American Gut Project; 10317.000027666
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633214
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-05T17:27:24Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027666
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27666
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1975.0
bmi
22.6
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-18
collection month
May
collection season
Spring
collection time
07:30
collection_timestamp
2015-05-18 07:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
12.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
f89c272f7925c4db735a5c04a9a3f3f9e92eaa3b4c794cabd8d9136ee65a6b76aea37b926315c2eaa0d3e54687f55e189ed3479babfbdfee92bf189e3cdb3bd6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
48.8
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-122.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
Not provided
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027666
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
Not provided
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
afecda7d7aeefacb
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
3.401616345
vioscreen_a_cal
377.2396404
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.38010956
vioscreen_addsugar
54.346634200000004
vioscreen_adsugtot
46.11256956
vioscreen_age
215.0
vioscreen_alanine
4.013288273
vioscreen_alcohol
50.19273866
vioscreen_alcohol_servings
3.40162
vioscreen_alphacar
856.3620719
vioscreen_alphtoce
13.57717921
vioscreen_alphtoco
11.95235579
vioscreen_arginine
4.755725599
vioscreen_ash
21.37506689
vioscreen_aspartam
0.0
vioscreen_aspartic
7.581260702000001
vioscreen_avcarb
215.145869
vioscreen_bcodeid
Not provided
vioscreen_betacar
4712.810274
vioscreen_betacryp
80.44964683
vioscreen_betaine
102.5081122
vioscreen_betatoco
0.5008493079999999
vioscreen_biochana
0.021534247000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
180.43107880000002
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.8165200000000001
vioscreen_calcium_servings
3.57345
vioscreen_calories
2582.036815
vioscreen_carbo
235.97752569999997
vioscreen_cholest
412.8735017
vioscreen_choline
425.4952483
vioscreen_clac9t11
0.150904136
vioscreen_clat10c12
0.030328766
vioscreen_copper
1.315671069
vioscreen_coumest
0.307999995
vioscreen_cystine
1.113534337
vioscreen_d_cheese
1.2904109590000001
vioscreen_d_milk
0.310767145
vioscreen_d_tot_soym
1.8165206280000001
vioscreen_d_total
1.8165206280000001
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
1.721123348
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.9212054530000002
vioscreen_discfat_oil
36.23054366
vioscreen_discfat_sol
55.79463292
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0016712329999999998
vioscreen_f_citmlb
0.27528766
vioscreen_f_nj_citmlb
0.22158905399999998
vioscreen_f_nj_other
0.553287663
vioscreen_f_nj_total
0.774904183
vioscreen_f_other
0.5550137039999999
vioscreen_f_total
0.8303014470000001
vioscreen_fat
110.3491759
vioscreen_fiber
20.57136799
vioscreen_fibh2o
6.87928818
vioscreen_fibinso
13.65369756
vioscreen_finished
5/14/15
vioscreen_fish_servings
1.49981
vioscreen_fol_deqv
416.49970030000003
vioscreen_fol_nat
241.80984590000003
vioscreen_fol_syn
102.7340432
vioscreen_formontn
0.0019178079999999998
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
0.8
vioscreen_frtsumm
1.7
vioscreen_fructose
16.70657909
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
5.875726402000001
vioscreen_g_total
6.791917272999999
vioscreen_g_whl
0.916219131
vioscreen_galactos
0.53863007
vioscreen_gammtoco
13.35413634
vioscreen_gender
false
vioscreen_genistn
2.220164176
vioscreen_glac
110.649208
vioscreen_gltc
118.92517120000001
vioscreen_glucose
17.89882411
vioscreen_glutamic
16.40805463
vioscreen_glycine
3.501561831
vioscreen_glycitn
0.326054821
vioscreen_grams
2893.937329
vioscreen_hei2010_dairy
5.4
vioscreen_hei2010_empty_calories
11.8
vioscreen_hei2010_fatty_acids
3.9
vioscreen_hei2010_fruit
2.0
vioscreen_hei2010_greens_beans
3.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.1
vioscreen_hei2010_score
59.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.5
vioscreen_hei2010_veg
3.8
vioscreen_hei2010_whole_fruit
3.8
vioscreen_hei2010_whole_grains
2.4
vioscreen_hei_drk_g_org_veg_leg
2.5
vioscreen_hei_fruit
2.0
vioscreen_hei_grains
4.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.4
vioscreen_hei_non_juice_frt
3.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.1
vioscreen_hei_score
55.9
vioscreen_hei_sodium
3.6
vioscreen_hei_sol_fat_alc_add_sug
6.1
vioscreen_hei_veg
