Bird Egg Shells from Spain; 1632.E3F06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Carbonero.CA38.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076320
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:05Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3F06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E3F06
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
1.107148718
area
Hernan-Valle
assigned_from_geo
TRUE
backup
FALSE
bird_family
Paridae
bird_order
Passeriformes
broken_eggs
0
brood_size
8
clutch_size
10
code_id_statistica
124
coll_date_juliane_days
130
collection date
5/11/07 0:00
collection_timestamp
5/11/07
comments_in_spanish
Depredado
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/12/07
depth
0
dna_extracted
TRUE
elevation
1134
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
8898953.304
enterococcus_density
279182.8488
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
CA32.1
estefania_plates
3F06
extracted DNA avail now
TRUE
feathers
TRUE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/19/07
hatching_success
0.8
hatching_synchrony
asyn
host common name
Great tit
host scientific name
Passeriformes
host subject id
Carbonero.CA38.1
host taxid
9157
latitude
37.37229722
lay_date_juliane_days
124
laying_date
8/3/07
log_enterobacteriaceae_density
6.949338977
log_enterococcus_density
5.44589029
log_mesophiles_density
7.047948765
log_rel_growth_enterobact
-1.603764544
log_rel_growth_enterococcus
-4.683917291
log_rel_growth_mesophiles
-0.4839606
log_rel_growth_staphylococcus
-0.069849057
log_staphylococcus_density
0.069849057
longitude
-3.066655556
mesophiles_density
11167313.95
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
10
observer
Juanma
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P3A01
predated
brood phase
public
TRUE
rel_growth_enterobacteriaceae
-0.97509793
rel_growth_enterococcus
-0.999979295
rel_growth_staphylococcus
-0.14856609
relative_growth_mesophiles
-0.67187494
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3F06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Carbonero.CA38.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
281
species name
Parus major
staphylococcus_density
0.17448928
storing_days
1
unhatched_eggs
2
year
2007