1632.E3F04.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Alcaudon.Alcaudon3.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076318
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:26Z
INSDC last update
2016-07-13T01:15:05Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3F04.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
altitude
0
anonymized name
E3F04
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
0.785398163
area
Charches
assigned_from_geo
TRUE
backup
TRUE
bird_family
Laniidae
bird_order
Passeriformes
broken_eggs
0
brood_size
3
clutch_size
6
code_id_statistica
61
coll_date_juliane_days
124
collection date
5/5/07 0:00
collection_timestamp
5/5/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/20/07
depth
0
dna_extracted
TRUE
elevation
1310
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
1473668.351
enterococcus_density
6.198774459
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
Alcaudon 3
estefania_plates
3F04
extracted DNA avail now
TRUE
feathers
TRUE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/6/07
hatching_success
0.5
hatching_synchrony
asyn
host common name
Southern grey shrike
host scientific name
Passeriformes
host subject id
Alcaudon.Alcaudon3.2
host taxid
219215
latitude
37.28454722
lay_date_juliane_days
102
laying_date
7/12/07
log_enterobacteriaceae_density
6.168400051
log_enterococcus_density
0.857258567
log_mesophiles_density
6.946551056
log_rel_growth_enterobact
5.292835189
log_rel_growth_enterococcus
-0.384685252
log_rel_growth_mesophiles
-0.243038028
log_rel_growth_staphylococcus
0
log_staphylococcus_density
0
longitude
-2.985819444
mesophiles_density
8842010.104
nest_type
open
number_fledging
Missing: Not provided
number_sampled_eggs
6
observer
Juan
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
platero_plates
P8E4
public
TRUE
rel_growth_enterobacteriaceae
196260.5341
rel_growth_enterococcus
-0.587603711
rel_growth_staphylococcus
0
relative_growth_mesophiles
-0.428571401
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3F04.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Alcaudon.Alcaudon3.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
238
species name
Lanius meridionalis
staphylococcus_density
0
storing_days
15
unhatched_eggs
3
year
2007