American Gut Project; 10317.000028886
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633266
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:33Z
INSDC last update
2017-08-05T17:27:28Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028886
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
49.0
age_corrected
49.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28886
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Self-diagnosed
birth year
1966.0
bmi
31.24
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
South
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-06-25
collection month
June
collection season
Summer
collection time
07:30
collection_timestamp
2015-06-25 07:30
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
true
deodorant_use
Not sure, but I use some form of deodorant/antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
112.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Not provided
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Rarely (less than once/week)
host common name
human
host subject id
e45de282d1cf1817e5610dda858ca16905d3289c6221db04e69c1b11f5f797efe3c6a112299935bed8033912784a24088ff51211e769dab06993cb1112ff7e9d
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.1
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.3
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Never
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates
Two
roommates_in_study
Not sure
salted_snacks_frequency
Daily
sample name
qiita_sid_10317:10317.000028886
sample type
Stool
seafood_frequency
Never
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
MD
subset_age
true
subset_antibiotic_history
true
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
1553958c753b6f8a
teethbrushing_frequency
Regularly (3-5 times/week)
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.0009315069999999999
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.84638404
vioscreen_addsugar
81.71892658
vioscreen_adsugtot
67.76375214
vioscreen_age
215.0
vioscreen_alanine
4.6966579489999996
vioscreen_alcohol
0.05556164
vioscreen_alcohol_servings
0.00093
vioscreen_alphacar
340.4600813
vioscreen_alphtoce
12.54347977
vioscreen_alphtoco
10.63778026
vioscreen_arginine
6.032354987000001
vioscreen_ash
39.72131047
vioscreen_aspartam
648.6957192000001
vioscreen_aspartic
9.713588934
vioscreen_avcarb
352.1398545
vioscreen_bcodeid
Not provided
vioscreen_betacar
3325.5551370000003
vioscreen_betacryp
382.3363014
vioscreen_betaine
250.2630779
vioscreen_betatoco
0.487068448
vioscreen_biochana
0.019287672
vioscreen_bmi
Not provided
vioscreen_caffeine
227.9901327
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.8828200000000002
vioscreen_calcium_servings
5.089230000000001
vioscreen_calories
2716.726027
vioscreen_carbo
393.7014127
vioscreen_cholest
230.735167
vioscreen_choline
363.21168660000006
vioscreen_clac9t11
0.105835619
vioscreen_clat10c12
0.021095892999999998
vioscreen_copper
2.23186286
vioscreen_coumest
0.020136987
vioscreen_cystine
1.458986382
vioscreen_d_cheese
1.271808279
vioscreen_d_milk
0.609452088
vioscreen_d_tot_soym
1.882821864
vioscreen_d_total
1.882821864
vioscreen_d_yogurt
0.0
vioscreen_daidzein
3.913287939
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.639479546
vioscreen_discfat_oil
27.549727100000002
vioscreen_discfat_sol
48.43783176
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000739726
vioscreen_f_citmlb
1.855972583
vioscreen_f_nj_citmlb
1.8047670969999998
vioscreen_f_nj_other
2.128849061
vioscreen_f_nj_total
3.933616492
vioscreen_f_other
2.1311505040000003
vioscreen_f_total
3.987150845
vioscreen_fat
89.27696383
vioscreen_fiber
40.49624893
vioscreen_fibh2o
13.06813597
vioscreen_fibinso
27.39824486
vioscreen_finished
6/20/15
vioscreen_fish_servings
0.0
vioscreen_fol_deqv
667.427911
vioscreen_fol_nat
408.807363
vioscreen_fol_syn
152.1054366
vioscreen_formontn
0.010657535
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
5.1
vioscreen_frtsumm
8.0
vioscreen_fructose
46.75686537
vioscreen_fruit_servings
5.0
vioscreen_g_nwhl
7.755506876
vioscreen_g_total
9.607397126
vioscreen_g_whl
1.851945098
vioscreen_galactos
0.19471232800000002
vioscreen_gammtoco
13.86081978
vioscreen_gender
false
vioscreen_genistn
6.745534567999999
vioscreen_glac
200.2891909
vioscreen_gltc
220.647881
vioscreen_glucose
45.81561965
vioscreen_glutamic
22.23690336
vioscreen_glycine
4.539809303
vioscreen_glycitn
1.107068456
vioscreen_grams
3809.353425
vioscreen_hei2010_dairy
5.3
vioscreen_hei2010_empty_calories
16.4
vioscreen_hei2010_fatty_acids
3.7
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
5.8
vioscreen_hei2010_score
65.1
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
4.4
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
4.5
vioscreen_hei_drk_g_org_veg_leg
2.7
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
