1632.E1A06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.754.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076041
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:14:56Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E1A06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
brood phase
altitude
0
anonymized name
E1A06
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
1.150261992
area
Zona amigo
assigned_from_geo
TRUE
backup
FALSE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
5
clutch_size
6
code_id_statistica
33
coll_date_juliane_days
103
collection date
4/14/07 0:00
collection_timestamp
4/14/07
comments_in_spanish
Abandonados
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
4/14/07
depth
0
dna_extracted
TRUE
elevation
929
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
75.21928331
enterococcus_density
4.880359853
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
751.2
estefania_plates
1A06
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
4/15/07
hatching_success
0.833333333
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.754.2
host taxid
57439
latitude
37.32196944
lay_date_juliane_days
81
laying_date
6/21/07
log_enterobacteriaceae_density
1.882064861
log_enterococcus_density
0.769403904
log_mesophiles_density
6.349990108
log_rel_growth_enterobact
0.050440861
log_rel_growth_enterococcus
-1.122747591
log_rel_growth_mesophiles
-1.301029811
log_rel_growth_staphylococcus
0.331100856
log_staphylococcus_density
1.533165597
longitude
-3.131269444
mesophiles_density
2238669.146
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
6
observer
Juanma/Manolo
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P1D07
predated
No
public
TRUE
rel_growth_enterobacteriaceae
0.123158015
rel_growth_enterococcus
-0.924620646
rel_growth_staphylococcus
1.143388302
relative_growth_mesophiles
-0.949999979
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E1A06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.754.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
46
species name
Upupa epops
staphylococcus_density
33.13230336
storing_days
0
unhatched_eggs
1
year
2007