Carnoulès COWG metatranscriptome
mine drainage metagenome
Environmental RNA originates from the site of Carnoulès, Gard (France). It was extracted from the upper zone of a five centimeter deep white sediments collect sampled at the bottom of the Reigous creek, in a station called COWG, located 30 m downstream of the source of a small stream collecting ancient mine waste waters contaminated with (among others) zinc, lead and arsenic. The 2x100 paired-end libraries were sequenced on one full HiSeq2500 lane each. Combined with sequences from Carnoulès Metagenome Bioproject PRJNA62261, this study allowed the assembly of uncultivated Ferrovum CARN8 (PRJEB28721) and the determination of its metabolic activity in situ by metatranscriptomic analysis.
ENA-FIRST-PUBLIC
2019-03-27T17:05:16Z
ENA-LAST-UPDATE
2019-03-15T13:01:54Z
External Id
SAMEA5424895
INSDC center name
GMGM
INSDC first public
2019-03-27T17:05:16Z
INSDC last update
2019-03-15T13:01:54Z
INSDC status
public
Submitter Id
SKR16
collection date
2007-05-21
environment (biome)
acid mine drainage
environment (feature)
stream
environment (material)
water
geographic location (country and/or sea)
France
geographic location (depth)
0.05
geographic location (elevation)
200
geographic location (latitude)
44.11717
geographic location (longitude)
4.001917
investigation type
metatranscriptome
project name
COWG-mRNA
redox potential
459
sample name
SKR16
scientific_name
mine drainage metagenome
sediment environmental package
sediment
sequencing method
Illumina
sulfate
3209