8.5
vioscreen_hei_sat_fat
8.0
vioscreen_hei_score
73.1
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
16.9
vioscreen_hei_veg
4.4
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.896657615
vioscreen_inositol
0.147780818
vioscreen_iron
28.79569777
vioscreen_isoleuc
4.6286296689999995
vioscreen_isomalt
0.0
vioscreen_joules
11366.78014
vioscreen_juice_servings
0.10704000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
5.925424069
vioscreen_legumes
0.247726022
vioscreen_leucine
8.011286655
vioscreen_line_gi
822.0169521
vioscreen_low_fat_dairy_serving
0.1103
vioscreen_lutzeax
3435.7993149999998
vioscreen_lycopene
7578.011644
vioscreen_lysine
6.376109669
vioscreen_m_egg
0.406931504
vioscreen_m_fish_hi
0.0
vioscreen_m_fish_lo
0.0
vioscreen_m_frank
2.7003287539999996
vioscreen_m_meat
1.67783571
vioscreen_m_mpf
4.527671166
vioscreen_m_nutsd
1.3827945240000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.149506848
vioscreen_m_soy
1.114657467
vioscreen_magnes
472.3958904
vioscreen_maltitol
0.0
vioscreen_maltose
5.974165909
vioscreen_mangan
8.750191968
vioscreen_mannitol
0.727890475
vioscreen_methhis3
15.10282267
vioscreen_methion
2.125561523
vioscreen_mfa141
0.150027403
vioscreen_mfa161
1.312164307
vioscreen_mfa181
28.95356111
vioscreen_mfa201
0.32424655
vioscreen_mfa221
0.01
vioscreen_mfatot
31.00734161
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6
vioscreen_natoco
10.38682176
vioscreen_nccglbr
305.90074910000004
vioscreen_nccglgr
213.9787029
vioscreen_niacin
27.06575343
vioscreen_niacineq
47.88559503
vioscreen_nitrogen
18.27969954
vioscreen_non_fried_fish_servings
0.0
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.8724381959999998
vioscreen_oxalic
364.40997430000004
vioscreen_oxalicm
391.7530394
vioscreen_pantothe
6.2752622
vioscreen_pectins
7.014356137999999
vioscreen_pfa182
17.41928912
vioscreen_pfa183
1.8295886730000002
vioscreen_pfa184
0.001972603
vioscreen_pfa204
0.093150695
vioscreen_pfa205
0.00890411
vioscreen_pfa225
0.016410958
vioscreen_pfa226
0.017013699
vioscreen_pfatot
19.46383642
vioscreen_phenylal
4.913233091
vioscreen_phosphor
1855.5789379999999
vioscreen_phytic
1525.325514
vioscreen_pinitol
0.009616439000000001
vioscreen_potass
4115.441438
vioscreen_procdate
10/28/15
vioscreen_proline
7.308767658
vioscreen_protanim
50.18854345
vioscreen_protein
110.6945527
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
60.5093536
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
381.0
vioscreen_retinol
336.94522689999997
vioscreen_rgrain
9.199040828
vioscreen_ribofla
2.351781223
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.85595
vioscreen_satoco
0.551643852
vioscreen_selenium
147.8008241
vioscreen_serine
5.072629828999999
vioscreen_sfa100
0.61139727
vioscreen_sfa120
1.0185479990000001
vioscreen_sfa140
2.87054828
vioscreen_sfa160
16.13024535
vioscreen_sfa170
0.134602743
vioscreen_sfa180
6.752740395
vioscreen_sfa200
0.210136999
vioscreen_sfa220
0.28569866899999996
vioscreen_sfa40
0.687643892
vioscreen_sfa60
0.348794514
vioscreen_sfa80
0.288273976
vioscreen_sfatot
29.96704035
vioscreen_sodium
10041.07877
vioscreen_sorbitol
0.9273425790000001
vioscreen_srvid
19936.0
vioscreen_starch
166.5264341
vioscreen_started
6/20/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.042876711
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.91309396
vioscreen_sweet_servings
0.8948799999999999
vioscreen_tagatose
0.87000005
vioscreen_tfa161t
0.076000005
vioscreen_tfa181t
1.718685286
vioscreen_tfa182t
0.398547949
vioscreen_tgrain
11.69994515
vioscreen_thiamin
2.8301369860000003
vioscreen_threonin
3.79635595
vioscreen_time
42.0
vioscreen_totaltfa
2.270630217
vioscreen_totcla
0.127260287
vioscreen_totfolat
560.908262
vioscreen_totsugar
152.20235449999998
vioscreen_tryptoph
1.250082188
vioscreen_tyrosine
3.558658297
vioscreen_user_id
19936.0
vioscreen_v_drkgr
0.309917816
vioscreen_v_orange
0.036958903
vioscreen_v_other
0.7357808990000001
vioscreen_v_potato
0.6681096329999999
vioscreen_v_starcy
0.036602739
vioscreen_v_tomato
0.582739676
vioscreen_v_total
2.370027223
vioscreen_valine
5.286164584
vioscreen_veg5_day
2.9
vioscreen_vegetable_servings
0.2137
vioscreen_vegsumm
4.7
vioscreen_visit
1.0
vioscreen_vita_iu
7270.031507
vioscreen_vita_rae
644.1923373
vioscreen_vita_re
951.4382705
vioscreen_vitb12
3.831561363
vioscreen_vitb6
2.947698724
vioscreen_vitc
263.12264550000003
vioscreen_vitd
3.724712382
vioscreen_vitd2
0.001178082
vioscreen_vitd3
3.723589001
vioscreen_vitd_iu
148.9884953
vioscreen_vite_iu
16.03616358
vioscreen_vitk
155.15699909999998
vioscreen_water
3255.123288
vioscreen_weight
Not provided
vioscreen_wgrain
2.500931413
vioscreen_whole_grain_servings
1.85195
vioscreen_xylitol
0.045315071
vioscreen_zinc
15.3198095
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
82.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)