Case
human gut metagenome
DA00673
Healthworker
no
ResidenceCdiff
no
Surgery6mos
yes
Vegetarian
no
adapters
A:CCATCTCATCCCTGCGTGTCTCCGACTCAG; B:CCTATCCCCTGTGTGCCTTGGCAGTCTCAG
age
68
antacid
yes
antibiotics >3mo
no
collection_date
2013
description
DA00673
disease_stat
Case
env_biome
hospital
env_feature
human-gut
env_material
feces
gender
male
geo_loc_name
USA:Michigan,Ann Arbor
h2receptor
no
historyCdiff
no
lat_lon
42.282026 N 83.733850 W
lib_const_meth
amplicon
lib_reads_seqd
8630
mid
CCGGTCGC
nucl_acid_amp
http://www.hmpdacc.org/doc/16S_Sequencing_SOP_4.2.2.pdf
nucl_acid_ext
MoBio PowerSoil(R)-htp 96 Well Soil DNA Isolation Kit
organism
human gut metagenome
pcr_primers
FWD:CCGTCAATTCMTTTRAGT; REV:CCTACGGGAGGCAGCAG
protonpump
yes
race
white
samp_collect_device
sterile tub
samp_mat_process
carey-blair
samp_size
NA
samp_store_temp
-20
sample_title
Case
seq_methods
454
sfffile_id
HD9SPZN01.sff
target_gene
16S rRNA
target_subfragment
V53
weight
200-249
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.miscellaneous