American Gut Project; 10317.000093438
human gut metagenome
American Gut Project Stool sample
ENA-FIRST-PUBLIC
2018-05-12T17:02:50Z
ENA-LAST-UPDATE
2018-05-11T22:21:04Z
External Id
SAMEA4662372
INSDC center name
UCSDMI
INSDC first public
2018-05-12T17:02:50Z
INSDC last update
2018-05-11T22:21:04Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000093438
acid_reflux
I do not have this condition
acne medication
No
acne_medication_otc
No
add_adhd
I do not have this condition
age cat
60s
age years
66
age_corrected
66.0
alcohol consumption
No
alcohol_frequency
Never
alcohol_types
Unspecified
alcohol_types_beercider
No
alcohol_types_red_wine
No
alcohol_types_sour_beers
No
alcohol_types_spiritshard_alcohol
No
alcohol_types_unspecified
Yes
alcohol_types_white_wine
No
allergic to i have no food allergies that i know of
Yes
allergic_to
Unspecified
allergic_to_other
No
allergic_to_peanuts
No
allergic_to_shellfish
No
allergic_to_tree_nuts
No
allergic_to_unspecified
No
alzheimers
I do not have this condition
anonymized name
000093438
antibiotic_history
Year
appendix_removed
No
artificial_sweeteners
Occasionally (1-2 times/week)
asd
I do not have this condition
assigned_from_geo
Yes
autoimmune
I do not have this condition
birth year
1952
bmi
27.46
bmi_cat
Overweight
bmi_corrected
27.46
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
No
cancer
I do not have this condition
cancer treatment
Unspecified
cardiovascular_disease
I do not have this condition
cat
No
cdiff
I do not have this condition
census_region
Unspecified
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2018-03-21
collection month
March
collection season
Spring
collection time
07:50
collection_timestamp
03/21/2018 07:50
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
United States
csection
No
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Unspecified
diabetes
I do not have this condition
diabetes type
Unspecified
diet type
Omnivore
dna_extracted
Yes
dog
Yes
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
I don't drink
economic_region
Unspecified
elevation
Unspecified
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
Diagnosed by a medical professional (doctor, physician assistant)
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Not sure
fermented_consumed
Unspecified
fermented_consumed_beer
No
fermented_consumed_chicha
No
fermented_consumed_cider
No
fermented_consumed_cottage_cheese
Yes
fermented_consumed_fermented_beansmisonatto
No
fermented_consumed_fermented_breadsourdoughinjera
No
fermented_consumed_fermented_fish
No
fermented_consumed_fermented_tofu
No
fermented_consumed_fish_sauce
No
fermented_consumed_kefir_milk
No
fermented_consumed_kefir_water
No
fermented_consumed_kimchi
No
fermented_consumed_kombucha
Yes
fermented_consumed_mead
No
fermented_consumed_other
No
fermented_consumed_pickled_vegetables
No
fermented_consumed_sauerkraut
No
fermented_consumed_sour_creamcreme_fraiche
No
fermented_consumed_tempeh
No
fermented_consumed_unspecified
No
fermented_consumed_wine
No
fermented_consumed_yogurtlassi
Yes
fermented_frequency
Regularly (3-5 times/week)
fermented_increased
Year
fermented_other
I have been making my own kombucha for about a year.
fermented_plant_frequency
Regularly (3-5 times/week)
fermented_produce_commercial
Unspecified
fermented_produce_commercial_beer
No
fermented_produce_commercial_chicha
No
fermented_produce_commercial_cider
No
fermented_produce_commercial_cottage_cheese
No
fermented_produce_commercial_fermented_beansmisonatto
No
fermented_produce_commercial_fermented_breadsourdoughinjera
No
fermented_produce_commercial_fermented_fish
No
fermented_produce_commercial_fermented_tofu
No
fermented_produce_commercial_fish_sauce
No
fermented_produce_commercial_kefir_milk
No
fermented_produce_commercial_kefir_water
No
fermented_produce_commercial_kimchi
No
fermented_produce_commercial_kombucha
No
fermented_produce_commercial_mead
No
fermented_produce_commercial_other
No
fermented_produce_commercial_pickled_vegetables
No
fermented_produce_commercial_sauerkraut
No
fermented_produce_commercial_sour_creamcreme_fraiche
No
fermented_produce_commercial_tempeh
No
fermented_produce_commercial_unspecified
Yes
fermented_produce_commercial_wine
No
fermented_produce_commercial_yogurtlassi
No
fermented_produce_personal
Unspecified
fermented_produce_personal_beer
No
fermented_produce_personal_chicha
No
fermented_produce_personal_cider
No
fermented_produce_personal_cottage_cheese
No
fermented_produce_personal_fermented_beansmisonatto
No
fermented_produce_personal_fermented_breadsourdoughinjera
No
fermented_produce_personal_fermented_fish
No
fermented_produce_personal_fermented_tofu
No
fermented_produce_personal_fish_sauce
No
fermented_produce_personal_kefir_milk
No
fermented_produce_personal_kefir_water
No
fermented_produce_personal_kimchi
No
fermented_produce_personal_kombucha
Yes
fermented_produce_personal_mead
No
fermented_produce_personal_other
No
fermented_produce_personal_pickled_vegetables
No
fermented_produce_personal_sauerkraut
No
fermented_produce_personal_sour_creamcreme_fraiche
No
fermented_produce_personal_tempeh
No
fermented_produce_personal_unspecified
No
fermented_produce_personal_wine
No
fermented_produce_personal_yogurtlassi
No
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Regularly (3-5 times/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA:Unspecified
gluten
No
height cm
162
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Daily
host
96338f79ca2b30c146b1d9a673c35d33dfa6404487e04c40b32b7d43cf74732ece08a2485fb111fced24ff8f00e18f7533af4888bb803d33e9fa7794375b3d3f
host common name
human
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Unspecified
ibd_diagnosis_refined
Unspecified
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
No
last_move
I have lived in my current state of residence for more than a year.
last_travel
Month
latitude
Unspecified
level_of_education
Some graduate school or professional
liver_disease
I do not have this condition
livingwith
No
longitude
Unspecified
lowgrain_diet_type
Unspecified
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
No
mental_illness_type
Unspecified
mental_illness_type_anorexia_nervosa
No
mental_illness_type_bipolar_disorder
No
mental_illness_type_bulimia_nervosa
No
mental_illness_type_depression
No
mental_illness_type_ptsd_posttraumatic_stress_disorder
No
mental_illness_type_schizophrenia
No
mental_illness_type_substance_abuse
No
mental_illness_type_unspecified
Yes
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
Yes
nail_biter
No
non_food_allergies
Unspecified
non_food_allergies_beestings
No
non_food_allergies_drug_eg_penicillin
No
non_food_allergies_pet_dander
No
non_food_allergies_poison_ivyoak
No
non_food_allergies_sun
No
non_food_allergies_unspecified
Yes
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
Yes
pets_other
No
physical_specimen_location
UCSDMI
physical_specimen_remaining
Yes
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
No
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Rarely (a few times/month)
public
Yes
race
Caucasian
ready_to_eat_meals_frequency
Regularly (3-5 times/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000093438
sample type
Stool
scientific_name
human gut metagenome
seafood_frequency
Regularly (3-5 times/week)
seasonal_allergies
Yes
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
Yes
specialized_diet
Unspecified
specialized_diet_exclude_dairy
No
specialized_diet_exclude_nightshades
No
specialized_diet_exclude_refined_sugars
No
specialized_diet_fodmap
No
specialized_diet_halaal
No
specialized_diet_i_do_not_eat_a_specialized_diet
No
specialized_diet_kosher
No
specialized_diet_modified_paleo_diet
Yes
specialized_diet_other_restrictions_not_described_here
No
specialized_diet_paleodiet_or_primal_diet
No
specialized_diet_raw_food_diet
No
specialized_diet_unspecified
No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
No
state
Unspecified
subset_age
True
subset_antibiotic_history
False
subset_bmi
True
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
85e5a6b3bf549695
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
Yes
types_of_plants
11 to 20
vegetable_frequency
Daily
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Never
weight kg
72
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)