American Gut Project; 10317.000029580
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634068
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:17Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029580
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
44.0
age_corrected
44.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
29580
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1971.0
bmi
23.41
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-07-14
collection month
July
collection season
Summer
collection time
09:30
collection_timestamp
2015-07-14 09:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Vegetarian
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
18.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
179.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
38cba69c20baf56a1496dbe7b066bbbe9fe1faac7641a05e5f2a7c7fc712a608651e5fd0c6cfaefa249f5fb1ac5a688af7693d8bf8e21b84c27f558cbbf924e6
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
52.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-3.8
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Occasionally (1-2 times/week)
poultry_frequency
Never
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Never
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000029580
sample type
Stool
seafood_frequency
Never
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
9c7dc0eee746ad6a
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.08082191799999999
vioscreen_a_cal
9.569397474
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.33016441
vioscreen_addsugar
20.69775524
vioscreen_adsugtot
19.52460269
vioscreen_age
215.0
vioscreen_alanine
2.677589228
vioscreen_alcohol
1.2055068759999998
vioscreen_alcohol_servings
0.08082
vioscreen_alphacar
1331.0519689999999
vioscreen_alphtoce
18.50408417
vioscreen_alphtoco
16.59032802
vioscreen_arginine
4.345260662
vioscreen_ash
20.13060386
vioscreen_aspartam
0.0
vioscreen_aspartic
6.959425835
vioscreen_avcarb
194.5275471
vioscreen_bcodeid
Not provided
vioscreen_betacar
8996.880137
vioscreen_betacryp
269.311708
vioscreen_betaine
75.75134311
vioscreen_betatoco
0.668410879
vioscreen_biochana
0.023150687000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
621.5364726
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.51266
vioscreen_calcium_servings
2.1032900000000003
vioscreen_calories
1875.514555
vioscreen_carbo
229.46363440000002
vioscreen_cholest
219.04417809999998
vioscreen_choline
384.1569349
vioscreen_clac9t11
0.029068497000000002
vioscreen_clat10c12
0.009671233000000001
vioscreen_copper
2.216246388
vioscreen_coumest
0.185205475
vioscreen_cystine
1.000958837
vioscreen_d_cheese
0.068246575
vioscreen_d_milk
0.052794522
vioscreen_d_tot_soym
0.512657563
vioscreen_d_total
0.512657563
vioscreen_d_yogurt
0.391616445
vioscreen_daidzein
4.554576132
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.266684503
vioscreen_discfat_oil
52.86254816
vioscreen_discfat_sol
12.45920511
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0014246570000000002
vioscreen_f_citmlb
0.59216434
vioscreen_f_nj_citmlb
0.44978081700000005
vioscreen_f_nj_other
1.125397397
vioscreen_f_nj_total
1.575178089
vioscreen_f_other
1.125397397
vioscreen_f_total
1.7175617369999998
vioscreen_fat
87.92428296
vioscreen_fiber
34.85104078
vioscreen_fibh2o
11.44350519
vioscreen_fibinso
23.44523759
vioscreen_finished
7/13/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
509.75505139999996
vioscreen_fol_nat
471.440625
vioscreen_fol_syn
22.54747967
vioscreen_formontn
0.006328767
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.3799
vioscreen_frt5_day
2.2
vioscreen_frtsumm
3.4
vioscreen_fructose
17.56120505
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
1.094849302
vioscreen_g_total
4.537150845
vioscreen_g_whl
3.4423015439999998
vioscreen_galactos
0.633862974
vioscreen_gammtoco
15.06772929
vioscreen_gender
false
vioscreen_genistn
5.803945714
vioscreen_glac
90.91220034
vioscreen_gltc
103.6620505
vioscreen_glucose
16.71997405
vioscreen_glutamic
11.68838426
vioscreen_glycine
2.634192229
vioscreen_glycitn
1.022575483
vioscreen_grams
6012.391781
vioscreen_hei2010_dairy
2.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
85.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.7
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
4.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
2.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.9
vioscreen_hei_score
83.0
vioscreen_hei_sodium
3.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
1.42024695
vioscreen_inositol
0.134027413
vioscreen_iron
