American Gut Project; 10317.000028239
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-05
External Id
SAMEA3633585
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:29Z
INSDC last update
2017-08-05T17:29:57Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028239
acid_reflux
Not provided
acne medication
false
acne_medication_otc
Not provided
add_adhd
I do not have this condition
age cat
30s
age years
36.0
age_corrected
36.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
28239
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1978.0
bmi
34.95
bmi_cat
Obese
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
07/09/2015
collection month
July
collection season
Summer
collection time
10:00
collection_timestamp
2015-07-09 10:00
consume_animal_products_abx
Not sure
contraceptive
Yes, I am taking the pill
cosmetics_frequency
Daily
country
United Kingdom
country of birth
Australia
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
3.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Occasionally (1-2 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
170.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
aecb9978b7c9678b4a57271e70aa9d6d590d8760da69756d62466fc0c6b7fb037243c9a222c0235401267cd4b55d0fac0ae5f6516370b3b6cc9e6eb14d7a9f25
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Self-diagnosed
kidney_disease
I do not have this condition
lactose
false
last_move
Within the past year
last_travel
3 months
latitude
51.5
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
-0.1
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Daily
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Occasionally (1-2 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Occasionally (1-2 times/week)
sample name
qiita_sid_10317:10317.000028239
sample type
Stool
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
5e3ee872146a2262
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.047424651
vioscreen_a_cal
115.7364405
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
9.072191379
vioscreen_addsugar
43.40032641
vioscreen_adsugtot
37.58438303
vioscreen_age
215.0
vioscreen_alanine
5.177177868
vioscreen_alcohol
15.38830132
vioscreen_alcohol_servings
1.04742
vioscreen_alphacar
954.5986301
vioscreen_alphtoce
12.82060413
vioscreen_alphtoco
10.8013712
vioscreen_arginine
6.008300781
vioscreen_ash
24.27474048
vioscreen_aspartam
0.0
vioscreen_aspartic
10.38756154
vioscreen_avcarb
215.97696919999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
5898.484932
vioscreen_betacryp
19.84638271
vioscreen_betaine
142.72630569999998
vioscreen_betatoco
0.393479439
vioscreen_biochana
0.008849315
vioscreen_bmi
Not provided
vioscreen_caffeine
117.27205690000001
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.75299
vioscreen_calcium_servings
4.461530000000001
vioscreen_calories
2449.89589
vioscreen_carbo
239.17996580000002
vioscreen_cholest
541.0867722999999
vioscreen_choline
585.4485445
vioscreen_clac9t11
0.16778081600000003
vioscreen_clat10c12
0.030164387
vioscreen_copper
1.6828216969999998
vioscreen_coumest
0.129205479
vioscreen_cystine
1.342520601
vioscreen_d_cheese
0.8606575740000001
vioscreen_d_milk
1.138931567
vioscreen_d_tot_soym
2.7529862080000003
vioscreen_d_total
2.7529862080000003
vioscreen_d_yogurt
0.74969867
vioscreen_daidzein
1.343287805
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.1474789969999994
vioscreen_discfat_oil
39.13000054
vioscreen_discfat_sol
52.37399401
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000164384
vioscreen_f_citmlb
0.064000002
vioscreen_f_nj_citmlb
0.053178082
vioscreen_f_nj_other
0.9094246640000001
vioscreen_f_nj_total
0.962630097
vioscreen_f_other
0.9094246640000001
vioscreen_f_total
0.9734519640000001
vioscreen_fat
109.491417
vioscreen_fiber
23.20284407
vioscreen_fibh2o
6.108629201
vioscreen_fibinso
17.17819055
vioscreen_finished
6/28/15
vioscreen_fish_servings
5.64096
vioscreen_fol_deqv
417.82572769999996
vioscreen_fol_nat
304.98067210000005
vioscreen_fol_syn
66.38093429
vioscreen_formontn
0.001150685
vioscreen_fried_fish_servings
0.39712
vioscreen_fried_food_servings
0.35616
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.9
vioscreen_fructose
11.23410879
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.632657487
vioscreen_g_total
4.339753786
vioscreen_g_whl
1.70706854
vioscreen_galactos
1.066054754
vioscreen_gammtoco
18.20022474
vioscreen_gender
false
vioscreen_genistn
1.566191707
vioscreen_glac
106.12870290000001
vioscreen_gltc
116.9297303
vioscreen_glucose
12.96800353
vioscreen_glutamic
20.53687794
vioscreen_glycine
4.202438062
vioscreen_glycitn
0.243643836
vioscreen_grams
3423.803082
vioscreen_hei2010_dairy
8.6
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
3.0
vioscreen_hei2010_fruit
2.5
vioscreen_hei2010_greens_beans
4.6
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
72.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.9
vioscreen_hei2010_whole_grains
4.6
vioscreen_hei_drk_g_org_veg_leg
3.2
vioscreen_hei_fruit
2.5
