American Gut Project; 10317.000023094
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632630
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-09T19:41:19Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023094
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23094
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
21.62
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
02/05/2015
collection month
February
collection season
Winter
collection time
08:00
collection_timestamp
2015-02-05 08:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
Germany
country_residence
Not provided
csection
Not sure
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
2018.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Not sure
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
85a0b94e79f56af825e3ba64a2f756097edeab88a2b18e5d82cc782cce22d12124b52dd07d8c5ab49cc05fd5763476988e6418aeb7a83f26ae785f9cbabdb877
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.4
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
Yes
longitude
-105.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Yes
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000023094
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
767c6b6b36143d66
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.5689316
vioscreen_a_cal
230.10507280000002
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
5.744027585
vioscreen_addsugar
27.51046393
vioscreen_adsugtot
22.98454623
vioscreen_age
215.0
vioscreen_alanine
2.134273665
vioscreen_alcohol
22.25827269
vioscreen_alcohol_servings
1.56893
vioscreen_alphacar
726.983476
vioscreen_alphtoce
19.15679714
vioscreen_alphtoco
17.09065711
vioscreen_arginine
3.591643702
vioscreen_ash
20.07936911
vioscreen_aspartam
0.0
vioscreen_aspartic
4.822000415
vioscreen_avcarb
218.8985873
vioscreen_bcodeid
Not provided
vioscreen_betacar
5292.19589
vioscreen_betacryp
147.98472819999998
vioscreen_betaine
283.5736943
vioscreen_betatoco
0.729862997
vioscreen_biochana
0.011643836000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
189.62138269999997
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.06351
vioscreen_calcium_servings
2.102
vioscreen_calories
2064.889897
vioscreen_carbo
249.97960189999998
vioscreen_cholest
33.70090165
vioscreen_choline
242.11042379999998
vioscreen_clac9t11
0.00769863
vioscreen_clat10c12
0.005369863000000001
vioscreen_copper
1.951972857
vioscreen_coumest
0.264410965
vioscreen_cystine
0.75969857
vioscreen_d_cheese
0.053424658
vioscreen_d_milk
0.010082190999999999
vioscreen_d_tot_soym
0.063506845
vioscreen_d_total
0.063506845
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.117808219
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.867452041
vioscreen_discfat_oil
57.22331978
vioscreen_discfat_sol
11.20597308
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001178082
vioscreen_f_citmlb
0.42819176200000003
vioscreen_f_nj_citmlb
0.21309588699999998
vioscreen_f_nj_other
1.4976713
vioscreen_f_nj_total
1.71076727
vioscreen_f_other
1.640548079
vioscreen_f_total
2.068739967
vioscreen_fat
84.53370612
vioscreen_fiber
31.06180704
vioscreen_fibh2o
8.93583583
vioscreen_fibinso
22.24520682
vioscreen_finished
2/3/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
559.2006848999999
vioscreen_fol_nat
340.7990582
vioscreen_fol_syn
128.4740368
vioscreen_formontn
0.004246575
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.5
vioscreen_frtsumm
4.1
vioscreen_fructose
24.74594392
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
5.80405541
vioscreen_g_total
8.169588774
vioscreen_g_whl
2.365561624
vioscreen_galactos
0.202547946
vioscreen_gammtoco
13.72230308
vioscreen_gender
false
vioscreen_genistn
1.558164664
vioscreen_glac
115.0465218
vioscreen_gltc
126.13534890000001
vioscreen_glucose
20.05002809
vioscreen_glutamic
11.96106994
vioscreen_glycine
2.300082272
vioscreen_glycitn
0.300301392
vioscreen_grams
5377.684247
vioscreen_hei2010_dairy
0.2
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
6.0
vioscreen_hei2010_score
80.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.2
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
83.4
vioscreen_hei_sodium
5.7
vioscreen_hei_sol_fat_alc_add_sug
19.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
1.191232676
vioscreen_inositol
0.17967125899999997
vioscreen_iron
13.43898892
vioscreen_isoleuc
1.82238318
