American Gut Project; 10317.000029563
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634063
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029563
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
66.0
age_corrected
66.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29563
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1949.0
bmi
20.2
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
12/08/2015
collection month
December
collection season
Winter
collection time
07:15
collection_timestamp
2015-12-08 07:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
true
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
81.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
b9fc2251b26c55715f26c5dfcf784e820961f63f2682dc6ae6d4900b09bbd55c72ab70e1325ed631d64b4e203391c25836c5733e5ffdc934e6f3b4498d209372
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
56.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-3.7
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Not provided
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Not sure
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029563
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
Self-diagnosed
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
3663dfb28c02ec36
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.681671226
vioscreen_a_cal
84.00964255
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.315861782999999
vioscreen_addsugar
43.83849262
vioscreen_adsugtot
40.88383722
vioscreen_age
215.0
vioscreen_alanine
3.61745271
vioscreen_alcohol
10.50586339
vioscreen_alcohol_servings
0.68167
vioscreen_alphacar
2552.83476
vioscreen_alphtoce
13.94301557
vioscreen_alphtoco
12.94142498
vioscreen_arginine
4.677342412
vioscreen_ash
21.602519
vioscreen_aspartam
0.0
vioscreen_aspartic
8.517234321
vioscreen_avcarb
235.11346319999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
11876.26027
vioscreen_betacryp
551.2140411
vioscreen_betaine
122.6140304
vioscreen_betatoco
0.42189042600000004
vioscreen_biochana
0.01320548
vioscreen_bmi
Not provided
vioscreen_caffeine
426.5462757
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.98863
vioscreen_calcium_servings
3.8830699999999996
vioscreen_calories
1994.1806510000001
vioscreen_carbo
274.711708
vioscreen_cholest
292.78668660000005
vioscreen_choline
443.4583904
vioscreen_clac9t11
0.069972605
vioscreen_clat10c12
0.01290411
vioscreen_copper
1.9582191780000002
vioscreen_coumest
0.005726027
vioscreen_cystine
1.13630137
vioscreen_d_cheese
0.75386294
vioscreen_d_milk
0.451452051
vioscreen_d_tot_soym
1.98863007
vioscreen_d_total
1.98863007
vioscreen_d_yogurt
0.7832603140000001
vioscreen_daidzein
2.273945346
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.603890531
vioscreen_discfat_oil
21.95747806
vioscreen_discfat_sol
24.51249465
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001835616
vioscreen_f_citmlb
1.444575229
vioscreen_f_nj_citmlb
1.4414794919999998
vioscreen_f_nj_other
2.2788766519999997
vioscreen_f_nj_total
3.7203834010000003
vioscreen_f_other
2.2788766519999997
vioscreen_f_total
3.723479639
vioscreen_fat
63.92427226
vioscreen_fiber
39.59944884
vioscreen_fibh2o
10.81161775
vioscreen_fibinso
28.81081978
vioscreen_finished
8/10/15
vioscreen_fish_servings
1.8048099999999998
vioscreen_fol_deqv
539.3731164
vioscreen_fol_nat
519.0860445000001
vioscreen_fol_syn
11.91747913
vioscreen_formontn
0.004328767
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.03288
vioscreen_frt5_day
5.0
vioscreen_frtsumm
7.4
vioscreen_fructose
37.75912885
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
0.493890381
vioscreen_g_total
4.146109803
vioscreen_g_whl
3.652246763
vioscreen_galactos
1.147945205
vioscreen_gammtoco
8.185342197999999
vioscreen_gender
false
vioscreen_genistn
3.286055223
vioscreen_glac
92.62334118
vioscreen_gltc
106.20201200000001
vioscreen_glucose
33.83656892
vioscreen_glutamic
16.09731646
vioscreen_glycine
3.080986127
vioscreen_glycitn
0.5472602320000001
vioscreen_grams
4849.353082
vioscreen_hei2010_dairy
7.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
5.3
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
3.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
7.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.2
vioscreen_hei_sat_fat
8.7
vioscreen_hei_score
85.1
vioscreen_hei_sodium
3.1
vioscreen_hei_sol_fat_alc_add_sug
17.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.0522467630000003
vioscreen_inositol
0.260602726
vioscreen_iron
14.04339549
vioscreen_isoleuc
3.6752053460000003
