American Gut Project; 10317.000029315
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634016
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:34Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029315
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
34.0
age_corrected
34.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29315
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1981.0
bmi
22.72
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-28
collection month
July
collection season
Summer
collection time
09:00
collection_timestamp
2015-07-28 09:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Not provided
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
37.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Never
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
178.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
84a3700a7f6743b20b30089abe34269a4fc536b7b5537d028cb8b5d18b5195f72bb44e802478d4f2549621a98c26597c54666e0ee9d937e0a7618395873d7a08
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past month
last_travel
1 year
latitude
51.5
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029315
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
8de2834b362d7f62
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.5339178219999998
vioscreen_a_cal
188.2154966
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.7227672840000001
vioscreen_addsugar
9.111561564
vioscreen_adsugtot
8.278219312000001
vioscreen_age
215.0
vioscreen_alanine
3.051232743
vioscreen_alcohol
23.52550567
vioscreen_alcohol_servings
1.5339200000000002
vioscreen_alphacar
765.2838184999999
vioscreen_alphtoce
15.06298694
vioscreen_alphtoco
14.071864300000001
vioscreen_arginine
3.8894243630000003
vioscreen_ash
21.38158712
vioscreen_aspartam
103.83923370000001
vioscreen_aspartic
6.008767657999999
vioscreen_avcarb
55.28526862
vioscreen_bcodeid
Not provided
vioscreen_betacar
12491.17808
vioscreen_betacryp
73.02459867
vioscreen_betaine
46.64553189
vioscreen_betatoco
0.34882191700000004
vioscreen_biochana
0.002383562
vioscreen_bmi
Not provided
vioscreen_caffeine
191.8924658
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.8184899999999999
vioscreen_calcium_servings
2.61682
vioscreen_calories
1566.243322
vioscreen_carbo
77.16627783
vioscreen_cholest
499.7457192
vioscreen_choline
500.1672517
vioscreen_clac9t11
0.08882192300000001
vioscreen_clat10c12
0.021863015
vioscreen_copper
1.308410895
vioscreen_coumest
0.107041095
vioscreen_cystine
0.826027397
vioscreen_d_cheese
0.7126027559999999
vioscreen_d_milk
0.105890415
vioscreen_d_tot_soym
0.818493151
vioscreen_d_total
0.818493151
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.176109586
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.205178206
vioscreen_discfat_oil
31.80106753
vioscreen_discfat_sol
31.18375696
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.036520545
vioscreen_f_nj_citmlb
0.022246575
vioscreen_f_nj_other
0.835095884
vioscreen_f_nj_total
0.857342446
vioscreen_f_other
0.835095884
vioscreen_f_total
0.871616478
vioscreen_fat
100.0036387
vioscreen_fiber
21.88175433
vioscreen_fibh2o
6.506027932
vioscreen_fibinso
15.47690363
vioscreen_finished
7/28/15
vioscreen_fish_servings
1.1953799999999999
vioscreen_fol_deqv
422.50629280000004
vioscreen_fol_nat
398.72645550000004
vioscreen_fol_syn
13.99161628
vioscreen_formontn
0.001506849
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
1.7
vioscreen_fructose
3.760822787
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
0.591205545
vioscreen_g_total
0.602821956
vioscreen_g_whl
0.011616438
vioscreen_galactos
0.156849315
vioscreen_gammtoco
8.404931641000001
vioscreen_gender
false
vioscreen_genistn
0.090794519
vioscreen_glac
13.85816433
vioscreen_gltc
15.13780902
vioscreen_glucose
5.42578125
vioscreen_glutamic
10.44849302
vioscreen_glycine
2.677314988
vioscreen_glycitn
0.012082191
vioscreen_grams
5054.6599320000005
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
17.6
vioscreen_hei2010_fatty_acids
8.3
vioscreen_hei2010_fruit
3.5
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.5
vioscreen_hei_grains
0.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
55.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
12.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.647150745
vioscreen_inositol
0.138876719
vioscreen_iron
9.331150337
vioscreen_isoleuc
2.797096232
vioscreen_isomalt
0.0
