American Gut Project; 10317.000022057
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632981
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-05T17:27:10Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022057
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
56.0
age_corrected
56.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22057
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1959.0
bmi
25.81
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-04-22
collection month
April
collection season
Spring
collection time
08:15
collection_timestamp
2015-04-22 08:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
Australia
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Not provided
elevation
37.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
Australia
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
155.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
fde88f712464ea003587aa48d77a487d5bb8f64c8915cbfc0e660de145c64b39f0152c6a7a562d596ebb6f90b3f23cda5533da07e663b8c9c6ae66fc06240010
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
-30.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
153.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000022057
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NSW
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
97b0233975229a93
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.579452055
vioscreen_a_cal
393.8689212
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.143150685
vioscreen_addsugar
46.78731807
vioscreen_adsugtot
29.41778146
vioscreen_age
215.0
vioscreen_alanine
3.742876779
vioscreen_alcohol
52.76616545
vioscreen_alcohol_servings
3.57945
vioscreen_alphacar
2489.9195210000003
vioscreen_alphtoce
7.142767417999999
vioscreen_alphtoco
6.572301744
vioscreen_arginine
4.087424751
vioscreen_ash
16.46030207
vioscreen_aspartam
0.0
vioscreen_aspartic
6.9038634420000005
vioscreen_avcarb
166.568964
vioscreen_bcodeid
Not provided
vioscreen_betacar
10308.728079999999
vioscreen_betacryp
37.72670965
vioscreen_betaine
51.99605094
vioscreen_betatoco
0.129095887
vioscreen_biochana
0.0076164380000000005
vioscreen_bmi
Not provided
vioscreen_caffeine
122.33881640000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.0550700000000002
vioscreen_calcium_servings
4.22803
vioscreen_calories
1726.353425
vioscreen_carbo
187.3554366
vioscreen_cholest
145.57142549999998
vioscreen_choline
289.7147688
vioscreen_clac9t11
0.04687671400000001
vioscreen_clat10c12
0.011753425
vioscreen_copper
1.252027287
vioscreen_coumest
0.066849319
vioscreen_cystine
0.8222739020000001
vioscreen_d_cheese
0.08808218599999999
vioscreen_d_milk
0.905616405
vioscreen_d_tot_soym
1.05506851
vioscreen_d_total
1.05506851
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.10060274300000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.8318904509999999
vioscreen_discfat_oil
15.67868552
vioscreen_discfat_sol
8.648959225
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001452055
vioscreen_f_citmlb
0.315397268
vioscreen_f_nj_citmlb
0.307589053
vioscreen_f_nj_other
1.513616525
vioscreen_f_nj_total
1.8212054530000001
vioscreen_f_other
1.513616525
vioscreen_f_total
1.829013605
vioscreen_fat
39.7755351
vioscreen_fiber
20.78731673
vioscreen_fibh2o
5.02186296
vioscreen_fibinso
15.80082005
vioscreen_finished
4/11/15
vioscreen_fish_servings
3.07365
vioscreen_fol_deqv
488.04708899999997
vioscreen_fol_nat
201.97572769999996
vioscreen_fol_syn
168.2689533
vioscreen_formontn
0.001068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.7
vioscreen_fructose
16.40514635
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.5817534560000001
vioscreen_g_total
3.8124658869999997
vioscreen_g_whl
3.2307122219999997
vioscreen_galactos
0.213835625
vioscreen_gammtoco
5.120190764
vioscreen_gender
false
vioscreen_genistn
0.109698633
vioscreen_glac
93.571372
vioscreen_gltc
103.4754816
vioscreen_glucose
15.38282588
vioscreen_glutamic
12.12712436
vioscreen_glycine
3.229205908
vioscreen_glycitn
0.017260274
vioscreen_grams
4231.607192
vioscreen_hei2010_dairy
4.7
vioscreen_hei2010_empty_calories
18.5
vioscreen_hei2010_fatty_acids
9.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
90.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
8.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.6
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
80.8
vioscreen_hei_sodium
6.7
vioscreen_hei_sol_fat_alc_add_sug
13.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.079561751
vioscreen_inositol
0.167972607
vioscreen_iron
