American Gut Project; 10317.000031311
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634292
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:29Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000031311
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
70+
age years
73.0
age_corrected
73.0
alcohol consumption
true
alcohol_frequency
Daily
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000031311
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1942.0
bmi
23.67
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Less than one
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
08/03/2015
collection month
August
collection season
Summer
collection time
09:15
collection_timestamp
2015-08-03 09:15
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
31.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
c43b2b1f69e6f68b6fe3be50b94a49d815e20603c3de65c9ee95340f71362ff7f117cc881cd8775b33f083eb78e1c1462eb241828a8b7b4bfed06d66c91697f3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
37.0
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-121.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000031311
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
0085eaa13a3c8236
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Not sure
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.5942466419999999
vioscreen_a_cal
199.0262414
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.72101349
vioscreen_addsugar
57.55972817
vioscreen_adsugtot
46.82383348
vioscreen_age
215.0
vioscreen_alanine
4.878767123
vioscreen_alcohol
24.92605683
vioscreen_alcohol_servings
1.59425
vioscreen_alphacar
938.0605308
vioscreen_alphtoce
7.381643301
vioscreen_alphtoco
7.050712356
vioscreen_arginine
5.217232649
vioscreen_ash
20.41879281
vioscreen_aspartam
0.0
vioscreen_aspartic
8.534821811
vioscreen_avcarb
153.49084969999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
6593.378767
vioscreen_betacryp
265.63234159999996
vioscreen_betaine
70.77451841
vioscreen_betatoco
0.09720547800000001
vioscreen_biochana
0.005945206
vioscreen_bmi
Not provided
vioscreen_caffeine
238.14130989999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.2134
vioscreen_calcium_servings
3.0057
vioscreen_calories
1724.7491440000001
vioscreen_carbo
176.01384850000002
vioscreen_cholest
480.85770549999995
vioscreen_choline
565.1974315
vioscreen_clac9t11
0.138356175
vioscreen_clat10c12
0.032876715
vioscreen_copper
2.177040915
vioscreen_coumest
0.18227396899999998
vioscreen_cystine
1.159890287
vioscreen_d_cheese
0.292931502
vioscreen_d_milk
0.422027379
vioscreen_d_tot_soym
1.213397217
vioscreen_d_total
1.213397217
vioscreen_d_yogurt
0.49843833600000004
vioscreen_daidzein
0.349726011
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.7
vioscreen_discfat_oil
6.712302012
vioscreen_discfat_sol
31.29002836
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
1.313013699
vioscreen_f_nj_citmlb
1.305589065
vioscreen_f_nj_other
1.043890464
vioscreen_f_nj_total
2.349534293
vioscreen_f_other
1.043890464
vioscreen_f_total
2.356958844
vioscreen_fat
59.23007813
vioscreen_fiber
22.45172838
vioscreen_fibh2o
8.313616357999999
vioscreen_fibinso
14.17762067
vioscreen_finished
7/29/15
vioscreen_fish_servings
4.15404
vioscreen_fol_deqv
596.5964468999999
vioscreen_fol_nat
342.0417808
vioscreen_fol_syn
149.7307898
vioscreen_formontn
0.005068493
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
3.0
vioscreen_frtsumm
4.7
vioscreen_fructose
24.49328714
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
0.212684945
vioscreen_g_total
1.225616539
vioscreen_g_whl
1.012931427
vioscreen_galactos
0.847890357
vioscreen_gammtoco
2.688411012
vioscreen_gender
false
vioscreen_genistn
0.337780804
vioscreen_glac
64.37522474
vioscreen_gltc
71.53926049
vioscreen_glucose
23.81758883
vioscreen_glutamic
14.90046554
vioscreen_glycine
4.245507143999999
vioscreen_glycitn
0.043561645
vioscreen_grams
3288.082534
vioscreen_hei2010_dairy
5.4
vioscreen_hei2010_empty_calories
13.4
vioscreen_hei2010_fatty_acids
1.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
68.4
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
3.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
1.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.4
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
3.2
vioscreen_hei_sat_fat
5.1
vioscreen_hei_score
58.5
vioscreen_hei_sodium
3.8
vioscreen_hei_sol_fat_alc_add_sug
7.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
2.6257259
vioscreen_inositol
0.222849305
vioscreen_iron
16.60503933
vioscreen_isoleuc
