American Gut Project; 10317.000029620
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634074
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029620
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29620
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
27.34
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/11/2015
collection month
August
collection season
Summer
collection time
08:40
collection_timestamp
2015-08-11 08:40
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
96.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
3c0f43adb9826ddb1bb10238e4bef2133703a5f5a8e56d671479e08ae8e4f4450d4737516f334cf75cc2f2d984461551f29ee62cf43d18ad7057190be233f7f1
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.7
level_of_education
High School or GED equilivant
liver_disease
I do not have this condition
livingwith
Yes
longitude
0.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029620
sample type
Stool
seafood_frequency
Not provided
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
b9afa90404e6cbdd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
2.391452068
vioscreen_a_cal
290.77791099999996
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.94216476
vioscreen_addsugar
62.17128639
vioscreen_adsugtot
58.60317316
vioscreen_age
215.0
vioscreen_alanine
6.955395842000001
vioscreen_alcohol
36.32169842
vioscreen_alcohol_servings
2.39145
vioscreen_alphacar
770.6456336
vioscreen_alphtoce
10.69947894
vioscreen_alphtoco
9.027095596
vioscreen_arginine
7.136877274
vioscreen_ash
29.80052173
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
12.72194323
vioscreen_avcarb
317.2868151
vioscreen_bcodeid
Not provided
vioscreen_betacar
10244.40342
vioscreen_betacryp
64.09881742
vioscreen_betaine
229.4396404
vioscreen_betatoco
0.429589049
vioscreen_biochana
0.012
vioscreen_bmi
Not provided
vioscreen_caffeine
285.2830479
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.54362
vioscreen_calcium_servings
4.7829
vioscreen_calories
2698.65274
vioscreen_carbo
349.39835189999997
vioscreen_cholest
383.61660960000006
vioscreen_choline
607.3848459
vioscreen_clac9t11
0.081726022
vioscreen_clat10c12
0.017863014
vioscreen_copper
2.060904223
vioscreen_coumest
0.022876712999999996
vioscreen_cystine
1.6232328230000002
vioscreen_d_cheese
0.215753425
vioscreen_d_milk
0.328657553
vioscreen_d_tot_soym
2.543616559
vioscreen_d_total
2.543616559
vioscreen_d_yogurt
1.99920554
vioscreen_daidzein
0.213863007
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.9253973139999996
vioscreen_discfat_oil
22.01093081
vioscreen_discfat_sol
20.53019317
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.009041096
vioscreen_f_citmlb
1.216191791
vioscreen_f_nj_citmlb
1.2078904240000001
vioscreen_f_nj_other
2.6796438559999998
vioscreen_f_nj_total
3.8875344469999997
vioscreen_f_other
2.6796438559999998
vioscreen_f_total
3.895835897
vioscreen_fat
63.50537243
vioscreen_fiber
32.03282053
vioscreen_fibh2o
8.024713051
vioscreen_fibinso
23.907943600000003
vioscreen_finished
8/4/15
vioscreen_fish_servings
3.9244199999999996
vioscreen_fol_deqv
765.4353596
vioscreen_fol_nat
435.1610445
vioscreen_fol_syn
194.2461259
vioscreen_formontn
0.0016712329999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
7.8
vioscreen_fructose
33.9524695
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
2.026410999
vioscreen_g_total
4.161972255
vioscreen_g_whl
2.135534166
vioscreen_galactos
2.6346027530000002
vioscreen_gammtoco
13.71334413
vioscreen_gender
false
vioscreen_genistn
0.348767153
vioscreen_glac
138.20998500000002
vioscreen_gltc
152.6360124
vioscreen_glucose
28.533730199999997
vioscreen_glutamic
25.24586366
vioscreen_glycine
5.837671902
vioscreen_glycitn
0.059835617
vioscreen_grams
6543.560959
vioscreen_hei2010_dairy
7.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
82.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.3
vioscreen_hei_drk_g_org_veg_leg
4.3
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.8
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
76.6
vioscreen_hei_sodium
2.2
vioscreen_hei_sol_fat_alc_add_sug
15.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
3.807178403
vioscreen_inositol
0.245835605
vioscreen_iron
19.39208182
vioscreen_isoleuc
6.384656597999999
vioscreen_isomalt
0.0
vioscreen_joules
11291.16164
vioscreen_juice_servings
