1632.E5A09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.53.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076470
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:10Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5A09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E5A09
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.100167421
arcsine_hatching_success
1.182995558
area
Cortijo Perro
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
6
clutch_size
7
code_id_statistica
22
coll_date_juliane_days
154
collection date
6/4/07 0:00
collection_timestamp
6/4/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/20/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
9149372.95
enterococcus_density
172166.62
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Caja 53
estefania_plates
5A09
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
1
fledging_date
6/24/07
geo loc name
Spain:Hoya de Guadix
hatching_date
6/5/07
hatching_success
0.857
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.53.2
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
132
laying_date
8/11/07
log_enterobacteriaceae_density
6.961391378
log_enterococcus_density
5.235951476
log_mesophiles_density
6.893275566
log_rel_growth_enterobact
-0.144799651
log_rel_growth_enterococcus
-1.834401131
log_rel_growth_mesophiles
-0.626895359
log_rel_growth_staphylococcus
-1.463425897
log_staphylococcus_density
0
longitude
-3.059219444
mesophiles_density
7821238.167
nest_type
hole
number_fledging
6
number_sampled_eggs
6
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P5C02
predated
No
public
TRUE
rel_growth_enterobacteriaceae
-0.283526142
rel_growth_enterococcus
-0.985358052
rel_growth_staphylococcus
-0.965598759
relative_growth_mesophiles
-0.763895295
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5A09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.53.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
545
species name
Upupa epops
staphylococcus_density
0
storing_days
16
unhatched_eggs
1
year
2007