vioscreen_hei_grains
3.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.6
vioscreen_hei_non_juice_frt
4.9
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
1.4
vioscreen_hei_score
66.5
vioscreen_hei_sodium
2.4
vioscreen_hei_sol_fat_alc_add_sug
13.2
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
2.3
vioscreen_height
Not provided
vioscreen_histidin
2.997260274
vioscreen_inositol
0.08868492900000001
vioscreen_iron
11.62402611
vioscreen_isoleuc
5.1941091880000005
vioscreen_isomalt
0.0
vioscreen_joules
10250.36096
vioscreen_juice_servings
0.02164
vioscreen_lactitol
0.0
vioscreen_lactose
29.17956175
vioscreen_legumes
0.0033424659999999997
vioscreen_leucine
9.030245345
vioscreen_line_gi
486.4798801
vioscreen_low_fat_dairy_serving
0.90674
vioscreen_lutzeax
8156.493836
vioscreen_lycopene
44.97052119
vioscreen_lysine
8.145260327
vioscreen_m_egg
1.590410959
vioscreen_m_fish_hi
1.566219298
vioscreen_m_fish_lo
1.648602713
vioscreen_m_frank
0.243041093
vioscreen_m_meat
0.612246579
vioscreen_m_mpf
5.124137147
vioscreen_m_nutsd
1.138109515
vioscreen_m_organ
0.0
vioscreen_m_poult
1.054246542
vioscreen_m_soy
0.19410960600000002
vioscreen_magnes
474.769863
vioscreen_maltitol
0.0
vioscreen_maltose
1.9372055259999998
vioscreen_mangan
4.324493659
vioscreen_mannitol
0.262575291
vioscreen_methhis3
14.61093081
vioscreen_methion
2.690520822
vioscreen_mfa141
0.11799999900000001
vioscreen_mfa161
1.4423836490000002
vioscreen_mfa181
34.88744917
vioscreen_mfa201
0.491150697
vioscreen_mfa221
0.270027391
vioscreen_mfatot
37.47602205
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
Less than once per week
vioscreen_natoco
10.8013712
vioscreen_nccglbr
157.3182042
vioscreen_nccglgr
110.0285317
vioscreen_niacin
24.85197185
vioscreen_niacineq
45.54551049
vioscreen_nitrogen
17.52016401
vioscreen_non_fried_fish_servings
5.24385
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.3292600869999998
vioscreen_oxalic
398.64828769999997
vioscreen_oxalicm
386.06232880000005
vioscreen_pantothe
7.330959038
vioscreen_pectins
3.4728221319999997
vioscreen_pfa182
19.93339844
vioscreen_pfa183
2.49186276
vioscreen_pfa184
0.059917810999999994
vioscreen_pfa204
0.235041119
vioscreen_pfa205
0.217534251
vioscreen_pfa225
0.082054791
vioscreen_pfa226
0.478849312
vioscreen_pfatot
23.61852526
vioscreen_phenylal
5.08147976
vioscreen_phosphor
1888.830822
vioscreen_phytic
847.4320205
vioscreen_pinitol
0.013945206000000002
vioscreen_potass
3868.610274
vioscreen_procdate
10/28/15
vioscreen_proline
7.24419146
vioscreen_protanim
80.53849529
vioscreen_protein
108.57688359999999
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
28.0251525
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
350.0
vioscreen_retinol
603.8499144
vioscreen_rgrain
2.016986502
vioscreen_ribofla
2.470164678
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.97751
vioscreen_satoco
0.0
vioscreen_selenium
173.8446918
vioscreen_serine
5.557096131000001
vioscreen_sfa100
1.0059451590000001
vioscreen_sfa120
1.303095904
vioscreen_sfa140
4.1280276780000005
vioscreen_sfa160
20.21613469
vioscreen_sfa170
0.17969864100000002
vioscreen_sfa180
8.118218911
vioscreen_sfa200
0.246027385
vioscreen_sfa220
0.273589064
vioscreen_sfa40
1.206109619
vioscreen_sfa60
0.727287731
vioscreen_sfa80
0.553999977
vioscreen_sfatot
38.51367455
vioscreen_sodium
4236.240753
vioscreen_sorbitol
0.277534255
vioscreen_srvid
20001.0
vioscreen_starch
103.16594609999999
vioscreen_started
6/28/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
40.49660477
vioscreen_sweet_servings
0.71233
vioscreen_tagatose
6.605643996
vioscreen_tfa161t
0.06857534400000001
vioscreen_tfa181t
1.950548146
vioscreen_tfa182t
0.463616442
vioscreen_tgrain
4.552383883
vioscreen_thiamin
1.460766936
vioscreen_threonin
4.4430958369999995
vioscreen_time
15.0
vioscreen_totaltfa
2.553945212
vioscreen_totcla
0.199616419
vioscreen_totfolat
371.3604452
vioscreen_totsugar
97.71342038
vioscreen_tryptoph
1.241232927
vioscreen_tyrosine
4.176876538
vioscreen_user_id
20001.0
vioscreen_v_drkgr
0.451205486
vioscreen_v_orange
0.171780824
vioscreen_v_other
1.175205429
vioscreen_v_potato
1.1364657470000001
vioscreen_v_starcy
0.20890411
vioscreen_v_tomato
0.001506849
vioscreen_v_total
3.145068694
vioscreen_valine
6.172794038999999
vioscreen_veg5_day
3.6
vioscreen_vegetable_servings
2.0
vioscreen_vegsumm
6.3
vioscreen_visit
1.0
vioscreen_vita_iu
12655.990409999999
vioscreen_vita_rae
1135.992466
vioscreen_vita_re
1668.134247
vioscreen_vitb12
7.486137495
vioscreen_vitb6
2.550602827
vioscreen_vitc
58.74939533
vioscreen_vitd
13.87791631
vioscreen_vitd2
0.071095887
vioscreen_vitd3
13.80684932
vioscreen_vitd_iu
555.1166524
vioscreen_vite_iu
16.10284808
vioscreen_vitk
275.600899
vioscreen_water
2945.27226
vioscreen_weight
Not provided
vioscreen_wgrain
2.535506742
vioscreen_whole_grain_servings
1.70707
vioscreen_xylitol
0.028164388
vioscreen_zinc
13.28802708
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
101.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Daily