American Gut Project; 10317.000030135
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634134
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:21Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030135
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030135
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
23.48
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-09-09
collection month
September
collection season
Fall
collection time
08:30
collection_timestamp
2015-09-09 08:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am ambidextrous
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
33.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
175.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2009a961f61168dd576730abb9d91d2305faf2f47eab7b7a69293965e42eeab57d5ab003616d1c91252d455e5f2f6dbdf5988db282e6d5881347ff1f64164751
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
51.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030135
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Self-diagnosed
sleep_duration
8 or more hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
f269627ff6239aa5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
5.929424631
vioscreen_a_cal
728.8650685
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.460411092999999
vioscreen_addsugar
34.70471158
vioscreen_adsugtot
31.22986408
vioscreen_age
215.0
vioscreen_alanine
2.076849282
vioscreen_alcohol
90.80115582
vioscreen_alcohol_servings
5.9294199999999995
vioscreen_alphacar
4679.928425
vioscreen_alphtoce
11.27937045
vioscreen_alphtoco
10.70098593
vioscreen_arginine
2.6226579219999997
vioscreen_ash
22.81054688
vioscreen_aspartam
0.0
vioscreen_aspartic
5.020082071
vioscreen_avcarb
229.3198844
vioscreen_bcodeid
Not provided
vioscreen_betacar
20091.01096
vioscreen_betacryp
191.2592894
vioscreen_betaine
81.36639555
vioscreen_betatoco
0.178383522
vioscreen_biochana
0.014931508000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
355.9235017
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.58197
vioscreen_calcium_servings
3.90332
vioscreen_calories
2431.719007
vioscreen_carbo
267.8606592
vioscreen_cholest
131.73089679999998
vioscreen_choline
289.96855739999995
vioscreen_clac9t11
0.078767118
vioscreen_clat10c12
0.01060274
vioscreen_copper
1.411890317
vioscreen_coumest
0.178136977
vioscreen_cystine
0.592273953
vioscreen_d_cheese
1.4629314269999998
vioscreen_d_milk
0.11904109800000001
vioscreen_d_tot_soym
1.581972556
vioscreen_d_total
1.581972556
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.186027401
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.183095937
vioscreen_discfat_oil
21.47364485
vioscreen_discfat_sol
38.79917862
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0038356159999999996
vioscreen_f_citmlb
0.568739758
vioscreen_f_nj_citmlb
0.5659178429999999
vioscreen_f_nj_other
3.687589295
vioscreen_f_nj_total
4.253507264
vioscreen_f_other
3.687589295
vioscreen_f_total
4.2563292619999995
vioscreen_fat
68.88657427
vioscreen_fiber
38.51789116
vioscreen_fibh2o
12.24468375
vioscreen_fibinso
26.30994488
vioscreen_finished
9/8/15
vioscreen_fish_servings
1.6776900000000001
vioscreen_fol_deqv
411.54028250000005
vioscreen_fol_nat
380.5532106
vioscreen_fol_syn
18.19463024
vioscreen_formontn
0.001835617
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.0
vioscreen_frtsumm
8.5
vioscreen_fructose
40.52126231
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.975287701
vioscreen_g_total
2.349972576
vioscreen_g_whl
1.374684958
vioscreen_galactos
0.17950686100000002
vioscreen_gammtoco
4.983643247
vioscreen_gender
false
vioscreen_genistn
0.098767121
vioscreen_glac
94.16190069
vioscreen_gltc
106.90772690000001
vioscreen_glucose
33.73772474
vioscreen_glutamic
9.465808942
vioscreen_glycine
1.664822011
vioscreen_glycitn
0.0
vioscreen_grams
4147.5681509999995
vioscreen_hei2010_dairy
5.0
vioscreen_hei2010_empty_calories
6.2
vioscreen_hei2010_fatty_acids
1.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
1.1
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
59.4
vioscreen_hei2010_sea_foods_plant_protiens
3.5
vioscreen_hei2010_sodium
8.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.6
vioscreen_hei_meat_beans
2.3
vioscreen_hei_milk
5.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.4
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
53.5
vioscreen_hei_sodium
6.9
vioscreen_hei_sol_fat_alc_add_sug
0.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.9
vioscreen_height
Not provided
vioscreen_histidin
