American Gut Project; 10317.000029312
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634015
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029312
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Self-diagnosed
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29312
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
26.3
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-20
collection month
August
collection season
Summer
collection time
16:00
collection_timestamp
2015-08-20 16:00
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
34.9
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Indoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
46e86e5941ba53b3355b2894909b7f7cfc5cb67b5b279d88d817bb77f7636079daf9b02264c040150308cf96f00271f267cb23981f6822ab322a1f649d3225f7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
3 months
latitude
55.0
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.4
lowgrain_diet_type
Not provided
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029312
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
3563052605473e9f
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
3.361342506
vioscreen_a_cal
460.38848459999997
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
11.71337088
vioscreen_addsugar
57.86967038
vioscreen_adsugtot
48.16784033
vioscreen_age
215.0
vioscreen_alanine
3.618795149
vioscreen_alcohol
48.89186644
vioscreen_alcohol_servings
3.36134
vioscreen_alphacar
693.7340753
vioscreen_alphtoce
9.844604158
vioscreen_alphtoco
8.615974823
vioscreen_arginine
4.246793397
vioscreen_ash
26.33205533
vioscreen_aspartam
0.0
vioscreen_aspartic
8.089643755
vioscreen_avcarb
308.76162239999996
vioscreen_bcodeid
Not provided
vioscreen_betacar
3099.786986
vioscreen_betacryp
158.9305437
vioscreen_betaine
284.1718322
vioscreen_betatoco
0.41468485
vioscreen_biochana
0.008356165
vioscreen_bmi
Not provided
vioscreen_caffeine
380.74666099999996
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.82419
vioscreen_calcium_servings
4.23071
vioscreen_calories
2630.4554789999997
vioscreen_carbo
339.8233947
vioscreen_cholest
280.2739298
vioscreen_choline
539.529024
vioscreen_clac9t11
0.094630119
vioscreen_clat10c12
0.016986303
vioscreen_copper
2.257671367
vioscreen_coumest
0.320383547
vioscreen_cystine
1.156246488
vioscreen_d_cheese
0.195835605
vioscreen_d_milk
2.5513151819999997
vioscreen_d_tot_soym
2.824191995
vioscreen_d_total
2.824191995
vioscreen_d_yogurt
0.076684931
vioscreen_daidzein
0.381205478
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.475452162
vioscreen_discfat_oil
21.18230014
vioscreen_discfat_sol
37.61096426
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.717041099
vioscreen_f_nj_citmlb
0.07246575
vioscreen_f_nj_other
0.5852877679999999
vioscreen_f_nj_total
0.6578905079999999
vioscreen_f_other
0.5852877679999999
vioscreen_f_total
1.30246582
vioscreen_fat
70.83863442
vioscreen_fiber
31.04123769
vioscreen_fibh2o
12.49504227
vioscreen_fibinso
18.59309584
vioscreen_finished
8/20/15
vioscreen_fish_servings
1.97596
vioscreen_fol_deqv
594.2619434999999
vioscreen_fol_nat
422.41990580000004
vioscreen_fol_syn
101.0512949
vioscreen_formontn
0.0013150689999999999
vioscreen_fried_fish_servings
0.64135
vioscreen_fried_food_servings
0.11507
vioscreen_frt5_day
1.6
vioscreen_frtsumm
2.6
vioscreen_fructose
22.34646698
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
3.7689593589999997
vioscreen_g_total
8.126986569
vioscreen_g_whl
4.358054968
vioscreen_galactos
0.572684886
vioscreen_gammtoco
10.39109522
vioscreen_gender
false
vioscreen_genistn
0.222520551
vioscreen_glac
173.4355736
vioscreen_gltc
187.53638700000002
vioscreen_glucose
26.90879977
vioscreen_glutamic
17.34191594
vioscreen_glycine
3.150493298
vioscreen_glycitn
0.027945208
vioscreen_grams
4462.126711999999
vioscreen_hei2010_dairy
8.3
vioscreen_hei2010_empty_calories
13.7
vioscreen_hei2010_fatty_acids
4.2
vioscreen_hei2010_fruit
3.1
vioscreen_hei2010_greens_beans
2.7
vioscreen_hei2010_protien_foods
3.2
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
78.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
10.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.1
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
1.8
vioscreen_hei_fruit
3.1
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
6.5
vioscreen_hei_milk
8.3
vioscreen_hei_non_juice_frt
3.1
vioscreen_hei_oils
6.7
vioscreen_hei_sat_fat
9.3
vioscreen_hei_score
70.0
vioscreen_hei_sodium
8.1
vioscreen_hei_sol_fat_alc_add_sug
8.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.162164557
vioscreen_inositol
0.354739756
vioscreen_iron
17.83011023
vioscreen_isoleuc
3.59926022
vioscreen_isomalt
0.0
vioscreen_joules
11005.8274
vioscreen_juice_servings
1.28918
vioscreen_lactitol
0.0
vioscreen_lactose
32.83610873
vioscreen_legumes
0.0009315069999999999
vioscreen_leucine
6.470905126
vioscreen_line_gi
848.4025685
vioscreen_low_fat_dairy_serving
1.16893
vioscreen_lutzeax
2317.954623
vioscreen_lycopene
4581.801027
vioscreen_lysine
5.331095824
vioscreen_m_egg
0.653671223
vioscreen_m_fish_hi
0.36441094399999996
vioscreen_m_fish_lo
0.76167126
vioscreen_m_frank
0.042630138
vioscreen_m_meat
0.529753426
vioscreen_m_mpf
2.420410992
vioscreen_m_nutsd
1.179452055
vioscreen_m_organ
0.203041098
vioscreen_m_poult
0.5189315170000001
vioscreen_m_soy
0.003972603
vioscreen_magnes
523.6294949
vioscreen_maltitol
0.0
vioscreen_maltose
4.336629789
vioscreen_mangan
6.047343215
vioscreen_mannitol
0.25227399899999997
vioscreen_methhis3
7.288054499999999
vioscreen_methion
1.7956439290000001
vioscreen_mfa141
0.08802739999999999
vioscreen_mfa161
0.948739749
vioscreen_mfa181
25.89597335
vioscreen_mfa201
0.273232865
vioscreen_mfa221
0.07106849999999999
vioscreen_mfatot
27.46800621
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.615974823
vioscreen_nccglbr
243.6054366
vioscreen_nccglgr
170.40183009999998
vioscreen_niacin
28.1308781
vioscreen_niacineq
44.12466289
vioscreen_nitrogen
14.48986248
vioscreen_non_fried_fish_servings
1.3346200000000001
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.2845477379999999
vioscreen_oxalic
251.474893
vioscreen_oxalicm
254.521661
vioscreen_pantothe
9.96065724
vioscreen_pectins
3.890054447
vioscreen_pfa182
12.43060119
vioscreen_pfa183
1.022356258
vioscreen_pfa184
0.016821917
vioscreen_pfa204
0.124219179
vioscreen_pfa205
0.07216438900000001
vioscreen_pfa225
0.025397262
vioscreen_pfa226
0.14830137300000001
vioscreen_pfatot
13.94013672
vioscreen_phenylal
3.823506394
vioscreen_phosphor
1912.1761989999998
vioscreen_phytic
1122.80137
vioscreen_pinitol
0.02871233
vioscreen_potass
4892.425685
vioscreen_procdate
10/28/15
vioscreen_proline
5.841151407000001
vioscreen_protanim
48.06986301
vioscreen_protein
89.03479238
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
40.96470997
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
185.0
vioscreen_retinol
988.2288527000001
vioscreen_rgrain
3.6845475710000004
vioscreen_ribofla
3.535698376
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.8021900000000002
vioscreen_satoco
0.0
vioscreen_selenium
135.17634850000002
vioscreen_serine
4.133890398
vioscreen_sfa100
0.500246565
vioscreen_sfa120
1.139616331
vioscreen_sfa140
1.984520481
vioscreen_sfa160
12.56424711
vioscreen_sfa170
0.10813699
vioscreen_sfa180
5.462905006000001
vioscreen_sfa200
0.17994520600000002
vioscreen_sfa220
0.219863014
vioscreen_sfa40
0.5762191560000001
vioscreen_sfa60
0.301616449
vioscreen_sfa80
0.26646578
vioscreen_sfatot
23.64410852
vioscreen_sodium
2843.853253
vioscreen_sorbitol
0.214712315
vioscreen_srvid
20452.0
vioscreen_starch
139.2643408
vioscreen_started
8/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
36.2949299
vioscreen_sweet_servings
0.83163
vioscreen_tagatose
2.163753311
vioscreen_tfa161t
0.034438357999999995
vioscreen_tfa181t
1.8747670630000002
vioscreen_tfa182t
0.36882186299999997
vioscreen_tgrain
8.687342813999999
vioscreen_thiamin
2.114657635
vioscreen_threonin
3.0633969660000004
vioscreen_time
36.0
vioscreen_totaltfa
2.400903989
vioscreen_totcla
0.111835605
vioscreen_totfolat
523.4710188
vioscreen_totsugar
123.3080372
vioscreen_tryptoph
0.959342392
vioscreen_tyrosine
3.00512294
vioscreen_user_id
20452.0
vioscreen_v_drkgr
0.287369861
vioscreen_v_orange
0.100054785
vioscreen_v_other
0.410465773
vioscreen_v_potato
1.55093158
vioscreen_v_starcy
0.022520548999999997
vioscreen_v_tomato
0.7435616270000001
vioscreen_v_total
3.114849435
vioscreen_valine
4.367534313
vioscreen_veg5_day
4.1
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
6.2
vioscreen_visit
1.0
vioscreen_vita_iu
9172.561644
vioscreen_vita_rae
1282.0723460000002
vioscreen_vita_re
1575.917466
vioscreen_vitb12
9.065452429
vioscreen_vitb6
2.906958677
vioscreen_vitc
140.5722603
vioscreen_vitd
10.98424658
vioscreen_vitd2
0.001479452
vioscreen_vitd3
10.98282186
vioscreen_vitd_iu
439.369863
vioscreen_vite_iu
12.78906919
vioscreen_vitk
128.2510274
vioscreen_water
3927.263699
vioscreen_weight
Not provided
vioscreen_wgrain
5.002876512
vioscreen_whole_grain_servings
4.35805
vioscreen_xylitol
0.033150686
vioscreen_zinc
13.2942423
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
76.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily