10317.000027736; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633524
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:54Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027736
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
33.0
age_corrected
33.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
27736
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
21.31
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Not provided
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/12/2015
collection month
June
collection season
Summer
collection time
14:11
collection_timestamp
2015-06-12 14:11
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
178.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
167.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
4eb84497b9175e7d9f4ac898f247ecea666f29b60cd9605c63fd1470d4824a88c7818821ae22d99ddd1adc2f6134a88a1983a26c4f8014fef4ae71e979e81321
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
41.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-87.6
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
true
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000027736
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
23396184bff81e7c
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.78621843
vioscreen_addsugar
51.21706443
vioscreen_adsugtot
43.70273705
vioscreen_age
215.0
vioscreen_alanine
4.26167126
vioscreen_alcohol
0.019616439
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
733.7163527
vioscreen_alphtoce
10.09704155
vioscreen_alphtoco
9.087699995
vioscreen_arginine
5.114740074
vioscreen_ash
19.20065951
vioscreen_aspartam
0.0
vioscreen_aspartic
8.332163688
vioscreen_avcarb
162.95329619999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
4264.958904
vioscreen_betacryp
57.87687821
vioscreen_betaine
67.04591182
vioscreen_betatoco
0.305123253
vioscreen_biochana
0.0045753420000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
72.30528682
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
3.53879
vioscreen_calcium_servings
5.04101
vioscreen_calories
1765.273973
vioscreen_carbo
181.0505565
vioscreen_cholest
236.40702050000002
vioscreen_choline
351.75751280000003
vioscreen_clac9t11
0.090054792
vioscreen_clat10c12
0.018575341999999998
vioscreen_copper
1.199424681
vioscreen_coumest
0.046383562
vioscreen_cystine
1.074575346
vioscreen_d_cheese
1.105479452
vioscreen_d_milk
1.673424791
vioscreen_d_tot_soym
3.538794614
vioscreen_d_total
3.538794614
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.374794529
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.918356198
vioscreen_discfat_oil
24.97819456
vioscreen_discfat_sol
32.23520441
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000273973
vioscreen_f_citmlb
0.244383532
vioscreen_f_nj_citmlb
0.238657536
vioscreen_f_nj_other
0.206438352
vioscreen_f_nj_total
0.44509586700000003
vioscreen_f_other
0.206438352
vioscreen_f_total
0.450821884
vioscreen_fat
79.21919949
vioscreen_fiber
17.78334493
vioscreen_fibh2o
5.3898086339999995
vioscreen_fibinso
12.49531651
vioscreen_finished
5/26/15
vioscreen_fish_servings
1.3040399999999999
vioscreen_fol_deqv
298.7370505
vioscreen_fol_nat
207.9909247
vioscreen_fol_syn
53.35860445
vioscreen_formontn
0.002246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.051089999999999997
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
7.253425326
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
1.3663835080000002
vioscreen_g_total
3.761918076
vioscreen_g_whl
2.395506976
vioscreen_galactos
1.053369893
vioscreen_gammtoco
6.444630244
vioscreen_gender
false
vioscreen_genistn
0.579534243
vioscreen_glac
76.144253
vioscreen_gltc
83.83122325
vioscreen_glucose
8.325780581
vioscreen_glutamic
17.63956148
vioscreen_glycine
3.701068868
vioscreen_glycitn
0.091232875
vioscreen_grams
2966.113356
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
15.0
vioscreen_hei2010_fatty_acids
4.0
vioscreen_hei2010_fruit
1.6
vioscreen_hei2010_greens_beans
3.4
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
5.6
vioscreen_hei2010_veg
3.1
vioscreen_hei2010_whole_fruit
3.2
vioscreen_hei2010_whole_grains
9.0
vioscreen_hei_drk_g_org_veg_leg
2.8
vioscreen_hei_fruit
1.6
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.2
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
2.3
vioscreen_hei_score
71.1
vioscreen_hei_sodium
4.5
vioscreen_hei_sol_fat_alc_add_sug
15.5
vioscreen_hei_veg
3.1
vioscreen_hei_whl_grains
4.5
vioscreen_height
Not provided
vioscreen_histidin
2.5722188040000002
vioscreen_inositol
0.07750684099999999
vioscreen_iron
