10317.000022143; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633000
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:27:11Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022143
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22143
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
22.65
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-25
collection month
March
collection season
Spring
collection time
22:10
collection_timestamp
2015-03-25 22:10
consume_animal_products_abx
Not sure
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Rarely (a few times/month)
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
64.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
Australia
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
daa4973cd2025f68fd7a7681cf5c464a576973cd224da11eb72c11554ba6efd3e9809286515acef72db323f485bdde82a83c38165247fab895b5893ab451859b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-37.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
147.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000022143
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
VIC
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
82c6a5ce37290d45
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.23101369800000002
vioscreen_a_cal
30.265231699999998
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.292054728
vioscreen_addsugar
26.70980843
vioscreen_adsugtot
21.72936911
vioscreen_age
215.0
vioscreen_alanine
2.672685179
vioscreen_alcohol
3.4840823660000004
vioscreen_alcohol_servings
0.23101
vioscreen_alphacar
4041.866096
vioscreen_alphtoce
10.53273959
vioscreen_alphtoco
9.895945928
vioscreen_arginine
2.922219472
vioscreen_ash
14.98638297
vioscreen_aspartam
0.0
vioscreen_aspartic
4.925315042
vioscreen_avcarb
103.9895548
vioscreen_bcodeid
Not provided
vioscreen_betacar
14531.75753
vioscreen_betacryp
128.2529324
vioscreen_betaine
97.56323844
vioscreen_betatoco
0.182547917
vioscreen_biochana
0.009260274
vioscreen_bmi
Not provided
vioscreen_caffeine
84.03974743
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.50271
vioscreen_calcium_servings
2.09649
vioscreen_calories
1384.004281
vioscreen_carbo
124.30108090000002
vioscreen_cholest
254.32581340000002
vioscreen_choline
296.9491866
vioscreen_clac9t11
0.149753445
vioscreen_clat10c12
0.035013697999999996
vioscreen_copper
0.98539713
vioscreen_coumest
0.05690411099999999
vioscreen_cystine
0.679424798
vioscreen_d_cheese
0.048301368
vioscreen_d_milk
0.062630139
vioscreen_d_tot_soym
0.502712386
vioscreen_d_total
0.502712386
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
0.09052055
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.041972706
vioscreen_discfat_oil
28.73781036
vioscreen_discfat_sol
33.0166845
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0009589039999999999
vioscreen_f_citmlb
0.298821938
vioscreen_f_nj_citmlb
0.292602748
vioscreen_f_nj_other
0.581671268
vioscreen_f_nj_total
0.8743013559999999
vioscreen_f_other
0.581671268
vioscreen_f_total
0.880520504
vioscreen_fat
76.97712436
vioscreen_fiber
20.31246656
vioscreen_fibh2o
5.351451132
vioscreen_fibinso
15.03895949
vioscreen_finished
2/11/15
vioscreen_fish_servings
1.5126899999999999
vioscreen_fol_deqv
301.6353596
vioscreen_fol_nat
276.86560360000004
vioscreen_fol_syn
14.56476616
vioscreen_formontn
0.001890411
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.8
vioscreen_fructose
11.54643755
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
0.76290417
vioscreen_g_total
2.246849583
vioscreen_g_whl
1.48397267
vioscreen_galactos
0.617205476
vioscreen_gammtoco
5.531561697000001
vioscreen_gender
false
vioscreen_genistn
0.08602739599999999
vioscreen_glac
47.34545163
vioscreen_gltc
53.48223994
vioscreen_glucose
12.36337088
vioscreen_glutamic
8.755232636
vioscreen_glycine
2.301698617
vioscreen_glycitn
0.009589041
vioscreen_grams
1717.475514
vioscreen_hei2010_dairy
2.8
vioscreen_hei2010_empty_calories
15.0
vioscreen_hei2010_fatty_acids
4.5
vioscreen_hei2010_fruit
4.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.4
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
0.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.0
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.8
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
62.4
vioscreen_hei_sodium
0.2
vioscreen_hei_sol_fat_alc_add_sug
14.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.6
vioscreen_height
Not provided
vioscreen_histidin
1.3931509359999998
vioscreen_inositol
0.062493154
vioscreen_iron
8.579671447
