10317.000012311; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632345
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:40:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000012311
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
46.0
age_corrected
46.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000012311
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1968.0
bmi
20.48
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-01-17
collection month
January
collection season
Winter
collection time
08:05
collection_timestamp
2015-01-17 08:05
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
294.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Not provided
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
e0d37efb129df646027701d05e239e563803631180b8bd7b98756d74fbf30ba0905374d4360fe112b831f890074aa506590abac28505c91e9f76394e76f7fbc8
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-84.3
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000012311
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
GA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
696b3feb7f15896f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.135479485
vioscreen_a_cal
139.6010381
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.298191687
vioscreen_addsugar
25.40309557
vioscreen_adsugtot
21.0980549
vioscreen_age
215.0
vioscreen_alanine
3.979972777
vioscreen_alcohol
17.45197185
vioscreen_alcohol_servings
1.1354799999999998
vioscreen_alphacar
597.9635702
vioscreen_alphtoce
5.0493154030000005
vioscreen_alphtoco
4.533013832
vioscreen_arginine
4.6434245910000005
vioscreen_ash
9.424220757
vioscreen_aspartam
0.0
vioscreen_aspartic
6.726767177
vioscreen_avcarb
88.06671126
vioscreen_bcodeid
Not provided
vioscreen_betacar
2799.5059929999998
vioscreen_betacryp
11.78230014
vioscreen_betaine
45.25057791
vioscreen_betatoco
0.092136989
vioscreen_biochana
0.010082190999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
5.646164651
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.21014000000000002
vioscreen_calcium_servings
1.00184
vioscreen_calories
1161.3173800000002
vioscreen_carbo
96.63012628
vioscreen_cholest
196.9458476
vioscreen_choline
232.0194563
vioscreen_clac9t11
0.03931507
vioscreen_clat10c12
0.012164383999999999
vioscreen_copper
0.844383595
vioscreen_coumest
0.095945196
vioscreen_cystine
0.9518082290000001
vioscreen_d_cheese
0.026958905
vioscreen_d_milk
0.183178084
vioscreen_d_tot_soym
0.210136999
vioscreen_d_total
0.210136999
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.878520558
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.605671253
vioscreen_discfat_oil
15.85849342
vioscreen_discfat_sol
11.15734295
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.000465753
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.166246587
vioscreen_f_nj_total
0.166246587
vioscreen_f_other
0.166246587
vioscreen_f_total
0.166712335
vioscreen_fat
41.48380512
vioscreen_fiber
8.171945232
vioscreen_fibh2o
2.1209041230000003
vioscreen_fibinso
6.023835482999999
vioscreen_finished
1/15/15
vioscreen_fish_servings
0.50846
vioscreen_fol_deqv
142.3873395
vioscreen_fol_nat
78.66911922
vioscreen_fol_syn
37.48219446
vioscreen_formontn
0.00060274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
0.2
vioscreen_frtsumm
0.3
vioscreen_fructose
7.88671273
vioscreen_fruit_servings
0.2137
vioscreen_g_nwhl
1.593589135
vioscreen_g_total
1.738054835
vioscreen_g_whl
0.144465752
vioscreen_galactos
0.072904106
vioscreen_gammtoco
3.7687399669999997
vioscreen_gender
false
vioscreen_genistn
1.563287604
vioscreen_glac
52.70265411
vioscreen_gltc
56.78734482
vioscreen_glucose
9.005863388
vioscreen_glutamic
11.88378104
vioscreen_glycine
3.746986034
vioscreen_glycitn
0.244328768
vioscreen_grams
2082.309589
vioscreen_hei2010_dairy
1.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
8.6
vioscreen_hei2010_fruit
0.9
vioscreen_hei2010_greens_beans
3.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.3
vioscreen_hei2010_sea_foods_plant_protiens
3.8
vioscreen_hei2010_sodium
6.4
vioscreen_hei2010_veg
3.4
vioscreen_hei2010_whole_fruit
1.8
vioscreen_hei2010_whole_grains
0.8
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
0.9
vioscreen_hei_grains
2.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.4
vioscreen_hei_non_juice_frt
1.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.8
vioscreen_hei_score
62.9
vioscreen_hei_sodium
5.1
vioscreen_hei_sol_fat_alc_add_sug
15.4
vioscreen_hei_veg
3.4
vioscreen_hei_whl_grains
0.4
vioscreen_height
Not provided
vioscreen_histidin
2.134821811
vioscreen_inositol
