American Gut Project; 10317.000023006
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632607
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:16Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023006
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
40s
age years
43.0
age_corrected
43.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23006
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
Not provided
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1971.0
bmi
25.75
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Not provided
collection date
01/12/2015
collection month
January
collection season
Winter
collection time
11:15
collection_timestamp
2015-01-12 11:15
consume_animal_products_abx
Yes
contraceptive
Yes, I use a hormonal IUD (Mirena)
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southwest
elevation
202.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Not provided
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
7f9ce4c2f5b84e4ac8c0cf9f65bc72f97c4b944e6b08e69773aaa8c2a9c67c6d4cf913ed20bb601751d1e70735842b37208ba87a8b1777be3bc5d37ca1d89203
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
32.9
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-97.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000023006
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
TX
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Occasionally (1-2 times/week)
sugary_sweets_frequency
Daily
survey_id
b1a691619b78d8c8
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.9068767390000001
vioscreen_a_cal
97.56415882
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.25898438
vioscreen_addsugar
76.17956978
vioscreen_adsugtot
61.51646511
vioscreen_age
215.0
vioscreen_alanine
3.710986663
vioscreen_alcohol
13.22301343
vioscreen_alcohol_servings
0.9068799999999999
vioscreen_alphacar
1205.386387
vioscreen_alphtoce
9.082219205
vioscreen_alphtoco
8.054493525
vioscreen_arginine
4.3301650789999995
vioscreen_ash
19.12117669
vioscreen_aspartam
34.61306721
vioscreen_aspartic
7.094029591
vioscreen_avcarb
252.5250214
vioscreen_bcodeid
Not provided
vioscreen_betacar
6393.658904
vioscreen_betacryp
249.09300090000002
vioscreen_betaine
139.0808754
vioscreen_betatoco
0.261315061
vioscreen_biochana
0.015287671999999999
vioscreen_bmi
Not provided
vioscreen_caffeine
209.70295380000002
vioscreen_calcium
true
vioscreen_calcium_avg
71.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
1
vioscreen_calcium_from_dairy_servings
1.37863
vioscreen_calcium_servings
2.5689599999999997
vioscreen_calories
2015.7167809999999
vioscreen_carbo
279.2419521
vioscreen_cholest
211.854131
vioscreen_choline
314.21639550000003
vioscreen_clac9t11
0.10797261300000001
vioscreen_clat10c12
0.021561647000000003
vioscreen_copper
1.553890699
vioscreen_coumest
0.057589042
vioscreen_cystine
0.931178012
vioscreen_d_cheese
0.9851233079999999
vioscreen_d_milk
0.335369873
vioscreen_d_tot_soym
1.378630087
vioscreen_d_total
1.378630087
vioscreen_d_yogurt
0.057506849000000006
vioscreen_daidzein
0.096410966
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.372767117
vioscreen_discfat_oil
11.24383428
vioscreen_discfat_sol
31.84545163
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0010136989999999999
vioscreen_f_citmlb
0.9824931109999999
vioscreen_f_nj_citmlb
0.336328752
vioscreen_f_nj_other
1.3127397090000001
vioscreen_f_nj_total
1.649205372
vioscreen_f_other
1.3127397090000001
vioscreen_f_total
2.295369689
vioscreen_fat
60.54593857
vioscreen_fiber
26.54728168
vioscreen_fibh2o
6.9978629329999995
vioscreen_fibinso
19.487811699999998
vioscreen_finished
1/10/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
473.8465325
vioscreen_fol_nat
367.1847603
vioscreen_fol_syn
62.72095462
vioscreen_formontn
0.002520548
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
2.9
vioscreen_frtsumm
4.6
vioscreen_fructose
37.19403093
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
4.150575235
vioscreen_g_total
5.718630271
vioscreen_g_whl
1.5680548680000002
vioscreen_galactos
0.845506726
vioscreen_gammtoco
7.10512294
vioscreen_gender
false
vioscreen_genistn
0.19298632899999998
vioscreen_glac
129.2091396
vioscreen_gltc
140.0358947
vioscreen_glucose
39.99386237
vioscreen_glutamic
13.97424818
vioscreen_glycine
3.321725171
vioscreen_glycitn
0.022657532999999997
vioscreen_grams
3180.943836
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
15.4
vioscreen_hei2010_fatty_acids
3.1
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
4.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
9.0
vioscreen_hei2010_score
68.0
vioscreen_hei2010_sea_foods_plant_protiens
3.4
vioscreen_hei2010_sodium
2.4
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.2
vioscreen_hei_drk_g_org_veg_leg
4.2
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
4.6
vioscreen_hei_sat_fat
8.5
vioscreen_hei_score
69.5
vioscreen_hei_sodium
1.9
vioscreen_hei_sol_fat_alc_add_sug
12.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
2.134766963
vioscreen_inositol
0.35961642299999996
vioscreen_iron
12.95849342
vioscreen_isoleuc
3.37463011
vioscreen_isomalt
0.0
vioscreen_joules
8433.759589
vioscreen_juice_servings
1.29233
vioscreen_lactitol
0.0
vioscreen_lactose
5.818848994
vioscreen_legumes
0.235890407
vioscreen_leucine
5.816520627999999
vioscreen_line_gi
592.7379281000001
vioscreen_low_fat_dairy_serving
0.72247
vioscreen_lutzeax
2317.317637
vioscreen_lycopene
8975.283562
vioscreen_lysine
4.925396645
vioscreen_m_egg
0.336739736
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.9236711890000001
vioscreen_m_meat
1.891561597
vioscreen_m_mpf
4.091232676000001
vioscreen_m_nutsd
1.095561574
vioscreen_m_organ
0.0
vioscreen_m_poult
1.275999973
vioscreen_m_soy
0.001835616
vioscreen_magnes
356.6946704
vioscreen_maltitol
0.0
vioscreen_maltose
5.59997291
vioscreen_mangan
5.704631313999999
vioscreen_mannitol
0.286876731
vioscreen_methhis3
16.38043932
vioscreen_methion
1.664328379
vioscreen_mfa141
0.07854795099999999
vioscreen_mfa161
1.152876762
vioscreen_mfa181
21.47495719
vioscreen_mfa201
0.203287684
vioscreen_mfa221
0.007835616
vioscreen_mfatot
23.11205587
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2
vioscreen_natoco
7.891288527
vioscreen_nccglbr
225.6599957
vioscreen_nccglgr
157.8563035
vioscreen_niacin
21.95109295
vioscreen_niacineq
36.244242299999996
vioscreen_nitrogen
12.90188891
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.9427123190000001
vioscreen_oxalic
223.43435359999998
vioscreen_oxalicm
216.8096747
vioscreen_pantothe
5.290712289
vioscreen_pectins
4.735780648
vioscreen_pfa182
9.217671099
vioscreen_pfa183
0.8940000770000001
vioscreen_pfa184
0.000356164
vioscreen_pfa204
0.115397278
vioscreen_pfa205
0.0064109580000000005
vioscreen_pfa225
0.018328768999999998
vioscreen_pfa226
0.02430137
vioscreen_pfatot
10.32336794
vioscreen_phenylal
3.309725158
vioscreen_phosphor
1262.32988
vioscreen_phytic
752.6608732999999
vioscreen_pinitol
0.043808219
vioscreen_potass
3467.5417810000004
vioscreen_procdate
10/28/15
vioscreen_proline
4.68586292
vioscreen_protanim
48.11988442
vioscreen_protein
79.43404859
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
31.31293343
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
639.0
vioscreen_retinol
218.54327909999998
vioscreen_rgrain
3.627177534
vioscreen_ribofla
1.580959038
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.69277
vioscreen_satoco
0.36263013899999996
vioscreen_selenium
100.16933859999999
vioscreen_serine
3.371616144
vioscreen_sfa100
0.42608216200000004
vioscreen_sfa120
0.790739629
vioscreen_sfa140
1.9777537719999998
vioscreen_sfa160
11.1517538
vioscreen_sfa170
0.117561654
vioscreen_sfa180
4.660164945
vioscreen_sfa200
0.129726023
vioscreen_sfa220
0.18726027
vioscreen_sfa40
0.514219227
vioscreen_sfa60
0.24980819899999998
vioscreen_sfa80
0.236246543
vioscreen_sfatot
20.82764341
vioscreen_sodium
3604.3773969999997
vioscreen_sorbitol
0.20871233
vioscreen_srvid
16826.0
vioscreen_starch
94.65857235
vioscreen_started
1/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
35.06334279
vioscreen_sweet_servings
0.7238600000000001
vioscreen_tagatose
0.7971506620000001
vioscreen_tfa161t
0.035013701
vioscreen_tfa181t
1.3331231940000001
vioscreen_tfa182t
0.24745203300000002
vioscreen_tgrain
5.692930624
vioscreen_thiamin
1.463808159
vioscreen_threonin
2.926492937
vioscreen_time
18.0
vioscreen_totaltfa
1.69846576
vioscreen_totcla
0.13008217
vioscreen_totfolat
429.9056079
vioscreen_totsugar
123.8043343
vioscreen_tryptoph
0.858054885
vioscreen_tyrosine
2.540767304
vioscreen_user_id
16826.0
vioscreen_v_drkgr
0.103205474
vioscreen_v_orange
0.343315062
vioscreen_v_other
0.7711781120000001
vioscreen_v_potato
0.307013692
vioscreen_v_starcy
0.28468492100000004
vioscreen_v_tomato
0.482712294
vioscreen_v_total
2.292356225
vioscreen_valine
3.840109295
vioscreen_veg5_day
3.8
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
12596.43014
vioscreen_vita_rae
811.9521404
vioscreen_vita_re
1405.3602740000001
vioscreen_vitb12
3.04199988
vioscreen_vitb6
2.196383207
vioscreen_vitc
162.7654752
vioscreen_vitd
2.081835603
vioscreen_vitd2
0.001890411
vioscreen_vitd3
2.08002729
vioscreen_vitd_iu
83.27342412
vioscreen_vite_iu
12.130332300000001
vioscreen_vitk
87.6161173
vioscreen_water
2759.689041
vioscreen_weight
Not provided
vioscreen_wgrain
2.065753425
vioscreen_whole_grain_servings
1.56805
vioscreen_xylitol
0.035616441
vioscreen_zinc
12.00737238
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily