American Gut Project; 10317.000030515
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634206
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-10T05:20:25Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030515
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030515
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
21.46
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
Not provided
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-08-28
collection month
August
collection season
Summer
collection time
07:10
collection_timestamp
2015-08-28 07:10
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
South Africa
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
41.1
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
Not provided
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
e5d78524edc65079bb11f2f16e3074e6c37a92d7bf7e5c995028d5005cc4b73e0b7c2583f0a962cafd147ed128d8fd62daebbf8e78185ed5e12f171101e3f891
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
51.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-0.3
lowgrain_diet_type
false
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Not provided
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030515
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
84b460b368d399d2
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.18400001
vioscreen_a_cal
22.64624625
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.972848887
vioscreen_addsugar
46.20665668
vioscreen_adsugtot
41.83306935
vioscreen_age
215.0
vioscreen_alanine
2.84926022
vioscreen_alcohol
2.889041096
vioscreen_alcohol_servings
0.184
vioscreen_alphacar
3144.3304789999997
vioscreen_alphtoce
8.22712302
vioscreen_alphtoco
7.576767846
vioscreen_arginine
3.267205225
vioscreen_ash
19.36400096
vioscreen_aspartam
0.0
vioscreen_aspartic
5.922328500000001
vioscreen_avcarb
165.0989619
vioscreen_bcodeid
Not provided
vioscreen_betacar
10629.9411
vioscreen_betacryp
123.8236943
vioscreen_betaine
102.65760920000001
vioscreen_betatoco
0.19454795100000002
vioscreen_biochana
0.017095891000000002
vioscreen_bmi
Not provided
vioscreen_caffeine
420.2881848999999
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.09553
vioscreen_calcium_servings
4.11466
vioscreen_calories
1637.813356
vioscreen_carbo
185.1656892
vioscreen_cholest
286.4253853
vioscreen_choline
370.405137
vioscreen_clac9t11
0.18701370399999998
vioscreen_clat10c12
0.032356168
vioscreen_copper
1.717725947
vioscreen_coumest
0.082684932
vioscreen_cystine
0.733123361
vioscreen_d_cheese
0.283726021
vioscreen_d_milk
2.554712249
vioscreen_d_tot_soym
3.095534233
vioscreen_d_total
3.095534233
vioscreen_d_yogurt
0.24920547699999998
vioscreen_daidzein
1.87186296
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.9480819909999999
vioscreen_discfat_oil
13.46273812
vioscreen_discfat_sol
49.11279431
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000438356
vioscreen_f_citmlb
0.232219142
vioscreen_f_nj_citmlb
0.231205457
vioscreen_f_nj_other
0.478794505
vioscreen_f_nj_total
0.709999983
vioscreen_f_other
0.478794505
vioscreen_f_total
0.7110136690000001
vioscreen_fat
73.11223245
vioscreen_fiber
20.06455212
vioscreen_fibh2o
4.237561202
vioscreen_fibinso
15.92616519
vioscreen_finished
8/16/15
vioscreen_fish_servings
1.30769
vioscreen_fol_deqv
386.5559503
vioscreen_fol_nat
334.7051798
vioscreen_fol_syn
30.48274026
vioscreen_formontn
0.0016712329999999998
vioscreen_fried_fish_servings
0.79404
vioscreen_fried_food_servings
0.14247
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.4
vioscreen_fructose
11.82471372
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
1.678082025
vioscreen_g_total
2.650602492
vioscreen_g_whl
0.972547975
vioscreen_galactos
0.455753358
vioscreen_gammtoco
5.6227124360000005
vioscreen_gender
false
vioscreen_genistn
2.2275890609999998
vioscreen_glac
65.44936858
vioscreen_gltc
72.24917594
vioscreen_glucose
12.9183567
vioscreen_glutamic
12.32501338
vioscreen_glycine
2.246219666
vioscreen_glycitn
0.351013685
vioscreen_grams
2992.5527399999996
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
8.9
vioscreen_hei2010_fatty_acids
0.0
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
60.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
2.7
vioscreen_hei_meat_beans
8.9
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.8
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
56.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
8.3
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.0
vioscreen_height
Not provided
vioscreen_histidin
1.74416437
vioscreen_inositol
0.10178082599999999
