American Gut Project; 10317.000021277
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632449
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T22:50:47Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000021277
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
true
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
21277
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
28.35
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
12/07/2014
collection month
December
collection season
Winter
collection time
09:00
collection_timestamp
2014-12-07 09:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Southeast
elevation
8.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Both
fed_as_infant
Not sure
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
41f70ac0e738602a8ac49831a0ac793b39170ade730d3335f9f56f243c7136b5215d113abeeb5faabe4acd97184f22bcc0c3e4f3c3458f963a24037c54293623
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
26.7
level_of_education
Some college or technical school
liver_disease
I do not have this condition
livingwith
No
longitude
-80.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000021277
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
FL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Regularly (3-5 times/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
1400f6651f9d0d61
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
1.4495068690000001
vioscreen_a_cal
190.7377783
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.84172731
vioscreen_addsugar
82.34813784
vioscreen_adsugtot
71.26581229
vioscreen_age
214.0
vioscreen_alanine
5.611233812999999
vioscreen_alcohol
20.61588988
vioscreen_alcohol_servings
1.44951
vioscreen_alphacar
2298.121404
vioscreen_alphtoce
16.7160571
vioscreen_alphtoco
13.91073817
vioscreen_arginine
6.33843643
vioscreen_ash
26.7807363
vioscreen_aspartam
0.0
vioscreen_aspartic
10.24380752
vioscreen_avcarb
312.9166952
vioscreen_bcodeid
Not provided
vioscreen_betacar
9493.484932
vioscreen_betacryp
163.56455480000002
vioscreen_betaine
242.2263485
vioscreen_betatoco
0.7730684459999999
vioscreen_biochana
0.017178083
vioscreen_bmi
Not provided
vioscreen_caffeine
41.00709546
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.76762
vioscreen_calcium_servings
3.6381900000000003
vioscreen_calories
2908.071575
vioscreen_carbo
342.4425086
vioscreen_cholest
350.1719392
vioscreen_choline
473.3119863
vioscreen_clac9t11
0.15846575400000001
vioscreen_clat10c12
0.036356168
vioscreen_copper
2.4923839830000003
vioscreen_coumest
0.042191782000000004
vioscreen_cystine
1.472548059
vioscreen_d_cheese
1.00830145
vioscreen_d_milk
0.613452065
vioscreen_d_tot_soym
1.767616418
vioscreen_d_total
1.767616418
vioscreen_d_yogurt
0.142410958
vioscreen_daidzein
0.248273938
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.325150498
vioscreen_discfat_oil
33.51614405
vioscreen_discfat_sol
52.01252676
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001534246
vioscreen_f_citmlb
0.635205454
vioscreen_f_nj_citmlb
0.5306301170000001
vioscreen_f_nj_other
0.7921644240000001
vioscreen_f_nj_total
1.322794541
vioscreen_f_other
0.8948219609999999
vioscreen_f_total
1.5300274569999999
vioscreen_fat
109.2605308
vioscreen_fiber
29.32912029
vioscreen_fibh2o
7.785863923
vioscreen_fibinso
21.49339817
vioscreen_finished
12/3/14
vioscreen_fish_servings
2.73538
vioscreen_fol_deqv
637.8878425
vioscreen_fol_nat
336.987393
vioscreen_fol_syn
176.8843322
vioscreen_formontn
0.005150685
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.62283
vioscreen_frt5_day
2.3
vioscreen_frtsumm
3.1
vioscreen_fructose
40.20562125
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
6.024629441
vioscreen_g_total
8.281150337
vioscreen_g_whl
2.2564657130000003
vioscreen_galactos
0.43495888899999996
vioscreen_gammtoco
22.46465646
vioscreen_gender
false
vioscreen_genistn
0.392027345
vioscreen_glac
161.575
vioscreen_gltc
174.408658
vioscreen_glucose
39.51480094
vioscreen_glutamic
22.65326145
vioscreen_glycine
5.124849837
vioscreen_glycitn
0.06652055
vioscreen_grams
3871.902397
vioscreen_hei2010_dairy
4.7
vioscreen_hei2010_empty_calories
15.6
vioscreen_hei2010_fatty_acids
4.9
vioscreen_hei2010_fruit
3.3
vioscreen_hei2010_greens_beans
4.2
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.9
vioscreen_hei2010_score
68.7
vioscreen_hei2010_sea_foods_plant_protiens
4.9
vioscreen_hei2010_sodium
2.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
5.2
vioscreen_hei_drk_g_org_veg_leg
4.1
vioscreen_hei_fruit
3.3
vioscreen_hei_grains
4.7
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.6
vioscreen_hei_sat_fat
6.7
vioscreen_hei_score
69.0
vioscreen_hei_sodium
1.6
vioscreen_hei_sol_fat_alc_add_sug
11.7
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.6
vioscreen_height
Not provided
vioscreen_histidin
3.179315269
vioscreen_inositol
0.141698644
vioscreen_iron
17.84684691
vioscreen_isoleuc
5.142685146
vioscreen_isomalt
0.0
vioscreen_joules
12167.36712
vioscreen_juice_servings
0.41447
vioscreen_lactitol
0.0
vioscreen_lactose
12.67893033
vioscreen_legumes
0.131315059
vioscreen_leucine
8.84580747
vioscreen_line_gi
793.2880137
vioscreen_low_fat_dairy_serving
0.43948000000000004
vioscreen_lutzeax
5121.37226
vioscreen_lycopene
13540.92055
vioscreen_lysine
7.738164865
vioscreen_m_egg
0.17457534600000002
vioscreen_m_fish_hi
0.647452075
vioscreen_m_fish_lo
0.917588994
vioscreen_m_frank
0.640684948
vioscreen_m_meat
2.7992878119999998
vioscreen_m_mpf
7.509536200000001
vioscreen_m_nutsd
0.694027417
vioscreen_m_organ
0.315835613
vioscreen_m_poult
2.188739766
vioscreen_m_soy
0.020465754
vioscreen_magnes
410.1210188
vioscreen_maltitol
0.0
vioscreen_maltose
4.929369448
vioscreen_mangan
4.9527109639999995
vioscreen_mannitol
0.559862947
vioscreen_methhis3
26.04766963
vioscreen_methion
2.603315129
vioscreen_mfa141
0.166986293
vioscreen_mfa161
1.7364383230000002
vioscreen_mfa181
36.39437875
vioscreen_mfa201
0.39569861
vioscreen_mfa221
0.10421916
vioscreen_mfatot
39.17516053
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
13.74071062
vioscreen_nccglbr
237.8732877
vioscreen_nccglgr
166.4180544
vioscreen_niacin
31.06196222
vioscreen_niacineq
52.19238014
vioscreen_nitrogen
18.83605656
vioscreen_non_fried_fish_servings
2.30788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.542985974
vioscreen_oxalic
326.1863442
vioscreen_oxalicm
312.58974739999996
vioscreen_pantothe
6.411041176
vioscreen_pectins
4.358904443999999
vioscreen_pfa182
22.13942637
vioscreen_pfa183
2.137424417
vioscreen_pfa184
0.025287672999999997
vioscreen_pfa204
0.18413698399999998
vioscreen_pfa205
0.109123272
vioscreen_pfa225
0.054602740999999996
vioscreen_pfa226
0.21808220899999997
vioscreen_pfatot
25.05073844
vioscreen_phenylal
4.991424979
vioscreen_phosphor
1785.116267
vioscreen_phytic
1036.461216
vioscreen_pinitol
0.0056164380000000005
vioscreen_potass
3720.0232880000003
vioscreen_procdate
10/28/15
vioscreen_proline
7.525616037000001
vioscreen_protanim
78.08032962
vioscreen_protein
116.15663529999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
38.07453981
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
698.0
vioscreen_retinol
962.2731163999999
vioscreen_rgrain
5.34082165
vioscreen_ribofla
2.292328968
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.5618100000000001
vioscreen_satoco
0.377561637
vioscreen_selenium
183.90552230000003
vioscreen_serine
5.032493445
vioscreen_sfa100
0.61449309
vioscreen_sfa120
0.7267397529999999
vioscreen_sfa140
3.046849248
vioscreen_sfa160
19.25394371
vioscreen_sfa170
0.161972631
vioscreen_sfa180
8.71725907
vioscreen_sfa200
0.215232891
vioscreen_sfa220
0.174876717
vioscreen_sfa40
0.777917815
vioscreen_sfa60
0.401780805
vioscreen_sfa80
0.268876711
vioscreen_sfatot
34.90070366
vioscreen_sodium
5296.962329
vioscreen_sorbitol
0.7208766990000001
vioscreen_srvid
14762.0
vioscreen_starch
141.229741
vioscreen_started
12/2/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.15928767
vioscreen_sucrlose
0.0
vioscreen_sucrose
43.18027611
vioscreen_sweet_servings
2.2739700000000003
vioscreen_tagatose
2.787479432
vioscreen_tfa161t
0.084164387
vioscreen_tfa181t
3.8267939319999997
vioscreen_tfa182t
0.6452328620000001
vioscreen_tgrain
8.684903413999999
vioscreen_thiamin
2.002877013
vioscreen_threonin
4.42605549
vioscreen_time
30.0
vioscreen_totaltfa
4.635999706000001
vioscreen_totcla
0.19635618
vioscreen_totfolat
513.8714897
vioscreen_totsugar
137.35541519999998
vioscreen_tryptoph
1.268629853
vioscreen_tyrosine
3.844494127
vioscreen_user_id
14762.0
vioscreen_v_drkgr
0.360739763
vioscreen_v_orange
0.463342494
vioscreen_v_other
1.2209588040000001
vioscreen_v_potato
0.713780902
vioscreen_v_starcy
0.140657545
vioscreen_v_tomato
0.74109589
vioscreen_v_total
3.640712958
vioscreen_valine
5.780795163
vioscreen_veg5_day
4.2
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
7.3
vioscreen_visit
1.0
vioscreen_vita_iu
21081.81096
vioscreen_vita_rae
1855.9681510000003
vioscreen_vita_re
2749.661301
vioscreen_vitb12
9.684219151
vioscreen_vitb6
2.642739826
vioscreen_vitc
146.86965969999997
vioscreen_vitd
6.635560921000001
vioscreen_vitd2
0.001753425
vioscreen_vitd3
6.633835215
vioscreen_vitd_iu
265.4224369
vioscreen_vite_iu
20.8721158
vioscreen_vitk
252.6525471
vioscreen_water
3312.97363
vioscreen_weight
Not provided
vioscreen_wgrain
3.3440820980000003
vioscreen_whole_grain_servings
2.25647
vioscreen_xylitol
0.038657536
vioscreen_zinc
15.97698657
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
82.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Occasionally (1-2 times/week)