12.94912243
vioscreen_isoleuc
2.458383388
vioscreen_isomalt
0.0
vioscreen_joules
7847.150685
vioscreen_juice_servings
0.28474
vioscreen_lactitol
0.0
vioscreen_lactose
6.375014046
vioscreen_legumes
0.252767129
vioscreen_leucine
4.439588907
vioscreen_line_gi
453.54717469999997
vioscreen_low_fat_dairy_serving
0.39161999999999997
vioscreen_lutzeax
7286.579452
vioscreen_lycopene
3642.428425
vioscreen_lysine
3.186082312
vioscreen_m_egg
1.034986355
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.040794521
vioscreen_m_mpf
0.097863017
vioscreen_m_nutsd
4.355616572
vioscreen_m_organ
0.0
vioscreen_m_poult
0.057041095
vioscreen_m_soy
0.566602691
vioscreen_magnes
534.1925942
vioscreen_maltitol
0.0
vioscreen_maltose
1.136438323
vioscreen_mangan
11.22797383
vioscreen_mannitol
0.49186301
vioscreen_methhis3
0.5204657570000001
vioscreen_methion
1.052082219
vioscreen_mfa141
0.014219178
vioscreen_mfa161
0.488191704
vioscreen_mfa181
37.22737318
vioscreen_mfa201
0.49104108399999996
vioscreen_mfa221
0.010273973
vioscreen_mfatot
38.32734107
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7
vioscreen_natoco
16.50246549
vioscreen_nccglbr
139.899711
vioscreen_nccglgr
97.84648973
vioscreen_niacin
17.28726188
vioscreen_niacineq
28.77328767
vioscreen_nitrogen
10.2662183
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.7716435680000002
vioscreen_oxalic
582.0881849
vioscreen_oxalicm
614.3107449
vioscreen_pantothe
6.391644371
vioscreen_pectins
5.710601723
vioscreen_pfa182
23.67156197
vioscreen_pfa183
1.745479552
vioscreen_pfa184
0.001123288
vioscreen_pfa204
0.082027399
vioscreen_pfa205
0.003890411
vioscreen_pfa225
0.000630137
vioscreen_pfa226
0.020493151
vioscreen_pfatot
25.54575396
vioscreen_phenylal
2.9606298160000004
vioscreen_phosphor
1277.045548
vioscreen_phytic
1495.755479
vioscreen_pinitol
0.040493153
vioscreen_potass
4284.335274
vioscreen_procdate
10/28/15
vioscreen_proline
3.300465874
vioscreen_protanim
13.09358947
vioscreen_protein
60.86167594
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
47.76218429
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
296.0
vioscreen_retinol
159.9931507
vioscreen_rgrain
0.7330410890000001
vioscreen_ribofla
1.824821911
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.6464900000000002
vioscreen_satoco
0.195260265
vioscreen_selenium
100.8083262
vioscreen_serine
3.374382625
vioscreen_sfa100
0.178301354
vioscreen_sfa120
0.290054802
vioscreen_sfa140
0.7316712259999999
vioscreen_sfa160
11.17925875
vioscreen_sfa170
0.059123298
vioscreen_sfa180
3.729315604
vioscreen_sfa200
0.42613696799999995
vioscreen_sfa220
0.736712312
vioscreen_sfa40
0.207616435
vioscreen_sfa60
0.12243836300000001
vioscreen_sfa80
0.08895890699999999
vioscreen_sfatot
18.171481699999998
vioscreen_sodium
3123.326027
vioscreen_sorbitol
1.0313697290000001
vioscreen_srvid
20136.0
vioscreen_starch
103.8040454
vioscreen_started
7/13/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.08575342300000001
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.82539598
vioscreen_sweet_servings
0.01281
vioscreen_tagatose
2.846876672
vioscreen_tfa161t
0.007342465
vioscreen_tfa181t
0.7069589279999999
vioscreen_tfa182t
0.160246559
vioscreen_tgrain
4.5950957830000005
vioscreen_thiamin
1.5217806880000002
vioscreen_threonin
2.115917802
vioscreen_time
28.0
vioscreen_totaltfa
0.872739693
vioscreen_totcla
0.03917808
vioscreen_totfolat
493.98792810000003
vioscreen_totsugar
72.13058647
vioscreen_tryptoph
0.68860273
vioscreen_tyrosine
2.051068701
vioscreen_user_id
20136.0
vioscreen_v_drkgr
0.479205448
vioscreen_v_orange
0.34249315700000005
vioscreen_v_other
1.214739656
vioscreen_v_potato
1.0629588509999999
vioscreen_v_starcy
0.21101371
vioscreen_v_tomato
0.327150716
vioscreen_v_total
3.637643474
vioscreen_valine
3.078740034
vioscreen_veg5_day
5.5
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
7.3
vioscreen_visit
1.0
vioscreen_vita_iu
16861.33973
vioscreen_vita_rae
976.4154966
vioscreen_vita_re
1792.8378420000001
vioscreen_vitb12
1.3394246140000001
vioscreen_vitb6
1.928711941
vioscreen_vitc
167.09794519999997
vioscreen_vitd
1.52156163
vioscreen_vitd2
0.0013698629999999998
vioscreen_vitd3
1.5201917669999998
vioscreen_vitd_iu
60.86246522
vioscreen_vite_iu
24.80646672
vioscreen_vitk
327.02108300000003
vioscreen_water
5630.143836
vioscreen_weight
Not provided
vioscreen_wgrain
3.8620548610000003
vioscreen_whole_grain_servings
3.4423
vioscreen_xylitol
0.028904115
vioscreen_zinc
10.85002809
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
75.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Occasionally (1-2 times/week)