American Gut Project; 10317.000020588
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3632930
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:27:07Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000020588
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
Not provided
alcohol_frequency
Not provided
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
20588
antibiotic_history
Week
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1953.0
bmi
16.83
bmi_cat
Underweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
No
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-26
collection month
May
collection season
Spring
collection time
08:55
collection_timestamp
2015-05-26 08:55
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Not provided
elevation
55.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
8ec1ba7a6ddf33d74e1a56f6b8b3fd05274298429dfc3041636dc85effc972ba1d64ecfbc6db52944903f44aeed58efdd13022e3a6f758f98643dbf338516bd5
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
52.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.9
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Rarely (less than once/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Never
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000020588
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
83c95df40564a876
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.00030137
vioscreen_a_cal
0.0
vioscreen_acesupot
107.3159996
vioscreen_activity_level
Not provided
vioscreen_add_sug
14.56997271
vioscreen_addsugar
36.81778146
vioscreen_adsugtot
35.07539598
vioscreen_age
215.0
vioscreen_alanine
3.19969867
vioscreen_alcohol
0.027315068999999997
vioscreen_alcohol_servings
0.0003
vioscreen_alphacar
753.5845034
vioscreen_alphtoce
39.18712008
vioscreen_alphtoco
22.66194349
vioscreen_arginine
4.148904377
vioscreen_ash
21.63846452
vioscreen_aspartam
107.3159996
vioscreen_aspartic
7.456437955
vioscreen_avcarb
176.2550621
vioscreen_bcodeid
Not provided
vioscreen_betacar
5540.359589
vioscreen_betacryp
214.20083480000002
vioscreen_betaine
173.61747649999998
vioscreen_betatoco
0.389945169
vioscreen_biochana
0.049726026
vioscreen_bmi
Not provided
vioscreen_caffeine
71.61783497
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.78912
vioscreen_calcium_servings
4.55499
vioscreen_calories
1577.802568
vioscreen_carbo
210.8124358
vioscreen_cholest
38.81679152
vioscreen_choline
321.3802654
vioscreen_clac9t11
0.014438356000000001
vioscreen_clat10c12
0.0017260270000000002
vioscreen_copper
2.4045480390000002
vioscreen_coumest
0.008575343000000001
vioscreen_cystine
1.004876542
vioscreen_d_cheese
0.019835616
vioscreen_d_milk
1.698273959
vioscreen_d_tot_soym
1.789123368
vioscreen_d_total
1.789123368
vioscreen_d_yogurt
0.0
vioscreen_daidzein
6.08062995
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.51597265
vioscreen_discfat_oil
43.07581603
vioscreen_discfat_sol
6.393232957
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0007945210000000001
vioscreen_f_citmlb
0.12726026599999998
vioscreen_f_nj_citmlb
0.12726026599999998
vioscreen_f_nj_other
0.301287675
vioscreen_f_nj_total
0.42854794
vioscreen_f_other
0.301287675
vioscreen_f_total
0.42854794
vioscreen_fat
51.64846426
vioscreen_fiber
34.55890411
vioscreen_fibh2o
8.503999893
vioscreen_fibinso
26.23194563
vioscreen_finished
5/22/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
805.1780822000001
vioscreen_fol_nat
472.9193921
vioscreen_fol_syn
195.4366866
vioscreen_formontn
0.0055890409999999995
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
10.40106753
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
3.600328754
vioscreen_g_total
5.680411226
vioscreen_g_whl
2.080082305
vioscreen_galactos
0.153095872
vioscreen_gammtoco
10.38873876
vioscreen_gender
false
vioscreen_genistn
9.356081442999999
vioscreen_glac
72.09917594
vioscreen_gltc
85.31479024
vioscreen_glucose
9.336107395
vioscreen_glutamic
15.49750776
vioscreen_glycine
2.592027304
vioscreen_glycitn
1.839589075
vioscreen_grams
4472.10274
vioscreen_hei2010_dairy
8.7
vioscreen_hei2010_empty_calories
19.9
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
1.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
8.1
vioscreen_hei2010_score
80.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.4
vioscreen_hei2010_whole_grains
8.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.7
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.7
vioscreen_hei_non_juice_frt
3.4
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
83.2
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
4.4
vioscreen_height
Not provided
vioscreen_histidin
1.932712335
vioscreen_inositol
0.11309588699999999
vioscreen_iron
23.1443841
vioscreen_isoleuc
3.509425166
vioscreen_isomalt
0.0
vioscreen_joules
6601.523288
vioscreen_juice_servings
0.0
vioscreen_lactitol
0.0
vioscreen_lactose
24.47838453
vioscreen_legumes
0.583671214
vioscreen_leucine
6.154767765
vioscreen_line_gi
356.5815925
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
5352.164384000001
vioscreen_lycopene
3861.5664380000003
vioscreen_lysine
5.045068359
vioscreen_m_egg
0.148438357
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.19841095399999997
vioscreen_m_mpf
0.19841095399999997
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
3.317369769
vioscreen_magnes
510.2307791
vioscreen_maltitol
0.0
vioscreen_maltose
3.037233118
vioscreen_mangan
6.381973058
vioscreen_mannitol
0.327178077
vioscreen_methhis3
1.175616455
vioscreen_methion
1.3480549019999999
vioscreen_mfa141
0.018657534
vioscreen_mfa161
0.41895894100000003
vioscreen_mfa181
27.58249411
vioscreen_mfa201
0.258520529
vioscreen_mfa221
0.000821918
vioscreen_mfatot
28.3312607
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
10.130381800000002
vioscreen_nccglbr
150.3782962
vioscreen_nccglgr
105.16959550000001
vioscreen_niacin
25.00309825
vioscreen_niacineq
41.51994328
vioscreen_nitrogen
12.9133963
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.648739833
vioscreen_oxalic
293.0753425
vioscreen_oxalicm
336.4324272
vioscreen_pantothe
9.430848673
vioscreen_pectins
4.273013431
vioscreen_pfa182
9.599535129
vioscreen_pfa183
1.647205593
vioscreen_pfa184
0.0
vioscreen_pfa204
0.015972603000000002
vioscreen_pfa205
0.000273973
vioscreen_pfa225
0.000027399999999999995
vioscreen_pfa226
0.001260274
vioscreen_pfatot
11.32117937
vioscreen_phenylal
3.621369997
vioscreen_phosphor
1506.814726
vioscreen_phytic
1056.112586
vioscreen_pinitol
0.086602736
vioscreen_potass
3235.6801370000003
vioscreen_procdate
10/28/15
vioscreen_proline
5.028630672
vioscreen_protanim
28.30493097
vioscreen_protein
80.07719392
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
51.77414919
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
432.0
vioscreen_retinol
1045.117551
vioscreen_rgrain
2.073123294
vioscreen_ribofla
2.018602847
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.7515900000000002
vioscreen_satoco
27.84687768
vioscreen_selenium
93.5046768
vioscreen_serine
3.881615876
vioscreen_sfa100
0.10375343199999999
vioscreen_sfa120
0.08353425099999999
vioscreen_sfa140
0.32301368199999997
vioscreen_sfa160
5.859314801
vioscreen_sfa170
0.034958905
vioscreen_sfa180
1.971945065
vioscreen_sfa200
0.18717808100000002
vioscreen_sfa220
0.100027403
vioscreen_sfa40
0.069863014
vioscreen_sfa60
0.039917807
vioscreen_sfa80
0.087561641
vioscreen_sfatot
8.936274615
vioscreen_sodium
3843.857534
vioscreen_sorbitol
0.255232887
vioscreen_srvid
18742.0
vioscreen_starch
77.01755672
vioscreen_started
5/22/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
38.38794681
vioscreen_sweet_servings
0.06575
vioscreen_tagatose
7.824109722999999
vioscreen_tfa161t
0.015616438
vioscreen_tfa181t
1.077643742
vioscreen_tfa182t
0.148301383
vioscreen_tgrain
3.8757257330000003
vioscreen_thiamin
3.3546848239999996
vioscreen_threonin
3.026822025
vioscreen_time
17.0
vioscreen_totaltfa
1.3723288340000002
vioscreen_totcla
0.016712328999999998
vioscreen_totfolat
668.3560788
vioscreen_totsugar
85.98525257
vioscreen_tryptoph
0.9909588540000001
vioscreen_tyrosine
2.641041377
vioscreen_user_id
18742.0
vioscreen_v_drkgr
0.611835637
vioscreen_v_orange
0.15334245900000001
vioscreen_v_other
1.713040955
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.45860273799999995
vioscreen_v_tomato
0.289178091
vioscreen_v_total
3.226000308
vioscreen_valine
3.9880270760000003
vioscreen_veg5_day
6.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
6.0
vioscreen_visit
1.0
vioscreen_vita_iu
13523.75342
vioscreen_vita_rae
1547.139384
vioscreen_vita_re
2049.1623289999998
vioscreen_vitb12
6.293506527999999
vioscreen_vitb6
2.391205586
vioscreen_vitc
214.2232663
vioscreen_vitd
8.446876338
vioscreen_vitd2
0.039068494
vioscreen_vitd3
8.407807818
vioscreen_vitd_iu
337.87505350000004
vioscreen_vite_iu
42.94448844
vioscreen_vitk
286.7203767
vioscreen_water
4095.0297950000004
vioscreen_weight
Not provided
vioscreen_wgrain
1.802602773
vioscreen_whole_grain_servings
2.0800799999999997
vioscreen_xylitol
0.018986302
vioscreen_zinc
15.52495987
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
41.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Daily