American Gut Project; 10317.000030082
human gut metagenome
American Gut Project Stool Sample
ENA first public
2015-10-23
ENA last update
2017-08-10
External Id
SAMEA3634112
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2015-10-23T17:01:32Z
INSDC last update
2017-08-10T05:20:20Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030082
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
45.0
age_corrected
45.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000030082
antibiotic_history
6 months
appendix_removed
true
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1970.0
bmi
25.83
bmi_cat
Overweight
bmi_corrected
Not provided
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have diarrhea (watery stool)
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Not sure
clinical condition
I do not have this condition
collection date
08/11/2015
collection month
August
collection season
Summer
collection time
12:50
collection_timestamp
2015-08-11 12:50
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
Sweden
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
I do not have this condition
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Not sure
drinks_per_session
Not provided
economic_region
Not provided
elevation
49.7
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Outdoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
176.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
2fc7858c4e9abee080848f3601a4a1bc3e233d208cee959f1d7b879b400dd0abc6c5f6c62d94a58eae47ae02672f4d511d718cbc419557cf1c6fd805f8fea048
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
6 months
latitude
52.2
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
0.5
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000030082
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
29c07d56d910f089
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
2.389589075
vioscreen_a_cal
290.77791099999996
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.17126028
vioscreen_addsugar
0.944739689
vioscreen_adsugtot
0.9241095559999999
vioscreen_age
215.0
vioscreen_alanine
5.096602432
vioscreen_alcohol
36.30265679
vioscreen_alcohol_servings
2.38959
vioscreen_alphacar
340.7899615
vioscreen_alphtoce
12.30030233
vioscreen_alphtoco
11.37200075
vioscreen_arginine
5.567890491
vioscreen_ash
30.69903949
vioscreen_aspartam
0.0
vioscreen_aspartic
8.953068145
vioscreen_avcarb
39.51737479
vioscreen_bcodeid
Not provided
vioscreen_betacar
2241.295205
vioscreen_betacryp
114.7064747
vioscreen_betaine
35.84090325
vioscreen_betatoco
0.23534244899999998
vioscreen_biochana
0.0029315070000000003
vioscreen_bmi
Not provided
vioscreen_caffeine
248.63998289999998
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
1.11504
vioscreen_calcium_servings
2.50441
vioscreen_calories
1841.063527
vioscreen_carbo
67.51213078
vioscreen_cholest
458.1065068
vioscreen_choline
514.1776969
vioscreen_clac9t11
0.14958903699999998
vioscreen_clat10c12
0.040219179
vioscreen_copper
2.247040882
vioscreen_coumest
0.10657533599999999
vioscreen_cystine
1.122931493
vioscreen_d_cheese
1.09720551
vioscreen_d_milk
0.017835616999999998
vioscreen_d_tot_soym
1.115041153
vioscreen_d_total
1.115041153
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.137753421
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.957095964
vioscreen_discfat_oil
12.23200048
vioscreen_discfat_sol
37.29758936
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.056383561
vioscreen_f_nj_citmlb
0.026767125
vioscreen_f_nj_other
1.6375617040000001
vioscreen_f_nj_total
1.664328714
vioscreen_f_other
1.6375617040000001
vioscreen_f_total
1.693945145
vioscreen_fat
109.5639127
vioscreen_fiber
27.99501284
vioscreen_fibh2o
9.30317851
vioscreen_fibinso
18.94342493
vioscreen_finished
8/5/15
vioscreen_fish_servings
3.36173
vioscreen_fol_deqv
511.8285531
vioscreen_fol_nat
510.81391270000006
vioscreen_fol_syn
0.596493154
vioscreen_formontn
0.0000822
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.1
vioscreen_frtsumm
3.4
vioscreen_fructose
5.333177708
vioscreen_fruit_servings
0.07123
vioscreen_g_nwhl
0.08512329199999999
vioscreen_g_total
0.08512329199999999
vioscreen_g_whl
0.0
vioscreen_galactos
0.236438344
vioscreen_gammtoco
8.163505993
vioscreen_gender
false
vioscreen_genistn
0.072328771
vioscreen_glac
1.6124110390000002
vioscreen_gltc
2.124739806
vioscreen_glucose
6.34695861
vioscreen_glutamic
15.84778066
vioscreen_glycine
4.461287658
vioscreen_glycitn
0.00780822
vioscreen_grams
4499.089040999999
vioscreen_hei2010_dairy
4.7
vioscreen_hei2010_empty_calories
16.1
vioscreen_hei2010_fatty_acids
5.2
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
5.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
50.8
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
10.5
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
2.900465539
vioscreen_inositol
0.192958905
vioscreen_iron
10.38999893
vioscreen_isoleuc
4.4779724960000005
vioscreen_isomalt
0.0
vioscreen_joules
7703.006848999999
vioscreen_juice_servings
0.05926
vioscreen_lactitol
0.0
vioscreen_lactose
1.424904016
vioscreen_legumes
0.0009315069999999999
vioscreen_leucine
7.494656999
vioscreen_line_gi
31.52188838
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
2891.939384
vioscreen_lycopene
4057.805822
vioscreen_lysine
7.7193145329999995
vioscreen_m_egg
0.572739734
vioscreen_m_fish_hi
1.148137006
vioscreen_m_fish_lo
0.7675616540000001
vioscreen_m_frank
1.50523297
vioscreen_m_meat
4.354740007
vioscreen_m_mpf
9.124301691
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.47375342
vioscreen_m_poult
0.874876676
vioscreen_m_soy
0.000246575
vioscreen_magnes
299.7762628
vioscreen_maltitol
0.0
vioscreen_maltose
0.224602728
vioscreen_mangan
3.050904324
vioscreen_mannitol
0.269287674
vioscreen_methhis3
30.67095997
vioscreen_methion
2.396274013
vioscreen_mfa141
0.246931499
vioscreen_mfa161
3.494383428
vioscreen_mfa181
45.250251500000005
vioscreen_mfa201
0.408383555
vioscreen_mfa221
0.20832877
vioscreen_mfatot
49.8552119
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
11.37200075
vioscreen_nccglbr
26.38177975
vioscreen_nccglgr
18.45608144
vioscreen_niacin
24.66021779
vioscreen_niacineq
41.79547838
vioscreen_nitrogen
15.4344954
vioscreen_non_fried_fish_servings
3.36173
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.0378359440000002
vioscreen_oxalic
95.28356164
vioscreen_oxalicm
92.31134418
vioscreen_pantothe
8.842302547000001
vioscreen_pectins
7.324657534
vioscreen_pfa182
11.73274026
vioscreen_pfa183
1.3830688480000002
vioscreen_pfa184
0.049726026
vioscreen_pfa204
0.236657527
vioscreen_pfa205
0.179260275
vioscreen_pfa225
0.074904105
vioscreen_pfa226
0.35202741200000004
vioscreen_pfatot
14.24611248
vioscreen_phenylal
4.011452202
vioscreen_phosphor
1363.691952
vioscreen_phytic
434.847988
vioscreen_pinitol
0.000273973
vioscreen_potass
3819.317123
vioscreen_procdate
10/28/15
vioscreen_proline
4.888082259
vioscreen_protanim
81.9533658
vioscreen_protein
96.165625
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
14.21227526
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
231.0
vioscreen_retinol
1190.969349
vioscreen_rgrain
0.055671232
vioscreen_ribofla
2.115287384
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.68825
vioscreen_satoco
0.0
vioscreen_selenium
105.8943172
vioscreen_serine
4.183397434
vioscreen_sfa100
0.656739703
vioscreen_sfa120
0.6846849420000001
vioscreen_sfa140
3.144219218
vioscreen_sfa160
20.61545243
vioscreen_sfa170
0.12739726
vioscreen_sfa180
6.867314587
vioscreen_sfa200
0.078657542
vioscreen_sfa220
0.043780821
vioscreen_sfa40
0.7306575409999999
vioscreen_sfa60
0.411589029
vioscreen_sfa80
0.268328774
vioscreen_sfatot
34.0943841
vioscreen_sodium
6228.686301
vioscreen_sorbitol
0.072876719
vioscreen_srvid
20326.0
vioscreen_starch
3.985643862
vioscreen_started
8/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
2.169342292
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.10156164300000001
vioscreen_tfa161t
0.108383555
vioscreen_tfa181t
1.684191895
vioscreen_tfa182t
0.301616428
vioscreen_tgrain
0.055671232
vioscreen_thiamin
1.0753698059999999
vioscreen_threonin
3.897122819
vioscreen_time
18.0
vioscreen_totaltfa
2.105780782
vioscreen_totcla
0.18895890699999998
vioscreen_totfolat
511.4104024
vioscreen_totsugar
15.741974800000001
vioscreen_tryptoph
1.031780755
vioscreen_tyrosine
3.2805480119999997
vioscreen_user_id
20326.0
vioscreen_v_drkgr
0.861260317
vioscreen_v_orange
0.022136986
vioscreen_v_other
1.22890416
vioscreen_v_potato
0.0035342459999999996
vioscreen_v_starcy
0.001506849
vioscreen_v_tomato
0.822931493
vioscreen_v_total
2.9402738389999996
vioscreen_valine
4.94402725
vioscreen_veg5_day
13.2
vioscreen_vegetable_servings
4.0
vioscreen_vegsumm
5.9
vioscreen_visit
1.0
vioscreen_vita_iu
8084.357534000001
vioscreen_vita_rae
1396.726284
vioscreen_vita_re
1602.477397
vioscreen_vitb12
11.09035611
vioscreen_vitb6
2.65983569
vioscreen_vitc
210.1173801
vioscreen_vitd
9.103122993
vioscreen_vitd2
0.0
vioscreen_vitd3
9.103122993
vioscreen_vitd_iu
364.12491969999996
vioscreen_vite_iu
16.95745264
vioscreen_vitk
253.80196919999997
vioscreen_water
4166.115411
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.032821917
vioscreen_zinc
13.76419226
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
80.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Never