10.92394518
vioscreen_isoleuc
4.294246308
vioscreen_isomalt
0.0
vioscreen_joules
7385.902055
vioscreen_juice_servings
0.01142
vioscreen_lactitol
0.0
vioscreen_lactose
32.69967359
vioscreen_legumes
0.014356164
vioscreen_leucine
7.680409889
vioscreen_line_gi
365.28878419999995
vioscreen_low_fat_dairy_serving
2.41019
vioscreen_lutzeax
5198.883562
vioscreen_lycopene
1893.8976030000001
vioscreen_lysine
6.746519826
vioscreen_m_egg
0.31178083
vioscreen_m_fish_hi
0.644794537
vioscreen_m_fish_lo
0.09830137300000001
vioscreen_m_frank
0.028712328
vioscreen_m_meat
1.851726041
vioscreen_m_mpf
3.817780795
vioscreen_m_nutsd
2.235013612
vioscreen_m_organ
0.0
vioscreen_m_poult
1.194246559
vioscreen_m_soy
0.023342467000000002
vioscreen_magnes
361.2492295
vioscreen_maltitol
0.0
vioscreen_maltose
1.8667124290000001
vioscreen_mangan
3.6438349480000003
vioscreen_mannitol
0.095534244
vioscreen_methhis3
16.35293236
vioscreen_methion
2.2019175069999997
vioscreen_mfa141
0.146849321
vioscreen_mfa161
1.253369893
vioscreen_mfa181
30.58438035
vioscreen_mfa201
0.413232882
vioscreen_mfa221
0.12564382699999999
vioscreen_mfatot
32.83123662
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.894988094
vioscreen_nccglbr
123.3263592
vioscreen_nccglgr
86.26445848
vioscreen_niacin
17.28079383
vioscreen_niacineq
33.61323042
vioscreen_nitrogen
14.93553484
vioscreen_non_fried_fish_servings
1.3040399999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.104575463
vioscreen_oxalic
207.19342890000001
vioscreen_oxalicm
246.9571704
vioscreen_pantothe
5.881012547999999
vioscreen_pectins
2.288767357
vioscreen_pfa182
11.64578072
vioscreen_pfa183
0.749451938
vioscreen_pfa184
0.029232877
vioscreen_pfa204
0.120794521
vioscreen_pfa205
0.095123291
vioscreen_pfa225
0.047780829000000004
vioscreen_pfa226
0.18397260699999998
vioscreen_pfatot
12.96194349
vioscreen_phenylal
4.311534808
vioscreen_phosphor
1776.3811640000001
vioscreen_phytic
758.3464041
vioscreen_pinitol
0.001643836
vioscreen_potass
2648.984589
vioscreen_procdate
10/28/15
vioscreen_proline
6.47868552
vioscreen_protanim
66.91350599
vioscreen_protein
91.94746361
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.01980148
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
426.0
vioscreen_retinol
506.9955051
vioscreen_rgrain
1.360493114
vioscreen_ribofla
2.216712596
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.017669999999999998
vioscreen_satoco
0.427315072
vioscreen_selenium
115.13918020000001
vioscreen_serine
4.702329035
vioscreen_sfa100
0.568219161
vioscreen_sfa120
0.9658631209999999
vioscreen_sfa140
2.73849295
vioscreen_sfa160
14.07449032
vioscreen_sfa170
0.13265754
vioscreen_sfa180
5.60249291
vioscreen_sfa200
0.24216436100000002
vioscreen_sfa220
0.367588994
vioscreen_sfa40
0.642931544
vioscreen_sfa60
0.32528768
vioscreen_sfa80
0.27712329199999997
vioscreen_sfatot
26.65380993
vioscreen_sodium
2637.214384
vioscreen_sorbitol
0.152712333
vioscreen_srvid
18757.0
vioscreen_starch
58.50906464
vioscreen_started
5/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
41.38021993
vioscreen_sweet_servings
1.25861
vioscreen_tagatose
6.740138057
vioscreen_tfa161t
0.079095893
vioscreen_tfa181t
1.340849409
vioscreen_tfa182t
0.298219195
vioscreen_tgrain
4.034520815
vioscreen_thiamin
1.225534099
vioscreen_threonin
3.590520321
vioscreen_time
19.0
vioscreen_totaltfa
1.7332874040000001
vioscreen_totcla
0.10969864300000001
vioscreen_totfolat
261.3490368
vioscreen_totsugar
93.93712543
vioscreen_tryptoph
0.979835573
vioscreen_tyrosine
3.603452416
vioscreen_user_id
18757.0
vioscreen_v_drkgr
0.22756163699999998
vioscreen_v_orange
0.150684932
vioscreen_v_other
0.19923288
vioscreen_v_potato
0.07671232900000001
vioscreen_v_starcy
0.47227398600000003
vioscreen_v_tomato
0.059369868
vioscreen_v_total
1.185808406
vioscreen_valine
5.198575289
vioscreen_veg5_day
2.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
2.4
vioscreen_visit
1.0
vioscreen_vita_iu
9458.891096
vioscreen_vita_rae
895.3918663999999
vioscreen_vita_re
1283.7882710000001
vioscreen_vitb12
6.361342171
vioscreen_vitb6
1.502986542
vioscreen_vitc
45.01918343
vioscreen_vitd
9.615369487999999
vioscreen_vitd2
0.000410959
vioscreen_vitd3
9.614985552
vioscreen_vitd_iu
384.6147795
vioscreen_vite_iu
13.67566754
vioscreen_vitk
187.6450771
vioscreen_water
2614.192808
vioscreen_weight
Not provided
vioscreen_wgrain
2.674000027
vioscreen_whole_grain_servings
2.39551
vioscreen_xylitol
0.009232876
vioscreen_zinc
14.18131689
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
59.0
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily