American Gut Project; 10317.000022688
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633408
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:28Z
INSDC last update
2017-08-05T17:29:47Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000022688
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
30s
age years
38.0
age_corrected
38.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
22688
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1977.0
bmi
25.84
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Midwest
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
2015-03-19
collection month
March
collection season
Spring
collection time
09:30
collection_timestamp
2015-03-19 09:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am left handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
262.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
386793aac7ee4a45dfa349f7fda8b6b152fa2d87407d06f23a1bfc4a7e8f73ec71b89e91ea1a4de98ddaeeca44a71249cbbf81aee683820025045c8af5f5b75b
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
42.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Not sure
longitude
-84.4
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
Not sure
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000022688
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MI
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Daily
survey_id
87cfc53f21fb0295
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.368109591
vioscreen_a_cal
49.04704088
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
31.64367241
vioscreen_addsugar
150.9067316
vioscreen_adsugtot
136.7546233
vioscreen_age
215.0
vioscreen_alanine
7.499450851000001
vioscreen_alcohol
5.748246201000001
vioscreen_alcohol_servings
0.36811
vioscreen_alphacar
1492.068493
vioscreen_alphtoce
22.98739298
vioscreen_alphtoco
19.3251806
vioscreen_arginine
8.406136291000001
vioscreen_ash
42.87509632
vioscreen_aspartam
0.0
vioscreen_aspartic
14.69599877
vioscreen_avcarb
508.07170379999997
vioscreen_bcodeid
Not provided
vioscreen_betacar
5251.371233
vioscreen_betacryp
139.12661599999998
vioscreen_betaine
363.8348887
vioscreen_betatoco
1.066137026
vioscreen_biochana
0.01331507
vioscreen_bmi
Not provided
vioscreen_caffeine
118.3253639
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
5.61247
vioscreen_calcium_servings
8.568
vioscreen_calories
4761.753425
vioscreen_carbo
547.6594606000001
vioscreen_cholest
649.3062927999999
vioscreen_choline
748.5428082000001
vioscreen_clac9t11
0.363808243
vioscreen_clat10c12
0.07561645
vioscreen_copper
2.757945607
vioscreen_coumest
0.09624657800000001
vioscreen_cystine
2.113944945
vioscreen_d_cheese
1.92309587
vioscreen_d_milk
3.096712128
vioscreen_d_tot_soym
5.612465218
vioscreen_d_total
5.612465218
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.213917792
vioscreen_database
NDSR - V44
vioscreen_delttoco
7.2372605420000005
vioscreen_discfat_oil
45.80227419
vioscreen_discfat_sol
132.0779324
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001232877
vioscreen_f_citmlb
0.482109634
vioscreen_f_nj_citmlb
0.475068518
vioscreen_f_nj_other
1.1975891109999999
vioscreen_f_nj_total
1.6726850119999999
vioscreen_f_other
1.1975891109999999
vioscreen_f_total
1.679698704
vioscreen_fat
213.9395548
vioscreen_fiber
39.45479452
vioscreen_fibh2o
12.20805463
vioscreen_fibinso
27.08928992
vioscreen_finished
4/6/15
vioscreen_fish_servings
1.54231
vioscreen_fol_deqv
969.7105308
vioscreen_fol_nat
395.8942209
vioscreen_fol_syn
337.253125
vioscreen_formontn
0.00320548
vioscreen_fried_fish_servings
0.4275
vioscreen_fried_food_servings
0.41096000000000005
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.4
vioscreen_fructose
27.16586847
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
12.38449139
vioscreen_g_total
16.19928564
vioscreen_g_whl
3.814767832
vioscreen_galactos
1.258548015
vioscreen_gammtoco
31.56451466
vioscreen_gender
false
vioscreen_genistn
0.321890363
vioscreen_glac
254.10646400000002
vioscreen_gltc
273.5377354
vioscreen_glucose
30.67605683
vioscreen_glutamic
35.65229827
vioscreen_glycine
6.582876043
vioscreen_glycitn
0.036712327999999995
vioscreen_grams
5527.201370000001
vioscreen_hei2010_dairy
9.1
vioscreen_hei2010_empty_calories
8.9
vioscreen_hei2010_fatty_acids
1.6
vioscreen_hei2010_fruit
2.2
vioscreen_hei2010_greens_beans
0.3
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
6.8
vioscreen_hei2010_score
54.9
vioscreen_hei2010_sea_foods_plant_protiens
4.0
vioscreen_hei2010_sodium
4.4
vioscreen_hei2010_veg
3.5
vioscreen_hei2010_whole_fruit
4.4
vioscreen_hei2010_whole_grains
5.3
vioscreen_hei_drk_g_org_veg_leg
1.0
vioscreen_hei_fruit
2.2
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
8.7
vioscreen_hei_milk
9.1
vioscreen_hei_non_juice_frt
4.4
vioscreen_hei_oils
8.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
56.7
vioscreen_hei_sodium
3.5
vioscreen_hei_sol_fat_alc_add_sug
8.6
vioscreen_hei_veg
3.5
vioscreen_hei_whl_grains
2.7
vioscreen_height
Not provided
vioscreen_histidin
4.659698737
vioscreen_inositol
0.10271232300000001
vioscreen_iron
27.74390786
vioscreen_isoleuc
7.66213613
vioscreen_isomalt
0.0
vioscreen_joules
19923.17534
vioscreen_juice_servings
0.01408
vioscreen_lactitol
0.0
vioscreen_lactose
50.56263378
vioscreen_legumes
0.070465757
vioscreen_leucine
13.51717814
vioscreen_line_gi
1112.285188
vioscreen_low_fat_dairy_serving
0.5874199999999999
vioscreen_lutzeax
2143.833048
vioscreen_lycopene
19483.86575
vioscreen_lysine
11.00758843
vioscreen_m_egg
1.248410996
vioscreen_m_fish_hi
0.5289041179999999
vioscreen_m_fish_lo
0.35268496200000005
vioscreen_m_frank
1.365671153
vioscreen_m_meat
4.064465834
vioscreen_m_mpf
6.998355897000001
vioscreen_m_nutsd
1.8456163380000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.6866848879999999
vioscreen_m_soy
0.01090411
vioscreen_magnes
655.6297945
vioscreen_maltitol
0.0
vioscreen_maltose
8.264769504
vioscreen_mangan
7.312411708
vioscreen_mannitol
0.6552875260000001
vioscreen_methhis3
24.61791792
vioscreen_methion
3.86416417
vioscreen_mfa141
0.39553423299999996
vioscreen_mfa161
3.181917206
vioscreen_mfa181
69.52732235
vioscreen_mfa201
0.690712289
vioscreen_mfa221
0.108958916
vioscreen_mfatot
74.66656678
vioscreen_multi_calcium_avg
28.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
1
vioscreen_natoco
19.31835804
vioscreen_nccglbr
410.3361729
vioscreen_nccglgr
287.0725813
vioscreen_niacin
42.39608305
vioscreen_niacineq
74.51238228
vioscreen_nitrogen
27.80490689
vioscreen_non_fried_fish_servings
1.11481
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.815178524
vioscreen_oxalic
374.0033818
vioscreen_oxalicm
338.9440068
vioscreen_pantothe
10.7200008
vioscreen_pectins
4.577890558
vioscreen_pfa182
35.91966503
vioscreen_pfa183
3.4598087680000003
vioscreen_pfa184
0.025095892999999998
vioscreen_pfa204
0.227616402
vioscreen_pfa205
0.090575346
vioscreen_pfa225
0.047342462
vioscreen_pfa226
0.193260276
vioscreen_pfatot
40.16103917
vioscreen_phenylal
7.827040748
vioscreen_phosphor
3159.777397
vioscreen_phytic
1559.268151
vioscreen_pinitol
0.007315069
vioscreen_potass
5772.838356
vioscreen_procdate
10/28/15
vioscreen_proline
12.89005645
vioscreen_protanim
113.5213185
vioscreen_protein
170.6354131
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
57.10490689
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
497.0
vioscreen_retinol
1016.848116
vioscreen_rgrain
12.07597255
vioscreen_ribofla
4.599370251
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.11945
vioscreen_satoco
0.014931506
vioscreen_selenium
266.5742509
vioscreen_serine
8.345014849
vioscreen_sfa100
1.902958784
vioscreen_sfa120
4.426492937
vioscreen_sfa140
8.216959412000001
vioscreen_sfa160
40.27115261
vioscreen_sfa170
0.38594515
vioscreen_sfa180
20.16942423
vioscreen_sfa200
0.405479452
vioscreen_sfa220
0.40104115100000004
vioscreen_sfa40
2.069424731
vioscreen_sfa60
1.091424728
vioscreen_sfa80
1.02799992
vioscreen_sfatot
81.53729666
vioscreen_sodium
7627.85
vioscreen_sorbitol
0.806547818
vioscreen_srvid
18444.0
vioscreen_starch
233.7101455
vioscreen_started
4/6/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
126.8289277
vioscreen_sweet_servings
4.7369900000000005
vioscreen_tagatose
7.716192209
vioscreen_tfa161t
0.162465751
vioscreen_tfa181t
7.31153414
vioscreen_tfa182t
1.310054831
vioscreen_tgrain
17.21334279
vioscreen_thiamin
3.4778363789999998
vioscreen_threonin
6.4373160579999995
vioscreen_time
19.0
vioscreen_totaltfa
8.949259552000001
vioscreen_totcla
0.440684906
vioscreen_totfolat
733.1468322000001
vioscreen_totsugar
245.4767123
vioscreen_tryptoph
1.9272052919999998
vioscreen_tyrosine
6.275999972999999
vioscreen_user_id
18444.0
vioscreen_v_drkgr
0.063424656
vioscreen_v_orange
0.308739712
vioscreen_v_other
1.181452001
vioscreen_v_potato
1.19493149
vioscreen_v_starcy
0.085315067
vioscreen_v_tomato
0.794657501
vioscreen_v_total
3.629068787
vioscreen_valine
9.041177494
vioscreen_veg5_day
3.0
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
7.3
vioscreen_visit
1.0
vioscreen_vita_iu
13500.8
vioscreen_vita_rae
1522.429966
vioscreen_vita_re
2028.010616
vioscreen_vitb12
11.91109803
vioscreen_vitb6
3.5537256530000003
vioscreen_vitc
133.3336152
vioscreen_vitd
16.01758749
vioscreen_vitd2
0.00460274
vioscreen_vitd3
16.01317691
vioscreen_vitd_iu
640.7034996
vioscreen_vite_iu
28.80073844
vioscreen_vitk
151.5737907
vioscreen_water
4654.27089
vioscreen_weight
Not provided
vioscreen_wgrain
5.137424082
vioscreen_whole_grain_servings
3.8147699999999998
vioscreen_xylitol
0.03953425
vioscreen_zinc
26.05405608
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
74.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily