American Gut Project; 10317.000026082
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632726
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-09T19:41:32Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026082
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
33.0
age_corrected
33.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26082
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1982.0
bmi
20.39
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-20
collection month
March
collection season
Spring
collection time
07:45
collection_timestamp
2015-03-20 07:45
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
355.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
155.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
a8613d61cdc1ab1e6f7de2166e4192af6d1a91e832ea3ed44bcd9db7ce06ab3aa0bad80f1a93090df6dc6033b1f942e43407b6bbf7ffbfb6815e93395b9993ac
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
Within the past year
last_travel
Month
latitude
33.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-117.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Asian or Pacific Islander
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000026082
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
742dd17e0b018739
teethbrushing_frequency
Not provided
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.052684935
vioscreen_a_cal
6.538411012
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.57419166
vioscreen_addsugar
22.37890357
vioscreen_adsugtot
21.08791872
vioscreen_age
215.0
vioscreen_alanine
3.0467940660000004
vioscreen_alcohol
0.8206301340000001
vioscreen_alcohol_servings
0.05268
vioscreen_alphacar
2773.715753
vioscreen_alphtoce
24.25136451
vioscreen_alphtoco
22.89208048
vioscreen_arginine
4.880137655
vioscreen_ash
20.80517712
vioscreen_aspartam
0.0
vioscreen_aspartic
6.8960830479999995
vioscreen_avcarb
149.25276110000001
vioscreen_bcodeid
Not provided
vioscreen_betacar
21957.90274
vioscreen_betacryp
213.3527397
vioscreen_betaine
130.27857450000002
vioscreen_betatoco
0.618712334
vioscreen_biochana
0.015945205
vioscreen_bmi
Not provided
vioscreen_caffeine
60.88857556
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.25082
vioscreen_calcium_servings
2.87967
vioscreen_calories
1741.4013699999998
vioscreen_carbo
190.5836687
vioscreen_cholest
140.7613121
vioscreen_choline
354.2670377
vioscreen_clac9t11
0.011479451000000002
vioscreen_clat10c12
0.005780822
vioscreen_copper
2.118465727
vioscreen_coumest
0.028164382999999998
vioscreen_cystine
0.820684898
vioscreen_d_cheese
0.08438356
vioscreen_d_milk
0.059643837000000005
vioscreen_d_tot_soym
0.25082192600000003
vioscreen_d_total
0.25082192600000003
vioscreen_d_yogurt
0.106794519
vioscreen_daidzein
8.446301771
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.691835336
vioscreen_discfat_oil
60.39747967
vioscreen_discfat_sol
7.781972389
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001506849
vioscreen_f_citmlb
1.66457553
vioscreen_f_nj_citmlb
1.660849375
vioscreen_f_nj_other
1.055397347
vioscreen_f_nj_total
2.71624689
vioscreen_f_other
1.055397347
vioscreen_f_total
2.719972877
vioscreen_fat
90.94058219
vioscreen_fiber
41.33180918
vioscreen_fibh2o
8.553835349
vioscreen_fibinso
32.90698577
vioscreen_finished
3/1/15
vioscreen_fish_servings
2.07712
vioscreen_fol_deqv
536.5599315000001
vioscreen_fol_nat
529.6913955
vioscreen_fol_syn
4.034849235
vioscreen_formontn
0.007643835999999999
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
4.0
vioscreen_frtsumm
5.4
vioscreen_fructose
25.13802975
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.351780847
vioscreen_g_total
2.3297261280000003
vioscreen_g_whl
1.977945239
vioscreen_galactos
0.215068514
vioscreen_gammtoco
10.838355499999999
vioscreen_gender
false
vioscreen_genistn
10.08134364
vioscreen_glac
57.42452911
vioscreen_gltc
68.25682791
vioscreen_glucose
23.57983733
vioscreen_glutamic
11.42873903
vioscreen_glycine
2.9765203610000004
vioscreen_glycitn
1.822684845
vioscreen_grams
4362.757877
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
80.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.2
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.6
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
77.8
vioscreen_hei_sodium
1.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.8
vioscreen_height
Not provided
vioscreen_histidin
1.546054621
vioscreen_inositol
0.226986297
vioscreen_iron
14.32120746
vioscreen_isoleuc
2.5853970459999998
vioscreen_isomalt
0.0
vioscreen_joules
7286.0184930000005
vioscreen_juice_servings
0.00745
vioscreen_lactitol
0.0
vioscreen_lactose
2.578657594
vioscreen_legumes
0.38783561
vioscreen_leucine
4.461562567
vioscreen_line_gi
371.690625
vioscreen_low_fat_dairy_serving
0.10679000000000001
vioscreen_lutzeax
31089.70959
vioscreen_lycopene
3167.377055
vioscreen_lysine
3.566082513
vioscreen_m_egg
0.579945185
vioscreen_m_fish_hi
0.757698623
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.006164384
vioscreen_m_meat
0.024602741
vioscreen_m_mpf
1.214383562
vioscreen_m_nutsd
4.370904123
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.679287678
vioscreen_magnes
541.8679795
vioscreen_maltitol
0.0
vioscreen_maltose
0.989726027
vioscreen_mangan
6.749480281
vioscreen_mannitol
0.55660275
vioscreen_methhis3
4.117671099
vioscreen_methion
1.085123308
vioscreen_mfa141
0.008767123
vioscreen_mfa161
0.791862927
vioscreen_mfa181
47.21773866
vioscreen_mfa201
0.58246577
vioscreen_mfa221
0.1490411
vioscreen_mfatot
48.90074379
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
22.89208048
vioscreen_nccglbr
101.26792590000001
vioscreen_nccglgr
70.83180651
vioscreen_niacin
18.48227606
vioscreen_niacineq
31.36298427
vioscreen_nitrogen
10.95709546
vioscreen_non_fried_fish_servings
2.07712
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.745780715
vioscreen_oxalic
1042.167723
vioscreen_oxalicm
1129.277654
vioscreen_pantothe
4.506273745
vioscreen_pectins
8.735095382
vioscreen_pfa182
17.83342519
vioscreen_pfa183
1.380739395
vioscreen_pfa184
0.029150686000000002
vioscreen_pfa204
0.065561639
vioscreen_pfa205
0.09580822300000001
vioscreen_pfa225
0.034602737
vioscreen_pfa226
0.205698593
vioscreen_pfatot
19.69558942
vioscreen_phenylal
2.923260247
vioscreen_phosphor
1154.941267
vioscreen_phytic
1147.327654
vioscreen_pinitol
0.054410955
vioscreen_potass
3819.101027
vioscreen_procdate
10/28/15
vioscreen_proline
3.230685132
vioscreen_protanim
15.32282213
vioscreen_protein
65.28076841
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
49.95597175
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
536.0
vioscreen_retinol
88.42484482
vioscreen_rgrain
0.334575329
vioscreen_ribofla
1.388218961
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.98885
vioscreen_satoco
0.0
vioscreen_selenium
96.91472603
vioscreen_serine
3.2656433939999996
vioscreen_sfa100
0.065068493
vioscreen_sfa120
0.160273962
vioscreen_sfa140
0.492657471
vioscreen_sfa160
11.15983586
vioscreen_sfa170
0.030520548999999998
vioscreen_sfa180
3.17493144
vioscreen_sfa200
0.457123304
vioscreen_sfa220
0.7216438190000001
vioscreen_sfa40
0.079013699
vioscreen_sfa60
0.037671233
vioscreen_sfa80
0.03419178
vioscreen_sfatot
16.78128746
vioscreen_sodium
3131.539041
vioscreen_sorbitol
0.712328684
vioscreen_srvid
17237.0
vioscreen_starch
50.97701199
vioscreen_started
3/1/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.249454200000002
vioscreen_sweet_servings
0.15997999999999998
vioscreen_tagatose
1.177726014
vioscreen_tfa161t
0.014246576
vioscreen_tfa181t
0.36276713299999996
vioscreen_tfa182t
0.09961645
vioscreen_tgrain
2.266164283
vioscreen_thiamin
1.163616525
vioscreen_threonin
2.374328781
vioscreen_time
30.0
vioscreen_totaltfa
0.506410991
vioscreen_totcla
0.017616438
vioscreen_totfolat
533.7261986000001
vioscreen_totsugar
83.13538634
vioscreen_tryptoph
0.774410885
vioscreen_tyrosine
2.1538358509999997
vioscreen_user_id
17237.0
vioscreen_v_drkgr
2.251589255
vioscreen_v_orange
0.466219173
vioscreen_v_other
1.0371232540000002
vioscreen_v_potato
0.027178082000000003
vioscreen_v_starcy
0.148410954
vioscreen_v_tomato
0.324876717
vioscreen_v_total
4.255425273
vioscreen_valine
3.0343566060000002
vioscreen_veg5_day
7.1
vioscreen_vegetable_servings
6.0
vioscreen_vegsumm
8.5
vioscreen_visit
1.0
vioscreen_vita_iu
39380.11507
vioscreen_vita_rae
2042.710959
vioscreen_vita_re
3996.999315
vioscreen_vitb12
1.66589021
vioscreen_vitb6
2.134602419
vioscreen_vitc
247.843964
vioscreen_vitd
4.4547670969999995
vioscreen_vitd2
0.0000822
vioscreen_vitd3
4.454684824
vioscreen_vitd_iu
178.1906839
vioscreen_vite_iu
34.15643996
vioscreen_vitk
1330.8279109999999
vioscreen_water
4004.609247
vioscreen_weight
Not provided
vioscreen_wgrain
1.931588954
vioscreen_whole_grain_servings
1.97795
vioscreen_xylitol
0.077150685
vioscreen_zinc
9.720850278
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
48.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Daily