American Gut Project; 10317.000027921
human gut metagenome
American Gut Project Stool sample
ENA-FIRST-PUBLIC
2018-05-12T17:02:50Z
ENA-LAST-UPDATE
2018-05-12T06:15:12Z
External Id
SAMEA4662445
INSDC center name
UCSDMI
INSDC first public
2018-05-12T17:02:50Z
INSDC last update
2018-05-12T06:15:12Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027921
acid_reflux
Unspecified
acne medication
No
acne_medication_otc
No
add_adhd
Diagnosed by a medical professional (doctor, physician assistant)
age cat
50s
age years
56
age_corrected
56.0
alcohol consumption
No
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic to i have no food allergies that i know of
Yes
allergic_to
Unspecified
allergic_to_other
No
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
alzheimers
I do not have this condition
anonymized name
000027921
antibiotic_history
Year
appendix_removed
No
artificial_sweeteners
Unspecified
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1960
bmi
29.71
bmi_cat
Overweight
bmi_corrected
29.71
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Unspecified
bowel_movement_quality
Unspecified
breastmilk_formula_ensure
No
cancer
Unspecified
cancer treatment
Unspecified
cardiovascular_disease
Unspecified
cat
Yes
cdiff
Diagnosed by a medical professional (doctor, physician assistant)
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2017-06-28
collection month
June
collection season
Summer
collection time
08:25
collection_timestamp
06/28/2017 08:25
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Unspecified
csection
No
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
Yes
dog
No
dominant hand
I am right handed
drinking_water_source
Bottled
drinks_per_session
Unspecified
economic_region
Mideast
elevation
25.3
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
A mixture of breast milk and formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
6 months
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
USA:NY
gluten
Unspecified
height cm
163
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
8b97525eb20be98ca83e38eefd2c1f05411e8ebd56524ed2581f213fe90c5ee529e4b952ea874692d3d65fcd9d5cfa0c31e3093b5c058af848795a3e4d990099
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
kidney_disease
Unspecified
lactose
Unspecified
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
40.7
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-74.0
lowgrain_diet_type
Yes
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Unspecified
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
Unspecified
mental_illness_type_bipolar_disorder
Unspecified
mental_illness_type_bulimia_nervosa
Unspecified
mental_illness_type_depression
Unspecified
mental_illness_type_ptsd_posttraumatic_stress_disorder
Unspecified
mental_illness_type_schizophrenia
Unspecified
mental_illness_type_substance_abuse
Unspecified
mental_illness_type_unspecified
Unspecified
migraine
I do not have this condition
milk_cheese_frequency
Rarely (less than once/week)
milk_substitute_frequency
Never
multivitamin
No
nail_biter
Yes
non_food_allergies
Unspecified
non_food_allergies_beestings
Yes
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
Yes
non_food_allergies_poison_ivyoak
Yes
non_food_allergies_sun
Yes
non_food_allergies_unspecified
No
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
Yes
pets_other
Unspecified
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Daily
poultry_frequency
Occasionally (1-2 times/week)
pregnant
No
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Daily
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates
Three
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000027921
sample type
Stool
scientific_name
human gut metagenome
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
Yes
sex
female
sibo
Unspecified
skin_condition
Unspecified
sleep_duration
7-8 hours
smoking_frequency
Never
softener
No
specialized_diet
Unspecified
specialized_diet_exclude_dairy
Unspecified
specialized_diet_exclude_nightshades
Unspecified
specialized_diet_exclude_refined_sugars
Unspecified
specialized_diet_fodmap
Unspecified
specialized_diet_halaal
Unspecified
specialized_diet_i_do_not_eat_a_specialized_diet
Unspecified
specialized_diet_kosher
Unspecified
specialized_diet_modified_paleo_diet
Unspecified
specialized_diet_other_restrictions_not_described_here
Unspecified
specialized_diet_paleodiet_or_primal_diet
Unspecified
specialized_diet_raw_food_diet
Unspecified
specialized_diet_unspecified
Unspecified
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Unspecified
state
NY
subset_age
True
subset_antibiotic_history
False
subset_bmi
True
subset_diabetes
False
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
7f445a0e3c31d344
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
No
types_of_plants
6 to 10
vegetable_frequency
Regularly (3-5 times/week)
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Occasionally (1-2 times/week)
vivid_dreams
Unspecified
weight kg
78
weight_change
Increased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never