Bird Egg Shells from Spain; 1632.E5C07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Mirlo.D89.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076495
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:11Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5C07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
altitude
0
anonymized name
E5C07
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
0.886077124
area
Granada
assigned_from_geo
TRUE
backup
TRUE
bird_family
Turdidae
bird_order
Passeriformes
broken_eggs
0
brood_size
3
clutch_size
5
code_id_statistica
397
coll_date_juliane_days
Missing: Not collected
collection date
6/5/07 0:00
collection_timestamp
6/5/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/13/07
depth
0
dna_extracted
TRUE
elevation
709
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
136026.0014
enterococcus_density
1
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
D89.1
estefania_plates
5C07
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/31/07
hatching_success
0.6
hatching_synchrony
asyn
host common name
Blackbird
host scientific name
Passeriformes
host subject id
Mirlo.D89.2
host taxid
9187
latitude
37.17907778
lay_date_juliane_days
Missing: Not provided
laying_date
Missing: Not provided
log_enterobacteriaceae_density
5.133625125
log_enterococcus_density
0.301029996
log_mesophiles_density
7.577319443
log_rel_growth_enterobact
-1.443694421
log_rel_growth_enterococcus
0.301029996
log_rel_growth_mesophiles
1.901932504
log_rel_growth_staphylococcus
-0.177190082
log_staphylococcus_density
0
longitude
-3.611505556
mesophiles_density
37785000.4
nest_type
open
number_fledging
Missing: Not provided
number_sampled_eggs
5
observer
Juandiego
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
platero_plates
P5A012
public
TRUE
rel_growth_enterobacteriaceae
-0.963999745
rel_growth_enterococcus
1
rel_growth_staphylococcus
-0.335017957
relative_growth_mesophiles
78.78706767
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5C07.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Mirlo.D89.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
494
species name
Turdus merula
staphylococcus_density
0
storing_days
8
unhatched_eggs
2
year
2007