1.336547935
vioscreen_inositol
0.5024657370000001
vioscreen_iron
13.26871254
vioscreen_isoleuc
2.2631779080000003
vioscreen_isomalt
0.0
vioscreen_joules
10174.30342
vioscreen_juice_servings
0.00564
vioscreen_lactitol
0.0
vioscreen_lactose
3.244219218
vioscreen_legumes
0.096136987
vioscreen_leucine
3.7347395389999996
vioscreen_line_gi
488.1530822
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
19488.7726
vioscreen_lycopene
519.1495291
vioscreen_lysine
3.370547611
vioscreen_m_egg
0.032219179
vioscreen_m_fish_hi
0.612000013
vioscreen_m_fish_lo
0.34402739600000004
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
0.956000007
vioscreen_m_nutsd
0.00279452
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.000109589
vioscreen_magnes
440.12880989999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.6463561180000001
vioscreen_mangan
6.344875722
vioscreen_mannitol
1.489972676
vioscreen_methhis3
3.1529039360000004
vioscreen_methion
0.993205366
vioscreen_mfa141
0.13534247
vioscreen_mfa161
1.0556712529999999
vioscreen_mfa181
26.2478917
vioscreen_mfa201
0.25690412100000004
vioscreen_mfa221
0.11772602
vioscreen_mfatot
28.077753100000002
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
10.70098593
vioscreen_nccglbr
174.41574269999998
vioscreen_nccglgr
122.00658179999999
vioscreen_niacin
12.89923347
vioscreen_niacineq
22.99777932
vioscreen_nitrogen
8.165835697
vioscreen_non_fried_fish_servings
1.6776900000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.41216439
vioscreen_oxalic
555.8243151
vioscreen_oxalicm
534.9927226
vioscreen_pantothe
5.673342519
vioscreen_pectins
8.35290427
vioscreen_pfa182
6.5714255139999995
vioscreen_pfa183
1.111232893
vioscreen_pfa184
0.025205479
vioscreen_pfa204
0.048712331
vioscreen_pfa205
0.079342463
vioscreen_pfa225
0.035260274
vioscreen_pfa226
0.161232862
vioscreen_pfatot
8.116575476
vioscreen_phenylal
2.19904133
vioscreen_phosphor
1287.733048
vioscreen_phytic
651.9236301
vioscreen_pinitol
0.0
vioscreen_potass
4782.9722600000005
vioscreen_procdate
10/28/15
vioscreen_proline
3.2648491010000003
vioscreen_protanim
24.98578232
vioscreen_protein
50.98457834
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.99897795
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
106.0
vioscreen_retinol
300.9881421
vioscreen_rgrain
0.932520535
vioscreen_ribofla
1.9038631069999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.0
vioscreen_selenium
51.35033176
vioscreen_serine
2.3874794319999997
vioscreen_sfa100
0.785945276
vioscreen_sfa120
1.577726014
vioscreen_sfa140
3.36241037
vioscreen_sfa160
13.21139635
vioscreen_sfa170
0.111643836
vioscreen_sfa180
5.339479546000001
vioscreen_sfa200
0.126465774
vioscreen_sfa220
0.047287672
vioscreen_sfa40
0.8147945870000001
vioscreen_sfa60
0.448301341
vioscreen_sfa80
0.403397275
vioscreen_sfatot
26.81311804
vioscreen_sodium
2973.248288
vioscreen_sorbitol
3.0507672039999996
vioscreen_srvid
20659.0
vioscreen_starch
60.67104024
vioscreen_started
9/8/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.47975171
vioscreen_sweet_servings
0.9278799999999999
vioscreen_tagatose
0.36361644200000004
vioscreen_tfa161t
0.092164392
vioscreen_tfa181t
1.5164109319999999
vioscreen_tfa182t
0.321506866
vioscreen_tgrain
2.238246803
vioscreen_thiamin
1.06353417
vioscreen_threonin
1.910876632
vioscreen_time
42.0
vioscreen_totaltfa
1.942876946
vioscreen_totcla
0.089506844
vioscreen_totfolat
398.74764550000003
vioscreen_totsugar
120.62867079999998
vioscreen_tryptoph
0.608712351
vioscreen_tyrosine
1.7864928359999999
vioscreen_user_id
20659.0
vioscreen_v_drkgr
1.205150698
vioscreen_v_orange
0.798712325
vioscreen_v_other
1.8944658669999999
vioscreen_v_potato
0.7475342629999999
vioscreen_v_starcy
0.139726027
vioscreen_v_tomato
0.031780823
vioscreen_v_total
4.817370104
vioscreen_valine
2.666712429
vioscreen_veg5_day
7.8
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
9.6
vioscreen_visit
1.0
vioscreen_vita_iu
38548.23288
vioscreen_vita_rae
2178.206507
vioscreen_vita_re
4055.4239729999995
vioscreen_vitb12
1.970739579
vioscreen_vitb6
2.618630104
vioscreen_vitc
202.380351
vioscreen_vitd
6.312739457999999
vioscreen_vitd2
0.0
vioscreen_vitd3
6.312739457999999
vioscreen_vitd_iu
252.50957830000002
vioscreen_vite_iu
15.92506823
vioscreen_vitk
872.2900685000001
vioscreen_water
3668.494521
vioscreen_weight
Not provided
vioscreen_wgrain
1.305726017
vioscreen_whole_grain_servings
1.37468
vioscreen_xylitol
0.15695890699999998
vioscreen_zinc
8.258109482
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Daily