American Gut Project; 10317.000028712
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633628
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:35Z
INSDC last update
2017-08-05T17:30:00Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028712
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
50s
age years
54.0
age_corrected
54.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28712
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1961.0
bmi
24.03
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
06/01/2015
collection month
June
collection season
Summer
collection time
08:45
collection_timestamp
2015-06-01 08:45
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Self-diagnosed
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Far West
elevation
74.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
31e2d656b3565433e0b44e2f67b1782b6de9fb6792f54d54256ba21837c8bc82932fce2c03c993d69b5687f869fb01596235e378f1a5ba5dc0afa87fb51141e0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-121.2
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Never
roommates_in_study
No
salted_snacks_frequency
Regularly (3-5 times/week)
sample name
qiita_sid_10317:10317.000028712
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
904b4f3112f1cec3
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.59799997
vioscreen_a_cal
74.77742402
vioscreen_acesupot
7.0563837760000006
vioscreen_activity_level
Not provided
vioscreen_add_sug
8.427205961
vioscreen_addsugar
43.37416524
vioscreen_adsugtot
37.50164277
vioscreen_age
215.0
vioscreen_alanine
2.914877194
vioscreen_alcohol
9.087698657
vioscreen_alcohol_servings
0.598
vioscreen_alphacar
1548.832877
vioscreen_alphtoce
13.31791658
vioscreen_alphtoco
9.930273438
vioscreen_arginine
3.3034788369999997
vioscreen_ash
19.143810199999997
vioscreen_aspartam
64.86022046
vioscreen_aspartic
5.56720556
vioscreen_avcarb
169.5854131
vioscreen_bcodeid
Not provided
vioscreen_betacar
5088.24863
vioscreen_betacryp
28.82490903
vioscreen_betaine
116.5543985
vioscreen_betatoco
0.5142191429999999
vioscreen_biochana
0.021178082
vioscreen_bmi
Not provided
vioscreen_caffeine
144.8155822
vioscreen_calcium
true
vioscreen_calcium_avg
428.0
vioscreen_calcium_dose
1000.0
vioscreen_calcium_freq
3
vioscreen_calcium_from_dairy_servings
1.70523
vioscreen_calcium_servings
3.5451
vioscreen_calories
1883.230651
vioscreen_carbo
189.5564212
vioscreen_cholest
264.7243579
vioscreen_choline
312.03135699999996
vioscreen_clac9t11
0.10221918199999999
vioscreen_clat10c12
0.018410958
vioscreen_copper
1.0267674279999999
vioscreen_coumest
0.251808229
vioscreen_cystine
0.826328727
vioscreen_d_cheese
0.7489041259999999
vioscreen_d_milk
0.732575383
vioscreen_d_tot_soym
1.9524106380000001
vioscreen_d_total
1.7052326359999999
vioscreen_d_yogurt
0.213616442
vioscreen_daidzein
2.9387397660000003
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.324658203
vioscreen_discfat_oil
39.68339844
vioscreen_discfat_sol
43.34942477
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.095123291
vioscreen_f_nj_citmlb
0.093917805
vioscreen_f_nj_other
0.401945224
vioscreen_f_nj_total
0.495945175
vioscreen_f_other
0.7242465920000001
vioscreen_f_total
0.819451988
vioscreen_fat
93.53503853
vioscreen_fiber
19.96385782
vioscreen_fibh2o
5.775806667
vioscreen_fibinso
14.25687875
vioscreen_finished
5/31/15
vioscreen_fish_servings
0.10672999999999999
vioscreen_fol_deqv
534.4262842
vioscreen_fol_nat
224.8663955
vioscreen_fol_syn
182.01166519999998
vioscreen_formontn
0.0038082190000000003
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.33209
vioscreen_frt5_day
0.9
vioscreen_frtsumm
1.6
vioscreen_fructose
15.5311791
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
3.35523297
vioscreen_g_total
5.118219245
vioscreen_g_whl
1.7630685469999998
vioscreen_galactos
0.5201095370000001
vioscreen_gammtoco
21.320220199999998
vioscreen_gender
false
vioscreen_genistn
3.306082112
vioscreen_glac
77.28001926
vioscreen_gltc
83.67481807
vioscreen_glucose
14.87378264
vioscreen_glutamic
12.77350573
vioscreen_glycine
2.429616264
vioscreen_glycitn
0.709342392
vioscreen_grams
3118.4863010000004
vioscreen_hei2010_dairy
8.0
vioscreen_hei2010_empty_calories
14.0
vioscreen_hei2010_fatty_acids
5.5
vioscreen_hei2010_fruit
2.7
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
4.4
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
69.6
vioscreen_hei2010_sea_foods_plant_protiens
3.9
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
3.3
vioscreen_hei2010_whole_grains
6.2
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.7
vioscreen_hei_grains
4.5
vioscreen_hei_meat_beans
8.8
vioscreen_hei_milk
8.0
vioscreen_hei_non_juice_frt
3.3
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.4
vioscreen_hei_score
65.0
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
11.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.1
vioscreen_height
