soil metagenome
soil samples during pig decompoition
host
not applicable
isolation_source
soil
collection_date
2016-04
geo_loc_name
USA: Benton County near Pilomath, Oregon
lat_lon
44.33 N 123.29 W
samp_collect_device
50 ml polycarbonate tube
samp_mat_process
stored at -80C, 250 mg extracted using a MoBio soil DNA extraction kit, 450 bp 16S rRNA amplified, Illumina MiSeq sequenced
samp_size
250 mg, depth of 5 cm
barcode
FWD:AACTCTCG; REV:GGATATCT
center_name
CGRB Lab at OSU
experiment_design_description
soil samples from decade long pig decompositon study in Oregon
instrument_model
Illumina MiSeq
library_construction_protocol
Illumina amplification of 16S rRNA
linker
FWD:GT; REV:CC
pcr_primers
FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
platform
Illumina
primer
FWD:GTGTGCCAGCMGCCGCGGTAA; REV:CCGGACTACHVGGGTWTCTAAT
primer_id
701-507
project_name
DPSW
qiita_study
12465
run_center
CGRB
run_prefix
DPSW
sequencing_meth
Sequencing by synthesis
target_gene
16S rRNA
sample_number
68
pig_number
2
pmi_months
120
sample_location_code
c
sample_distance_meters
0
sample_direction
center
sample_location_detail
0_meter_center
BioSampleModel
Metagenome or environmental