American Gut Project; 10317.000023826
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-09
External Id
SAMEA3632695
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-09T19:41:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023826
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
55.0
age_corrected
55.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
23826
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1960.0
bmi
27.98
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-03-31
collection month
March
collection season
Spring
collection time
16:00
collection_timestamp
2015-03-31 16:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
13.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
ecf216b952af9f005d26a92da22f20fdc91d30376ba28df9f5e1f98f0bb0941cbce88e5d9326590906b84cf7968e253a2c6d70d0a5ff0b8fbec81a303cce56c7
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.5
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Rarely (less than once/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
Not provided
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023826
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
5-6 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NJ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
bee1b3d64c6cb0f5
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.23534247
vioscreen_a_cal
29.04775257
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.321287056
vioscreen_addsugar
28.061341499999997
vioscreen_adsugtot
26.28575289
vioscreen_age
215.0
vioscreen_alanine
4.140575169
vioscreen_alcohol
3.451369863
vioscreen_alcohol_servings
0.23534000000000002
vioscreen_alphacar
1213.311815
vioscreen_alphtoce
16.22827349
vioscreen_alphtoco
14.81460162
vioscreen_arginine
5.914247779
vioscreen_ash
21.28556427
vioscreen_aspartam
0.0
vioscreen_aspartic
8.84542554
vioscreen_avcarb
202.9922089
vioscreen_bcodeid
Not provided
vioscreen_betacar
7028.443151
vioscreen_betacryp
193.1603382
vioscreen_betaine
94.54389983
vioscreen_betatoco
0.585013653
vioscreen_biochana
0.013068493
vioscreen_bmi
Not provided
vioscreen_caffeine
356.8952269
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.32532
vioscreen_calcium_servings
2.7881400000000003
vioscreen_calories
1907.503253
vioscreen_carbo
238.6213185
vioscreen_cholest
184.56697350000002
vioscreen_choline
397.6457192
vioscreen_clac9t11
0.052794522
vioscreen_clat10c12
0.013260273999999999
vioscreen_copper
1.970054982
vioscreen_coumest
0.18172603199999998
vioscreen_cystine
1.106164551
vioscreen_d_cheese
0.219862993
vioscreen_d_milk
0.8561918079999999
vioscreen_d_tot_soym
1.325315042
vioscreen_d_total
1.325315042
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
2.341780989
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.3991779480000002
vioscreen_discfat_oil
31.85175246
vioscreen_discfat_sol
17.30506742
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.004383560999999999
vioscreen_f_citmlb
0.789260321
vioscreen_f_nj_citmlb
0.780821918
vioscreen_f_nj_other
2.82142451
vioscreen_f_nj_total
3.602246428
vioscreen_f_other
2.82142451
vioscreen_f_total
3.6106575739999998
vioscreen_fat
75.53690604
vioscreen_fiber
35.60878906
vioscreen_fibh2o
11.49273866
vioscreen_fibinso
24.10755833
vioscreen_finished
3/31/15
vioscreen_fish_servings
3.4625
vioscreen_fol_deqv
451.493536
vioscreen_fol_nat
406.2153682
vioscreen_fol_syn
26.62788956
vioscreen_formontn
0.006849315
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.0
vioscreen_frtsumm
7.2
vioscreen_fructose
37.22929955
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
1.310410925
vioscreen_g_total
3.2351512330000003
vioscreen_g_whl
1.9247398059999998
vioscreen_galactos
0.500986261
vioscreen_gammtoco
11.44704222
vioscreen_gender
false
vioscreen_genistn
2.356575577
vioscreen_glac
84.15197453
vioscreen_gltc
94.80367081
vioscreen_glucose
33.10542594
vioscreen_glutamic
16.21411066
vioscreen_glycine
3.993698831
vioscreen_glycitn
1.2611505379999999
vioscreen_grams
3593.2513700000004
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
88.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
6.7
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
2.8
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
8.4
vioscreen_hei_score
84.7
vioscreen_hei_sodium
4.8
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
2.358137073
vioscreen_inositol
0.104602741
vioscreen_iron
12.1771257
vioscreen_isoleuc
3.6887668560000004
vioscreen_isomalt
0.0
vioscreen_joules
7980.989041
vioscreen_juice_servings
0.01679
vioscreen_lactitol
0.0
vioscreen_lactose
14.66643836
vioscreen_legumes
0.292109597
vioscreen_leucine
6.526793932
vioscreen_line_gi
466.66930650000006
vioscreen_low_fat_dairy_serving
0.37567
vioscreen_lutzeax
5713.603425
vioscreen_lycopene
5144.776027
vioscreen_lysine
5.662629762000001
vioscreen_m_egg
0.299287686
vioscreen_m_fish_hi
1.3385205409999998
vioscreen_m_fish_lo
0.634821936
vioscreen_m_frank
0.107342467
vioscreen_m_meat
0.840520571
vioscreen_m_mpf
4.035205747
vioscreen_m_nutsd
4.427233051
vioscreen_m_organ
0.0
vioscreen_m_poult
1.114054808
vioscreen_m_soy
0.155643839
vioscreen_magnes
496.41142980000006
vioscreen_maltitol
0.0
vioscreen_maltose
1.6032326890000002
vioscreen_mangan
6.328217974
vioscreen_mannitol
0.715479435
vioscreen_methhis3
13.55367214
vioscreen_methion
1.8162189640000002
vioscreen_mfa141
0.063205484
vioscreen_mfa161
0.813917855
vioscreen_mfa181
28.02663474
vioscreen_mfa201
0.586876689
vioscreen_mfa221
0.244575354
vioscreen_mfatot
29.95947935
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
14.79577938
vioscreen_nccglbr
143.42092250000002
vioscreen_nccglgr
100.3159354
vioscreen_niacin
24.80652023
vioscreen_niacineq
40.94449647
vioscreen_nitrogen
14.55356245
vioscreen_non_fried_fish_servings
3.4625
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.814657635
vioscreen_oxalic
416.23356160000003
vioscreen_oxalicm
466.9968322
vioscreen_pantothe
7.19561684
vioscreen_pectins
6.698822774
vioscreen_pfa182
17.63934343
vioscreen_pfa183
1.114246525
vioscreen_pfa184
0.055753431
vioscreen_pfa204
0.114794514
vioscreen_pfa205
0.185643883
vioscreen_pfa225
0.07536986400000001
vioscreen_pfa226
0.38386297399999997
vioscreen_pfatot
19.65673962
vioscreen_phenylal
3.90682256
vioscreen_phosphor
1505.6392119999998
vioscreen_phytic
1129.810274
vioscreen_pinitol
0.017452056
vioscreen_potass
4431.02911
vioscreen_procdate
10/28/15
vioscreen_proline
4.963945446
vioscreen_protanim
45.75440925
vioscreen_protein
88.07653575
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
42.32043825
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
507.0
vioscreen_retinol
221.0727312
vioscreen_rgrain
1.1308767659999999
vioscreen_ribofla
2.200493131
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.5449
vioscreen_satoco
0.041835618
vioscreen_selenium
120.797881
vioscreen_serine
4.257808487
vioscreen_sfa100
0.247205447
vioscreen_sfa120
0.44339725
vioscreen_sfa140
1.294438276
vioscreen_sfa160
11.12627488
vioscreen_sfa170
0.083232885
vioscreen_sfa180
4.441945032
vioscreen_sfa200
0.34186301
vioscreen_sfa220
0.6822191209999999
vioscreen_sfa40
0.334109581
vioscreen_sfa60
0.15928769
vioscreen_sfa80
0.11953425
vioscreen_sfatot
19.79372592
vioscreen_sodium
2784.760788
vioscreen_sorbitol
1.7394795459999999
vioscreen_srvid
18410.0
vioscreen_starch
61.20680651
vioscreen_started
3/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.018383562
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.168246999999994
vioscreen_sweet_servings
0.36164
vioscreen_tagatose
3.068301183
vioscreen_tfa161t
0.01789041
vioscreen_tfa181t
0.7658356129999999
vioscreen_tfa182t
0.20424658399999998
vioscreen_tgrain
3.554383495
vioscreen_thiamin
1.5358087409999999
vioscreen_threonin
3.2255611889999996
vioscreen_time
22.0
vioscreen_totaltfa
1.004137013
vioscreen_totcla
0.066493147
vioscreen_totfolat
432.8432791
vioscreen_totsugar
122.6141695
vioscreen_tryptoph
0.96693157
vioscreen_tyrosine
2.981096492
vioscreen_user_id
18410.0
vioscreen_v_drkgr
0.477643826
vioscreen_v_orange
0.32013700300000003
vioscreen_v_other
1.372054761
vioscreen_v_potato
0.046054798
vioscreen_v_starcy
0.0023287670000000003
vioscreen_v_tomato
0.42460277
vioscreen_v_total
2.642766916
vioscreen_valine
4.334575664
vioscreen_veg5_day
5.0
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
5.3
vioscreen_visit
1.0
vioscreen_vita_iu
13623.11781
vioscreen_vita_rae
865.3795377
vioscreen_vita_re
1509.686815
vioscreen_vitb12
4.5278631339999995
vioscreen_vitb6
2.431205018
vioscreen_vitc
173.8273438
vioscreen_vitd
8.895862317999999
vioscreen_vitd2
0.000986301
vioscreen_vitd3
8.89493057
vioscreen_vitd_iu
355.83449269999994
vioscreen_vite_iu
22.07854907
vioscreen_vitk
222.8404324
vioscreen_water
3183.476712
vioscreen_weight
Not provided
vioscreen_wgrain
2.423643515
vioscreen_whole_grain_servings
1.9247400000000001
vioscreen_xylitol
0.057589042
vioscreen_zinc
12.11624438
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
73.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)