vioscreen_isoleuc
2.279396872
vioscreen_isomalt
0.0
vioscreen_joules
5790.6753420000005
vioscreen_juice_servings
0.012490000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
6.708219177999999
vioscreen_legumes
0.051342465
vioscreen_leucine
3.874027785
vioscreen_line_gi
274.75246150000004
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
7831.067808
vioscreen_lycopene
3246.891781
vioscreen_lysine
3.678985847
vioscreen_m_egg
0.588931483
vioscreen_m_fish_hi
0.306575347
vioscreen_m_fish_lo
0.555589065
vioscreen_m_frank
0.62232875
vioscreen_m_meat
1.884246575
vioscreen_m_mpf
3.495945259
vioscreen_m_nutsd
0.173123284
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.05967123
vioscreen_m_soy
0.00030137
vioscreen_magnes
226.7130137
vioscreen_maltitol
0.0
vioscreen_maltose
4.599945486
vioscreen_mangan
2.802958616
vioscreen_mannitol
0.322849326
vioscreen_methhis3
10.45235646
vioscreen_methion
1.176027564
vioscreen_mfa141
0.08956165099999999
vioscreen_mfa161
1.353725904
vioscreen_mfa181
31.80626605
vioscreen_mfa201
0.259972601
vioscreen_mfa221
0.036849315
vioscreen_mfatot
33.69782481
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.895945928
vioscreen_nccglbr
81.39686965
vioscreen_nccglgr
56.93278039
vioscreen_niacin
14.96855067
vioscreen_niacineq
23.572519800000002
vioscreen_nitrogen
8.420904457
vioscreen_non_fried_fish_servings
1.5126899999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.547506923
vioscreen_oxalic
282.6307149
vioscreen_oxalicm
276.8164384
vioscreen_pantothe
4.203835014
vioscreen_pectins
4.279808567
vioscreen_pfa182
10.19142364
vioscreen_pfa183
1.399506786
vioscreen_pfa184
0.008383561
vioscreen_pfa204
0.089835619
vioscreen_pfa205
0.033890413
vioscreen_pfa225
0.013643836999999999
vioscreen_pfa226
0.092547942
vioscreen_pfatot
11.86559289
vioscreen_phenylal
2.188849629
vioscreen_phosphor
847.7887842
vioscreen_phytic
350.0038313
vioscreen_pinitol
0.0027123290000000003
vioscreen_potass
2478.290582
vioscreen_procdate
10/28/15
vioscreen_proline
2.822877314
vioscreen_protanim
34.51611194
vioscreen_protein
52.01843964
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.496329199999998
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
563.0
vioscreen_retinol
430.99058219999995
vioscreen_rgrain
0.868109549
vioscreen_ribofla
1.276410915
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.18499
vioscreen_satoco
0.0
vioscreen_selenium
77.5599101
vioscreen_serine
2.326301303
vioscreen_sfa100
0.6368766889999999
vioscreen_sfa120
0.665260252
vioscreen_sfa140
2.2821648580000002
vioscreen_sfa160
14.02885006
vioscreen_sfa170
0.17753423399999999
vioscreen_sfa180
5.724493659
vioscreen_sfa200
0.164164347
vioscreen_sfa220
0.087698626
vioscreen_sfa40
0.7804110590000001
vioscreen_sfa60
0.473589043
vioscreen_sfa80
0.28805479300000003
vioscreen_sfatot
25.44978328
vioscreen_sodium
2733.0097600000004
vioscreen_sorbitol
0.497123196
vioscreen_srvid
17131.0
vioscreen_starch
31.43539705
vioscreen_started
2/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
20.71709787
vioscreen_sweet_servings
0.11615
vioscreen_tagatose
3.175397648
vioscreen_tfa161t
0.03630137
vioscreen_tfa181t
1.50246582
vioscreen_tfa182t
0.251479455
vioscreen_tgrain
1.8281096159999999
vioscreen_thiamin
0.85460272
vioscreen_threonin
2.11101325
vioscreen_time
30.0
vioscreen_totaltfa
1.83315112
vioscreen_totcla
0.184602732
vioscreen_totfolat
291.4303296
vioscreen_totsugar
57.13461045
vioscreen_tryptoph
0.516849298
vioscreen_tyrosine
1.701260501
vioscreen_user_id
17131.0
vioscreen_v_drkgr
0.7777808620000001
vioscreen_v_orange
0.7780821920000001
vioscreen_v_other
1.319123234
vioscreen_v_potato
0.098027394
vioscreen_v_starcy
0.119698626
vioscreen_v_tomato
0.346575342
vioscreen_v_total
3.43934276
vioscreen_valine
2.664410818
vioscreen_veg5_day
6.8
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.9
vioscreen_visit
1.0
vioscreen_vita_iu
29130.24384
vioscreen_vita_rae
1815.726884
vioscreen_vita_re
3200.459932
vioscreen_vitb12
4.29082165
vioscreen_vitb6
1.513890264
vioscreen_vitc
111.9811858
vioscreen_vitd
4.2979171130000005
vioscreen_vitd2
0.732657571
vioscreen_vitd3
3.5652601269999997
vioscreen_vitd_iu
171.9166845
vioscreen_vite_iu
14.7635595
vioscreen_vitk
341.39691780000004
vioscreen_water
1458.043151
vioscreen_weight
Not provided
vioscreen_wgrain
0.9600000670000001
vioscreen_whole_grain_servings
1.48397
vioscreen_xylitol
0.033013702
vioscreen_zinc
7.879123635
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
67.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)