vioscreen_joules
6553.158219
vioscreen_juice_servings
0.0286
vioscreen_lactitol
0.0
vioscreen_lactose
2.113452148
vioscreen_legumes
0.0
vioscreen_leucine
4.714712315
vioscreen_line_gi
75.40421126
vioscreen_low_fat_dairy_serving
0.00603
vioscreen_lutzeax
16710.70822
vioscreen_lycopene
1913.789384
vioscreen_lysine
4.197478663
vioscreen_m_egg
2.005945159
vioscreen_m_fish_hi
0.394958914
vioscreen_m_fish_lo
0.286164375
vioscreen_m_frank
0.25153424
vioscreen_m_meat
1.611452035
vioscreen_m_mpf
2.569671213
vioscreen_m_nutsd
2.191068634
vioscreen_m_organ
0.0
vioscreen_m_poult
0.025561643999999998
vioscreen_m_soy
0.002
vioscreen_magnes
306.4697774
vioscreen_maltitol
0.0
vioscreen_maltose
0.759260287
vioscreen_mangan
3.0628213960000004
vioscreen_mannitol
0.14986302599999998
vioscreen_methhis3
9.676630726
vioscreen_methion
1.418520407
vioscreen_mfa141
0.126547941
vioscreen_mfa161
1.994054507
vioscreen_mfa181
40.90008562
vioscreen_mfa201
0.505205463
vioscreen_mfa221
0.090438362
vioscreen_mfatot
43.80358786
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.071864300000001
vioscreen_nccglbr
41.78018782
vioscreen_nccglgr
29.22627622
vioscreen_niacin
14.54090459
vioscreen_niacineq
25.78040989
vioscreen_nitrogen
10.05906932
vioscreen_non_fried_fish_servings
1.1953799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.10613696
vioscreen_oxalic
360.5952483
vioscreen_oxalicm
400.03364730000004
vioscreen_pantothe
6.392986141000001
vioscreen_pectins
5.3936995
vioscreen_pfa182
17.04440951
vioscreen_pfa183
1.857369702
vioscreen_pfa184
0.01679452
vioscreen_pfa204
0.19641096600000002
vioscreen_pfa205
0.060602742
vioscreen_pfa225
0.025534246
vioscreen_pfa226
0.146136976
vioscreen_pfatot
19.42657855
vioscreen_phenylal
2.7972876980000003
vioscreen_phosphor
1035.996918
vioscreen_phytic
476.9714897
vioscreen_pinitol
0.0009589039999999999
vioscreen_potass
2791.495548
vioscreen_procdate
10/28/15
vioscreen_proline
3.293370077
vioscreen_protanim
41.24917862
vioscreen_protein
61.67403146
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.42671099
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
256.0
vioscreen_retinol
342.3058861
vioscreen_rgrain
0.530328745
vioscreen_ribofla
1.747616619
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.38671
vioscreen_satoco
0.0
vioscreen_selenium
89.08233626
vioscreen_serine
3.236876605
vioscreen_sfa100
0.463369835
vioscreen_sfa120
0.5296712379999999
vioscreen_sfa140
2.138657661
vioscreen_sfa160
16.49383829
vioscreen_sfa170
0.127917825
vioscreen_sfa180
5.84156143
vioscreen_sfa200
0.264904116
vioscreen_sfa220
0.401287716
vioscreen_sfa40
0.542137
vioscreen_sfa60
0.302547925
vioscreen_sfa80
0.20197260600000003
vioscreen_sfatot
27.74797196
vioscreen_sodium
3435.540753
vioscreen_sorbitol
0.055260269
vioscreen_srvid
20253.0
vioscreen_starch
16.68367134
vioscreen_started
7/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.2978636
vioscreen_sweet_servings
0.16064
vioscreen_tagatose
0.523397284
vioscreen_tfa161t
0.061808222999999995
vioscreen_tfa181t
1.247945122
vioscreen_tfa182t
0.30556162
vioscreen_tgrain
0.596904096
vioscreen_thiamin
0.8102738890000001
vioscreen_threonin
2.421315149
vioscreen_time
20.0
vioscreen_totaltfa
1.621753264
vioscreen_totcla
0.11104109300000001
vioscreen_totfolat
412.71802230000003
vioscreen_totsugar
22.43551076
vioscreen_tryptoph
0.676684947
vioscreen_tyrosine
2.207315022
vioscreen_user_id
20253.0
vioscreen_v_drkgr
1.3941917940000002
vioscreen_v_orange
0.22156165100000003
vioscreen_v_other
0.903041056
vioscreen_v_potato
0.027479451000000002
vioscreen_v_starcy
0.006958904
vioscreen_v_tomato
0.338931525
vioscreen_v_total
2.8921640889999995
vioscreen_valine
3.1950954489999996
vioscreen_veg5_day
8.6
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
22657.73562
vioscreen_vita_rae
1418.168493
vioscreen_vita_re
2494.027911
vioscreen_vitb12
3.383151287
vioscreen_vitb6
1.664574861
vioscreen_vitc
113.04579409999998
vioscreen_vitd
6.001040775
vioscreen_vitd2
0.000191781
vioscreen_vitd3
6.0008769
vioscreen_vitd_iu
240.041631
vioscreen_vite_iu
20.98353355
vioscreen_vitk
797.5728596
vioscreen_water
4785.897603
vioscreen_weight
Not provided
vioscreen_wgrain
0.06657534
vioscreen_whole_grain_servings
0.01162
vioscreen_xylitol
0.02961644
vioscreen_zinc
8.902000615
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
72.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Rarely (less than once/week)