American Gut Project; 10317.000030624
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634207
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-10T05:20:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030624
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
37.0
age_corrected
37.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030624
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1978.0
bmi
20.52
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
09/04/2015
collection month
September
collection season
Fall
collection time
15:00
collection_timestamp
2015-09-04 15:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
19.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Never
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
178.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1e488801d63158448490ef7c3cbe641da946d7658598907961149a3a558cd574a7e408975d3beac1d387e39755042e2a8aa5ae546bc047a463f14a41350ce003
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
Self-diagnosed
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
53.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-2.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by an alternative medicine practitioner
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Daily
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030624
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
Diagnosed by an alternative medicine practitioner
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
1c71c1abbbf1a0eb
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.26115068399999997
vioscreen_a_cal
25.64279484
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.442958884
vioscreen_addsugar
8.547204757000001
vioscreen_adsugtot
7.950849476
vioscreen_age
215.0
vioscreen_alanine
4.788109348
vioscreen_alcohol
3.66326018
vioscreen_alcohol_servings
0.26115
vioscreen_alphacar
3374.2828770000006
vioscreen_alphtoce
12.7482462
vioscreen_alphtoco
11.72810895
vioscreen_arginine
5.424136812
vioscreen_ash
20.20277183
vioscreen_aspartam
15.97526086
vioscreen_aspartic
8.727506956000001
vioscreen_avcarb
79.92648759
vioscreen_bcodeid
Not provided
vioscreen_betacar
13462.861640000001
vioscreen_betacryp
164.6040775
vioscreen_betaine
57.253617299999995
vioscreen_betatoco
0.226027418
vioscreen_biochana
0.009890411
vioscreen_bmi
Not provided
vioscreen_caffeine
48.46810788
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.1229
vioscreen_calcium_servings
1.42173
vioscreen_calories
1309.477911
vioscreen_carbo
99.66599957
vioscreen_cholest
497.01716610000005
vioscreen_choline
548.4416952
vioscreen_clac9t11
0.049917812
vioscreen_clat10c12
0.014027398
vioscreen_copper
1.325232937
vioscreen_coumest
0.00005479999999999999
vioscreen_cystine
1.166164367
vioscreen_d_cheese
0.000465753
vioscreen_d_milk
0.1220274
vioscreen_d_tot_soym
0.122904111
vioscreen_d_total
0.122904111
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.05928767
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.4200273909999999
vioscreen_discfat_oil
24.06931186
vioscreen_discfat_sol
21.89410986
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.034054795
vioscreen_f_nj_citmlb
0.028547945
vioscreen_f_nj_other
0.128191783
vioscreen_f_nj_total
0.156739734
vioscreen_f_other
0.139479452
vioscreen_f_total
0.17356165
vioscreen_fat
62.48347603
vioscreen_fiber
19.73857288
vioscreen_fibh2o
4.02304119
vioscreen_fibinso
15.89545564
vioscreen_finished
9/3/15
vioscreen_fish_servings
4.9725
vioscreen_fol_deqv
402.3923801
vioscreen_fol_nat
347.88949060000004
vioscreen_fol_syn
32.05060467
vioscreen_formontn
0.001534247
vioscreen_fried_fish_servings
1.58808
vioscreen_fried_food_servings
0.32877
vioscreen_frt5_day
0.1
vioscreen_frtsumm
0.3
vioscreen_fructose
8.590877836
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
1.6637809019999998
vioscreen_g_total
1.681534273
vioscreen_g_whl
0.017780821000000002
vioscreen_galactos
0.11200001300000001
vioscreen_gammtoco
9.150958503
vioscreen_gender
false
vioscreen_genistn
0.060602742
vioscreen_glac
33.259778999999995
vioscreen_gltc
37.40564533
vioscreen_glucose
9.353972469
vioscreen_glutamic
14.11972656
vioscreen_glycine
4.000795296000001
vioscreen_glycitn
0.01090411
vioscreen_grams
4004.496233
vioscreen_hei2010_dairy
0.7
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
0.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
63.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
1.5
vioscreen_hei2010_whole_grains
0.1
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
0.8
vioscreen_hei_grains
2.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.7
vioscreen_hei_non_juice_frt
1.5
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
7.7
vioscreen_hei_score
62.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.364109321
vioscreen_inositol
0.068575339
vioscreen_iron
10.12454918
vioscreen_isoleuc
4.037479599
vioscreen_isomalt
0.0
vioscreen_joules
5478.855479
vioscreen_juice_servings
0.03367
vioscreen_lactitol
0.0
vioscreen_lactose
1.395178055
vioscreen_legumes
0.004082192
vioscreen_leucine
6.504877461
vioscreen_line_gi
222.769542
vioscreen_low_fat_dairy_serving
0.00951
vioscreen_lutzeax
7916.285615999999
vioscreen_lycopene
10150.98425
vioscreen_lysine
6.7158624520000005
vioscreen_m_egg
1.618657695
vioscreen_m_fish_hi
0.7869863009999999
vioscreen_m_fish_lo
2.046712463
vioscreen_m_frank
0.266575351
vioscreen_m_meat
1.191753398
vioscreen_m_mpf
7.334603088
vioscreen_m_nutsd
0.335287664
vioscreen_m_organ
0.0
vioscreen_m_poult
3.0426573869999998
vioscreen_m_soy
0.0027123290000000003
vioscreen_magnes
257.11384849999996
vioscreen_maltitol
0.0
vioscreen_maltose
0.40498628
vioscreen_mangan
2.614986556
vioscreen_mannitol
0.412273919
vioscreen_methhis3
26.90654698
vioscreen_methion
2.196218997
vioscreen_mfa141
0.040931508
vioscreen_mfa161
1.098958974
vioscreen_mfa181
23.10715165
vioscreen_mfa201
0.39810966600000003
vioscreen_mfa221
0.109041104
vioscreen_mfatot
24.83885649
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.72810895
vioscreen_nccglbr
66.13108412
vioscreen_nccglgr
46.2565229
vioscreen_niacin
20.77309503
vioscreen_niacineq
36.64904217
vioscreen_nitrogen
13.80849342
vioscreen_non_fried_fish_servings
3.3844199999999995
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.391424644
vioscreen_oxalic
250.08488870000002
vioscreen_oxalicm
239.1177012
vioscreen_pantothe
5.323670938999999
vioscreen_pectins
4.69668437
vioscreen_pfa182
13.88076573
vioscreen_pfa183
1.836055055
vioscreen_pfa184
0.028027396
vioscreen_pfa204
0.30284931800000003
vioscreen_pfa205
0.142191775
vioscreen_pfa225
0.063013699
vioscreen_pfa226
0.32432876
vioscreen_pfatot
16.70224609
vioscreen_phenylal
3.618191487
vioscreen_phosphor
1036.504623
vioscreen_phytic
274.96110869999995
vioscreen_pinitol
0.000575342
vioscreen_potass
2871.739041
vioscreen_procdate
10/28/15
vioscreen_proline
3.6628769130000003
vioscreen_protanim
68.23977954
vioscreen_protein
85.89266374
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
17.65509552
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
126.0
vioscreen_retinol
230.568536
vioscreen_rgrain
1.379890337
vioscreen_ribofla
1.33090419
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.37252
vioscreen_satoco
0.0
vioscreen_selenium
116.49230520000002
vioscreen_serine
3.819643287
vioscreen_sfa100
0.102410951
vioscreen_sfa120
0.158027398
vioscreen_sfa140
0.6125479079999999
vioscreen_sfa160
9.471944563
vioscreen_sfa170
0.062657542
vioscreen_sfa180
3.7623013430000003
vioscreen_sfa200
0.145534244
vioscreen_sfa220
0.12704110300000002
vioscreen_sfa40
0.106684949
vioscreen_sfa60
0.067561649
vioscreen_sfa80
0.049123294000000005
vioscreen_sfatot
14.79084974
vioscreen_sodium
4061.0941780000003
vioscreen_sorbitol
0.07808219200000001
vioscreen_srvid
20604.0
vioscreen_starch
39.17641
vioscreen_started
9/3/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.45772622
vioscreen_sweet_servings
0.03288
vioscreen_tagatose
0.05191781
vioscreen_tfa161t
0.02753425
vioscreen_tfa181t
1.3843561880000002
vioscreen_tfa182t
0.233150702
vioscreen_tgrain
1.5126026730000002
vioscreen_thiamin
1.005123274
vioscreen_threonin
3.667260073
vioscreen_time
16.0
vioscreen_totaltfa
1.660766936
vioscreen_totcla
0.064657535
vioscreen_totfolat
379.94015410000003
vioscreen_totsugar
30.57961259
vioscreen_tryptoph
0.952465653
vioscreen_tyrosine
2.8965753419999998
vioscreen_user_id
20604.0
vioscreen_v_drkgr
1.09490415
vioscreen_v_orange
0.5912329270000001
vioscreen_v_other
1.98030153
vioscreen_v_potato
0.394082182
vioscreen_v_starcy
0.264630148
vioscreen_v_tomato
1.0310684829999999
vioscreen_v_total
5.355999839
vioscreen_valine
4.357342613
vioscreen_veg5_day
11.6
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
10.7
vioscreen_visit
1.0
vioscreen_vita_iu
26155.14521
vioscreen_vita_rae
1499.926712
vioscreen_vita_re
2769.2875
vioscreen_vitb12
4.88380846
vioscreen_vitb6
2.22295875
vioscreen_vitc
221.86466180000002
vioscreen_vitd
6.803314961
vioscreen_vitd2
0.0
vioscreen_vitd3
6.803314961
vioscreen_vitd_iu
272.1325985
vioscreen_vite_iu
17.51156223
vioscreen_vitk
390.5851455
vioscreen_water
3756.786986
vioscreen_weight
Not provided
vioscreen_wgrain
0.132712335
vioscreen_whole_grain_servings
0.01778
vioscreen_xylitol
0.02279452
vioscreen_zinc
10.996956599999999
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never