15.95268622
vioscreen_isoleuc
3.1948486330000003
vioscreen_isomalt
0.0
vioscreen_joules
7223.061643999999
vioscreen_juice_servings
0.01567
vioscreen_lactitol
0.0
vioscreen_lactose
11.98106807
vioscreen_legumes
0.049315068
vioscreen_leucine
5.480876766000001
vioscreen_line_gi
499.1760274
vioscreen_low_fat_dairy_serving
0.06268
vioscreen_lutzeax
4541.6513700000005
vioscreen_lycopene
2930.217466
vioscreen_lysine
5.394274066
vioscreen_m_egg
0.023095891
vioscreen_m_fish_hi
1.127123355
vioscreen_m_fish_lo
0.624520581
vioscreen_m_frank
0.063342468
vioscreen_m_meat
2.418246669
vioscreen_m_mpf
5.3487672569999996
vioscreen_m_nutsd
0.08753424900000001
vioscreen_m_organ
0.0
vioscreen_m_poult
1.1156712359999998
vioscreen_m_soy
0.002821918
vioscreen_magnes
381.41648119999996
vioscreen_maltitol
0.0
vioscreen_maltose
15.02271244
vioscreen_mangan
3.678219312
vioscreen_mannitol
0.595534317
vioscreen_methhis3
20.55093108
vioscreen_methion
1.7130685469999998
vioscreen_mfa141
0.075534246
vioscreen_mfa161
0.61060281
vioscreen_mfa181
12.76654805
vioscreen_mfa201
0.316137006
vioscreen_mfa221
0.188054814
vioscreen_mfatot
14.03125803
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
6.572301744
vioscreen_nccglbr
156.0452483
vioscreen_nccglgr
109.1461259
vioscreen_niacin
27.18857556
vioscreen_niacineq
39.73819028
vioscreen_nitrogen
11.38342519
vioscreen_non_fried_fish_servings
3.07365
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.9979729640000001
vioscreen_oxalic
193.6117723
vioscreen_oxalicm
184.3045591
vioscreen_pantothe
4.303945714
vioscreen_pectins
3.770355977
vioscreen_pfa182
9.490659113
vioscreen_pfa183
1.442109576
vioscreen_pfa184
0.04249315099999999
vioscreen_pfa204
0.100328775
vioscreen_pfa205
0.14230136599999998
vioscreen_pfa225
0.065863011
vioscreen_pfa226
0.306465755
vioscreen_pfatot
11.65405474
vioscreen_phenylal
2.993643648
vioscreen_phosphor
1293.068322
vioscreen_phytic
441.2817637
vioscreen_pinitol
0.001808219
vioscreen_potass
3250.644178
vioscreen_procdate
10/28/15
vioscreen_proline
3.6107398460000004
vioscreen_protanim
52.83317637
vioscreen_protein
71.06222175
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
18.23032962
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
486.0
vioscreen_retinol
591.4035102999999
vioscreen_rgrain
0.8046301440000001
vioscreen_ribofla
1.812438129
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.04345
vioscreen_satoco
0.0
vioscreen_selenium
92.43395762
vioscreen_serine
3.06180838
vioscreen_sfa100
0.193561648
vioscreen_sfa120
0.429424673
vioscreen_sfa140
0.9068767390000001
vioscreen_sfa160
5.931342974
vioscreen_sfa170
0.046767128
vioscreen_sfa180
2.4039726359999998
vioscreen_sfa200
0.08986302199999999
vioscreen_sfa220
0.069397255
vioscreen_sfa40
0.206849315
vioscreen_sfa60
0.110027397
vioscreen_sfa80
0.10090410400000001
vioscreen_sfatot
10.65479519
vioscreen_sodium
2148.694349
vioscreen_sorbitol
0.7590138890000001
vioscreen_srvid
18484.0
vioscreen_starch
54.29522688
vioscreen_started
4/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
19.49608305
vioscreen_sweet_servings
0.01095
vioscreen_tagatose
0.7319725559999999
vioscreen_tfa161t
0.020575342
vioscreen_tfa181t
0.504821903
vioscreen_tfa182t
0.145041103
vioscreen_tgrain
2.4713424059999998
vioscreen_thiamin
1.12493144
vioscreen_threonin
2.898027143
vioscreen_time
30.0
vioscreen_totaltfa
0.6751780890000001
vioscreen_totcla
0.061150689
vioscreen_totfolat
370.24464900000004
vioscreen_totsugar
78.60536708
vioscreen_tryptoph
0.752630197
vioscreen_tyrosine
2.4053147409999998
vioscreen_user_id
18484.0
vioscreen_v_drkgr
0.45468490799999994
vioscreen_v_orange
0.5846575589999999
vioscreen_v_other
0.804630227
vioscreen_v_potato
0.29252053899999997
vioscreen_v_starcy
0.118684931
vioscreen_v_tomato
0.383342461
vioscreen_v_total
2.638520708
vioscreen_valine
3.6649587969999997
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
5.3
vioscreen_visit
1.0
vioscreen_vita_iu
21259.39041
vioscreen_vita_rae
1555.78339
vioscreen_vita_re
2520.1625
vioscreen_vitb12
7.67873903
vioscreen_vitb6
2.56246572
vioscreen_vitc
82.00156785
vioscreen_vitd
14.04424497
vioscreen_vitd2
3.522822132
vioscreen_vitd3
10.52139675
vioscreen_vitd_iu
561.7697988
vioscreen_vite_iu
9.786302708
vioscreen_vitk
210.4958476
vioscreen_water
3869.5198630000004
vioscreen_weight
Not provided
vioscreen_wgrain
1.6667398530000002
vioscreen_whole_grain_servings
3.2307099999999997
vioscreen_xylitol
0.06345205400000001
vioscreen_zinc
11.58485124
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Rarely (less than once/week)