10677_0052_idba_bin.104
uncultured Eubacteriales bacterium
Cattle rumen microbiome bin 10677_0052_idba_bin.104
ENA-FIRST-PUBLIC
2019-08-09T17:04:01Z
ENA-LAST-UPDATE
2019-07-31T16:26:28Z
External Id
SAMEA5827026
INSDC center name
THE ROSLIN INSTITUTE
INSDC first public
2019-08-09T17:04:01Z
INSDC last update
2019-07-31T16:26:28Z
INSDC status
public
Submitter Id
10677_0052_idba_bin.104
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
binning parameters
tetra-nucleotide frequencies and abundance
binning software
MetaBAT2
collection date
not collected
completeness score
85.6
completeness software
checkm
contamination score
2.35
environment (biome)
Bos taurus
environment (feature)
stomach
environment (material)
bodily fluid
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
55.861398
geographic location (longitude)
-3.206493
investigation type
metagenome
isolation source
cattle rumen
metagenomic source
bovine gut metagenome
project name
Metagenomic sequencing of the rumen of 240 cattle from Scotland
sample derived from
ERS3190330
sample name
10677_0052_idba_bin.104
scientific_name
uncultured Clostridiales bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach (checkm)