Bird Egg Shells from Spain; 1632.E4C01.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Cogujada.CogHV1.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076385
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:07Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E4C01.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E4C01
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Hernan-Valle
assigned_from_geo
TRUE
backup
FALSE
bird_family
Alaudidae
bird_order
Passeriformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
4
code_id_statistica
181
coll_date_juliane_days
132
collection date
5/13/07 0:00
collection_timestamp
5/13/07
comments_in_spanish
Depredado
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/14/07
depth
0
dna_extracted
TRUE
elevation
1134
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
1458448.9
enterococcus_density
1.803735388
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
COL HV 1
estefania_plates
4C01
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
Missing: Not collected
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Crested lark
host scientific name
Passeriformes
host subject id
Cogujada.CogHV1.1
host taxid
215306
latitude
37.37229722
lay_date_juliane_days
Missing: Not provided
laying_date
Missing: Not provided
log_enterobacteriaceae_density
6.163891515
log_enterococcus_density
0.447737023
log_mesophiles_density
7.013134819
log_rel_growth_enterobact
0.066727462
log_rel_growth_enterococcus
0.042941178
log_rel_growth_mesophiles
-0.488116552
log_rel_growth_staphylococcus
-0.58752705
log_staphylococcus_density
0.68709599
longitude
-3.066655556
mesophiles_density
10307059.36
nest_type
open
number_fledging
Missing: Not provided
number_sampled_eggs
4
observer
Juanma
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
platero_plates
P3E7
predated
egg phase
public
TRUE
rel_growth_enterobacteriaceae
0.166077625
rel_growth_enterococcus
0.10392909
rel_growth_staphylococcus
-0.741492617
relative_growth_mesophiles
-0.674999935
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E4C01.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Cogujada.CogHV1.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
326
species name
Galerida cristata
staphylococcus_density
3.865147261
storing_days
1
unhatched_eggs
Missing: Not provided
year
2007