10317.000028109; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633564
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:56Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028109
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
51.0
age_corrected
51.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
true
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28109
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1964.0
bmi
19.61
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
06/10/2015
collection month
June
collection season
Summer
collection time
06:45
collection_timestamp
2015-06-10 06:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
15.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Never
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
172.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
ae6e4e29afab4de2a0356cd4e131539d7dd8cec3983a972f9a5ef597ac22ad53e52db9aad7ad29904a33950ac3515290156429172d086e16329d19dc12736276
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
Not provided
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000028109
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Daily
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
accf61a75db72dfd
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Never
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.3304112260000003
vioscreen_addsugar
15.30334305
vioscreen_adsugtot
13.71482235
vioscreen_age
215.0
vioscreen_alanine
2.7759725489999996
vioscreen_alcohol
0.002575342
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
611.5862586000001
vioscreen_alphtoce
7.285644531
vioscreen_alphtoco
6.373754548
vioscreen_arginine
3.08556159
vioscreen_ash
14.84441085
vioscreen_aspartam
0.0
vioscreen_aspartic
5.202850091
vioscreen_avcarb
196.66609590000002
vioscreen_bcodeid
Not provided
vioscreen_betacar
5259.421575
vioscreen_betacryp
14.22841128
vioscreen_betaine
112.60433429999999
vioscreen_betatoco
0.325835596
vioscreen_biochana
0.000109589
vioscreen_bmi
Not provided
vioscreen_caffeine
215.19875860000002
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.09175
vioscreen_calcium_servings
2.34921
vioscreen_calories
1494.696747
vioscreen_carbo
216.5825128
vioscreen_cholest
140.0663206
vioscreen_choline
253.4922089
vioscreen_clac9t11
0.048602744
vioscreen_clat10c12
0.011205478999999999
vioscreen_copper
1.0555889809999999
vioscreen_coumest
0.07112329
vioscreen_cystine
0.8621369659999999
vioscreen_d_cheese
0.004027397
vioscreen_d_milk
1.087671233
vioscreen_d_tot_soym
1.091753398
vioscreen_d_total
1.091753398
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.140931514
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.569150658
vioscreen_discfat_oil
21.63860231
vioscreen_discfat_sol
12.38756154
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0013698629999999998
vioscreen_f_citmlb
0.003150685
vioscreen_f_nj_citmlb
0.000465753
vioscreen_f_nj_other
0.836438323
vioscreen_f_nj_total
0.836904113
vioscreen_f_other
1.590547912
vioscreen_f_total
1.593698496
vioscreen_fat
47.89504495
vioscreen_fiber
19.91621896
vioscreen_fibh2o
7.629890839
vioscreen_fibinso
12.31501632
vioscreen_finished
6/6/15
vioscreen_fish_servings
1.36731
vioscreen_fol_deqv
641.0657962
vioscreen_fol_nat
133.4495719
vioscreen_fol_syn
298.6432577
vioscreen_formontn
0.0
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.3799
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.2
vioscreen_fructose
23.7195366
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
3.779671112
vioscreen_g_total
6.909205105
vioscreen_g_whl
3.129534327
vioscreen_galactos
0.043287669
vioscreen_gammtoco
7.666876472
vioscreen_gender
false
vioscreen_genistn
0.11753425099999999
vioscreen_glac
109.334878
vioscreen_gltc
120.13529540000002
vioscreen_glucose
18.74526033
vioscreen_glutamic
11.21112412
vioscreen_glycine
2.4524932440000002
vioscreen_glycitn
0.007671233
vioscreen_grams
2623.747432
vioscreen_hei2010_dairy
5.6
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
1.0
vioscreen_hei2010_protien_foods
4.8
vioscreen_hei2010_refined_grains
7.1
vioscreen_hei2010_score
80.8
vioscreen_hei2010_sea_foods_plant_protiens
3.6
vioscreen_hei2010_sodium
4.8
vioscreen_hei2010_veg
3.9
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
3.1
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
9.6
vioscreen_hei_milk
5.6
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.8
vioscreen_hei_score
85.8
vioscreen_hei_sodium
3.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
3.9
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.513287604
vioscreen_inositol
0.085397255
vioscreen_iron
17.929698199999997
vioscreen_isoleuc
2.464602619
vioscreen_isomalt
0.0
vioscreen_joules
6253.809589
vioscreen_juice_servings
1.5136399999999999
vioscreen_lactitol
0.0
vioscreen_lactose
13.50153441
vioscreen_legumes
0.0
vioscreen_leucine
4.4237261210000005
vioscreen_line_gi
497.10295379999997
vioscreen_low_fat_dairy_serving
0.83268
vioscreen_lutzeax
1272.483048
vioscreen_lycopene
1406.144606
vioscreen_lysine
3.6666851719999998
vioscreen_m_egg
0.300027403
vioscreen_m_fish_hi
0.44342467399999996
vioscreen_m_fish_lo
0.33572603
vioscreen_m_frank
1.081643802
vioscreen_m_meat
1.057863
vioscreen_m_mpf
3.211506716
vioscreen_m_nutsd
0.072356164
vioscreen_m_organ
0.0
vioscreen_m_poult
0.292876696
vioscreen_m_soy
0.00139726
vioscreen_magnes
290.537607
vioscreen_maltitol
0.0
vioscreen_maltose
2.94723285
vioscreen_mangan
5.5652868820000005
vioscreen_mannitol
0.363397259
vioscreen_methhis3
10.36600024
vioscreen_methion
1.2564109490000002
vioscreen_mfa141
0.039205475
vioscreen_mfa161
0.6970684309999999
vioscreen_mfa181
16.435724800000003
vioscreen_mfa201
0.18619175699999999
vioscreen_mfa221
0.068082193
vioscreen_mfatot
17.56928778
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
6.373754548
vioscreen_nccglbr
164.51750859999999
vioscreen_nccglgr
115.07720459999999
vioscreen_niacin
18.38821704
vioscreen_niacineq
29.0118659
vioscreen_nitrogen
9.14339817
vioscreen_non_fried_fish_servings
1.36731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.216000074
vioscreen_oxalic
142.9800835
vioscreen_oxalicm
147.73946919999997
vioscreen_pantothe
4.56454844
vioscreen_pectins
2.256383608
vioscreen_pfa182
12.65443868
vioscreen_pfa183
0.9870136420000001
vioscreen_pfa184
0.01558904
vioscreen_pfa204
0.072136986
vioscreen_pfa205
0.061397265
vioscreen_pfa225
0.028273972
vioscreen_pfa226
0.124383555
vioscreen_pfatot
13.98616492
vioscreen_phenylal
2.577205459
vioscreen_phosphor
1024.600171
vioscreen_phytic
760.8254281000001
vioscreen_pinitol
0.000684932
vioscreen_potass
2491.211986
vioscreen_procdate
10/28/15
vioscreen_proline
3.475726068
vioscreen_protanim
32.87013592
vioscreen_protein
56.39205908
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.52205694
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
407.0
vioscreen_retinol
375.9727312
vioscreen_rgrain
3.385643528
vioscreen_ribofla
1.9322190380000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.03532
vioscreen_satoco
0.0
vioscreen_selenium
92.89539812
vioscreen_serine
2.685999538
vioscreen_sfa100
0.09345205599999999
vioscreen_sfa120
0.10676712699999999
vioscreen_sfa140
0.568054701
vioscreen_sfa160
7.42827416
vioscreen_sfa170
0.04980822
vioscreen_sfa180
3.544356338
vioscreen_sfa200
0.083452047
vioscreen_sfa220
0.034958905
vioscreen_sfa40
0.092301366
vioscreen_sfa60
0.03361644
vioscreen_sfa80
0.02928767
vioscreen_sfatot
12.17808219
vioscreen_sodium
2342.910274
vioscreen_sorbitol
1.50909591
vioscreen_srvid
18835.0
vioscreen_starch
107.48026540000001
vioscreen_started
6/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
14.33988923
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.475561523
vioscreen_tfa161t
0.027013698
vioscreen_tfa181t
0.855808206
vioscreen_tfa182t
0.248328765
vioscreen_tgrain
7.348438169
vioscreen_thiamin
1.668273759
vioscreen_threonin
2.149095342
vioscreen_time
27.0
vioscreen_totaltfa
1.156986184
vioscreen_totcla
0.060547940999999994
vioscreen_totfolat
432.09293660000003
vioscreen_totsugar
73.3385167
vioscreen_tryptoph
0.636657506
vioscreen_tyrosine
1.9194794119999998
vioscreen_user_id
18835.0
vioscreen_v_drkgr
0.057835613
vioscreen_v_orange
0.317643842
vioscreen_v_other
0.223068488
vioscreen_v_potato
0.576301387
vioscreen_v_starcy
0.05057534
vioscreen_v_tomato
0.052273972
vioscreen_v_total
1.27769859
vioscreen_valine
2.926712663
vioscreen_veg5_day
1.0
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
2.6
vioscreen_visit
1.0
vioscreen_vita_iu
10541.78014
vioscreen_vita_rae
840.3330479
vioscreen_vita_re
1304.694349
vioscreen_vitb12
4.715232368000001
vioscreen_vitb6
1.6276984230000002
vioscreen_vitc
36.79460081
vioscreen_vitd
6.868437634
vioscreen_vitd2
0.000438356
vioscreen_vitd3
6.868026942
vioscreen_vitd_iu
274.7375054
vioscreen_vite_iu
9.481151675
vioscreen_vitk
44.16534407
vioscreen_water
2297.562329
vioscreen_weight
Not provided
vioscreen_wgrain
3.9627946410000003
vioscreen_whole_grain_servings
3.12953
vioscreen_xylitol
0.012438356000000001
vioscreen_zinc
11.62898384
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Not provided
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)