vioscreen_mfa201
0.424328739
vioscreen_mfa221
0.122465756
vioscreen_mfatot
31.46600492
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.626383241000001
vioscreen_nccglbr
96.43821704
vioscreen_nccglgr
67.45045484
vioscreen_niacin
15.80446677
vioscreen_niacineq
27.38851937
vioscreen_nitrogen
10.63939828
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.258383388
vioscreen_oxalic
159.85363869999998
vioscreen_oxalicm
168.84975390000002
vioscreen_pantothe
6.263233091
vioscreen_pectins
2.9582740260000002
vioscreen_pfa182
12.72772367
vioscreen_pfa183
1.874575095
vioscreen_pfa184
0.028575343
vioscreen_pfa204
0.11742463800000001
vioscreen_pfa205
0.09863013699999999
vioscreen_pfa225
0.042931504
vioscreen_pfa226
0.214328735
vioscreen_pfatot
15.17128639
vioscreen_phenylal
2.934191727
vioscreen_phosphor
1197.94726
vioscreen_phytic
638.4461472999999
vioscreen_pinitol
0.000219178
vioscreen_potass
2742.580651
vioscreen_procdate
10/28/15
vioscreen_proline
3.933287738
vioscreen_protanim
44.16435413
vioscreen_protein
65.46235552
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.29208182
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
614.0
vioscreen_retinol
252.1586045
vioscreen_rgrain
1.4236436819999998
vioscreen_ribofla
1.9686302709999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.74027
vioscreen_satoco
0.0
vioscreen_selenium
99.00291096
vioscreen_serine
3.19142431
vioscreen_sfa100
0.286465747
vioscreen_sfa120
0.334410973
vioscreen_sfa140
1.4068218909999999
vioscreen_sfa160
10.2696162
vioscreen_sfa170
0.052794522
vioscreen_sfa180
3.78104131
vioscreen_sfa200
0.218547957
vioscreen_sfa220
0.234821936
vioscreen_sfa40
0.303561652
vioscreen_sfa60
0.25030137199999997
vioscreen_sfa80
0.237123296
vioscreen_sfatot
17.57841128
vioscreen_sodium
2077.654966
vioscreen_sorbitol
0.364410986
vioscreen_srvid
16910.0
vioscreen_starch
65.27792701
vioscreen_started
1/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
17.68690336
vioscreen_sweet_servings
0.06575
vioscreen_tagatose
2.752876679
vioscreen_tfa161t
0.024821918999999998
vioscreen_tfa181t
0.786219098
vioscreen_tfa182t
0.231643844
vioscreen_tgrain
3.415315309
vioscreen_thiamin
1.185643862
vioscreen_threonin
2.551452302
vioscreen_time
21.0
vioscreen_totaltfa
1.134767214
vioscreen_totcla
0.09356164800000001
vioscreen_totfolat
255.05580049999998
vioscreen_totsugar
57.92659996
vioscreen_tryptoph
0.695945134
vioscreen_tyrosine
2.333534554
vioscreen_user_id
16910.0
vioscreen_v_drkgr
0.075506853
vioscreen_v_orange
0.323479472
vioscreen_v_other
0.773013598
vioscreen_v_potato
0.5500274239999999
vioscreen_v_starcy
0.208301387
vioscreen_v_tomato
0.238657557
vioscreen_v_total
2.168986281
vioscreen_valine
3.499644157
vioscreen_veg5_day
3.4
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.3
vioscreen_visit
1.0
vioscreen_vita_iu
10752.61096
vioscreen_vita_rae
747.7561644
vioscreen_vita_re
1243.35274
vioscreen_vitb12
4.2132056669999995
vioscreen_vitb6
1.551890585
vioscreen_vitc
64.35043878
vioscreen_vitd
8.300850144
vioscreen_vitd2
0.000328767
vioscreen_vitd3
8.300521056000001
vioscreen_vitd_iu
332.03400580000005
vioscreen_vite_iu
14.32624813
vioscreen_vitk
105.91328130000001
vioscreen_water
3286.442466
vioscreen_weight
Not provided
vioscreen_wgrain
1.991671293
vioscreen_whole_grain_servings
1.84162
vioscreen_xylitol
0.023342467000000002
vioscreen_zinc
8.901261505
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
90.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Rarely (less than once/week)