Bird Egg Shells from Spain; 1632.E5D12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Abubilla.136.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076514
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:11Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5D12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E5D12
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Zona Miki
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
9
code_id_statistica
8
coll_date_juliane_days
152
collection date
6/2/07 0:00
collection_timestamp
6/2/07
comments_in_spanish
Depredado
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/14/07
depth
0
dna_extracted
TRUE
elevation
923
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
5071376.375
enterococcus_density
1267844.094
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
3307120
estefania_plates
5D12
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
Missing: Not collected
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.136.1
host taxid
57439
latitude
37.32240556
lay_date_juliane_days
143
laying_date
8/22/07
log_enterobacteriaceae_density
6.705125929
log_enterococcus_density
6.103066194
log_mesophiles_density
6.982243727
log_rel_growth_enterobact
-0.350247912
log_rel_growth_enterococcus
-0.669003926
log_rel_growth_mesophiles
-0.402056506
log_rel_growth_staphylococcus
-0.134254001
log_staphylococcus_density
0.134254001
longitude
-3.128919444
mesophiles_density
9599390.995
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
9
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P5E5
predated
egg phase
public
TRUE
rel_growth_enterobacteriaceae
-0.553571319
rel_growth_enterococcus
-0.785712877
rel_growth_staphylococcus
-0.265915594
relative_growth_mesophiles
-0.603773522
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5D12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.136.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
523
species name
Upupa epops
staphylococcus_density
0.36224117
storing_days
12
unhatched_eggs
Missing: Not provided
year
2007