0.083561644
vioscreen_iron
9.103452082
vioscreen_isoleuc
3.47054828
vioscreen_isomalt
0.0
vioscreen_joules
4858.952397
vioscreen_juice_servings
0.00093
vioscreen_lactitol
0.0
vioscreen_lactose
0.9997260109999999
vioscreen_legumes
0.024465754
vioscreen_leucine
5.475972549
vioscreen_line_gi
163.8442209
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1324.767551
vioscreen_lycopene
1661.5369859999998
vioscreen_lysine
5.639260488
vioscreen_m_egg
0.051013696
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.289808216
vioscreen_m_frank
0.0
vioscreen_m_meat
2.034685025
vioscreen_m_mpf
7.0652330370000005
vioscreen_m_nutsd
0.346657531
vioscreen_m_organ
0.0
vioscreen_m_poult
4.740739713
vioscreen_m_soy
0.060328763
vioscreen_magnes
172.11099099999998
vioscreen_maltitol
0.0
vioscreen_maltose
1.60816433
vioscreen_mangan
1.905616405
vioscreen_mannitol
0.123616435
vioscreen_methhis3
28.48526327
vioscreen_methion
1.80293136
vioscreen_mfa141
0.057561644
vioscreen_mfa161
0.9990958440000001
vioscreen_mfa181
17.07257732
vioscreen_mfa201
0.19227397300000001
vioscreen_mfa221
0.008191781
vioscreen_mfatot
18.53525926
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
4.451918009
vioscreen_nccglbr
78.42287564
vioscreen_nccglgr
54.84920805
vioscreen_niacin
18.27183621
vioscreen_niacineq
31.25016321
vioscreen_nitrogen
11.68561778
vioscreen_non_fried_fish_servings
0.50846
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.828602579
vioscreen_oxalic
64.71561965
vioscreen_oxalicm
73.61254281
vioscreen_pantothe
2.9015344069999998
vioscreen_pectins
1.221260217
vioscreen_pfa182
6.672383347999999
vioscreen_pfa183
0.690411001
vioscreen_pfa184
0.000356164
vioscreen_pfa204
0.216904105
vioscreen_pfa205
0.026904109
vioscreen_pfa225
0.041972602000000005
vioscreen_pfa226
0.070164385
vioscreen_pfatot
7.802547089
vioscreen_phenylal
2.977205627
vioscreen_phosphor
713.9130565
vioscreen_phytic
461.15517980000004
vioscreen_pinitol
0.002082192
vioscreen_potass
1342.413784
vioscreen_procdate
10/28/15
vioscreen_proline
3.4156989110000002
vioscreen_protanim
59.44536601
vioscreen_protein
72.17333583
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
12.72832834
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
615.0
vioscreen_retinol
50.88011558
vioscreen_rgrain
1.978301417
vioscreen_ribofla
0.7031506679999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.11619000000000002
vioscreen_satoco
0.177863009
vioscreen_selenium
81.33306400000001
vioscreen_serine
2.888383588
vioscreen_sfa100
0.044383564
vioscreen_sfa120
0.082054797
vioscreen_sfa140
0.47893149999999995
vioscreen_sfa160
7.07887615
vioscreen_sfa170
0.044000004
vioscreen_sfa180
3.1918901839999996
vioscreen_sfa200
0.090410959
vioscreen_sfa220
0.075479455
vioscreen_sfa40
0.052410957
vioscreen_sfa60
0.015780821
vioscreen_sfa80
0.015753425
vioscreen_sfatot
11.35734295
vioscreen_sodium
1655.191438
vioscreen_sorbitol
0.18906849899999997
vioscreen_srvid
16904.0
vioscreen_starch
44.83561376
vioscreen_started
1/15/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
9.668574754
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.476493104
vioscreen_tfa161t
0.024493152
vioscreen_tfa181t
0.6616986
vioscreen_tfa182t
0.19438355300000001
vioscreen_tgrain
2.526712329
vioscreen_thiamin
0.66013702
vioscreen_threonin
2.925671219
vioscreen_time
14.0
vioscreen_totaltfa
0.902054795
vioscreen_totcla
0.052191784000000005
vioscreen_totfolat
116.14967890000001
vioscreen_totsugar
28.94257545
vioscreen_tryptoph
0.7784109459999999
vioscreen_tyrosine
2.42879438
vioscreen_user_id
16904.0
vioscreen_v_drkgr
0.12221918
vioscreen_v_orange
0.146849311
vioscreen_v_other
0.307589053
vioscreen_v_potato
0.163589039
vioscreen_v_starcy
0.013534247
vioscreen_v_tomato
0.09416438099999999
vioscreen_v_total
0.8479177809999999
vioscreen_valine
3.592986475
vioscreen_veg5_day
1.1
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
1.7
vioscreen_visit
1.0
vioscreen_vita_iu
5342.803082
vioscreen_vita_rae
309.57829619999995
vioscreen_vita_re
568.2766695
vioscreen_vitb12
2.043150518
vioscreen_vitb6
1.451013685
vioscreen_vitc
40.18710135
vioscreen_vitd
0.558082183
vioscreen_vitd2
0.0019178079999999998
vioscreen_vitd3
0.556164384
vioscreen_vitd_iu
22.32328734
vioscreen_vite_iu
6.820768006000001
vioscreen_vitk
82.36175621
vioscreen_water
1858.621404
vioscreen_weight
Not provided
vioscreen_wgrain
0.548410954
vioscreen_whole_grain_servings
0.14447000000000002
vioscreen_xylitol
0.018082192
vioscreen_zinc
8.834932176
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
50.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)