vioscreen_iron
9.726738415
vioscreen_isoleuc
2.995698443
vioscreen_isomalt
0.0
vioscreen_joules
6852.6123290000005
vioscreen_juice_servings
0.00205
vioscreen_lactitol
0.0
vioscreen_lactose
35.35841182
vioscreen_legumes
0.092684926
vioscreen_leucine
5.22041116
vioscreen_line_gi
367.27007710000004
vioscreen_low_fat_dairy_serving
0.24921
vioscreen_lutzeax
8862.041781
vioscreen_lycopene
4556.381164
vioscreen_lysine
4.595314506999999
vioscreen_m_egg
0.569808207
vioscreen_m_fish_hi
0.18142466100000001
vioscreen_m_fish_lo
0.566410974
vioscreen_m_frank
0.03361644
vioscreen_m_meat
0.7908219009999999
vioscreen_m_mpf
1.918903842
vioscreen_m_nutsd
0.614958923
vioscreen_m_organ
0.157917807
vioscreen_m_poult
0.18871232100000002
vioscreen_m_soy
0.178493155
vioscreen_magnes
397.4024829
vioscreen_maltitol
0.0
vioscreen_maltose
2.169671213
vioscreen_mangan
5.243260715
vioscreen_mannitol
0.35246573700000006
vioscreen_methhis3
6.4200001339999995
vioscreen_methion
1.468191654
vioscreen_mfa141
0.06413698599999999
vioscreen_mfa161
0.856054688
vioscreen_mfa181
24.1
vioscreen_mfa201
0.206273975
vioscreen_mfa221
0.042191782000000004
vioscreen_mfatot
25.45596907
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.576767846
vioscreen_nccglbr
126.6318707
vioscreen_nccglgr
88.57531571
vioscreen_niacin
17.07463078
vioscreen_niacineq
29.25715432
vioscreen_nitrogen
10.58687594
vioscreen_non_fried_fish_servings
0.51365
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.3529587840000001
vioscreen_oxalic
230.18279109999997
vioscreen_oxalicm
226.5873716
vioscreen_pantothe
5.8034514129999994
vioscreen_pectins
3.9076984560000003
vioscreen_pfa182
7.311752863
vioscreen_pfa183
1.195424537
vioscreen_pfa184
0.009452054
vioscreen_pfa204
0.093835616
vioscreen_pfa205
0.044219187
vioscreen_pfa225
0.014849316999999999
vioscreen_pfa226
0.089835619
vioscreen_pfatot
8.835807069
vioscreen_phenylal
2.972328834
vioscreen_phosphor
1343.005479
vioscreen_phytic
501.98677230000004
vioscreen_pinitol
0.013260273999999999
vioscreen_potass
3550.510959
vioscreen_procdate
10/28/15
vioscreen_proline
4.484219486000001
vioscreen_protanim
43.85490154
vioscreen_protein
65.75498716
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
21.89591449
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
194.0
vioscreen_retinol
764.4873288
vioscreen_rgrain
1.764054641
vioscreen_ribofla
2.405041002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.1431
vioscreen_satoco
0.0
vioscreen_selenium
89.68190818
vioscreen_serine
3.2737809689999997
vioscreen_sfa100
0.989315169
vioscreen_sfa120
1.5598903709999998
vioscreen_sfa140
3.7561095360000003
vioscreen_sfa160
15.47868552
vioscreen_sfa170
0.11652056599999999
vioscreen_sfa180
7.123452215
vioscreen_sfa200
0.1201096
vioscreen_sfa220
0.10830137699999999
vioscreen_sfa40
1.048328807
vioscreen_sfa60
0.773479472
vioscreen_sfa80
0.7252054290000001
vioscreen_sfatot
32.06813463
vioscreen_sodium
3514.5106159999996
vioscreen_sorbitol
0.379095919
vioscreen_srvid
20416.0
vioscreen_starch
43.56095355
vioscreen_started
8/16/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
42.58473887
vioscreen_sweet_servings
0.79327
vioscreen_tagatose
3.842849355
vioscreen_tfa161t
0.034383562
vioscreen_tfa181t
1.72060296
vioscreen_tfa182t
0.447424651
vioscreen_tgrain
2.539150792
vioscreen_thiamin
1.130685049
vioscreen_threonin
2.5983288069999997
vioscreen_time
54.0
vioscreen_totaltfa
2.39643839
vioscreen_totcla
0.219589024
vioscreen_totfolat
365.1879281
vioscreen_totsugar
105.969146
vioscreen_tryptoph
0.731698567
vioscreen_tyrosine
2.485643862
vioscreen_user_id
20416.0
vioscreen_v_drkgr
0.510109596
vioscreen_v_orange
0.542739701
vioscreen_v_other
1.448739499
vioscreen_v_potato
0.105369861
vioscreen_v_starcy
0.301671235
vioscreen_v_tomato
0.278958903
vioscreen_v_total
3.187616385
vioscreen_valine
3.592931293
vioscreen_veg5_day
5.8
vioscreen_vegetable_servings
5.0
vioscreen_vegsumm
6.4
vioscreen_visit
1.0
vioscreen_vita_iu
22989.69589
vioscreen_vita_rae
1786.490411
vioscreen_vita_re
2808.490925
vioscreen_vitb12
6.998219446
vioscreen_vitb6
1.50369873
vioscreen_vitc
114.77145759999999
vioscreen_vitd
9.758082727
vioscreen_vitd2
0.000328767
vioscreen_vitd3
9.757753639
vioscreen_vitd_iu
390.3233091
vioscreen_vite_iu
11.27479666
vioscreen_vitk
303.58994010000004
vioscreen_water
2664.787842
vioscreen_weight
Not provided
vioscreen_wgrain
0.775123241
vioscreen_whole_grain_servings
0.97255
vioscreen_xylitol
0.028821924
vioscreen_zinc
10.60504134
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
62.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)