American Gut Project; 10317.000028896
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633267
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:31Z
INSDC last update
2017-08-05T17:27:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028896
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
Not provided
age cat
70+
age years
71.0
age_corrected
71.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28896
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Not provided
birth year
1944.0
bmi
19.84
bmi_cat
Normal
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
Self-diagnosed
collection date
2015-06-16
collection month
June
collection season
Summer
collection time
13:45
collection_timestamp
2015-06-16 13:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
Self-diagnosed
diabetes type
Not provided
diet type
Vegetarian but eat seafood
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Far West
elevation
24.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Occasionally (1-2 times/week)
flossing_frequency
Daily
flu_vaccine_date
Not provided
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
Not provided
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
160.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
78a520828025e29545a1bbc09ea920085bc38a053e669cf445e9e7f328e997c693c6c28163240b8acd74cf855d5e885a43e39a144c824b09ed2eb707d2d38877
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
38.0
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
Yes
longitude
-122.5
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Never
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Never
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Rarely (less than once/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Never
roommates_in_study
Yes
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000028896
sample type
Stool
seafood_frequency
Daily
seasonal_allergies
Not provided
sex
other
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
CA
subset_age
false
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
624e330d1ab5340e
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
3.920356312
vioscreen_addsugar
18.7784367
vioscreen_adsugtot
18.01052012
vioscreen_age
215.0
vioscreen_alanine
2.585287517
vioscreen_alcohol
0.001041096
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
5460.731507
vioscreen_alphtoce
10.33334225
vioscreen_alphtoco
9.105423266
vioscreen_arginine
2.8769584760000004
vioscreen_ash
14.56619221
vioscreen_aspartam
0.0
vioscreen_aspartic
5.567122952999999
vioscreen_avcarb
99.07717252
vioscreen_bcodeid
Not provided
vioscreen_betacar
20961.92329
vioscreen_betacryp
140.38210619999998
vioscreen_betaine
34.62227098
vioscreen_betatoco
0.320904123
vioscreen_biochana
0.010986302
vioscreen_bmi
Not provided
vioscreen_caffeine
215.2636344
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.13410999999999998
vioscreen_calcium_servings
1.44575
vioscreen_calories
942.3984588999999
vioscreen_carbo
130.52930220000002
vioscreen_cholest
38.54909568
vioscreen_choline
199.0120719
vioscreen_clac9t11
0.005890411
vioscreen_clat10c12
0.000876712
vioscreen_copper
1.0800274570000001
vioscreen_coumest
0.108767125
vioscreen_cystine
0.779041113
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.134109581
vioscreen_d_tot_soym
0.134109581
vioscreen_d_total
0.134109581
vioscreen_d_yogurt
0.0
vioscreen_daidzein
1.907616519
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.982465687
vioscreen_discfat_oil
17.07794574
vioscreen_discfat_sol
5.998493017
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000328767
vioscreen_f_citmlb
1.3587944140000001
vioscreen_f_nj_citmlb
1.348164347
vioscreen_f_nj_other
1.124931524
vioscreen_f_nj_total
2.47309587
vioscreen_f_other
1.124931524
vioscreen_f_total
2.483726021
vioscreen_fat
32.09030661
vioscreen_fiber
31.45260595
vioscreen_fibh2o
8.655700182
vioscreen_fibinso
22.88375428
vioscreen_finished
5/28/15
vioscreen_fish_servings
2.94808
vioscreen_fol_deqv
467.04032530000006
vioscreen_fol_nat
467.04032530000006
vioscreen_fol_syn
0.0
vioscreen_formontn
0.003643835
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.0
vioscreen_frtsumm
5.0
vioscreen_fructose
24.06022046
vioscreen_fruit_servings
4.0
vioscreen_g_nwhl
0.0026301370000000003
vioscreen_g_total
0.0026301370000000003
vioscreen_g_whl
0.0
vioscreen_galactos
0.17030135899999999
vioscreen_gammtoco
10.69775458
vioscreen_gender
false
vioscreen_genistn
2.846766976
vioscreen_glac
35.93322988
vioscreen_gltc
43.58643782
vioscreen_glucose
24.76681828
vioscreen_glutamic
8.476218696
vioscreen_glycine
1.988602646
vioscreen_glycitn
0.587260291
vioscreen_grams
2272.4897260000002
vioscreen_hei2010_dairy
1.1