Not provided
vioscreen_histidin
1.7359724490000001
vioscreen_inositol
0.086054799
vioscreen_iron
13.60876498
vioscreen_isoleuc
3.021670992
vioscreen_isomalt
0.0
vioscreen_joules
7879.437671
vioscreen_juice_servings
0.64704
vioscreen_lactitol
0.0
vioscreen_lactose
13.43616492
vioscreen_legumes
0.13164383400000002
vioscreen_leucine
5.071479358
vioscreen_line_gi
381.90749139999997
vioscreen_low_fat_dairy_serving
0.25485
vioscreen_lutzeax
2359.253082
vioscreen_lycopene
1240.976627
vioscreen_lysine
4.255095181000001
vioscreen_m_egg
0.617862984
vioscreen_m_fish_hi
0.01520548
vioscreen_m_fish_lo
0.045589039000000005
vioscreen_m_frank
0.250438366
vioscreen_m_meat
0.074109592
vioscreen_m_mpf
2.436602867
vioscreen_m_nutsd
0.560356161
vioscreen_m_organ
0.0
vioscreen_m_poult
2.0512601669999997
vioscreen_m_soy
0.26616438800000003
vioscreen_magnes
282.51765839999996
vioscreen_maltitol
0.0
vioscreen_maltose
3.0293152689999996
vioscreen_mangan
3.5417811560000003
vioscreen_mannitol
0.265205509
vioscreen_methhis3
8.61937005
vioscreen_methion
1.450712356
vioscreen_mfa141
0.085753428
vioscreen_mfa161
0.9852605109999999
vioscreen_mfa181
31.94695794
vioscreen_mfa201
0.329753405
vioscreen_mfa221
0.0047945209999999995
vioscreen_mfatot
33.57396725
vioscreen_multi_calcium_avg
142.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
5
vioscreen_natoco
9.106273411
vioscreen_nccglbr
141.6209332
vioscreen_nccglgr
99.07495719
vioscreen_niacin
18.18408337
vioscreen_niacineq
30.8009284
vioscreen_nitrogen
10.61698684
vioscreen_non_fried_fish_servings
0.10672999999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.40619164
vioscreen_oxalic
152.46735869999998
vioscreen_oxalicm
130.1440925
vioscreen_pantothe
5.026081576
vioscreen_pectins
2.612630264
vioscreen_pfa182
20.37504548
vioscreen_pfa183
2.336931453
vioscreen_pfa184
0.001643836
vioscreen_pfa204
0.126328779
vioscreen_pfa205
0.013726028999999999
vioscreen_pfa225
0.016356164
vioscreen_pfa226
0.037972602
vioscreen_pfatot
23.04723619
vioscreen_phenylal
2.9366849719999997
vioscreen_phosphor
1183.494007
vioscreen_phytic
686.7092466
vioscreen_pinitol
0.027643839
vioscreen_potass
2251.623459
vioscreen_procdate
10/28/15
vioscreen_proline
4.473808059
vioscreen_protanim
40.96611194
vioscreen_protein
65.55350492
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.58548534
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
417.0
vioscreen_retinol
552.1919521000001
vioscreen_rgrain
3.38646558
vioscreen_ribofla
1.9945203809999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.98573
vioscreen_satoco
1.8310411430000002
vioscreen_selenium
95.92165026
vioscreen_serine
3.1379454730000003
vioscreen_sfa100
0.682712377
vioscreen_sfa120
1.112027354
vioscreen_sfa140
2.684301758
vioscreen_sfa160
15.51430196
vioscreen_sfa170
0.13287671199999998
vioscreen_sfa180
6.973206737000001
vioscreen_sfa200
0.235041098
vioscreen_sfa220
0.188958928
vioscreen_sfa40
0.7863287940000001
vioscreen_sfa60
0.456547985
vioscreen_sfa80
0.341561639
vioscreen_sfatot
29.57435788
vioscreen_sodium
3499.9479450000003
vioscreen_sorbitol
0.46841096200000004
vioscreen_srvid
18795.0
vioscreen_starch
74.06339362
vioscreen_started
5/31/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
31.47788956
vioscreen_sweet_servings
0.7013699999999999
vioscreen_tagatose
2.436246522
vioscreen_tfa161t
0.052657532
vioscreen_tfa181t
3.584767297
vioscreen_tfa182t
0.5072603410000001
vioscreen_tgrain
5.174959198
vioscreen_thiamin
1.2895892420000001
vioscreen_threonin
2.542164424
vioscreen_time
29.0
vioscreen_totaltfa
4.208328873999999
vioscreen_totcla
0.12117808099999999
vioscreen_totfolat
406.8778253
vioscreen_totsugar
79.18103596
vioscreen_tryptoph
0.757945105
vioscreen_tyrosine
2.330438316
vioscreen_user_id
18795.0
vioscreen_v_drkgr
0.484630135
vioscreen_v_orange
0.32547944
vioscreen_v_other
1.320766919
vioscreen_v_potato
0.056986299000000004
vioscreen_v_starcy
0.037260272000000004
vioscreen_v_tomato
0.083917806
vioscreen_v_total
2.30904123
vioscreen_valine
3.4260819110000003
vioscreen_veg5_day
3.9
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
4.6
vioscreen_visit
1.0
vioscreen_vita_iu
11634.80959
vioscreen_vita_rae
1041.949486
vioscreen_vita_re
1531.705651
vioscreen_vitb12
3.6576984560000003
vioscreen_vitb6
1.5162192980000002
vioscreen_vitc
80.0330854
vioscreen_vitd
5.964657132999999
vioscreen_vitd2
0.640438383
vioscreen_vitd3
5.3242732639999995
vioscreen_vitd_iu
238.58628530000001
vioscreen_vite_iu
15.38945313
vioscreen_vitk
207.94135269999998
vioscreen_water
2782.143493
vioscreen_weight
Not provided
vioscreen_wgrain
1.7884931169999998
vioscreen_whole_grain_servings
1.7630700000000001
vioscreen_xylitol
0.017315072
vioscreen_zinc
9.527369167
vitamin_b_supplement_frequency
Occasionally (1-2 times/week)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Not provided
weight kg
63.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never