10317.000030083; American Gut Project
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634113
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030083
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
59.0
age_corrected
59.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030083
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1956.0
bmi
25.94
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-27
collection month
July
collection season
Summer
collection time
07:55
collection_timestamp
2015-07-27 07:55
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
95.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Not provided
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
3bb1e68a885e2790c86ba402e5a1efad410086be1b1b3b9e558f8748cb6d062551eab755ba06244c42620fa1f9440586fdf5a6a7b4a0eb9a2c23f502e241ee13
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
51.3
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
0.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000030083
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
41b2efc4e9567ea3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.4963835419999998
vioscreen_a_cal
171.4844392
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.039561818
vioscreen_addsugar
11.16463038
vioscreen_adsugtot
9.66969847
vioscreen_age
215.0
vioscreen_alanine
1.688082426
vioscreen_alcohol
22.45172838
vioscreen_alcohol_servings
1.4963799999999998
vioscreen_alphacar
731.5075342
vioscreen_alphtoce
11.90019264
vioscreen_alphtoco
11.2200008
vioscreen_arginine
2.244520214
vioscreen_ash
14.8178925
vioscreen_aspartam
0.0
vioscreen_aspartic
3.597917781
vioscreen_avcarb
60.15959439
vioscreen_bcodeid
Not provided
vioscreen_betacar
8887.627397
vioscreen_betacryp
73.04777932
vioscreen_betaine
69.22337329
vioscreen_betatoco
0.18739726399999998
vioscreen_biochana
0.002273973
vioscreen_bmi
Not provided
vioscreen_caffeine
37.41487586
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.49945
vioscreen_calcium_servings
1.60345
vioscreen_calories
1153.650428
vioscreen_carbo
78.03032427
vioscreen_cholest
357.05637839999997
vioscreen_choline
356.1305437
vioscreen_clac9t11
0.048547938
vioscreen_clat10c12
0.009780822
vioscreen_copper
0.9345753290000001
vioscreen_coumest
0.000164384
vioscreen_cystine
0.482274011
vioscreen_d_cheese
0.267041099
vioscreen_d_milk
0.161205469
vioscreen_d_tot_soym
0.49945206299999995
vioscreen_d_total
0.49945206299999995
vioscreen_d_yogurt
0.071205479
vioscreen_daidzein
0.047780823
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.9557534409999999
vioscreen_discfat_oil
23.86139769
vioscreen_discfat_sol
19.03101456
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001150685
vioscreen_f_citmlb
0.200438345
vioscreen_f_nj_citmlb
0.18989040399999998
vioscreen_f_nj_other
0.990657608
vioscreen_f_nj_total
1.180575352
vioscreen_f_other
0.990657608
vioscreen_f_total
1.1911233140000002
vioscreen_fat
65.64986087
vioscreen_fiber
17.87123288
vioscreen_fibh2o
4.544848967
vioscreen_fibinso
13.43655153
vioscreen_finished
7/26/15
vioscreen_fish_servings
0.8625
vioscreen_fol_deqv
329.7553296
vioscreen_fol_nat
323.191417
vioscreen_fol_syn
3.8609040560000003
vioscreen_formontn
0.000684932
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
0.8
vioscreen_frtsumm
2.4
vioscreen_fructose
7.127232047000001
vioscreen_fruit_servings
0.78356
vioscreen_g_nwhl
0.218273947
vioscreen_g_total
0.33336986399999996
vioscreen_g_whl
0.115095886
vioscreen_galactos
0.301671235
vioscreen_gammtoco
5.954217947
vioscreen_gender
false
vioscreen_genistn
0.037890411
vioscreen_glac
21.2646859
vioscreen_gltc
23.51841289
vioscreen_glucose
8.784355603
vioscreen_glutamic
5.741889849
vioscreen_glycine
1.381506766
vioscreen_glycitn
0.008273973
vioscreen_grams
2206.798116
vioscreen_hei2010_dairy
3.3
vioscreen_hei2010_empty_calories
17.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
3.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
3.1
vioscreen_hei_score
58.7
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
11.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
0.8385478820000001
vioscreen_inositol
0.086712328
vioscreen_iron
6.8310125479999995
vioscreen_isoleuc
1.5711504369999998
vioscreen_isomalt
0.0
vioscreen_joules
4826.871918
vioscreen_juice_servings
0.02112
vioscreen_lactitol
0.0
vioscreen_lactose
3.16386284
vioscreen_legumes
0.019178082
vioscreen_leucine
2.588903976
vioscreen_line_gi
103.1204623
vioscreen_low_fat_dairy_serving
0.07121
vioscreen_lutzeax
13163.1411
vioscreen_lycopene
929.2870719
vioscreen_lysine
2.305780782
vioscreen_m_egg
1.5686301040000001
vioscreen_m_fish_hi
0.156191776
vioscreen_m_fish_lo
0.335397255
vioscreen_m_frank
0.042630138
vioscreen_m_meat
0.10698631
vioscreen_m_mpf
0.7015616640000001
vioscreen_m_nutsd
0.862986358
vioscreen_m_organ
0.0
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.000383562
vioscreen_magnes
245.35340330000002
vioscreen_maltitol
0.0
vioscreen_maltose
0.400493172
vioscreen_mangan
2.324985786
vioscreen_mannitol
0.115671236
vioscreen_methhis3
1.90509585
vioscreen_methion
0.781123248
vioscreen_mfa141
0.034328766000000004
vioscreen_mfa161
1.2561095359999999
vioscreen_mfa181
28.11101777
vioscreen_mfa201
0.294328768
vioscreen_mfa221
0.03079452
vioscreen_mfatot
29.80827804
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.2200008
vioscreen_nccglbr
47.07618793
vioscreen_nccglgr
32.929283500000004
vioscreen_niacin
7.8436717410000005
vioscreen_niacineq
14.90728542
vioscreen_nitrogen
5.5872872970000005
vioscreen_non_fried_fish_servings
0.8625
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.6671232880000002
vioscreen_oxalic
652.9800514
vioscreen_oxalicm
669.4851455
vioscreen_pantothe
4.2055072110000005
vioscreen_pectins
4.492493177
vioscreen_pfa182
11.37219205
vioscreen_pfa183
1.529643521
vioscreen_pfa184
0.007287671
vioscreen_pfa204
0.13676712900000002
vioscreen_pfa205
0.036547946
vioscreen_pfa225
0.009972603
vioscreen_pfa226
0.083835617
vioscreen_pfatot
13.21712329
vioscreen_phenylal
1.6285203069999998
vioscreen_phosphor
656.8334332000001
vioscreen_phytic
306.8911815
vioscreen_pinitol
0.004356164
vioscreen_potass
2385.235959
vioscreen_procdate
10/28/15
vioscreen_proline
1.797972797
vioscreen_protanim
20.31090406
vioscreen_protein
34.57096265
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.26038233
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
259.0
vioscreen_retinol
249.19940069999998
vioscreen_rgrain
0.20054793699999998
vioscreen_ribofla
1.143561711
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.5822200000000002
vioscreen_satoco
0.0
vioscreen_selenium
53.21186323
vioscreen_serine
1.909287879
vioscreen_sfa100
0.296684934
vioscreen_sfa120
0.32958907
vioscreen_sfa140
1.154684992
vioscreen_sfa160
10.355644
vioscreen_sfa170
0.08257535099999999
vioscreen_sfa180
3.311067931
vioscreen_sfa200
0.162054788
vioscreen_sfa220
0.190657545
vioscreen_sfa40
0.35947942899999996
vioscreen_sfa60
0.21684934
vioscreen_sfa80
0.145863018
vioscreen_sfatot
16.77728756
vioscreen_sodium
2748.266438
vioscreen_sorbitol
0.40104115100000004
vioscreen_srvid
20237.0
vioscreen_starch
16.6033979
vioscreen_started
7/26/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
10.90191701
vioscreen_sweet_servings
0.047439999999999996
vioscreen_tagatose
0.7411780790000001
vioscreen_tfa161t
0.021013699
vioscreen_tfa181t
0.766246639
vioscreen_tfa182t
0.18504109800000001
vioscreen_tgrain
0.31561643
vioscreen_thiamin
0.5233698179999999
vioscreen_threonin
1.4113150819999998
vioscreen_time
35.0
vioscreen_totaltfa
0.9781642970000001
vioscreen_totcla
0.058547953
vioscreen_totfolat
327.05231160000005
vioscreen_totsugar
30.71268461
vioscreen_tryptoph
0.42613701
vioscreen_tyrosine
1.2732876709999998
vioscreen_user_id
20237.0
vioscreen_v_drkgr
1.11076702
vioscreen_v_orange
0.109780821
vioscreen_v_other
0.606657514
vioscreen_v_potato
0.262849322
vioscreen_v_starcy
0.00090411
vioscreen_v_tomato
0.160109585
vioscreen_v_total
2.25109579
vioscreen_valine
1.835890344
vioscreen_veg5_day
6.3
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.5
vioscreen_visit
1.0
vioscreen_vita_iu
16313.798630000001
vioscreen_vita_rae
1023.359332
vioscreen_vita_re
1797.517466
vioscreen_vitb12
1.868027444
vioscreen_vitb6
1.283205382
vioscreen_vitc
102.54953979999999
vioscreen_vitd
3.509397073
vioscreen_vitd2
0.000191781
vioscreen_vitd3
3.5092328630000003
vioscreen_vitd_iu
140.37588290000002
vioscreen_vite_iu
16.74372592
vioscreen_vitk
527.5387842
vioscreen_water
1999.8702050000002
vioscreen_weight
Not provided
vioscreen_wgrain
0.11506849300000001
vioscreen_whole_grain_servings
0.1151
vioscreen_xylitol
0.038712332
vioscreen_zinc
4.98397267
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
82.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)