1632.E3C03.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Urraca.cc21b.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076269
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:03Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3C03.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
altitude
0
anonymized name
E3C03
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Charches
assigned_from_geo
TRUE
backup
FALSE
bird_family
Corvidae
bird_order
Passeriformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
7
code_id_statistica
484
coll_date_juliane_days
124
collection date
5/5/07 0:00
collection_timestamp
5/5/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/11/07
depth
0
dna_extracted
TRUE
elevation
1310
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
4490801.852
enterococcus_density
29.25844703
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
CC21B.2 Urraca
estefania_plates
3C03
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
Missing: Not collected
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Black-billed Magpie
host scientific name
Passeriformes
host subject id
Urraca.cc21b.2
host taxid
34924
latitude
37.28454722
lay_date_juliane_days
Missing: Not provided
laying_date
Missing: Not provided
log_enterobacteriaceae_density
6.65232399
log_enterococcus_density
1.480846635
log_mesophiles_density
6.921169257
log_rel_growth_enterobact
6.65232399
log_rel_growth_enterococcus
1.480846635
log_rel_growth_mesophiles
6.384721625
log_rel_growth_staphylococcus
0
log_staphylococcus_density
0
longitude
-2.985819444
mesophiles_density
8340060.582
nest_type
open
number_fledging
Missing: Not provided
number_sampled_eggs
7
observer
Juan
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
platero_plates
P2H09
public
TRUE
rel_growth_enterobacteriaceae
4490801.852
rel_growth_enterococcus
29.25844703
rel_growth_staphylococcus
0
relative_growth_mesophiles
2425054.178
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3C03.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Urraca.cc21b.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
224
species name
Pica pica
staphylococcus_density
0
storing_days
6
unhatched_eggs
Missing: Not provided
year
2007