American Gut Project; 10317.000027828
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633541
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:29:55Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027828
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
40.0
age_corrected
40.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
true
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
27828
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1974.0
bmi
19.79
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-05-26
collection month
May
collection season
Spring
collection time
05:30
collection_timestamp
2015-05-26 05:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Rocky Mountain
elevation
2296.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
185.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
582628b8f84cf95e3187465fb69098409b3d8b091ff7f46b896815b7bcb73eb082f2f4a2596aef2c0b28756b7266c00e66cc53a4421aca07df96e30a0a391d12
host taxid
9606
ibd
Self-diagnosed
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
37.5
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-105.8
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027828
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CO
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
25740b9dece831b2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
1.21449309
vioscreen_addsugar
7.028767792000001
vioscreen_adsugtot
5.966876472
vioscreen_age
215.0
vioscreen_alanine
3.432356325
vioscreen_alcohol
0.005287671
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
324.6584974
vioscreen_alphtoce
3.287424751
vioscreen_alphtoco
2.995698108
vioscreen_arginine
3.667999853
vioscreen_ash
9.870465004
vioscreen_aspartam
0.0
vioscreen_aspartic
5.667122619
vioscreen_avcarb
66.51266053
vioscreen_bcodeid
Not provided
vioscreen_betacar
2503.7830480000002
vioscreen_betacryp
46.25375107
vioscreen_betaine
29.05293236
vioscreen_betatoco
0.048164389
vioscreen_biochana
0.002904109
vioscreen_bmi
Not provided
vioscreen_caffeine
0.293917805
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.05101
vioscreen_calcium_servings
0.67173
vioscreen_calories
818.3338185
vioscreen_carbo
73.17464683
vioscreen_cholest
243.4231807
vioscreen_choline
264.27910959999997
vioscreen_clac9t11
0.043068494000000006
vioscreen_clat10c12
0.014438356000000001
vioscreen_copper
0.57884927
vioscreen_coumest
0.034328769
vioscreen_cystine
0.804657484
vioscreen_d_cheese
0.0009589039999999999
vioscreen_d_milk
0.05
vioscreen_d_tot_soym
0.051013700999999995
vioscreen_d_total
0.051013700999999995
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.11315069300000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.622739693
vioscreen_discfat_oil
7.336823764
vioscreen_discfat_sol
11.58227338
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000219178
vioscreen_f_citmlb
0.085424653
vioscreen_f_nj_citmlb
0.083123288
vioscreen_f_nj_other
0.41350682899999996
vioscreen_f_nj_total
0.49663014899999997
vioscreen_f_other
0.41350682899999996
vioscreen_f_total
0.498904126
vioscreen_fat
31.80654431
vioscreen_fiber
6.629506902999999
vioscreen_fibh2o
1.5738903309999999
vioscreen_fibinso
5.075315711
vioscreen_finished
5/25/15
vioscreen_fish_servings
1.0605799999999999
vioscreen_fol_deqv
222.8265411
vioscreen_fol_nat
101.7070955
vioscreen_fol_syn
71.26526648
vioscreen_formontn
0.000109589
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.0
vioscreen_fructose
5.659122163999999
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
2.158904277
vioscreen_g_total
2.220082239
vioscreen_g_whl
0.06120548
vioscreen_galactos
0.043589038
vioscreen_gammtoco
2.578219145
vioscreen_gender
false
vioscreen_genistn
0.16906849100000002
vioscreen_glac
42.37652237
vioscreen_gltc
45.03134097
vioscreen_glucose
5.766850385
vioscreen_glutamic
9.436630458
vioscreen_glycine
3.0133702110000002
vioscreen_glycitn
0.028767123
vioscreen_grams
2171.617123
vioscreen_hei2010_dairy
0.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
7.6
vioscreen_hei2010_fruit
3.8
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
6.6
vioscreen_hei2010_score
63.7
vioscreen_hei2010_sea_foods_plant_protiens
4.7
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.8
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.5
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.5
vioscreen_hei_sat_fat
8.1
vioscreen_hei_score
69.6
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
1.824520581
vioscreen_inositol
0.020712328999999998
vioscreen_iron
9.898739832999999
vioscreen_isoleuc
2.818109883
vioscreen_isomalt
0.0
vioscreen_joules
3423.908904
vioscreen_juice_servings
0.00455
vioscreen_lactitol
0.0
vioscreen_lactose
0.690356194
vioscreen_legumes
0.0
vioscreen_leucine
4.687342814
vioscreen_line_gi
168.2036601
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1255.742808
vioscreen_lycopene
286.8177868
vioscreen_lysine
4.737863201000001
vioscreen_m_egg
0.552821914
vioscreen_m_fish_hi
0.153999997
vioscreen_m_fish_lo
0.45041094200000004
vioscreen_m_frank
1.599588974
vioscreen_m_meat
2.294986422
vioscreen_m_mpf
6.431123582000001
vioscreen_m_nutsd
0.009013699
vioscreen_m_organ
0.0
vioscreen_m_poult
1.932191781
vioscreen_m_soy
0.005150685
vioscreen_magnes
115.2116117
vioscreen_maltitol
0.0
vioscreen_maltose
0.6901096290000001
vioscreen_mangan
0.9349043340000001
vioscreen_mannitol
0.20339725399999997
vioscreen_methhis3
23.96114887
vioscreen_methion
1.555671086
vioscreen_mfa141
0.062219175999999994
vioscreen_mfa161
0.869150742
vioscreen_mfa181
13.30476509
vioscreen_mfa201
0.123260268
vioscreen_mfa221
0.006575342
vioscreen_mfatot
14.40969874
vioscreen_multi_calcium_avg
85.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
3
vioscreen_natoco
2.988876217
vioscreen_nccglbr
63.17941995
vioscreen_nccglgr
44.20049229999999
vioscreen_niacin
17.57531437
vioscreen_niacineq
28.02476723
vioscreen_nitrogen
9.610904056
vioscreen_non_fried_fish_servings
1.0605799999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.531643802
vioscreen_oxalic
64.02633776
vioscreen_oxalicm
49.31444242
vioscreen_pantothe
2.618521076
vioscreen_pectins
1.184191811
vioscreen_pfa182
4.2713974210000005
vioscreen_pfa183
0.41312322700000004
vioscreen_pfa184
0.001835616
vioscreen_pfa204
0.17024657399999998
vioscreen_pfa205
0.020520546
vioscreen_pfa225
0.024602741
vioscreen_pfa226
0.072849315
vioscreen_pfatot
5.054164437
vioscreen_phenylal
2.4704660080000003
vioscreen_phosphor
628.5688356
vioscreen_phytic
187.07803940000002
vioscreen_pinitol
0.001835616
vioscreen_potass
1197.857277
vioscreen_procdate
10/28/15
vioscreen_proline
2.7274519410000004
vioscreen_protanim
52.26591396
vioscreen_protein
59.6997164
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
7.434411119
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
429.0
vioscreen_retinol
151.96122649999998
vioscreen_rgrain
2.198000054
vioscreen_ribofla
0.8572054929999999
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.35745
vioscreen_satoco
0.014931506
vioscreen_selenium
73.82068172
vioscreen_serine
2.493096004
vioscreen_sfa100
0.040273975
vioscreen_sfa120
0.054849315999999995
vioscreen_sfa140
0.386876689
vioscreen_sfa160
5.874219419
vioscreen_sfa170
0.021561643999999998
vioscreen_sfa180
2.384493224
vioscreen_sfa200
0.042164387000000005
vioscreen_sfa220
0.01989041
vioscreen_sfa40
0.023534244
vioscreen_sfa60
0.013726027
vioscreen_sfa80
0.008739726
vioscreen_sfatot
8.920411494
vioscreen_sodium
2012.177911
vioscreen_sorbitol
0.286328752
vioscreen_srvid
18753.0
vioscreen_starch
43.56279163
vioscreen_started
5/25/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
3.652657454
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.07271233099999999
vioscreen_tfa161t
0.027671234
vioscreen_tfa181t
0.675013712
vioscreen_tfa182t
0.06882192
vioscreen_tgrain
2.67032872
vioscreen_thiamin
0.8749040159999999
vioscreen_threonin
2.495095951
vioscreen_time
14.0
vioscreen_totaltfa
0.780548012
vioscreen_totcla
0.057479456
vioscreen_totfolat
172.972164
vioscreen_totsugar
16.54917862
vioscreen_tryptoph
0.626657523
vioscreen_tyrosine
1.990492897
vioscreen_user_id
18753.0
vioscreen_v_drkgr
0.312712327
vioscreen_v_orange
0.08627397199999999
vioscreen_v_other
0.454137013
vioscreen_v_potato
0.280383552
vioscreen_v_starcy
0.002356164
vioscreen_v_tomato
0.0619726
vioscreen_v_total
1.1978355090000001
vioscreen_valine
2.9995341260000004
vioscreen_veg5_day
2.3
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
2.4
vioscreen_visit
1.0
vioscreen_vita_iu
4987.681507
vioscreen_vita_rae
376.0645976
vioscreen_vita_re
600.1680223
vioscreen_vitb12
3.14531551
vioscreen_vitb6
1.4445753959999998
vioscreen_vitc
45.07616652
vioscreen_vitd
2.9081646639999996
vioscreen_vitd2
0.001123288
vioscreen_vitd3
2.9070412830000003
vioscreen_vitd_iu
116.3265866
vioscreen_vite_iu
4.475753157
vioscreen_vitk
72.43328874
vioscreen_water
2005.8205480000001
vioscreen_weight
Not provided
vioscreen_wgrain
0.47232875
vioscreen_whole_grain_servings
0.06121
vioscreen_xylitol
0.00958904
vioscreen_zinc
6.64386304
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
68.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never