vioscreen_isomalt
0.0
vioscreen_joules
8639.499315000001
vioscreen_juice_servings
0.71595
vioscreen_lactitol
0.0
vioscreen_lactose
0.306109619
vioscreen_legumes
0.062438352999999995
vioscreen_leucine
3.461917741
vioscreen_line_gi
601.1070205
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
6593.582877000001
vioscreen_lycopene
2724.129452
vioscreen_lysine
1.95569851
vioscreen_m_egg
0.045863013
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.07367123099999999
vioscreen_m_mpf
0.153150689
vioscreen_m_nutsd
4.359068654
vioscreen_m_organ
0.0
vioscreen_m_poult
0.07947945299999999
vioscreen_m_soy
0.587397244
vioscreen_magnes
437.3011558
vioscreen_maltitol
0.0
vioscreen_maltose
4.767452041
vioscreen_mangan
5.283452951
vioscreen_mannitol
0.598684901
vioscreen_methhis3
0.665315058
vioscreen_methion
0.7730684459999999
vioscreen_mfa141
0.003780822
vioscreen_mfa161
0.45652043600000003
vioscreen_mfa181
42.79066781
vioscreen_mfa201
0.531534232
vioscreen_mfa221
0.00649315
vioscreen_mfatot
43.86476349
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
16.77651969
vioscreen_nccglbr
163.1923801
vioscreen_nccglgr
114.145762
vioscreen_niacin
24.69682149
vioscreen_niacineq
33.95174979
vioscreen_nitrogen
9.623943841
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.60369873
vioscreen_oxalic
351.292851
vioscreen_oxalicm
411.1297945
vioscreen_pantothe
4.763342452
vioscreen_pectins
4.262959854
vioscreen_pfa182
19.61567316
vioscreen_pfa183
1.5972880319999998
vioscreen_pfa184
0.0010136989999999999
vioscreen_pfa204
0.012356165
vioscreen_pfa205
0.002191781
vioscreen_pfa225
0.0007123289999999999
vioscreen_pfa226
0.002438356
vioscreen_pfatot
21.26358893
vioscreen_phenylal
2.3709586369999998
vioscreen_phosphor
1025.010959
vioscreen_phytic
1239.723459
vioscreen_pinitol
0.025013699
vioscreen_potass
2679.863699
vioscreen_procdate
10/28/15
vioscreen_proline
3.690657106
vioscreen_protanim
3.035424805
vioscreen_protein
56.493487800000004
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
53.4586098
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
574.0
vioscreen_retinol
140.8442209
vioscreen_rgrain
5.389780541
vioscreen_ribofla
1.489917828
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.41452
vioscreen_satoco
0.6980821999999999
vioscreen_selenium
119.26853600000001
vioscreen_serine
2.567123455
vioscreen_sfa100
0.07208219
vioscreen_sfa120
0.439342467
vioscreen_sfa140
0.397753405
vioscreen_sfa160
9.303971131
vioscreen_sfa170
0.018767124
vioscreen_sfa180
3.13413621
vioscreen_sfa200
0.458274026
vioscreen_sfa220
0.735150732
vioscreen_sfa40
0.026383562000000003
vioscreen_sfa60
0.01049315
vioscreen_sfa80
0.07334246700000001
vioscreen_sfatot
14.99967091
vioscreen_sodium
2809.618493
vioscreen_sorbitol
1.1974794990000002
vioscreen_srvid
17058.0
vioscreen_starch
108.0825449
vioscreen_started
2/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.94506903
vioscreen_sweet_servings
0.5
vioscreen_tagatose
0.063780824
vioscreen_tfa161t
0.005726028
vioscreen_tfa181t
1.358520842
vioscreen_tfa182t
0.20515069800000002
vioscreen_tgrain
8.298081657
vioscreen_thiamin
2.003835182
vioscreen_threonin
1.5538084269999999
vioscreen_time
31.0
vioscreen_totaltfa
1.711150705
vioscreen_totcla
0.013041097
vioscreen_totfolat
469.2730308
vioscreen_totsugar
75.2390411
vioscreen_tryptoph
0.555397264
vioscreen_tyrosine
1.530931614
vioscreen_user_id
17058.0
vioscreen_v_drkgr
0.508054801
vioscreen_v_orange
0.133315068
vioscreen_v_other
0.986246689
vioscreen_v_potato
0.202219171
vioscreen_v_starcy
0.329945206
vioscreen_v_tomato
0.256465755
vioscreen_v_total
2.416301069
vioscreen_valine
2.201671527
vioscreen_veg5_day
4.7
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.8
vioscreen_visit
1.0
vioscreen_vita_iu
10017.96507
vioscreen_vita_rae
618.3182363
vioscreen_vita_re
1095.79161
vioscreen_vitb12
0.576328727
vioscreen_vitb6
1.8123289340000002
vioscreen_vitc
144.0005565
vioscreen_vitd
0.189150667
vioscreen_vitd2
0.0019178079999999998
vioscreen_vitd3
0.187232867
vioscreen_vitd_iu
7.566026661
vioscreen_vite_iu
25.71085188
vioscreen_vitk
290.5152397
vioscreen_water
4958.763356
vioscreen_weight
Not provided
vioscreen_wgrain
2.90832854
vioscreen_whole_grain_servings
2.36556
vioscreen_xylitol
0.026000005
vioscreen_zinc
7.949123769
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
70.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily