American Gut Project; 10317.000030954
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634217
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030954
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
70.0
age_corrected
70.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030954
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1945.0
bmi
31.18
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-15
collection month
July
collection season
Summer
collection time
11:00
collection_timestamp
2015-07-15 11:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
true
dominant hand
I am left handed
drinking_water_source
Bottled
drinks_per_session
Not provided
economic_region
Far West
elevation
355.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
346dead301ee14750b312dbde0cabd49dedda6dea1110a7a15438fa187e32348e7219ec378700a2742517ff5af7b940dbccfdf10f47531100afde963cd8a4888
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
33.1
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-117.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
Not provided
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Never
pregnant
Not provided
prepared_meals_frequency
Never
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030954
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
e1cf7240a9bd6f6c
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.157260278
vioscreen_a_cal
19.38684985
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
37.51819082
vioscreen_addsugar
198.36444780000002
vioscreen_adsugtot
156.9538099
vioscreen_age
215.0
vioscreen_alanine
3.5130136989999996
vioscreen_alcohol
2.588822038
vioscreen_alcohol_servings
0.15725999999999998
vioscreen_alphacar
612.7235017
vioscreen_alphtoce
10.44424363
vioscreen_alphtoco
8.562491973
vioscreen_arginine
3.8618358039999996
vioscreen_ash
18.91470864
vioscreen_aspartam
242.95721319999998
vioscreen_aspartic
7.167836312
vioscreen_avcarb
369.0393836
vioscreen_bcodeid
Not provided
vioscreen_betacar
2611.4535960000003
vioscreen_betacryp
10.36602767
vioscreen_betaine
178.05478380000002
vioscreen_betatoco
0.364136955
vioscreen_biochana
0.004821917
vioscreen_bmi
Not provided
vioscreen_caffeine
434.98707189999993
vioscreen_calcium
true
vioscreen_calcium_avg
1000.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
4.541919999999999
vioscreen_calcium_servings
6.23307
vioscreen_calories
2584.296747
vioscreen_carbo
381.0377568
vioscreen_cholest
188.17354450000002
vioscreen_choline
368.79190919999996
vioscreen_clac9t11
0.085041088
vioscreen_clat10c12
0.011780822
vioscreen_copper
1.214684808
vioscreen_coumest
0.068027397
vioscreen_cystine
0.993945145
vioscreen_d_cheese
0.284246575
vioscreen_d_milk
3.956438289
vioscreen_d_tot_soym
4.541917608
vioscreen_d_total
4.541917608
vioscreen_d_yogurt
0.284821915
vioscreen_daidzein
0.124027409
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.23978121
vioscreen_discfat_oil
30.70928671
vioscreen_discfat_sol
38.31838346
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0004931509999999999
vioscreen_f_citmlb
0.2239452
vioscreen_f_nj_citmlb
0.221698625
vioscreen_f_nj_other
0.20884930300000001
vioscreen_f_nj_total
0.43106848299999995
vioscreen_f_other
0.20884930300000001
vioscreen_f_total
0.433315079
vioscreen_fat
83.9315336
vioscreen_fiber
11.93553484
vioscreen_fibh2o
4.111753197
vioscreen_fibinso
7.714630378
vioscreen_finished
7/14/15
vioscreen_fish_servings
0.40731
vioscreen_fol_deqv
530.8998716
vioscreen_fol_nat
225.74351459999997
vioscreen_fol_syn
179.5041417
vioscreen_formontn
0.001232877
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
0.9
vioscreen_fructose
30.72939587
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
7.288793611
vioscreen_g_total
7.499450851000001
vioscreen_g_whl
0.210657533
vioscreen_galactos
2.016821958
vioscreen_gammtoco
17.04567102
vioscreen_gender
false
vioscreen_genistn
0.146465761
vioscreen_glac
187.19389980000003
vioscreen_gltc
192.98951200000002
vioscreen_glucose
38.55227151
vioscreen_glutamic
18.89723218
vioscreen_glycine
2.8981368389999997
vioscreen_glycitn
0.001123288
vioscreen_grams
4080.2924659999994
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
7.9
vioscreen_hei2010_fatty_acids
5.4
vioscreen_hei2010_fruit
1.0
vioscreen_hei2010_greens_beans
0.9
vioscreen_hei2010_protien_foods
3.1
vioscreen_hei2010_refined_grains
5.9
vioscreen_hei2010_score
51.5
vioscreen_hei2010_sea_foods_plant_protiens
3.9
vioscreen_hei2010_sodium
9.9
vioscreen_hei2010_veg
0.9
vioscreen_hei2010_whole_fruit
2.1
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
1.1
vioscreen_hei_fruit
1.0
vioscreen_hei_grains
4.8
vioscreen_hei_meat_beans
6.1
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
2.1
vioscreen_hei_oils
9.9
vioscreen_hei_sat_fat
8.4
vioscreen_hei_score
60.2
vioscreen_hei_sodium
7.9
vioscreen_hei_sol_fat_alc_add_sug
7.7
vioscreen_hei_veg
0.9
vioscreen_hei_whl_grains
0.3
vioscreen_height
Not provided
vioscreen_histidin
2.367315256
vioscreen_inositol
0.093424664
vioscreen_iron
12.7828232
vioscreen_isoleuc
4.027123355
vioscreen_isomalt
0.0
vioscreen_joules
10812.70685
vioscreen_juice_servings
0.00455
vioscreen_lactitol
0.0
vioscreen_lactose
55.53753746
vioscreen_legumes
0.03328767
vioscreen_leucine
7.122301744
vioscreen_line_gi
695.9396404
vioscreen_low_fat_dairy_serving
4.08866
vioscreen_lutzeax
1359.176284
vioscreen_lycopene
172.6664598
vioscreen_lysine
5.860384337999999
vioscreen_m_egg
0.223671252
vioscreen_m_fish_hi
0.163780819
vioscreen_m_fish_lo
0.06838355900000001
vioscreen_m_frank
0.0
vioscreen_m_meat
0.923698613
vioscreen_m_mpf
2.346821824
vioscreen_m_nutsd
1.240246582
vioscreen_m_organ
0.0
vioscreen_m_poult
1.190931514
vioscreen_m_soy
0.005479451999999999
vioscreen_magnes
372.2690497
vioscreen_maltitol
0.0
vioscreen_maltose
11.63953339
vioscreen_mangan
5.448438169
vioscreen_mannitol
0.069561647
vioscreen_methhis3
8.599835456000001
vioscreen_methion
2.000410859
vioscreen_mfa141
0.129315081
vioscreen_mfa161
0.8107398459999999
vioscreen_mfa181
32.770957300000006
vioscreen_mfa201
0.400438324
vioscreen_mfa221
0.036931506
vioscreen_mfatot
34.27410638
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
8.562491973
vioscreen_nccglbr
344.3619221
vioscreen_nccglgr
240.8684932
vioscreen_niacin
20.36750722
vioscreen_niacineq
37.47216663
vioscreen_nitrogen
13.94339683
vioscreen_non_fried_fish_servings
0.40731
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.402657287
vioscreen_oxalic
250.41003849999998
vioscreen_oxalicm
264.5272902
vioscreen_pantothe
6.2613970189999995
vioscreen_pectins
1.328328673
vioscreen_pfa182
14.86194483
vioscreen_pfa183
2.287040648
vioscreen_pfa184
0.007123287
vioscreen_pfa204
0.08843835300000001
vioscreen_pfa205
0.027506852000000002
vioscreen_pfa225
0.016876713
vioscreen_pfa226
0.064109588
vioscreen_pfatot
17.40630084
vioscreen_phenylal
4.132328566
vioscreen_phosphor
1761.3729449999998
vioscreen_phytic
469.3943493
vioscreen_pinitol
0.12758904
vioscreen_potass
3396.932877
vioscreen_procdate
10/28/15
vioscreen_proline
7.197534514
vioscreen_protanim
60.25993151
vioscreen_protein
86.00643729
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.74112265
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
292.0
vioscreen_retinol
835.752226
vioscreen_rgrain
7.302246762999999
vioscreen_ribofla
3.2980274780000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.14619000000000001
vioscreen_satoco
0.0
vioscreen_selenium
126.3397688
vioscreen_serine
4.515698577
vioscreen_sfa100
0.671808238
vioscreen_sfa120
2.831260368
vioscreen_sfa140
2.576027564
vioscreen_sfa160
12.2964108
vioscreen_sfa170
0.088136981
vioscreen_sfa180
6.694218884
vioscreen_sfa200
0.241123294
vioscreen_sfa220
0.27101369399999997
vioscreen_sfa40
0.384027434
vioscreen_sfa60
0.25298629100000003
vioscreen_sfa80
0.48082191799999996
vioscreen_sfatot
27.15591556
vioscreen_sodium
2867.016781
vioscreen_sorbitol
0.39523290299999997
vioscreen_srvid
20150.0
vioscreen_starch
92.29988228
vioscreen_started
7/14/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
88.47728489
vioscreen_sweet_servings
2.2411
vioscreen_tagatose
3.208383388
vioscreen_tfa161t
0.022904109
vioscreen_tfa181t
3.587369903
vioscreen_tfa182t
0.399835623
vioscreen_tgrain
7.45567142
vioscreen_thiamin
1.661808212
vioscreen_threonin
3.357315189
vioscreen_time
22.0
vioscreen_totaltfa
4.031808848
vioscreen_totcla
0.09616437900000001
vioscreen_totfolat
405.2472175
vioscreen_totsugar
227.66342039999998
vioscreen_tryptoph
1.026273963
vioscreen_tyrosine
3.441041377
vioscreen_user_id
20150.0
vioscreen_v_drkgr
0.096465751
vioscreen_v_orange
0.13706849
vioscreen_v_other
0.139479452
vioscreen_v_potato
0.100630136
vioscreen_v_starcy
0.0020273970000000002
vioscreen_v_tomato
0.010986302
vioscreen_v_total
0.48668497200000005
vioscreen_valine
4.807123221
vioscreen_veg5_day
0.8
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
1.0
vioscreen_visit
1.0
vioscreen_vita_iu
7650.763698999999
vioscreen_vita_rae
1079.336301
vioscreen_vita_re
1322.919692
vioscreen_vitb12
6.240712622999999
vioscreen_vitb6
1.144684925
vioscreen_vitc
28.47032855
vioscreen_vitd
12.88802841
vioscreen_vitd2
0.000876712
vioscreen_vitd3
12.88717894
vioscreen_vitd_iu
515.5211366000001
vioscreen_vite_iu
12.73268408
vioscreen_vitk
99.44035745
vioscreen_water
3551.6503420000004
vioscreen_weight
Not provided
vioscreen_wgrain
0.15342465800000002
vioscreen_whole_grain_servings
0.21066
vioscreen_xylitol
0.017041095
vioscreen_zinc
11.53008214
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
79.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Occasionally (1-2 times/week)