American Gut Project; 10317.000021184
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632445
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-09T19:40:50Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021184
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
52.0
age_corrected
52.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21184
antibiotic_history
Not provided
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1963.0
bmi
20.94
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-20
collection month
March
collection season
Spring
collection time
21:00
collection_timestamp
2015-03-20 21:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
Not provided
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
New England
elevation
65.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Not provided
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Not provided
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
614b81cf280246bc8f226afbecba6fdb952cabcc154e2ae5e6f7d2a9311e80e9c9ff281db71f360c27ac8b5da3829349e786bbd577385e2d03cc79268cfb5517
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-71.5
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Not provided
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Not provided
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000021184
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
d32fd034f9e07f87
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.747123238
vioscreen_a_cal
93.73509204
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
7.062192316
vioscreen_addsugar
31.63331817
vioscreen_adsugtot
28.78369542
vioscreen_age
215.0
vioscreen_alanine
2.811287323
vioscreen_alcohol
11.42799925
vioscreen_alcohol_servings
0.74712
vioscreen_alphacar
1722.1941780000002
vioscreen_alphtoce
7.331917541
vioscreen_alphtoco
6.617780126
vioscreen_arginine
3.239314667
vioscreen_ash
17.664112
vioscreen_aspartam
10.70342466
vioscreen_aspartic
5.4500826060000005
vioscreen_avcarb
167.03301580000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
7708.546575
vioscreen_betacryp
393.14434930000004
vioscreen_betaine
57.70481593
vioscreen_betatoco
0.11347943699999999
vioscreen_biochana
0.014904111000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
40.84904217
vioscreen_calcium
true
vioscreen_calcium_avg
285.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
4
vioscreen_calcium_from_dairy_servings
1.26016
vioscreen_calcium_servings
2.75734
vioscreen_calories
1546.500514
vioscreen_carbo
188.09145980000002
vioscreen_cholest
302.8132705
vioscreen_choline
390.2471318
vioscreen_clac9t11
0.101479465
vioscreen_clat10c12
0.021287672
vioscreen_copper
1.078794547
vioscreen_coumest
0.0069863009999999994
vioscreen_cystine
0.706794467
vioscreen_d_cheese
0.14147945
vioscreen_d_milk
0.36830135
vioscreen_d_tot_soym
1.2601644440000002
vioscreen_d_total
1.2601644440000002
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
0.319862993
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.945616589
vioscreen_discfat_oil
18.494657
vioscreen_discfat_sol
26.60818975
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00030137
vioscreen_f_citmlb
1.7553424990000002
vioscreen_f_nj_citmlb
0.252712302
vioscreen_f_nj_other
0.566356168
vioscreen_f_nj_total
0.81909581
vioscreen_f_other
0.566356168
vioscreen_f_total
2.321726175
vioscreen_fat
57.07279538
vioscreen_fiber
21.05843991
vioscreen_fibh2o
5.267561403
vioscreen_fibinso
16.00759177
vioscreen_finished
1/5/15
vioscreen_fish_servings
0.57731
vioscreen_fol_deqv
492.4705051
vioscreen_fol_nat
418.2340325
vioscreen_fol_syn
43.66632866
vioscreen_formontn
0.004164383
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.6
vioscreen_fructose
26.4572881
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.271342489
vioscreen_g_total
1.848246702
vioscreen_g_whl
0.57693147
vioscreen_galactos
1.070356144
vioscreen_gammtoco
6.590876497999999
vioscreen_gender
false
vioscreen_genistn
0.434410869
vioscreen_glac
75.11461366
vioscreen_gltc
83.12977847
vioscreen_glucose
30.18977954
vioscreen_glutamic
9.867671768
vioscreen_glycine
2.250712188
vioscreen_glycitn
0.07002739599999999
vioscreen_grams
2671.090925
vioscreen_hei2010_dairy
6.3
vioscreen_hei2010_empty_calories
17.3
vioscreen_hei2010_fatty_acids
3.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.6
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.5
vioscreen_hei2010_sea_foods_plant_protiens
2.8
vioscreen_hei2010_sodium
1.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.0
vioscreen_hei_meat_beans
9.3
vioscreen_hei_milk
6.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
5.2
vioscreen_hei_score
68.7
vioscreen_hei_sodium
0.8
vioscreen_hei_sol_fat_alc_add_sug
13.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.2
vioscreen_height
Not provided
vioscreen_histidin
1.5096711459999999
vioscreen_inositol
0.730520504
vioscreen_iron
9.774985954
vioscreen_isoleuc
2.706137127
vioscreen_isomalt
0.0
vioscreen_joules
6470.556164
vioscreen_juice_servings
3.00532
vioscreen_lactitol
0.0
vioscreen_lactose
16.55668343
vioscreen_legumes
0.062273971
vioscreen_leucine
4.515177186
vioscreen_line_gi
395.0261986
vioscreen_low_fat_dairy_serving
0.8617
vioscreen_lutzeax
7502.489726000001
vioscreen_lycopene
1333.459161
vioscreen_lysine
4.1475351830000005
vioscreen_m_egg
1.0038082590000001
vioscreen_m_fish_hi
0.328958903
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.018273973
vioscreen_m_meat
0.633835591
vioscreen_m_mpf
2.215917802
vioscreen_m_nutsd
0.119780825
vioscreen_m_organ
0.0
vioscreen_m_poult
1.234849318
vioscreen_m_soy
0.00339726
vioscreen_magnes
289.96776539999996
vioscreen_maltitol
0.0
vioscreen_maltose
1.638739599
vioscreen_mangan
2.7480544
vioscreen_mannitol
0.131972598
vioscreen_methhis3
8.970656304
vioscreen_methion
1.366136692
vioscreen_mfa141
0.048136991
vioscreen_mfa161
0.981753498
vioscreen_mfa181
21.89802681
vioscreen_mfa201
0.229753426
vioscreen_mfa221
0.069671234
vioscreen_mfatot
23.36799551
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
6.617780126
vioscreen_nccglbr
116.14495929999998
vioscreen_nccglgr
81.23350813
vioscreen_niacin
13.43964576
vioscreen_niacineq
23.0382973
vioscreen_nitrogen
9.439589576
vioscreen_non_fried_fish_servings
0.57731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.41290417
vioscreen_oxalic
147.5065925
vioscreen_oxalicm
144.8413206
vioscreen_pantothe
4.8981371739999995
vioscreen_pectins
4.6913687930000005
vioscreen_pfa182
7.024823416
vioscreen_pfa183
1.198492933
vioscreen_pfa184
0.014493151000000001
vioscreen_pfa204
0.142164382
vioscreen_pfa205
0.051068490999999994
vioscreen_pfa225
0.027534247
vioscreen_pfa226
0.121753421
vioscreen_pfatot
8.625670216
vioscreen_phenylal
2.583561477
vioscreen_phosphor
1034.821147
vioscreen_phytic
340.04490580000004
vioscreen_pinitol
0.003671233
vioscreen_potass
3093.411301
vioscreen_procdate
10/28/15
vioscreen_proline
3.698986315
vioscreen_protanim
38.16802761
vioscreen_protein
58.93372753
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
20.75216449
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
655.0
vioscreen_retinol
293.6949486
vioscreen_rgrain
1.279808233
vioscreen_ribofla
1.624273932
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.92671
vioscreen_satoco
0.0
vioscreen_selenium
68.80604131
vioscreen_serine
2.8245214169999997
vioscreen_sfa100
0.532274011
vioscreen_sfa120
0.659643764
vioscreen_sfa140
1.9766576480000002
vioscreen_sfa160
10.78695821
vioscreen_sfa170
0.111150695
vioscreen_sfa180
4.491863428
vioscreen_sfa200
0.116328775
vioscreen_sfa220
0.057726032000000004
vioscreen_sfa40
0.646109594
vioscreen_sfa60
0.384630177
vioscreen_sfa80
0.260876695
vioscreen_sfatot
20.20189159
vioscreen_sodium
2958.157877
vioscreen_sorbitol
0.37791777299999996
vioscreen_srvid
16767.0
vioscreen_starch
38.64236141
vioscreen_started
1/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
39.05495773
vioscreen_sweet_servings
0.5396
vioscreen_tagatose
6.310630485
vioscreen_tfa161t
0.024931505
vioscreen_tfa181t
1.169835673
vioscreen_tfa182t
0.23638351600000002
vioscreen_tgrain
1.85526006
vioscreen_thiamin
1.205150615
vioscreen_threonin
2.323972436
vioscreen_time
61.0
vioscreen_totaltfa
1.4537259869999999
vioscreen_totcla
0.12375343
vioscreen_totfolat
461.90034249999997
vioscreen_totsugar
115.75720249999999
vioscreen_tryptoph
0.577369878
vioscreen_tyrosine
2.04306858
vioscreen_user_id
16767.0
vioscreen_v_drkgr
0.47863012899999996
vioscreen_v_orange
0.36454798
vioscreen_v_other
1.22627413
vioscreen_v_potato
0.087808228
vioscreen_v_starcy
0.691780864
vioscreen_v_tomato
0.074602733
vioscreen_v_total
2.923671273
vioscreen_valine
3.2315068489999996
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.8
vioscreen_visit
1.0
vioscreen_vita_iu
15588.72329
vioscreen_vita_rae
1024.213099
vioscreen_vita_re
1754.731678
vioscreen_vitb12
3.174658203
vioscreen_vitb6
1.5701096630000002
vioscreen_vitc
224.3116224
vioscreen_vitd
3.997890692
vioscreen_vitd2
0.0
vioscreen_vitd3
3.997890692
vioscreen_vitd_iu
159.9156277
vioscreen_vite_iu
9.86410999
vioscreen_vitk
247.4506635
vioscreen_water
2354.488699
vioscreen_weight
Not provided
vioscreen_wgrain
0.575451995
vioscreen_whole_grain_servings
0.57693
vioscreen_xylitol
0.028410964
vioscreen_zinc
8.514821677
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
55.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)