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
1.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.9
vioscreen_hei_score
71.0
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.238109599
vioscreen_inositol
0.200849329
vioscreen_iron
8.649176611
vioscreen_isoleuc
2.2671503769999997
vioscreen_isomalt
0.0
vioscreen_joules
3942.9958899999997
vioscreen_juice_servings
0.02132
vioscreen_lactitol
0.0
vioscreen_lactose
1.974849335
vioscreen_legumes
0.010109589
vioscreen_leucine
3.678712275
vioscreen_line_gi
316.3312714
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
12745.6137
vioscreen_lycopene
3383.911986
vioscreen_lysine
3.330218255
vioscreen_m_egg
2.156657514
vioscreen_m_fish_hi
1.680054714
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
0.0
vioscreen_m_meat
0.0
vioscreen_m_mpf
1.680054714
vioscreen_m_nutsd
0.22739726
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
1.1735890009999999
vioscreen_magnes
255.59071060000002
vioscreen_maltitol
0.0
vioscreen_maltose
0.717342513
vioscreen_mangan
3.6131227260000003
vioscreen_mannitol
0.608986256
vioscreen_methhis3
5.6317810889999995
vioscreen_methion
1.126273963
vioscreen_mfa141
0.005123288
vioscreen_mfa161
0.543890423
vioscreen_mfa181
9.618903842
vioscreen_mfa201
0.30978082100000004
vioscreen_mfa221
0.335205475
vioscreen_mfatot
10.92887682
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
9.105423266
vioscreen_nccglbr
67.61895334
vioscreen_nccglgr
47.30073844
vioscreen_niacin
12.41035825
vioscreen_niacineq
21.52367027
vioscreen_nitrogen
7.861287322999999
vioscreen_non_fried_fish_servings
2.94808
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.105945326
vioscreen_oxalic
394.2827483
vioscreen_oxalicm
394.2618579
vioscreen_pantothe
4.464794922
vioscreen_pectins
7.262630431
vioscreen_pfa182
8.347616117000001
vioscreen_pfa183
1.282630063
vioscreen_pfa184
0.072849315
vioscreen_pfa204
0.040849315
vioscreen_pfa205
0.219972605
vioscreen_pfa225
0.08347945
vioscreen_pfa226
0.447205468
vioscreen_pfatot
10.58344994
vioscreen_phenylal
2.305040835
vioscreen_phosphor
639.9110445
vioscreen_phytic
416.9682363
vioscreen_pinitol
0.038767122
vioscreen_potass
3556.9472600000004
vioscreen_procdate
10/28/15
vioscreen_proline
2.217342178
vioscreen_protanim
25.6042728
vioscreen_protein
49.01332406
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
23.40906999
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
422.0
vioscreen_retinol
91.524497
vioscreen_rgrain
0.099671225
vioscreen_ribofla
1.6350136119999998
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
7.391839999999999
vioscreen_satoco
0.0
vioscreen_selenium
53.67898116
vioscreen_serine
2.4888215369999998
vioscreen_sfa100
0.06410959299999999
vioscreen_sfa120
0.065972608
vioscreen_sfa140
0.40679450899999997
vioscreen_sfa160
4.723780969
vioscreen_sfa170
0.018410958
vioscreen_sfa180
1.84709573
vioscreen_sfa200
0.065232875
vioscreen_sfa220
0.06476712700000001
vioscreen_sfa40
0.05838356
vioscreen_sfa60
0.02060274
vioscreen_sfa80
0.043424653
vioscreen_sfatot
7.456931587000001
vioscreen_sodium
1879.5301370000002
vioscreen_sorbitol
0.605671169
vioscreen_srvid
18780.0
vioscreen_starch
12.37534247
vioscreen_started
5/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
21.73786119
vioscreen_sweet_servings
0.33299999999999996
vioscreen_tagatose
1.47493144
vioscreen_tfa161t
0.006082191999999999
vioscreen_tfa181t
0.336109569
vioscreen_tfa182t
0.18265752899999999
vioscreen_tgrain
0.099671225
vioscreen_thiamin
1.374328864
vioscreen_threonin
1.980191667
vioscreen_time
22.0
vioscreen_totaltfa
0.524438309
vioscreen_totcla
0.0070136980000000005
vioscreen_totfolat
467.04032530000006
vioscreen_totsugar
74.71529324
vioscreen_tryptoph
0.5476713000000001
vioscreen_tyrosine
1.669287611
vioscreen_user_id
18780.0
vioscreen_v_drkgr
1.655452028
vioscreen_v_orange
1.096876672
vioscreen_v_other
2.351342439
vioscreen_v_potato
0.18673973600000002
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.717260241
vioscreen_v_total
6.007671367
vioscreen_valine
2.642850024
vioscreen_veg5_day
12.4
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
12.0
vioscreen_visit
1.0
vioscreen_vita_iu
39909.73973
vioscreen_vita_rae
2071.732877
vioscreen_vita_re
4051.940411
vioscreen_vitb12
2.812273919
vioscreen_vitb6
1.702164156
vioscreen_vitc
252.8109589
vioscreen_vitd
7.383150284
vioscreen_vitd2
0.0
vioscreen_vitd3
7.383150284
vioscreen_vitd_iu
295.3260113
vioscreen_vite_iu
13.57285023
vioscreen_vitk
608.1609589
vioscreen_water
2054.899658
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.076986313
vioscreen_zinc
3.8401370530000003
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
50.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never