44_D2_GCSF
feces metagenome
host_body_temp
40.4
bioproject_accession
PRJNA339155
perturbation
Salmonella challenge caused slightly decreased perturbation in the pigs that were previously adminstered G-CSF
samp_vol_we_dna_ext
25 mg
collection_date
2013-12-12
sample_title
44_D2_GCSF
host_subject_id
44
host
Sus scrofa
chem_administration
intranasal inoculation with 1x10^7 CFU of nalidixic acid resistant Salmonella enterica serovar Typhimurium UK1 at D0 of the study timeline
host_length
44_D2_GCSF
lat_lon
42.03 N 93.63 W
host_age
6 weeks old at D0
misc_param
the piglets were weaned at 2 weeks of age and shipped to the NADC on Nov. 14th, 2089
host_disease
All pigs were challenged via intranasal inoculation with 1x10^7 CFU of nalidixic acid resistant Salmonella enterica serovar Typhimurium UK1 at D0 of the study timeline
gravidity
this piglet is littermates with piglets from sow #133
sample_name
P44D2noGCSF
host_body_product
feces
env_feature
climate-controlled environment in a research barn
geo_loc_name
USA: Ames, Iowa
host_diet
pigs were on "finisher" diet NexGen 14 Complete (Kent feeds) during the study: crude protein, min 14%; Lysine, min 0.7%; crude fat, min 3%; crude fiber max 5%; calcium min 0.5%; calcium max 1%; phosphorus 0.5%; salt (NaCl) min 0.2%; salt max (0.7%; selenium min 0.3 ppm; zinc min 90 ppm; vitamin A min 1,700 IU/lb; vitamin D3 min 435 IU/lb; vitamin E min 8 IU/lb
env_biome
climate-controlled environment in a research barn
samp_store_temp
- 80C
host_sex
female
env_material
intestinal tract
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated