Bird Egg Shells from Spain; 1632.E3F11.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Abubilla.799.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076325
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:05Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3F11.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E3F11
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Benalua
assigned_from_geo
TRUE
backup
FALSE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
8
code_id_statistica
42
coll_date_juliane_days
131
collection date
5/12/07 0:00
collection_timestamp
5/12/07
comments_in_spanish
Depredado
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/14/07
depth
0
dna_extracted
TRUE
elevation
907
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
953881.8136
enterococcus_density
17842.12281
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
799.2
estefania_plates
3F11
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/12/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.799.2
host taxid
57439
latitude
37.32783056
lay_date_juliane_days
106
laying_date
7/16/07
log_enterobacteriaceae_density
5.979495024
log_enterococcus_density
4.251470865
log_mesophiles_density
6.502373451
log_rel_growth_enterobact
-2.658540893
log_rel_growth_enterococcus
1.945313897
log_rel_growth_mesophiles
-2.726998592
log_rel_growth_staphylococcus
-0.04374997
log_staphylococcus_density
0
longitude
-3.138858333
mesophiles_density
3179606.045
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
8
observer
Juanma
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P3D05
predated
brood phase
public
TRUE
rel_growth_enterobacteriaceae
-0.997804876
rel_growth_enterococcus
87.1685902
rel_growth_staphylococcus
-0.095830133
relative_growth_mesophiles
-0.998124999
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3F11.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.799.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
314
species name
Upupa epops
staphylococcus_density
0
storing_days
2
unhatched_eggs
Missing: Not provided
year
2007