Bird Egg Shells from Spain; 1632.E4C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Abubilla.39b.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076395
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:07Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E4C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E4C10
arcsine_fledge_success_brood
0.100167421
arcsine_fledge_success_clutch
0.086711161
arcsine_hatching_success
Missing: Not collected
area
Cortijo Perro
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
Missing: Not collected
brood_size
Missing: Not collected
clutch_size
8
code_id_statistica
14
coll_date_juliane_days
137
collection date
5/18/07 0:00
collection_timestamp
5/18/07
comments_in_spanish
Sin datos biometricos de los pollos
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/24/07
depth
0
dna_extracted
TRUE
elevation
1160
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
314037.6821
enterococcus_density
200984.1165
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
39.1
estefania_plates
4C10
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
1
fledge_success_clutch
0.75
fledging_date
6/11/07
geo loc name
Spain:Hoya de Guadix
hatching_date
5/24/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.39b.1
host taxid
57439
latitude
37.32654722
lay_date_juliane_days
118
laying_date
7/28/07
log_enterobacteriaceae_density
5.496983146
log_enterococcus_density
5.303163898
log_mesophiles_density
6.554394386
log_rel_growth_enterobact
0.902447997
log_rel_growth_enterococcus
-0.034062022
log_rel_growth_mesophiles
0.279960223
log_rel_growth_staphylococcus
-0.110932053
log_staphylococcus_density
0.638462827
longitude
-3.059219444
mesophiles_density
3584216.745
nest_type
hole
number_fledging
6
number_sampled_eggs
8
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P4C08
predated
No
public
TRUE
rel_growth_enterobacteriaceae
6.98818285
rel_growth_enterococcus
-0.075433873
rel_growth_staphylococcus
-0.225417025
relative_growth_mesophiles
0.905286206
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E4C10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.39b.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
390
species name
Upupa epops
staphylococcus_density
3.349735275
storing_days
6
unhatched_eggs
Missing: Not provided
year
2007