1632.E2E12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.792.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076200
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:01Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E2E12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E2E12
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Zona Miki
assigned_from_geo
TRUE
backup
FALSE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
6
code_id_statistica
37
coll_date_juliane_days
119
collection date
4/30/07 0:00
collection_timestamp
4/30/07
comments_in_spanish
Depredado; 1 pollo+4 huevos
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/5/07
depth
0
dna_extracted
TRUE
elevation
923
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
579168921.7
enterococcus_density
10632.94738
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
792 (30/04)
estefania_plates
2.00E+12
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/7/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.792.1
host taxid
57439
latitude
37.32240556
lay_date_juliane_days
104
laying_date
7/14/07
log_enterobacteriaceae_density
8.76280525
log_enterococcus_density
4.026694507
log_mesophiles_density
7.498076517
log_rel_growth_enterobact
-1.899099446
log_rel_growth_enterococcus
1.291178349
log_rel_growth_mesophiles
-0.593942061
log_rel_growth_staphylococcus
-1.046515819
log_staphylococcus_density
1.323214033
longitude
-3.128919444
mesophiles_density
31483028.56
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
5
observer
Manolo
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P2F010
predated
brood phase
public
TRUE
rel_growth_enterobacteriaceae
-0.987384614
rel_growth_enterococcus
18.55142196
rel_growth_staphylococcus
-0.910157013
relative_growth_mesophiles
-0.745282995
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E2E12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.792.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
201
species name
Upupa epops
staphylococcus_density
20.04815498
storing_days
5
unhatched_eggs
Missing: Not provided
year
2007