0.01658
vioscreen_lactitol
0.0
vioscreen_lactose
34.03383455
vioscreen_legumes
0.11619178
vioscreen_leucine
10.83662845
vioscreen_line_gi
643.3616866
vioscreen_low_fat_dairy_serving
2.0314799999999997
vioscreen_lutzeax
4613.9
vioscreen_lycopene
10266.25068
vioscreen_lysine
10.25786334
vioscreen_m_egg
0.6326575289999999
vioscreen_m_fish_hi
1.832767183
vioscreen_m_fish_lo
0.40367122299999997
vioscreen_m_frank
1.9269862340000001
vioscreen_m_meat
2.260821784
vioscreen_m_mpf
9.505287484
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
3.081040975
vioscreen_m_soy
0.008547944
vioscreen_magnes
549.7778252999999
vioscreen_maltitol
0.0
vioscreen_maltose
2.3764655130000003
vioscreen_mangan
8.195069027999999
vioscreen_mannitol
1.053917705
vioscreen_methhis3
34.49829837
vioscreen_methion
3.3434797730000003
vioscreen_mfa141
0.102684941
vioscreen_mfa161
1.38210976
vioscreen_mfa181
17.91405447
vioscreen_mfa201
0.41791783200000004
vioscreen_mfa221
0.385123266
vioscreen_mfatot
20.48803109
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.945506475
vioscreen_nccglbr
218.95785530000003
vioscreen_nccglgr
153.1531678
vioscreen_niacin
33.42909086
vioscreen_niacineq
55.86210938
vioscreen_nitrogen
21.55356111
vioscreen_non_fried_fish_servings
3.9244199999999996
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.009424831
vioscreen_oxalic
318.18904110000005
vioscreen_oxalicm
303.7651113
vioscreen_pantothe
8.982577055
vioscreen_pectins
6.118712542999999
vioscreen_pfa182
14.32309771
vioscreen_pfa183
1.97120562
vioscreen_pfa184
0.079890411
vioscreen_pfa204
0.268712334
vioscreen_pfa205
0.271890405
vioscreen_pfa225
0.128301375
vioscreen_pfa226
0.559643806
vioscreen_pfatot
17.73164063
vioscreen_phenylal
6.028383187
vioscreen_phosphor
2099.205137
vioscreen_phytic
941.7650685000001
vioscreen_pinitol
0.004767123
vioscreen_potass
6081.619863
vioscreen_procdate
10/28/15
vioscreen_proline
8.699589309
vioscreen_protanim
103.2914812
vioscreen_protein
134.3274722
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.00249893
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
235.0
vioscreen_retinol
324.41601030000004
vioscreen_rgrain
2.340493064
vioscreen_ribofla
3.0286848510000004
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.97918
vioscreen_satoco
0.181315069
vioscreen_selenium
185.0834118
vioscreen_serine
6.259918129
vioscreen_sfa100
0.215205488
vioscreen_sfa120
0.26158905
vioscreen_sfa140
1.372273986
vioscreen_sfa160
11.06043785
vioscreen_sfa170
0.112520547
vioscreen_sfa180
4.317232649
vioscreen_sfa200
0.08136986
vioscreen_sfa220
0.071260275
vioscreen_sfa40
0.28430136100000003
vioscreen_sfa60
0.132684943
vioscreen_sfa80
0.08493150699999999
vioscreen_sfatot
18.39728703
vioscreen_sodium
4732.383218999999
vioscreen_sorbitol
1.270904123
vioscreen_srvid
20312.0
vioscreen_starch
112.9592252
vioscreen_started
8/4/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
70.18150685
vioscreen_sweet_servings
0.16438
vioscreen_tagatose
14.28994408
vioscreen_tfa161t
0.04493151099999999
vioscreen_tfa181t
1.06800002
vioscreen_tfa182t
0.212410997
vioscreen_tgrain
4.633890398
vioscreen_thiamin
1.948410745
vioscreen_threonin
5.417725947
vioscreen_time
25.0
vioscreen_totaltfa
1.3557534409999998
vioscreen_totcla
0.100493162
vioscreen_totfolat
629.4058219
vioscreen_totsugar
173.6652504
vioscreen_tryptoph
1.346712379
vioscreen_tyrosine
4.778218977
vioscreen_user_id
20312.0
vioscreen_v_drkgr
0.587999987
vioscreen_v_orange
0.22156163
vioscreen_v_other
1.6601647780000002
vioscreen_v_potato
0.9790136890000001
vioscreen_v_starcy
0.020849315
vioscreen_v_tomato
1.031945132
vioscreen_v_total
4.501507318
vioscreen_valine
7.538273892
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
9.0
vioscreen_visit
1.0
vioscreen_vita_iu
18848.38493
vioscreen_vita_rae
1212.897774
vioscreen_vita_re
2101.379795
vioscreen_vitb12
8.762356191
vioscreen_vitb6
3.908411146
vioscreen_vitc
186.3645762
vioscreen_vitd
10.56024655
vioscreen_vitd2
0.000438356
vioscreen_vitd3
10.55980776
vioscreen_vitd_iu
422.4098619
vioscreen_vite_iu
13.51874064
vioscreen_vitk
204.9139341
vioscreen_water
5937.75411
vioscreen_weight
Not provided
vioscreen_wgrain
2.29336991
vioscreen_whole_grain_servings
2.1355299999999997
vioscreen_xylitol
0.054575343
vioscreen_zinc
19.69654859
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)