1632.E3D02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.57a.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076284
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:04Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3D02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E3D02
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
Missing: Not collected
area
Cortijo Perro
assigned_from_geo
TRUE
backup
FALSE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
7
code_id_statistica
25
coll_date_juliane_days
124
collection date
5/5/07 0:00
collection_timestamp
5/5/07
comments_in_spanish
Depredada
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/6/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
9021698.62
enterococcus_density
3.325593422
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
57.2
estefania_plates
3D02
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
Missing: Not collected
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.57a.2
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
110
laying_date
7/20/07
log_enterobacteriaceae_density
6.955288363
log_enterococcus_density
0.636045696
log_mesophiles_density
6.955288363
log_rel_growth_enterobact
0.04487268
log_rel_growth_enterococcus
-2.397834553
log_rel_growth_mesophiles
-1.668820529
log_rel_growth_staphylococcus
0.255753427
log_staphylococcus_density
0.881721936
longitude
-3.059219444
mesophiles_density
9021698.62
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
7
observer
Manolo
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P2H02
predated
egg phase
public
TRUE
rel_growth_enterobacteriaceae
0.108849692
rel_growth_enterococcus
-0.995999029
rel_growth_staphylococcus
0.80199436
relative_growth_mesophiles
-0.978562237
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3D02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.57a.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
217
species name
Upupa epops
staphylococcus_density
6.615912322
storing_days
1
unhatched_eggs
Missing: Not provided
year
2007