American Gut Project; 10317.000029998
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633752
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029998
acid_reflux
Not provided
acne medication
true
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
20s
age years
26.0
age_corrected
26.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
29998
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1989.0
bmi
21.22
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
07/10/2015
collection month
July
collection season
Summer
collection time
09:25
collection_timestamp
2015-07-10 09:25
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
37.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
188.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
137498ca182e9d41bbf9dcbd9ae63f0e96fdfd6dd60e5cb67ce52073f4b4bfba7a35b0d06ec92b157c065f7479f3b23744c931b40f9003aba3cb3a82b80612cf
host taxid
9606
ibd
Not provided
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
6 months
latitude
51.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Not provided
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000029998
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
Not provided
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
c33bbd737f821618
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000136986
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.760027156
vioscreen_addsugar
13.5298079
vioscreen_adsugtot
12.63454757
vioscreen_age
215.0
vioscreen_alanine
2.373068279
vioscreen_alcohol
0.0009589039999999999
vioscreen_alcohol_servings
0.00014
vioscreen_alphacar
5115.904452000001
vioscreen_alphtoce
7.888821035
vioscreen_alphtoco
7.072986676
vioscreen_arginine
2.599479445
vioscreen_ash
15.04142899
vioscreen_aspartam
0.0
vioscreen_aspartic
4.9401641430000005
vioscreen_avcarb
168.1098031
vioscreen_bcodeid
Not provided
vioscreen_betacar
13076.575340000001
vioscreen_betacryp
64.95742188
vioscreen_betaine
82.84096747
vioscreen_betatoco
0.22167124300000002
vioscreen_biochana
0.00580822
vioscreen_bmi
Not provided
vioscreen_caffeine
118.84369650000001
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
0.65455
vioscreen_calcium_servings
1.60866
vioscreen_calories
1253.342979
vioscreen_carbo
190.3127997
vioscreen_cholest
119.84396399999999
vioscreen_choline
211.4245077
vioscreen_clac9t11
0.036465749
vioscreen_clat10c12
0.00660274
vioscreen_copper
1.142027471
vioscreen_coumest
0.057671235999999994
vioscreen_cystine
0.6760546959999999
vioscreen_d_cheese
0.39580822299999996
vioscreen_d_milk
0.256246572
vioscreen_d_tot_soym
0.654547955
vioscreen_d_total
0.654547955
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.042986303
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.4251234080000001
vioscreen_discfat_oil
16.26120773
vioscreen_discfat_sol
12.16865636
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.210383564
vioscreen_f_nj_citmlb
0.107753419
vioscreen_f_nj_other
1.6032328569999998
vioscreen_f_nj_total
1.710986161
vioscreen_f_other
1.6032328569999998
vioscreen_f_total
1.8136163580000002
vioscreen_fat
37.72288367
vioscreen_fiber
22.10624732
vioscreen_fibh2o
6.005014582
vioscreen_fibinso
16.18251552
vioscreen_finished
7/10/15
vioscreen_fish_servings
1.3209600000000001
vioscreen_fol_deqv
403.87119010000004
vioscreen_fol_nat
241.27780389999998
vioscreen_fol_syn
95.61553938
vioscreen_formontn
0.0004931509999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
2.1
vioscreen_frtsumm
3.6
vioscreen_fructose
16.35414036
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.575918036
vioscreen_g_total
2.960438182
vioscreen_g_whl
0.38449314100000004
vioscreen_galactos
0.08589040699999999
vioscreen_gammtoco
6.139725359
vioscreen_gender
false
vioscreen_genistn
0.06210958900000001
vioscreen_glac
94.27644478
vioscreen_gltc
104.2576627
vioscreen_glucose
17.412904
vioscreen_glutamic
9.46147996
vioscreen_glycine
2.030109562
vioscreen_glycitn
0.009424657
vioscreen_grams
3331.5941780000003
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
6.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.6
vioscreen_hei2010_refined_grains
9.0
vioscreen_hei2010_score
71.2
vioscreen_hei2010_sea_foods_plant_protiens
4.1
vioscreen_hei2010_sodium
1.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.9
vioscreen_hei_meat_beans
9.1
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.3
vioscreen_hei_score
78.2
vioscreen_hei_sodium
0.9
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.0
vioscreen_height
Not provided
vioscreen_histidin
1.411177795
vioscreen_inositol
0.055753431
