American Gut Project; 10317.000021963
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632964
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:09Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021963
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21963
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
Not provided
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1979.0
bmi
24.57
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
03/09/2015
collection month
March
collection season
Spring
collection time
07:00
collection_timestamp
2015-03-09 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
140.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
186.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
c875f4d765a16ae6e04ba6d0352d7d45613cca0f716cb555c9f8815abe91ce12a32809e14cbcbc5adca39d546a14c30102df944a0c80b7ac2b25128529c8309c
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-33.7
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
151.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000021963
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Not provided
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NSW
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
276e2b4fe6b4deb6
teethbrushing_frequency
Not provided
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.074986288
vioscreen_a_cal
154.40616440000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.6940550089999995
vioscreen_addsugar
38.39514929
vioscreen_adsugtot
24.81575343
vioscreen_age
215.0
vioscreen_alanine
2.730849676
vioscreen_alcohol
15.39098619
vioscreen_alcohol_servings
1.07499
vioscreen_alphacar
3158.615753
vioscreen_alphtoce
13.82304286
vioscreen_alphtoco
12.39208316
vioscreen_arginine
3.0025203339999997
vioscreen_ash
19.97334252
vioscreen_aspartam
0.0
vioscreen_aspartic
5.254466101
vioscreen_avcarb
162.1843429
vioscreen_bcodeid
Not provided
vioscreen_betacar
13650.298630000001
vioscreen_betacryp
235.7565497
vioscreen_betaine
169.87636990000001
vioscreen_betatoco
0.301616428
vioscreen_biochana
0.008109589
vioscreen_bmi
Not provided
vioscreen_caffeine
119.0359482
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.74337
vioscreen_calcium_servings
2.5457799999999997
vioscreen_calories
1793.6895550000002
vioscreen_carbo
185.451113
vioscreen_cholest
217.508369
vioscreen_choline
314.6883562
vioscreen_clac9t11
0.07802738599999999
vioscreen_clat10c12
0.015972603999999998
vioscreen_copper
1.340602676
vioscreen_coumest
0.040136988
vioscreen_cystine
0.7553422479999999
vioscreen_d_cheese
0.48079449399999996
vioscreen_d_milk
0.155726038
vioscreen_d_tot_soym
0.7433698259999999
vioscreen_d_total
0.7433698259999999
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
2.097013959
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.436629789
vioscreen_discfat_oil
39.42619328
vioscreen_discfat_sol
34.34852044
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
0.165452064
vioscreen_f_nj_citmlb
0.15901369099999998
vioscreen_f_nj_other
0.6985753729999999
vioscreen_f_nj_total
0.857589011
vioscreen_f_other
0.702054795
vioscreen_f_total
0.867506806
vioscreen_fat
85.52919521
vioscreen_fiber
23.26484643
vioscreen_fibh2o
6.034300753999999
vioscreen_fibinso
17.29818868
vioscreen_finished
1/10/15
vioscreen_fish_servings
1.5805799999999999
vioscreen_fol_deqv
732.7509418
vioscreen_fol_nat
325.359589
vioscreen_fol_syn
239.61035959999998
vioscreen_formontn
0.001616438
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.7
vioscreen_fructose
13.21909514
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.972520635
vioscreen_g_total
3.8792059080000003
vioscreen_g_whl
1.9066028330000002
vioscreen_galactos
0.339534247
vioscreen_gammtoco
12.76219098
vioscreen_gender
false
vioscreen_genistn
2.336356552
vioscreen_glac
77.43317637
vioscreen_gltc
85.52176798
vioscreen_glucose
16.74312259
vioscreen_glutamic
10.71194483
vioscreen_glycine
2.312164223
vioscreen_glycitn
0.581342514
vioscreen_grams
5365.258218999999
vioscreen_hei2010_dairy
3.2
vioscreen_hei2010_empty_calories
16.5
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
76.1
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
2.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.0
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
8.2
vioscreen_hei_milk
3.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
6.2
vioscreen_hei_score
66.0
vioscreen_hei_sodium
2.0
vioscreen_hei_sol_fat_alc_add_sug
11.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.5
vioscreen_height
Not provided
vioscreen_histidin
1.461780956
vioscreen_inositol
0.06904110299999999
vioscreen_iron
17.02728623
vioscreen_isoleuc
2.459123167
vioscreen_isomalt
0.0
vioscreen_joules
7504.794520999999
vioscreen_juice_servings
0.01986
vioscreen_lactitol
0.0
vioscreen_lactose
4.330246348
vioscreen_legumes
0.056767127
vioscreen_leucine
4.149945486
vioscreen_line_gi
412.1277825
vioscreen_low_fat_dairy_serving
0.10679000000000001
vioscreen_lutzeax
7586.559589
vioscreen_lycopene
7253.856164
vioscreen_lysine
3.6033152960000003
vioscreen_m_egg
0.602904145
vioscreen_m_fish_hi
0.47383560799999996
vioscreen_m_fish_lo
0.426931512
vioscreen_m_frank
0.331972598
vioscreen_m_meat
0.802849255
vioscreen_m_mpf
2.63199998
vioscreen_m_nutsd
0.020630138
vioscreen_m_organ
0.0
vioscreen_m_poult
0.596493154
vioscreen_m_soy
0.20621916899999998
vioscreen_magnes
328.2980308
vioscreen_maltitol
0.0
vioscreen_maltose
4.3699997989999995
vioscreen_mangan
4.847726482
vioscreen_mannitol
0.400657507
vioscreen_methhis3
9.08616425
vioscreen_methion
1.203780835
vioscreen_mfa141
0.052136987999999995
vioscreen_mfa161
1.069452072
vioscreen_mfa181
34.92043825
vioscreen_mfa201
0.311671218
vioscreen_mfa221
0.072821912
vioscreen_mfatot
36.57400471
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
12.39208316
vioscreen_nccglbr
137.368461
vioscreen_nccglgr
96.09350385
vioscreen_niacin
20.34668236
vioscreen_niacineq
31.17152718
vioscreen_nitrogen
9.308162992
vioscreen_non_fried_fish_servings
1.5805799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.441205754
vioscreen_oxalic
371.0305651
vioscreen_oxalicm
355.1502997
vioscreen_pantothe
4.444327911
vioscreen_pectins
4.18194463
vioscreen_pfa182
17.72164491
vioscreen_pfa183
2.1926027059999997
vioscreen_pfa184
0.016410958
vioscreen_pfa204
0.097041091
vioscreen_pfa205
0.064328766
vioscreen_pfa225
0.028246576000000002
vioscreen_pfa226
0.14019179699999998
vioscreen_pfatot
20.31312473
vioscreen_phenylal
2.429479646
vioscreen_phosphor
976.063613
vioscreen_phytic
562.783262
vioscreen_pinitol
0.019726027
vioscreen_potass
2970.893493
vioscreen_procdate
10/28/15
vioscreen_proline
3.356411534
vioscreen_protanim
32.21304313
vioscreen_protein
57.66416417
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.45115047
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
637.0
vioscreen_retinol
353.9476027
vioscreen_rgrain
2.1296436880000003
vioscreen_ribofla
1.728055102
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.71375
vioscreen_satoco
0.0
vioscreen_selenium
86.34209118
vioscreen_serine
2.528219312
vioscreen_sfa100
0.39846576
vioscreen_sfa120
0.50421916
vioscreen_sfa140
1.659123334
vioscreen_sfa160
12.868547999999999
vioscreen_sfa170
0.099287665
vioscreen_sfa180
5.243150685
vioscreen_sfa200
0.183561623
vioscreen_sfa220
0.10463014400000001
vioscreen_sfa40
0.48690411299999997
vioscreen_sfa60
0.266657539
vioscreen_sfa80
0.190630142
vioscreen_sfatot
22.21780554
vioscreen_sodium
3179.749315
vioscreen_sorbitol
0.380986295
vioscreen_srvid
16830.0
vioscreen_starch
64.8690122
vioscreen_started
1/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.54424765
vioscreen_sweet_servings
0.32502
vioscreen_tagatose
1.31443841
vioscreen_tfa161t
0.026904109
vioscreen_tfa181t
2.751040775
vioscreen_tfa182t
0.735808239
vioscreen_tgrain
4.342986141
vioscreen_thiamin
1.379616432
vioscreen_threonin
2.255972415
vioscreen_time
30.0
vioscreen_totaltfa
3.570465673
vioscreen_totcla
0.09452054800000001
vioscreen_totfolat
564.9697346
vioscreen_totsugar
59.98646725
vioscreen_tryptoph
0.649726094
vioscreen_tyrosine
1.8466852059999999
vioscreen_user_id
16830.0
vioscreen_v_drkgr
0.6941917940000001
vioscreen_v_orange
0.671506866
vioscreen_v_other
1.160219125
vioscreen_v_potato
0.25356165199999997
vioscreen_v_starcy
0.133671235
vioscreen_v_tomato
0.575041052
vioscreen_v_total
3.488109014
vioscreen_valine
2.8132330910000003
vioscreen_veg5_day
7.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.0
vioscreen_visit
1.0
vioscreen_vita_iu
26758.34795
vioscreen_vita_rae
1632.9058220000002
vioscreen_vita_re
2911.863356
vioscreen_vitb12
4.025589616
vioscreen_vitb6
2.229643688
vioscreen_vitc
150.810092
vioscreen_vitd
5.09942443
vioscreen_vitd2
0.0023287670000000003
vioscreen_vitd3
5.097150578
vioscreen_vitd_iu
203.9769772
vioscreen_vite_iu
18.49303564
vioscreen_vitk
328.7443279
vioscreen_water
5020.548629999999
vioscreen_weight
Not provided
vioscreen_wgrain
2.213370044
vioscreen_whole_grain_servings
1.9066
vioscreen_xylitol
0.024739731
vioscreen_zinc
10.71263177
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
85.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily