American Gut Project; 10317.000023841
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633422
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023841
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
45.0
age_corrected
45.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23841
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1970.0
bmi
24.33
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
I do not have this condition
collection date
03/10/2015
collection month
March
collection season
Spring
collection time
06:00
collection_timestamp
2015-03-10 06:00
consume_animal_products_abx
No
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegan
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Southeast
elevation
168.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
8d2f7869b3e8dd741a963cbc7942e9d87aa508cff7ba1a7ee90e97430da258f635449f0b5ee01f20b26f05a7fe3c9fc7108cf35a558444a2798810dcf0cbf7a0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
32.5
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-85.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023841
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AL
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
e7f276ac21c791ca
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.8511233809999998
vioscreen_a_cal
239.6250856
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.6142738660000004
vioscreen_addsugar
17.48032695
vioscreen_adsugtot
16.67402745
vioscreen_age
215.0
vioscreen_alanine
2.56969847
vioscreen_alcohol
28.1501097
vioscreen_alcohol_servings
1.85112
vioscreen_alphacar
3539.230822
vioscreen_alphtoce
40.12844874
vioscreen_alphtoco
22.3901113
vioscreen_arginine
3.498493017
vioscreen_ash
21.37517658
vioscreen_aspartam
0.0
vioscreen_aspartic
5.2209860610000005
vioscreen_avcarb
242.012286
vioscreen_bcodeid
Not provided
vioscreen_betacar
12961.16301
vioscreen_betacryp
173.72954840000003
vioscreen_betaine
211.76678080000002
vioscreen_betatoco
0.655506751
vioscreen_biochana
0.037260272000000004
vioscreen_bmi
Not provided
vioscreen_caffeine
256.9882277
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.10726
vioscreen_calcium_servings
1.8033700000000001
vioscreen_calories
1849.159932
vioscreen_carbo
278.5138699
vioscreen_cholest
47.97243686
vioscreen_choline
246.80757709999997
vioscreen_clac9t11
0.010438356
vioscreen_clat10c12
0.0030410959999999996
vioscreen_copper
1.596054621
vioscreen_coumest
0.5337808270000001
vioscreen_cystine
1.054739422
vioscreen_d_cheese
0.10030137199999999
vioscreen_d_milk
0.006958904
vioscreen_d_tot_soym
0.107260268
vioscreen_d_total
0.107260268
vioscreen_d_yogurt
0.0
vioscreen_daidzein
9.276686243
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.405068426
vioscreen_discfat_oil
15.04421822
vioscreen_discfat_sol
10.53657628
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.419287695
vioscreen_f_nj_citmlb
0.41726024100000003
vioscreen_f_nj_other
0.404136971
vioscreen_f_nj_total
0.82139717
vioscreen_f_other
0.995013679
vioscreen_f_total
1.414328714
vioscreen_fat
41.42824005
vioscreen_fiber
36.45942851
vioscreen_fibh2o
12.32208102
vioscreen_fibinso
24.08802708
vioscreen_finished
3/18/15
vioscreen_fish_servings
0.11596
vioscreen_fol_deqv
1145.604452
vioscreen_fol_nat
317.3096961
vioscreen_fol_syn
487.05804789999996
vioscreen_formontn
0.004082192
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.10228
vioscreen_frt5_day
1.8
vioscreen_frtsumm
2.8
vioscreen_fructose
19.97451975
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
5.124849837
vioscreen_g_total
9.08419039
vioscreen_g_whl
3.9593425589999995
vioscreen_galactos
0.15786299
vioscreen_gammtoco
10.8686296
vioscreen_gender
false
vioscreen_genistn
11.47561938
vioscreen_glac
102.01255350000001
vioscreen_gltc
114.48583049999999
vioscreen_glucose
17.12832834
vioscreen_glutamic
13.51575209
vioscreen_glycine
2.48279444
vioscreen_glycitn
1.7709041230000002
vioscreen_grams
2672.86387
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
4.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
3.9
vioscreen_hei2010_refined_grains
6.1
vioscreen_hei2010_score
75.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
4.8
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.8
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.8
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
73.9
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
19.1
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.422794541
vioscreen_inositol
0.20871233
vioscreen_iron
33.02495184
