1632.E6E02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.C.20.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076608
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:14Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E6E02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E6E02
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.066716148
arcsine_hatching_success
1.209429203
area
Benalua
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
7
clutch_size
8
code_id_statistica
51
coll_date_juliane_days
149
collection date
5/30/07 0:00
collection_timestamp
5/30/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/14/07
depth
0
dna_extracted
TRUE
elevation
907
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
3229980.525
enterococcus_density
15704388.07
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Caja 20
estefania_plates
6.00E+01
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
0.444444444
fledging_date
6/21/07
geo loc name
Spain:Hoya de Guadix
hatching_date
6/4/07
hatching_success
0.875
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.C.20.1
host taxid
57439
latitude
37.32783056
lay_date_juliane_days
131
laying_date
8/10/07
log_enterobacteriaceae_density
6.509200038
log_enterococcus_density
7.196021046
log_mesophiles_density
7.1223489
log_rel_growth_enterobact
0.004963418
log_rel_growth_enterococcus
-2.325298702
log_rel_growth_mesophiles
-0.158216521
log_rel_growth_staphylococcus
0.115153348
log_staphylococcus_density
0.087340256
longitude
-3.138858333
mesophiles_density
13254058.02
nest_type
hole
number_fledging
4
number_sampled_eggs
6
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P5F02
predated
No
public
TRUE
rel_growth_enterobacteriaceae
0.011494249
rel_growth_enterococcus
-0.995271741
rel_growth_staphylococcus
0.303627004
relative_growth_mesophiles
-0.305322106
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E6E02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.C.20.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
508
species name
Upupa epops
staphylococcus_density
0.222757278
storing_days
15
unhatched_eggs
1
year
2007