intestinal microbiota of mouse TRIF_M6_het, proximal small intestine sample
mouse gut metagenome
ENA first public
2014-09-15
ENA last update
2016-10-21
External Id
SAMEA2660703
INSDC center alias
MHH
INSDC center name
Hannover Medical School
INSDC first public
2014-09-15T17:02:31Z
INSDC last update
2016-10-21T09:39:03Z
INSDC status
public
Submitter Id
TRIF_M6_het_SI_prox_3
adapters
TCAG
collection date
2010
environment (biome)
Animal facility
environment (feature)
specific pathogen-free
environment (material)
air
geographic location (country and/or sea)
Germany
geographic location (latitude)
52.38547512
geographic location (longitude)
9.80182171
host age
6
host body habitat
proximal small intestine
host body site
proximal small intestine
host common name
house mouse
host family relationship
Litter A
host genotype
C57BL/6 Trif wt/LPS2
host infra specific name
C57BL/6
host sex
female
host subject id
TRIF_M6_het
host taxid
10090
host-associated environmental package
host-associated
investigation type
mimarks-survey
multiplex identifiers
AGCACTGTAG
pcr primers
8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R
project name
TRIF signalling drives homeostatic intestinal epithelial antimicrobial peptide expression
sample name
TRIF_M6_het_SI_prox_3
sequencing method
pyrosequencing
target gene
16S rDNA
target subfragment
V1 - V3