Seawater sample Sylt, 2012-07-19
seawater metagenome
seawater sample taken near the oyster reef at low tide; temperature and salinity measured at a nearby site by ship Mya IIl
ENA first public
2016-06-29
ENA last update
2016-10-21
External Id
SAMEA3462819
INSDC center alias
ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE
INSDC center name
ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE
INSDC first public
2016-06-29T17:01:55Z
INSDC last update
2016-10-21T09:44:06Z
INSDC status
public
Submitter Id
SW_Sylt_20120719
ammonium
1.78
chlorophyll
3.7
collection date
2012-07-19
dissolved organic nitrogen
12.8157
environment (biome)
aquatic, marine, benthic, coastal
environment (feature)
oyster reef
environment (material)
environmental material, water, seawater
geographic location (country and/or sea)
North Sea
geographic location (depth)
0.5
geographic location (latitude)
55.02919
geographic location (longitude)
8.434186
investigation type
mimarks-survey
multiplex identifiers
f: TTGCAAGC; r: CGTTGGAT
nitrate
1.221
nitrite
0.075
pcr conditions
initial denaturation:98degC_30s; denaturation:98degC_9s;annealing:55degC_1min; elongation:72degC_90s; final elongation:72degC_10min; 30 cycles
pcr primers
27f-338r
pcr primers
27F: TCAGAGTTTGATCMTGGCTCAG + 338r: CATGCTGCCTCCCGTAGGAGT
ph
8.15
phosphate
0.25
project name
PRJEB9624
salinity
29.79851331
sample name
SW_Sylt_20120719
sample volume or weight for DNA extraction
100
sequencing method
Sequencing by synthesis, Illumina paired-end
silicate
1.21
suspended particulate matter
7.42
target gene
16s rRNA
target subfragment
V1-V2
temperature
17.112
total dissolved nitrogen
16.17
water environmental package
water