Bird Egg Shells from Spain; 1632.E5B12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Abubilla.134.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076487
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:10Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5B12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E5B12
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.066716148
arcsine_hatching_success
Missing: Not collected
area
Cortijo Perro
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
9
code_id_statistica
7
coll_date_juliane_days
152
collection date
6/2/07 0:00
collection_timestamp
6/2/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/14/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
35721871.88
enterococcus_density
238146.8125
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Caja 134
estefania_plates
5B12
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
0.444444444
fledging_date
6/19/07
geo loc name
Spain:Hoya de Guadix
hatching_date
6/2/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.134.2
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
129
laying_date
8/8/07
log_enterobacteriaceae_density
7.552934221
log_enterococcus_density
5.376846597
log_mesophiles_density
6.55293433
log_rel_growth_enterobact
0.68773407
log_rel_growth_enterococcus
-0.385691903
log_rel_growth_mesophiles
-0.054701567
log_rel_growth_staphylococcus
-0.750546838
log_staphylococcus_density
0
longitude
-3.059219444
mesophiles_density
3572187.188
nest_type
hole
number_fledging
4
number_sampled_eggs
6
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P5E3
predated
No
public
TRUE
rel_growth_enterobacteriaceae
3.872300549
rel_growth_enterococcus
-0.588558498
rel_growth_staphylococcus
-0.822395828
relative_growth_mesophiles
-0.11834549
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5B12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.134.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
521
species name
Upupa epops
staphylococcus_density
0
storing_days
12
unhatched_eggs
Missing: Not provided
year
2007