preterm stool
gut metagenome
ENA-FIRST-PUBLIC
2020-11-23T04:06:22Z
ENA-LAST-UPDATE
2020-07-29T12:49:11Z
External Id
SAMEA7097259
INSDC center name
NEWCASTLE UNIVERSITY, UK
INSDC first public
2020-11-23T04:06:22Z
INSDC last update
2020-07-29T12:49:11Z
INSDC status
public
Submitter Id
NEW1600.S136.L005
antibiotics admin
0(P2G2) 11 (V 7) 28 (V, C, M7)
antibiotics summary
Not_during
birthweight
855
blood culture
Yes
breast milk feeding
After
collection date
2016
day of life at blood culture
11
day of life at sample collection
158
deliverymode
Vaginal
dirichlet multinomial mixtures cluster
1
dslnt_threshold
Below
environment (biome)
human
environment (feature)
intestine
environment (material)
faecal
formula feeding
After
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
54.9783
geographic location (longitude)
1.6178
gestational age
25
host subject
408
human gut environmental package
human-gut
investigation type
metagenome
mother breast milk secretor status
Secretor
nec
Y
nec day onset
28
nec details
pneumatosis, 7 days NBM, no Sx
nec medical or surgical
Medical
organism blood culture
Staph epi
prelos
PostLOS
prenec
PostNEC
probiotics administration
After
project name
ena-STUDY-NEWCASTLE UNIVERSITY, UK-29-07-2020-07:51:53:774-2055
reads
4507816
sample name
NEW1600.S136.L005
sampleno
3549
scientific_name
gut metagenome
sequencing method
Illumina (Solexa) sequencing
sex
male