3.8
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
2.30558965
vioscreen_inositol
0.167013696
vioscreen_iron
14.20619381
vioscreen_isoleuc
3.874465566
vioscreen_isomalt
0.0
vioscreen_joules
10803.242470000001
vioscreen_juice_servings
0.11093
vioscreen_lactitol
0.0
vioscreen_lactose
7.3469044310000005
vioscreen_legumes
0.118904114
vioscreen_leucine
6.727149775
vioscreen_line_gi
433.7001284
vioscreen_low_fat_dairy_serving
0.21361999999999998
vioscreen_lutzeax
3190.813014
vioscreen_lycopene
8243.415068
vioscreen_lysine
5.582986074
vioscreen_m_egg
1.124767063
vioscreen_m_fish_hi
0.407972613
vioscreen_m_fish_lo
0.446684955
vioscreen_m_frank
0.9242739320000001
vioscreen_m_meat
1.3532055159999998
vioscreen_m_mpf
3.8612053860000004
vioscreen_m_nutsd
1.210246549
vioscreen_m_organ
0.0
vioscreen_m_poult
0.729068453
vioscreen_m_soy
0.130931488
vioscreen_magnes
326.1925728
vioscreen_maltitol
0.0
vioscreen_maltose
3.23104131
vioscreen_mangan
3.940192236
vioscreen_mannitol
0.433725937
vioscreen_methhis3
13.96315015
vioscreen_methion
1.929177982
vioscreen_mfa141
0.12676711400000001
vioscreen_mfa161
1.7053424990000001
vioscreen_mfa181
37.22652504
vioscreen_mfa201
0.47520551299999997
vioscreen_mfa221
0.073287676
vioscreen_mfatot
39.98588131
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
11.90076654
vioscreen_nccglbr
183.7641695
vioscreen_nccglgr
128.5583476
vioscreen_niacin
20.24194537
vioscreen_niacineq
35.9868231
vioscreen_nitrogen
13.85035852
vioscreen_non_fried_fish_servings
1.49981
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.174849335
vioscreen_oxalic
212.80327480000003
vioscreen_oxalicm
193.6108733
vioscreen_pantothe
5.684657936
vioscreen_pectins
2.5165751419999998
vioscreen_pfa182
21.33131288
vioscreen_pfa183
1.9090139730000002
vioscreen_pfa184
0.017041096999999998
vioscreen_pfa204
0.18323289
vioscreen_pfa205
0.068657543
vioscreen_pfa225
0.03367123
vioscreen_pfa226
0.146876704
vioscreen_pfatot
23.81093215
vioscreen_phenylal
3.857451975
vioscreen_phosphor
1490.515753
vioscreen_phytic
1022.122774
vioscreen_pinitol
0.017123288
vioscreen_potass
2750.746575
vioscreen_procdate
10/28/15
vioscreen_proline
5.601397287
vioscreen_protanim
55.1195366
vioscreen_protein
85.07635381
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
29.95424337
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
449.0
vioscreen_retinol
389.4230736
vioscreen_rgrain
4.877261143999999
vioscreen_ribofla
1.98586292
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.06364
vioscreen_satoco
0.113178086
vioscreen_selenium
130.01115149999998
vioscreen_serine
4.123918758
vioscreen_sfa100
0.764465666
vioscreen_sfa120
1.227287564
vioscreen_sfa140
3.511150872
vioscreen_sfa160
19.80529083
vioscreen_sfa170
0.17679451699999998
vioscreen_sfa180
8.992603542000001
vioscreen_sfa200
0.246931541
vioscreen_sfa220
0.255726038
vioscreen_sfa40
0.892465753
vioscreen_sfa60
0.46602733
vioscreen_sfa80
0.376739669
vioscreen_sfatot
37.399978600000004
vioscreen_sodium
4110.700685
vioscreen_sorbitol
0.469095936
vioscreen_srvid
18694.0
vioscreen_starch
110.7324058
vioscreen_started
5/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.10975225
vioscreen_sweet_servings
0.97325
vioscreen_tagatose
2.98104131
vioscreen_tfa161t
0.09202739800000001
vioscreen_tfa181t
2.03337001
vioscreen_tfa182t
0.526849282
vioscreen_tgrain
7.318192155
vioscreen_thiamin
1.504739505
vioscreen_threonin
3.22926109
vioscreen_time
38.0
vioscreen_totaltfa
2.678410946
vioscreen_totcla
0.181726053
vioscreen_totfolat
344.542637
vioscreen_totsugar
79.42639662
vioscreen_tryptoph
0.945123458
vioscreen_tyrosine
3.0337526089999995
vioscreen_user_id
18694.0
vioscreen_v_drkgr
0.259808224
vioscreen_v_orange
0.17158903399999997
vioscreen_v_other
0.8117809559999999
vioscreen_v_potato
0.34810958200000003
vioscreen_v_starcy
0.060493145
vioscreen_v_tomato
0.391287691
vioscreen_v_total
2.043396999
vioscreen_valine
4.464136746
vioscreen_veg5_day
2.1
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.1
vioscreen_visit
1.0
vioscreen_vita_iu
9933.891781
vioscreen_vita_rae
821.1916952
vioscreen_vita_re
1252.959075
vioscreen_vitb12
4.232164357
vioscreen_vitb6
1.864794755
vioscreen_vitc
85.97491974
vioscreen_vitd
6.063617027
vioscreen_vitd2
0.005013698
vioscreen_vitd3
6.058657962000001
vioscreen_vitd_iu
242.54468109999996
vioscreen_vite_iu
17.84978195
vioscreen_vitk
191.8649829
vioscreen_water
2422.739555
vioscreen_weight
Not provided
vioscreen_wgrain
2.440958938
vioscreen_whole_grain_servings
0.91622
vioscreen_xylitol
0.039753425
vioscreen_zinc
11.68041256
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily