1632.E3C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Chova.Cho8.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076277
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:04Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E3C10
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.100167421
arcsine_hatching_success
1.570796327
area
Cortijo Bernabeles
assigned_from_geo
TRUE
backup
FALSE
bird_family
Corvidae
bird_order
Passeriformes
broken_eggs
0
brood_size
4
clutch_size
4
code_id_statistica
178
coll_date_juliane_days
126
collection date
5/7/07 0:00
collection_timestamp
5/7/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/12/07
depth
0
dna_extracted
TRUE
elevation
1162
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
2789044.16
enterococcus_density
8255.929555
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
CHO 8.2
estefania_plates
3C10
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
1
fledging_date
6/3/07
geo loc name
Spain:Hoya de Guadix
hatching_date
5/10/07
hatching_success
1
hatching_synchrony
asyn
host common name
Red-billed chough
host scientific name
Passeriformes
host subject id
Chova.Cho8.2
host taxid
56790
latitude
37.31399167
lay_date_juliane_days
107
laying_date
7/17/07
log_enterobacteriaceae_density
6.445455546
log_enterococcus_density
3.916818579
log_mesophiles_density
6.891542467
log_rel_growth_enterobact
-1.177088346
log_rel_growth_enterococcus
0.286276523
log_rel_growth_mesophiles
-2.56863618
log_rel_growth_staphylococcus
-3.391473718
log_staphylococcus_density
0
longitude
-3.056652778
mesophiles_density
7790088.862
nest_type
hole
number_fledging
4
number_sampled_eggs
4
observer
Juanma
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
platero_plates
P3C06
predated
No
public
TRUE
rel_growth_enterobacteriaceae
-0.933486216
rel_growth_enterococcus
0.933198827
rel_growth_staphylococcus
-0.999594
relative_growth_mesophiles
-0.9973
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Chova.Cho8.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
299
species name
Pyrrhocorax phyrrhocorax
staphylococcus_density
0
storing_days
5
unhatched_eggs
0
year
2007