vioscreen_iron
8.677972496
vioscreen_isoleuc
2.176685239
vioscreen_isomalt
0.0
vioscreen_joules
5243.986986
vioscreen_juice_servings
0.20518000000000003
vioscreen_lactitol
0.0
vioscreen_lactose
3.911533805
vioscreen_legumes
0.011123288
vioscreen_leucine
3.6267390839999996
vioscreen_line_gi
420.48270549999995
vioscreen_low_fat_dairy_serving
0.07805
vioscreen_lutzeax
2930.843836
vioscreen_lycopene
5634.621233
vioscreen_lysine
3.2298078980000002
vioscreen_m_egg
0.160164381
vioscreen_m_fish_hi
0.646383583
vioscreen_m_fish_lo
0.106383567
vioscreen_m_frank
0.247917802
vioscreen_m_meat
0.43564382100000004
vioscreen_m_mpf
2.619013705
vioscreen_m_nutsd
0.027068493
vioscreen_m_organ
0.0
vioscreen_m_poult
1.182712335
vioscreen_m_soy
0.002465754
vioscreen_magnes
259.73760699999997
vioscreen_maltitol
0.0
vioscreen_maltose
0.797233017
vioscreen_mangan
3.766109602
vioscreen_mannitol
0.393561627
vioscreen_methhis3
9.538356164
vioscreen_methion
1.056958928
vioscreen_mfa141
0.045561647000000004
vioscreen_mfa161
0.638493117
vioscreen_mfa181
12.86586312
vioscreen_mfa201
0.208301387
vioscreen_mfa221
0.122849305
vioscreen_mfatot
14.01800219
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.991397555
vioscreen_nccglbr
142.8017872
vioscreen_nccglgr
99.88172089
vioscreen_niacin
16.66676878
vioscreen_niacineq
25.94347977
vioscreen_nitrogen
7.800383936
vioscreen_non_fried_fish_servings
1.3209600000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.261780788
vioscreen_oxalic
225.98285530000004
vioscreen_oxalicm
196.27414380000002
vioscreen_pantothe
4.114711647
vioscreen_pectins
4.468740636000001
vioscreen_pfa182
7.338164865
vioscreen_pfa183
0.9158354459999999
vioscreen_pfa184
0.027342464
vioscreen_pfa204
0.08947945199999999
vioscreen_pfa205
0.086958909
vioscreen_pfa225
0.042931507
vioscreen_pfa226
0.18926027899999998
vioscreen_pfatot
8.753478168
vioscreen_phenylal
2.123260414
vioscreen_phosphor
755.9077911
vioscreen_phytic
437.9951199
vioscreen_pinitol
0.002767123
vioscreen_potass
3129.913356
vioscreen_procdate
10/28/15
vioscreen_proline
2.827287899
vioscreen_protanim
28.633839899999998
vioscreen_protein
48.380747
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
19.74778066
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
305.0
vioscreen_retinol
177.5297089
vioscreen_rgrain
2.535917601
vioscreen_ribofla
1.178794631
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.67277
vioscreen_satoco
0.181315069
vioscreen_selenium
65.77115796
vioscreen_serine
2.099780775
vioscreen_sfa100
0.188739745
vioscreen_sfa120
0.404712332
vioscreen_sfa140
0.979725961
vioscreen_sfa160
6.458411815
vioscreen_sfa170
0.059890418
vioscreen_sfa180
2.425780748
vioscreen_sfa200
0.06953425
vioscreen_sfa220
0.036904112999999995
vioscreen_sfa40
0.207342446
vioscreen_sfa60
0.108410958
vioscreen_sfa80
0.11005481
vioscreen_sfatot
11.24742482
vioscreen_sodium
2376.921747
vioscreen_sorbitol
0.060794527
vioscreen_srvid
20113.0
vioscreen_starch
90.28952269
vioscreen_started
7/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
22.03937152
vioscreen_sweet_servings
0.14247
vioscreen_tagatose
0.589342426
vioscreen_tfa161t
0.025178084
vioscreen_tfa181t
0.804493107
vioscreen_tfa182t
0.17241094899999998
vioscreen_tgrain
3.1541641030000003
vioscreen_thiamin
1.0909588540000001
vioscreen_threonin
2.033917654
vioscreen_time
13.0
vioscreen_totaltfa
1.018356198
vioscreen_totcla
0.043616441
vioscreen_totfolat
336.8933861
vioscreen_totsugar
60.67210509
vioscreen_tryptoph
0.557808152
vioscreen_tyrosine
1.557589095
vioscreen_user_id
20113.0
vioscreen_v_drkgr
0.587095872
vioscreen_v_orange
0.9694794959999999
vioscreen_v_other
0.379534201
vioscreen_v_potato
1.17030138
vioscreen_v_starcy
0.004547945
vioscreen_v_tomato
0.251506837
vioscreen_v_total
3.362465887
vioscreen_valine
2.478548066
vioscreen_veg5_day
5.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.7
vioscreen_visit
1.0
vioscreen_vita_iu
26702.043840000002
vioscreen_vita_rae
1483.113014
vioscreen_vita_re
2788.698288
vioscreen_vitb12
2.547424651
vioscreen_vitb6
2.3980002209999998
vioscreen_vitc
132.59961470000002
vioscreen_vitd
4.485973619
vioscreen_vitd2
0.0023287670000000003
vioscreen_vitd3
4.483754615
vioscreen_vitd_iu
179.4389448
vioscreen_vite_iu
10.60695901
vioscreen_vitk
159.3730201
vioscreen_water
3050.735959
vioscreen_weight
Not provided
vioscreen_wgrain
0.618137015
vioscreen_whole_grain_servings
0.38449
vioscreen_xylitol
0.037589047
vioscreen_zinc
5.974521083
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
75.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Never