4.182191446
vioscreen_isomalt
0.0
vioscreen_joules
7216.350684999999
vioscreen_juice_servings
0.014819999999999998
vioscreen_lactitol
0.0
vioscreen_lactose
15.54504227
vioscreen_legumes
0.0
vioscreen_leucine
7.231096158
vioscreen_line_gi
339.5178296
vioscreen_low_fat_dairy_serving
0.49843999999999994
vioscreen_lutzeax
8131.077397
vioscreen_lycopene
3368.5777399999997
vioscreen_lysine
7.11424711
vioscreen_m_egg
1.00813699
vioscreen_m_fish_hi
1.515397247
vioscreen_m_fish_lo
0.8518629940000001
vioscreen_m_frank
1.141315115
vioscreen_m_meat
3.4683560310000003
vioscreen_m_mpf
7.5634518139999996
vioscreen_m_nutsd
0.040136985
vioscreen_m_organ
0.586547935
vioscreen_m_poult
0.0
vioscreen_m_soy
0.011178081999999999
vioscreen_magnes
321.45425939999996
vioscreen_maltitol
0.0
vioscreen_maltose
2.266164283
vioscreen_mangan
3.0342191510000003
vioscreen_mannitol
0.54339725
vioscreen_methhis3
26.23838292
vioscreen_methion
2.278273825
vioscreen_mfa141
0.11046576300000001
vioscreen_mfa161
1.5787671230000002
vioscreen_mfa181
20.80742589
vioscreen_mfa201
0.33520545399999996
vioscreen_mfa221
0.245369877
vioscreen_mfatot
23.22682203
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.035972951000001
vioscreen_nccglbr
113.2306293
vioscreen_nccglgr
79.20698309
vioscreen_niacin
22.22882197
vioscreen_niacineq
37.57747485
vioscreen_nitrogen
14.46161441
vioscreen_non_fried_fish_servings
4.15404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.5853427
vioscreen_oxalic
294.71423369999997
vioscreen_oxalicm
318.8859375
vioscreen_pantothe
7.60317851
vioscreen_pectins
4.565507612
vioscreen_pfa182
4.916903561
vioscreen_pfa183
0.840411043
vioscreen_pfa184
0.056630137000000004
vioscreen_pfa204
0.22578081100000003
vioscreen_pfa205
0.198219195
vioscreen_pfa225
0.080958902
vioscreen_pfa226
0.410712339
vioscreen_pfatot
6.933726188
vioscreen_phenylal
3.909397073
vioscreen_phosphor
1408.271747
vioscreen_phytic
332.1662671
vioscreen_pinitol
0.012849315
vioscreen_potass
3611.262671
vioscreen_procdate
10/28/15
vioscreen_proline
4.840273839
vioscreen_protanim
76.53329409
vioscreen_protein
90.2708048
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
13.73087409
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
250.0
vioscreen_retinol
1499.8198630000002
vioscreen_rgrain
0.44090413100000003
vioscreen_ribofla
2.873013766
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.0815599999999996
vioscreen_satoco
0.032328768
vioscreen_selenium
116.85374569999999
vioscreen_serine
4.121945232
vioscreen_sfa100
0.443780852
vioscreen_sfa120
0.46646578
vioscreen_sfa140
2.244931574
vioscreen_sfa160
12.61799952
vioscreen_sfa170
0.062958908
vioscreen_sfa180
5.554356071
vioscreen_sfa200
0.050794523
vioscreen_sfa220
0.025452055
vioscreen_sfa40
0.49624658899999996
vioscreen_sfa60
0.278027386
vioscreen_sfa80
0.181205478
vioscreen_sfatot
22.6464924
vioscreen_sodium
2716.7638699999998
vioscreen_sorbitol
0.6761917740000001
vioscreen_srvid
20269.0
vioscreen_starch
23.941149399999997
vioscreen_started
7/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.37536922
vioscreen_sweet_servings
1.0921399999999999
vioscreen_tagatose
4.564794587
vioscreen_tfa161t
0.08054794900000001
vioscreen_tfa181t
1.276712329
vioscreen_tfa182t
0.263479447
vioscreen_tgrain
1.6195891080000002
vioscreen_thiamin
1.380438483
vioscreen_threonin
3.707369702
vioscreen_time
20.0
vioscreen_totaltfa
1.677150779
vioscreen_totcla
0.17273973399999998
vioscreen_totfolat
491.77221749999995
vioscreen_totsugar
109.8021939
vioscreen_tryptoph
0.921342489
vioscreen_tyrosine
3.216575476
vioscreen_user_id
20269.0
vioscreen_v_drkgr
0.562794557
vioscreen_v_orange
0.131178075
vioscreen_v_other
0.9362739459999999
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.11643835599999999
vioscreen_v_tomato
0.56945203
vioscreen_v_total
2.316137026
vioscreen_valine
4.8605204539999995
vioscreen_veg5_day
4.0
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
16993.92466
vioscreen_vita_rae
2099.421918
vioscreen_vita_re
2699.025514
vioscreen_vitb12
14.56520762
vioscreen_vitb6
2.357315022
vioscreen_vitc
172.92549230000003
vioscreen_vitd
11.09194537
vioscreen_vitd2
0.0
vioscreen_vitd3
11.09194537
vioscreen_vitd_iu
443.6778146000001
vioscreen_vite_iu
10.49580613
vioscreen_vitk
309.65635699999996
vioscreen_water
2931.535616
vioscreen_weight
Not provided
vioscreen_wgrain
1.178657427
vioscreen_whole_grain_servings
1.0129299999999999
vioscreen_xylitol
0.074356168
vioscreen_zinc
14.07753371
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
74.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)