1632.E5D01.r.EMPbird.v4.NoIndex.L001; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.39b.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076502
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:11Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5D01.r.EMPbird.v4.NoIndex.L001
abandoned
No
altitude
0
anonymized name
E5D01
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.086711161
arcsine_hatching_success
Missing: Not collected
area
Cortijo Perro
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
8
code_id_statistica
15
coll_date_juliane_days
143
collection date
5/24/07 0:00
collection_timestamp
5/24/07
comments_in_spanish
Sin datos biometricos de los pollos
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/29/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
2508597.414
enterococcus_density
185823.0307
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Caja 39
estefania_plates
5D01
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
0.75
fledging_date
6/11/07
geo loc name
Spain:Hoya de Guadix
hatching_date
5/24/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.39b.2
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
118
laying_date
7/28/07
log_enterobacteriaceae_density
6.399431143
log_enterococcus_density
5.269101876
log_mesophiles_density
6.834354609
log_rel_growth_enterobact
0.902447997
log_rel_growth_enterococcus
-0.034062022
log_rel_growth_mesophiles
0.279960223
log_rel_growth_staphylococcus
-0.110932053
log_staphylococcus_density
0.527530774
longitude
-3.059219444
mesophiles_density
6828959.628
nest_type
hole
number_fledging
6
number_sampled_eggs
8
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P4E11
predated
No
public
TRUE
rel_growth_enterobacteriaceae
6.98818285
rel_growth_enterococcus
-0.075433873
rel_growth_staphylococcus
-0.225417025
relative_growth_mesophiles
0.905286206
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5D01.r.EMPbird.v4.NoIndex.L001
sample type
bird egg shell
sample_nest
Abubilla.39b.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
482
species name
Upupa epops
staphylococcus_density
2.369230891
storing_days
5
unhatched_eggs
Missing: Not provided
year
2007