preterm stool
gut metagenome
ENA-FIRST-PUBLIC
2020-11-23T04:06:22Z
ENA-LAST-UPDATE
2020-07-29T12:49:12Z
External Id
SAMEA7097362
INSDC center name
NEWCASTLE UNIVERSITY, UK
INSDC first public
2020-11-23T04:06:22Z
INSDC last update
2020-07-29T12:49:12Z
INSDC status
public
Submitter Id
NEW1624.S6.L001
antibiotics admin
0(P2G2)7(V17,C3)14(M5C1)15(t4)18(Mer7)25(Ambisone6,G6,cotrimazole8)37(V13)40(clotrimazole5)
antibiotics summary
Not_during
birthweight
520
blood culture
Yes
breast milk feeding
During
collection date
2015
date blood culture
25/10/2015
day of life at blood culture
23
day of life at sample collection
73
deliverymode
Vaginal
dirichlet multinomial mixtures cluster
1
dslnt_threshold
Below
environment (biome)
human
environment (feature)
intestine
environment (material)
faecal
formula feeding
Never
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
54.9783
geographic location (longitude)
1.6178
gestational age
23
host subject
410
human gut environmental package
human-gut
investigation type
metagenome
mother breast milk secretor status
NonSecretor
nec
Y
nec day onset
14
nec details
terminal ileal resection D18 then colonic perf D28
nec medical or surgical
NoNEC
organism blood culture
enterobacter Cloacae
prelos
PostLOS
prenec
PostNEC
probiotics administration
After
project name
ena-STUDY-NEWCASTLE UNIVERSITY, UK-29-07-2020-07:51:53:774-2055
reads
5899041
sample name
NEW1624.S6.L001
sampleno
2433
scientific_name
gut metagenome
sequencing method
Illumina (Solexa) sequencing
sex
male