American Gut Project; 10317.000026021
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633435
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:48Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000026021
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
26021
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1968.0
bmi
21.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/06/2015
collection month
July
collection season
Summer
collection time
09:50
collection_timestamp
2015-07-06 09:50
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Well
drinks_per_session
Not provided
economic_region
Far West
elevation
18.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
144ab1a29e4866ab97caaf4e125dca4a07ac7e7a958152a2b2e69d09222dcdec58fccc07bb81918ab6db9e55044fa2d025879c3f4f157454868fa2baa51caded
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
48.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-122.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000026021
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
WA
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
904e2b68df9d4fbb
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.6127943069999997
vioscreen_addsugar
14.72063089
vioscreen_adsugtot
12.43547865
vioscreen_age
215.0
vioscreen_alanine
5.845040935
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
5751.688356000001
vioscreen_alphtoce
26.93394424
vioscreen_alphtoco
25.04276541
vioscreen_arginine
6.849644157
vioscreen_ash
24.13715218
vioscreen_aspartam
0.0
vioscreen_aspartic
11.01134217
vioscreen_avcarb
231.47746150000003
vioscreen_bcodeid
Not provided
vioscreen_betacar
43247.123289999996
vioscreen_betacryp
239.1909247
vioscreen_betaine
185.71669519999998
vioscreen_betatoco
0.515506818
vioscreen_biochana
0.026684931000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
20.24153468
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.13808
vioscreen_calcium_servings
2.50537
vioscreen_calories
2711.446918
vioscreen_carbo
275.11091610000005
vioscreen_cholest
536.5765411
vioscreen_choline
636.4949914
vioscreen_clac9t11
0.062958903
vioscreen_clat10c12
0.016602738
vioscreen_copper
4.047314788
vioscreen_coumest
0.28495891
vioscreen_cystine
1.5895614830000002
vioscreen_d_cheese
0.100082188
vioscreen_d_milk
0.038000002000000005
vioscreen_d_tot_soym
0.138082186
vioscreen_d_total
0.138082186
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.151424648
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.350794628
vioscreen_discfat_oil
75.81430329999999
vioscreen_discfat_sol
28.2084359
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002958904
vioscreen_f_citmlb
1.162273919
vioscreen_f_nj_citmlb
0.933589151
vioscreen_f_nj_other
3.109753585
vioscreen_f_nj_total
4.043396498
vioscreen_f_other
3.1817262410000002
vioscreen_f_total
4.344054005
vioscreen_fat
139.2283926
vioscreen_fiber
43.63578232
vioscreen_fibh2o
11.77114994
vioscreen_fibinso
31.92120612
vioscreen_finished
4/10/15
vioscreen_fish_servings
3.1490400000000003
vioscreen_fol_deqv
693.6050514
vioscreen_fol_nat
603.4199486
vioscreen_fol_syn
53.07068707
vioscreen_formontn
0.006109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.15342
vioscreen_frt5_day
4.4
vioscreen_frtsumm
8.7
vioscreen_fructose
34.17116064
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
3.422849556
vioscreen_g_total
4.562986275
vioscreen_g_whl
1.14013697
vioscreen_galactos
0.168465748
vioscreen_gammtoco
16.38860365
vioscreen_gender
false
vioscreen_genistn
0.16720548699999999
vioscreen_glac
114.7453125
vioscreen_gltc
128.6843643
vioscreen_glucose
26.30836098
vioscreen_glutamic
16.92676584
vioscreen_glycine
5.240603261
vioscreen_glycitn
0.029972602
vioscreen_grams
3021.764384
vioscreen_hei2010_dairy
0.4
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
79.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.3
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
2.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.2
vioscreen_hei_score
77.9
vioscreen_hei_sodium
5.1
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.4
vioscreen_height
Not provided
vioscreen_histidin
2.931589121
vioscreen_inositol
0.142712329
vioscreen_iron
18.83090218
vioscreen_isoleuc
4.927835376
vioscreen_isomalt
0.0
vioscreen_joules
11344.6911
vioscreen_juice_servings
0.60132
vioscreen_lactitol
0.0
vioscreen_lactose
0.37430135600000003