vioscreen_isomalt
0.0
vioscreen_joules
8343.644521
vioscreen_juice_servings
0.006220000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
18.40282133
vioscreen_legumes
0.179671217
vioscreen_leucine
6.408411146000001
vioscreen_line_gi
509.02880989999994
vioscreen_low_fat_dairy_serving
1.0629899999999999
vioscreen_lutzeax
8386.134247
vioscreen_lycopene
5596.978082
vioscreen_lysine
5.3798089010000005
vioscreen_m_egg
1.058739733
vioscreen_m_fish_hi
0.44342467399999996
vioscreen_m_fish_lo
0.585068502
vioscreen_m_frank
0.039589041
vioscreen_m_meat
0.36301369899999997
vioscreen_m_mpf
1.585123308
vioscreen_m_nutsd
1.71567132
vioscreen_m_organ
0.0
vioscreen_m_poult
0.154082186
vioscreen_m_soy
0.850739696
vioscreen_magnes
506.33424660000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.0123286
vioscreen_mangan
10.65394505
vioscreen_mannitol
1.107451975
vioscreen_methhis3
5.09167146
vioscreen_methion
1.728164464
vioscreen_mfa141
0.078164391
vioscreen_mfa161
0.779589008
vioscreen_mfa181
22.06150738
vioscreen_mfa201
0.320739725
vioscreen_mfa221
0.071397259
vioscreen_mfatot
23.48950931
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
12.94142498
vioscreen_nccglbr
156.9728489
vioscreen_nccglgr
109.79189850000002
vioscreen_niacin
16.82544815
vioscreen_niacineq
32.35249625
vioscreen_nitrogen
13.47076868
vioscreen_non_fried_fish_servings
1.62154
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.59926022
vioscreen_oxalic
550.4113442
vioscreen_oxalicm
567.5182363
vioscreen_pantothe
6.406876738999999
vioscreen_pectins
7.376438757000001
vioscreen_pfa182
12.35249224
vioscreen_pfa183
1.345479469
vioscreen_pfa184
0.01728767
vioscreen_pfa204
0.111835626
vioscreen_pfa205
0.065917807
vioscreen_pfa225
0.024136985
vioscreen_pfa226
0.146712316
vioscreen_pfatot
14.12169842
vioscreen_phenylal
3.8867672439999996
vioscreen_phosphor
1674.296747
vioscreen_phytic
1151.6148970000002
vioscreen_pinitol
0.020109591
vioscreen_potass
4896.767808
vioscreen_procdate
10/28/15
vioscreen_proline
5.344712516
vioscreen_protanim
42.33758829
vioscreen_protein
82.61402504
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
40.26318226
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
216.0
vioscreen_retinol
305.9659675
vioscreen_rgrain
0.706767127
vioscreen_ribofla
2.204191694
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.429119999999999
vioscreen_satoco
0.0
vioscreen_selenium
115.00976029999998
vioscreen_serine
4.308383388
vioscreen_sfa100
0.429150683
vioscreen_sfa120
0.489095944
vioscreen_sfa140
1.856575242
vioscreen_sfa160
10.96657548
vioscreen_sfa170
0.095287678
vioscreen_sfa180
4.059150926
vioscreen_sfa200
0.194794537
vioscreen_sfa220
0.301726041
vioscreen_sfa40
0.5550411279999999
vioscreen_sfa60
0.28084929999999997
vioscreen_sfa80
0.19693149899999998
vioscreen_sfatot
19.92282213
vioscreen_sodium
3296.5698629999997
vioscreen_sorbitol
2.257260341
vioscreen_srvid
20361.0
vioscreen_starch
72.77097603
vioscreen_started
8/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
42.09044039
vioscreen_sweet_servings
0.047580000000000004
vioscreen_tagatose
5.864629709
vioscreen_tfa161t
0.037643835
vioscreen_tfa181t
0.965780765
vioscreen_tfa182t
0.20917809899999998
vioscreen_tgrain
4.3086853860000005
vioscreen_thiamin
1.662273752
vioscreen_threonin
3.1369040289999996
vioscreen_time
36.0
vioscreen_totaltfa
1.256547985
vioscreen_totcla
0.08350685299999999
vioscreen_totfolat
531.0035958999999
vioscreen_totsugar
138.3977847
vioscreen_tryptoph
0.930849258
vioscreen_tyrosine
3.011589322
vioscreen_user_id
20361.0
vioscreen_v_drkgr
0.727835626
vioscreen_v_orange
0.467972638
vioscreen_v_other
2.213260013
vioscreen_v_potato
0.389451996
vioscreen_v_starcy
0.06394520599999999
vioscreen_v_tomato
0.81676711
vioscreen_v_total
4.679177146000001
vioscreen_valine
4.495342265
vioscreen_veg5_day
8.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
9.4
vioscreen_visit
1.0
vioscreen_vita_iu
23400.194519999997
vioscreen_vita_rae
1424.9901539999998
vioscreen_vita_re
2544.0160960000003
vioscreen_vitb12
4.395589081000001
vioscreen_vitb6
2.229123301
vioscreen_vitc
317.8917808
vioscreen_vitd
5.700054848
vioscreen_vitd2
0.000438356
vioscreen_vitd3
5.699644157000001
vioscreen_vitd_iu
228.00219390000004
vioscreen_vite_iu
19.30438249
vioscreen_vitk
364.77538530000004
vioscreen_water
4410.947945
vioscreen_weight
Not provided
vioscreen_wgrain
3.601972522
vioscreen_whole_grain_servings
3.65225
vioscreen_xylitol
0.10073973800000001
vioscreen_zinc
13.1186296
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)