vioscreen_isoleuc
2.328492716
vioscreen_isomalt
0.0
vioscreen_joules
7736.883562000001
vioscreen_juice_servings
1.1858600000000001
vioscreen_lactitol
0.0
vioscreen_lactose
0.088000008
vioscreen_legumes
0.125041094
vioscreen_leucine
4.124273598
vioscreen_line_gi
463.9452911
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
9493.923973
vioscreen_lycopene
7513.385616
vioscreen_lysine
2.7012053189999996
vioscreen_m_egg
0.14268493699999998
vioscreen_m_fish_hi
0.016931506000000002
vioscreen_m_fish_lo
0.049150686
vioscreen_m_frank
0.0
vioscreen_m_meat
0.22553424600000002
vioscreen_m_mpf
0.569753401
vioscreen_m_nutsd
1.117999936
vioscreen_m_organ
0.0
vioscreen_m_poult
0.278136977
vioscreen_m_soy
1.284438376
vioscreen_magnes
418.84820210000004
vioscreen_maltitol
0.0
vioscreen_maltose
3.481232944
vioscreen_mangan
7.720767337000001
vioscreen_mannitol
0.407369786
vioscreen_methhis3
2.433342419
vioscreen_methion
0.936109485
vioscreen_mfa141
0.004821918
vioscreen_mfa161
0.337863013
vioscreen_mfa181
15.80227686
vioscreen_mfa201
0.162876725
vioscreen_mfa221
0.01139726
vioscreen_mfatot
16.49742616
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
9.006163715
vioscreen_nccglbr
174.9407748
vioscreen_nccglgr
122.37904540000001
vioscreen_niacin
36.89821276
vioscreen_niacineq
48.49438142
vioscreen_nitrogen
9.882027906
vioscreen_non_fried_fish_servings
0.11596
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.006191724
vioscreen_oxalic
391.1550942
vioscreen_oxalicm
383.3423373
vioscreen_pantothe
15.37487826
vioscreen_pectins
4.801506648999999
vioscreen_pfa182
11.58846586
vioscreen_pfa183
0.99093143
vioscreen_pfa184
0.000438356
vioscreen_pfa204
0.027232876
vioscreen_pfa205
0.002821918
vioscreen_pfa225
0.002246575
vioscreen_pfa226
0.009753425
vioscreen_pfatot
12.69501017
vioscreen_phenylal
2.7175072239999998
vioscreen_phosphor
1128.446661
vioscreen_phytic
1674.692808
vioscreen_pinitol
0.07791781
vioscreen_potass
3341.289726
vioscreen_procdate
10/28/15
vioscreen_proline
3.872794039
vioscreen_protanim
6.748520441
vioscreen_protein
59.03296768
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
52.28421982
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
521.0
vioscreen_retinol
309.8186644
vioscreen_rgrain
5.307260006
vioscreen_ribofla
3.203972135
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.53173
vioscreen_satoco
29.85915026
vioscreen_selenium
111.01880349999999
vioscreen_serine
2.812793638
vioscreen_sfa100
0.039369865
vioscreen_sfa120
0.06704109400000001
vioscreen_sfa140
0.265452053
vioscreen_sfa160
5.811425112
vioscreen_sfa170
0.016273973
vioscreen_sfa180
1.9273424119999998
vioscreen_sfa200
0.122356164
vioscreen_sfa220
0.199205477
vioscreen_sfa40
0.044191784000000005
vioscreen_sfa60
0.017150686000000002
vioscreen_sfa80
0.032767126
vioscreen_sfatot
8.738383588
vioscreen_sodium
3734.4222600000003
vioscreen_sorbitol
0.34610959399999996
vioscreen_srvid
18340.0
vioscreen_starch
150.9428189
vioscreen_started
3/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0.0
vioscreen_sucrose
24.17673641
vioscreen_sweet_servings
0.13151
vioscreen_tagatose
0.004821918
vioscreen_tfa161t
0.0038082190000000003
vioscreen_tfa181t
0.970164427
vioscreen_tfa182t
0.138958897
vioscreen_tgrain
10.72019277
vioscreen_thiamin
3.320850278
vioscreen_threonin
2.014684891
vioscreen_time
22.0
vioscreen_totaltfa
1.146657615
vioscreen_totcla
0.013452054
vioscreen_totfolat
804.3674658
vioscreen_totsugar
65.53446597
vioscreen_tryptoph
0.6964931540000001
vioscreen_tyrosine
1.772191881
vioscreen_user_id
18340.0
vioscreen_v_drkgr
0.51684934
vioscreen_v_orange
0.634000052
vioscreen_v_other
1.062958934
vioscreen_v_potato
0.268904093
vioscreen_v_starcy
0.17498630899999998
vioscreen_v_tomato
0.409506894
vioscreen_v_total
3.067232984
vioscreen_valine
2.713973205
vioscreen_veg5_day
5.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.1
vioscreen_visit
1.0
vioscreen_vita_iu
25730.08219
vioscreen_vita_rae
1544.622774
vioscreen_vita_re
2779.425856
vioscreen_vitb12
6.590574834
vioscreen_vitb6
3.81241037
vioscreen_vitc
182.58411819999998
vioscreen_vitd
1.414575195
vioscreen_vitd2
0.006739726
vioscreen_vitd3
1.4078629999999999
vioscreen_vitd_iu
56.58300781
vioscreen_vite_iu
43.25862853
vioscreen_vitk
418.42594180000003
vioscreen_water
2263.0761989999996
vioscreen_weight
Not provided
vioscreen_wgrain
5.412958516000001
vioscreen_whole_grain_servings
3.95934
vioscreen_xylitol
0.054109594000000004
vioscreen_zinc
22.94833048
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Regularly (3-5 times/week)