vioscreen_legumes
0.02830137
vioscreen_leucine
7.980985792999999
vioscreen_line_gi
575.940625
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
24630.46301
vioscreen_lycopene
3585.884932
vioscreen_lysine
7.704767097
vioscreen_m_egg
1.11523287
vioscreen_m_fish_hi
1.368630187
vioscreen_m_fish_lo
0.425917827
vioscreen_m_frank
0.079150683
vioscreen_m_meat
0.829315102
vioscreen_m_mpf
8.173643515
vioscreen_m_nutsd
1.085232837
vioscreen_m_organ
1.026465763
vioscreen_m_poult
4.44416437
vioscreen_m_soy
0.000986301
vioscreen_magnes
484.0513699
vioscreen_maltitol
0.0
vioscreen_maltose
5.349342158
vioscreen_mangan
5.843533282999999
vioscreen_mannitol
1.468712376
vioscreen_methhis3
26.69958797
vioscreen_methion
2.545863321
vioscreen_mfa141
0.034493154
vioscreen_mfa161
2.665260294
vioscreen_mfa181
65.85101134
vioscreen_mfa201
0.750301413
vioscreen_mfa221
0.249589058
vioscreen_mfatot
69.78124465
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
25.04276541
vioscreen_nccglbr
189.5994649
vioscreen_nccglgr
132.6139341
vioscreen_niacin
32.87158872
vioscreen_niacineq
54.02566353
vioscreen_nitrogen
17.28898759
vioscreen_non_fried_fish_servings
3.1490400000000003
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.3207670030000003
vioscreen_oxalic
1196.288955
vioscreen_oxalicm
1204.089041
vioscreen_pantothe
10.04506769
vioscreen_pectins
9.852738387999999
vioscreen_pfa182
26.28043932
vioscreen_pfa183
2.545972516
vioscreen_pfa184
0.054821918
vioscreen_pfa204
0.40063016700000004
vioscreen_pfa205
0.19260274800000002
vioscreen_pfa225
0.09567122800000001
vioscreen_pfa226
0.432602765
vioscreen_pfatot
30.34528842
vioscreen_phenylal
4.662712703
vioscreen_phosphor
1433.703425
vioscreen_phytic
961.7446917999999
vioscreen_pinitol
0.005287671
vioscreen_potass
5195.1
vioscreen_procdate
10/28/15
vioscreen_proline
4.789479211000001
vioscreen_protanim
72.90709011
vioscreen_protein
106.83272690000001
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
33.92536655
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
487.0
vioscreen_retinol
2075.9553079999996
vioscreen_rgrain
2.608657628
vioscreen_ribofla
2.558164664
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.54058
vioscreen_satoco
0.0
vioscreen_selenium
142.86396619999996
vioscreen_serine
4.6694519880000005
vioscreen_sfa100
0.054520552
vioscreen_sfa120
0.122383578
vioscreen_sfa140
0.751369863
vioscreen_sfa160
20.40440925
vioscreen_sfa170
0.051232879
vioscreen_sfa180
6.64589108
vioscreen_sfa200
0.35279453200000005
vioscreen_sfa220
0.297698619
vioscreen_sfa40
0.048356163
vioscreen_sfa60
0.019479454
vioscreen_sfa80
0.016986301999999998
vioscreen_sfatot
29.13599904
vioscreen_sodium
3879.228082
vioscreen_sorbitol
2.037616218
vioscreen_srvid
18483.0
vioscreen_starch
99.41837543
vioscreen_started
4/10/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
29.98561644
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.004520548
vioscreen_tfa161t
0.038273972999999996
vioscreen_tfa181t
1.224684875
vioscreen_tfa182t
0.24865754
vioscreen_tgrain
4.446821824
vioscreen_thiamin
1.58876719
vioscreen_threonin
4.536027464
vioscreen_time
18.0
vioscreen_totaltfa
1.538410845
vioscreen_totcla
0.079561641
vioscreen_totfolat
656.490411
vioscreen_totsugar
97.20578981
vioscreen_tryptoph
1.269917695
vioscreen_tyrosine
3.59693152
vioscreen_user_id
18483.0
vioscreen_v_drkgr
1.6867945
vioscreen_v_orange
2.151315182
vioscreen_v_other
1.3390138390000002
vioscreen_v_potato
0.38843835299999996
vioscreen_v_starcy
0.017534247
vioscreen_v_tomato
0.252767129
vioscreen_v_total
5.8359990370000006
vioscreen_valine
5.452356793
vioscreen_veg5_day
11.3
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
11.7
vioscreen_visit
1.0
vioscreen_vita_iu
83989.99452000001
vioscreen_vita_rae
5929.50274
vioscreen_vita_re
9783.050685
vioscreen_vitb12
15.84709573
vioscreen_vitb6
3.312273585
vioscreen_vitc
240.8766695
vioscreen_vitd
8.43035571
vioscreen_vitd2
0.005123288
vioscreen_vitd3
8.425232101
vioscreen_vitd_iu
337.2142284
vioscreen_vite_iu
37.36846907
vioscreen_vitk
1020.432449
vioscreen_water
2495.8496579999996
vioscreen_weight
Not provided
vioscreen_wgrain
1.8381645309999999
vioscreen_whole_grain_servings
1.14014
vioscreen_xylitol
0.05939726099999999
vioscreen_zinc
11.86016428
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
56.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never