American Gut Project; 10317.000022968
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632591
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:30Z
INSDC last update
2017-08-09T19:41:13Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022968
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
true
allergic_to_shellfish
true
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22968
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
31.75
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I don't know, I do not have a point of reference
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Not provided
collection date
2015-01-21
collection month
January
collection season
Winter
collection time
10:00
collection_timestamp
2015-01-21 10:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
Not sure
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
57.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Not provided
fed_as_infant
Not sure
fermented_plant_frequency
Not provided
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
7810c9894bdfbda54165429484441e476e749d59311d12813109637cab1521ce1cb1fc1527d466b4cc7bdf34661704064368d5393cf10ba81b6ac3d58e19b2b5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Never
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Not provided
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000022968
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
5389dce58b0a8a1f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
24.58284996
vioscreen_addsugar
119.72537460000001
vioscreen_adsugtot
102.572271
vioscreen_age
215.0
vioscreen_alanine
6.694547302999999
vioscreen_alcohol
0.09227397300000001
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
867.4140411000001
vioscreen_alphtoce
29.82955908
vioscreen_alphtoco
25.90594499
vioscreen_arginine
9.221917807999999
vioscreen_ash
34.66202911
vioscreen_aspartam
242.95721319999998
vioscreen_aspartic
14.53898491
vioscreen_avcarb
389.76464039999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
4689.405479
vioscreen_betacryp
50.49356807
vioscreen_betaine
217.15909669999996
vioscreen_betatoco
1.398246535
vioscreen_biochana
0.009369863
vioscreen_bmi
Not provided
vioscreen_caffeine
190.4873716
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
800.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
6.05679
vioscreen_calcium_servings
8.31551
vioscreen_calories
4106.689041
vioscreen_carbo
428.2266695
vioscreen_cholest
453.6041096
vioscreen_choline
647.9282106
vioscreen_clac9t11
0.24906848199999998
vioscreen_clat10c12
0.049095890999999996
vioscreen_copper
2.7525755160000003
vioscreen_coumest
0.103616438
vioscreen_cystine
1.8246023519999999
vioscreen_d_cheese
1.656849315
vioscreen_d_milk
4.023561911
vioscreen_d_tot_soym
6.0567944670000005
vioscreen_d_total
6.0567944670000005
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.111534244
vioscreen_database
NDSR - V44
vioscreen_delttoco
6.649151193
vioscreen_discfat_oil
66.76095355
vioscreen_discfat_sol
90.57263485
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001041096
vioscreen_f_citmlb
0.230958912
vioscreen_f_nj_citmlb
0.22624658
vioscreen_f_nj_other
0.9421369159999999
vioscreen_f_nj_total
1.168410879
vioscreen_f_other
0.9421369159999999
vioscreen_f_total
1.173123294
vioscreen_fat
206.20742719999998
vioscreen_fiber
38.42714309
vioscreen_fibh2o
9.889370184
vioscreen_fibinso
28.60360927
vioscreen_finished
1/21/15
vioscreen_fish_servings
0.35404
vioscreen_fol_deqv
704.5453339
vioscreen_fol_nat
425.73604450000005
vioscreen_fol_syn
163.8483733
vioscreen_formontn
0.00660274
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.3799
vioscreen_frt5_day
1.0
vioscreen_frtsumm
2.3
vioscreen_fructose
18.33057711
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
6.578466128
vioscreen_g_total
10.46147996
vioscreen_g_whl
3.8829864080000003
vioscreen_galactos
0.8899451690000001
vioscreen_gammtoco
32.96199433
vioscreen_gender
false
vioscreen_genistn
0.09443837
vioscreen_glac
189.82474319999997
vioscreen_gltc
205.2488228
vioscreen_glucose
21.650573899999998
vioscreen_glutamic
33.78027344
vioscreen_glycine
6.342275122999999
vioscreen_glycitn
0.007369863000000001
vioscreen_grams
3844.225342
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
13.0
vioscreen_hei2010_fatty_acids
4.5
vioscreen_hei2010_fruit
1.8
vioscreen_hei2010_greens_beans
1.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
70.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
7.8
vioscreen_hei2010_veg
2.5
vioscreen_hei2010_whole_fruit
3.6
vioscreen_hei2010_whole_grains
6.3
vioscreen_hei_drk_g_org_veg_leg
1.2
vioscreen_hei_fruit
1.8
vioscreen_hei_grains
4.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
3.6
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
66.1
vioscreen_hei_sodium
6.2
vioscreen_hei_sol_fat_alc_add_sug
13.4
vioscreen_hei_veg
2.5
vioscreen_hei_whl_grains
3.2
vioscreen_height
Not provided
vioscreen_histidin
4.320575369
vioscreen_inositol
0.05268493
vioscreen_iron
20.7359977
vioscreen_isoleuc
7.057094792999999
vioscreen_isomalt
0.0
vioscreen_joules
17182.38493
vioscreen_juice_servings
0.00945
vioscreen_lactitol
0.0
vioscreen_lactose
63.77534247
vioscreen_legumes
0.079972604
vioscreen_leucine
12.68240984
vioscreen_line_gi
940.4918663999999
vioscreen_low_fat_dairy_serving
3.48699
vioscreen_lutzeax
1963.9051370000002
vioscreen_lycopene
6964.485616
vioscreen_lysine
9.859617134
vioscreen_m_egg
0.6970411329999999
vioscreen_m_fish_hi
0.156191776
vioscreen_m_fish_lo
0.045589039000000005
vioscreen_m_frank
0.09830136199999999
vioscreen_m_meat
2.405479285
vioscreen_m_mpf
3.8933704110000003
vioscreen_m_nutsd
8.81734268
vioscreen_m_organ
0.0
vioscreen_m_poult
1.18786295
vioscreen_m_soy
0.000438356
vioscreen_magnes
742.7093322000001
vioscreen_maltitol
0.0
vioscreen_maltose
5.484054942
vioscreen_mangan
7.993807524
vioscreen_mannitol
0.3925479
vioscreen_methhis3
16.68419173
vioscreen_methion
3.427780862
vioscreen_mfa141
0.23169865
vioscreen_mfa161
2.210300895
vioscreen_mfa181
71.83634953
vioscreen_mfa201
0.9327945240000001
vioscreen_mfa221
0.041616437
vioscreen_mfatot
75.80424872
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
25.90594499
vioscreen_nccglbr
288.41740150000004
vioscreen_nccglgr
201.75509419999997
vioscreen_niacin
42.07336259
vioscreen_niacineq
72.6473673
vioscreen_nitrogen
26.72964202
vioscreen_non_fried_fish_servings
0.35404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.0391233680000003
vioscreen_oxalic
433.82208899999995
vioscreen_oxalicm
504.20385269999997
vioscreen_pantothe
11.39706764
vioscreen_pectins
5.079206242
vioscreen_pfa182
43.86279431
vioscreen_pfa183
2.897725813
vioscreen_pfa184
0.009534247
vioscreen_pfa204
0.152657527
vioscreen_pfa205
0.03380822
vioscreen_pfa225
0.028054793999999997
vioscreen_pfa226
0.071260275
vioscreen_pfatot
47.15723459
vioscreen_phenylal
7.5432603810000005
vioscreen_phosphor
3198.843836
vioscreen_phytic
1839.038185
vioscreen_pinitol
0.008575343000000001
vioscreen_potass
5489.301027
vioscreen_procdate
10/28/15
vioscreen_proline
12.11085055
vioscreen_protanim
96.89233733
vioscreen_protein
161.33564850000002
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
64.43621575
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
604.0
vioscreen_retinol
1020.2230310000001
vioscreen_rgrain
6.1214241760000005
vioscreen_ribofla
4.339014006
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.04825
vioscreen_satoco
0.0
vioscreen_selenium
272.5138485
vioscreen_serine
8.30701319
vioscreen_sfa100
1.538383588
vioscreen_sfa120
2.808109482
vioscreen_sfa140
6.721780688
vioscreen_sfa160
34.913123399999996
vioscreen_sfa170
0.248356169
vioscreen_sfa180
15.44446838
vioscreen_sfa200
0.772629997
vioscreen_sfa220
1.421589054
vioscreen_sfa40
1.7710957569999999
vioscreen_sfa60
0.963753395
vioscreen_sfa80
0.796274013
vioscreen_sfatot
68.75936965
vioscreen_sodium
5342.515411
vioscreen_sorbitol
0.587041149
vioscreen_srvid
16950.0
vioscreen_starch
160.3975492
vioscreen_started
1/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
95.95310359999999
vioscreen_sweet_servings
3.98904
vioscreen_tagatose
6.421534541000001
vioscreen_tfa161t
0.088876719
vioscreen_tfa181t
3.6370133910000004
vioscreen_tfa182t
0.9062739120000001
vioscreen_tgrain
10.97649227
vioscreen_thiamin
2.595040601
vioscreen_threonin
5.867972094
vioscreen_time
47.0
vioscreen_totaltfa
4.731424912
vioscreen_totcla
0.30052057600000004
vioscreen_totfolat
589.584161
vioscreen_totsugar
205.9243793
vioscreen_tryptoph
1.835780815
vioscreen_tyrosine
6.0696703770000004
vioscreen_user_id
16950.0
vioscreen_v_drkgr
0.080849321
vioscreen_v_orange
0.241287712
vioscreen_v_other
0.524630194
vioscreen_v_potato
0.7311506720000001
vioscreen_v_starcy
0.156164394
vioscreen_v_tomato
0.453369851
vioscreen_v_total
2.187424584
vioscreen_valine
8.399918397
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
4.4
vioscreen_visit
1.0
vioscreen_vita_iu
11979.52055
vioscreen_vita_rae
1449.254623
vioscreen_vita_re
1878.2821920000001
vioscreen_vitb12
9.322575316
vioscreen_vitb6
3.0896711789999998
vioscreen_vitc
67.90669414
vioscreen_vitd
14.04345168
vioscreen_vitd2
0.002054795
vioscreen_vitd3
14.04145173
vioscreen_vitd_iu
561.7380672
vioscreen_vite_iu
38.61616545
vioscreen_vitk
134.6753639
vioscreen_water
3072.209247
vioscreen_weight
Not provided
vioscreen_wgrain
4.855096185
vioscreen_whole_grain_servings
3.88299
vioscreen_xylitol
0.016164384
vioscreen_zinc
23.20270494
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
83.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)