CCL20KO E22
mouse skin metagenome
animal_facility
NIAID/NIH Gnotobiotic Animal Facility
background_strain
C57BL/6
collection_date
2018-02-02
description
16S rRNA sequencing of microbiome from mouse skin swab
dna_concentration
1.07 ng/uL
env_biome
terrestrial biome ENVO:00000446
env_feature
animal house ENVO:00003040
env_material
skin of external ear UBERON_0001459
env_package
host-associated
experimental_factor
genotype EFO:0000513
geo_loc_name
USA:MD
host
Mus musculus
host_body_site
RIGHT EAR
host_genotype
CCL20 KO
host_sex
male
host_subject_id
O846 MICE 2
investigation_type
bacteria_archaea
lat_lon
39.00258333 N 77.100898 W
organism
mouse skin metagenome
pcr_primers
FWD:TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGAGAGTTTGATCCTGGCTCAG REV:GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGATTACCGCGGCTGCTGG
pi_name
Joshua Farber
samp_collect_device
skin swab
sample_title
CCL20KO E22
seq_methods
Illumina MiSeq
target_gene
16S rRNA
target_subfragment
V1-V3 region
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated