1632.E6D07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.A.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076602
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:14Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E6D07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E6D07
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.100167421
arcsine_hatching_success
1.570796327
area
Cortijo Perro
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
9
clutch_size
9
code_id_statistica
50
coll_date_juliane_days
166
collection date
6/16/07 0:00
collection_timestamp
6/16/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/28/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
255740.8265
enterococcus_density
7886.342149
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Caja 5 A
estefania_plates
6D06
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
1
fledging_date
7/6/07
geo loc name
Spain:Hoya de Guadix
hatching_date
6/16/07
hatching_success
1
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.A.2
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
142
laying_date
8/21/07
log_enterobacteriaceae_density
5.407801763
log_enterococcus_density
3.896930681
log_mesophiles_density
6.00986048
log_rel_growth_enterobact
-0.434482564
log_rel_growth_enterococcus
-0.807833729
log_rel_growth_mesophiles
0.234522839
log_rel_growth_staphylococcus
1.219545812
log_staphylococcus_density
1.448838097
longitude
-3.059219444
mesophiles_density
1022963.306
nest_type
hole
number_fledging
7
number_sampled_eggs
7
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P6B02
predated
No
public
TRUE
rel_growth_enterobacteriaceae
-0.632279844
rel_growth_enterococcus
-0.844343855
rel_growth_staphylococcus
15.5785221
relative_growth_mesophiles
0.716021951
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E6D07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.A.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
605
species name
Upupa epops
staphylococcus_density
27.10852761
storing_days
12
unhatched_eggs
0
year
2007