1632.E3G11.r.EMPbird.v4.NoIndex.L001; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.778.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076341
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:15:06Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E3G11.r.EMPbird.v4.NoIndex.L001
abandoned
No
altitude
0
anonymized name
E3G11
arcsine_fledge_success_brood
Missing: Not collected
arcsine_fledge_success_clutch
Missing: Not collected
arcsine_hatching_success
1.209429203
area
Hernan-Valle
assigned_from_geo
TRUE
backup
FALSE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
7
clutch_size
8
code_id_statistica
35
coll_date_juliane_days
131
collection date
5/12/07 0:00
collection_timestamp
5/12/07
comments_in_spanish
Depredado
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
5/14/07
depth
0
dna_extracted
TRUE
elevation
1134
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
1002407.749
enterococcus_density
5941.194069
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
773.2
estefania_plates
3G11
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
Missing: Not collected
fledge_success_clutch
Missing: Not collected
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/17/07
hatching_success
0.875
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.778.2
host taxid
57439
latitude
37.37229722
lay_date_juliane_days
111
laying_date
7/21/07
log_enterobacteriaceae_density
6.001044849
log_enterococcus_density
3.773946832
log_mesophiles_density
6.369021386
log_rel_growth_enterobact
-1.1356622
log_rel_growth_enterococcus
-0.573904566
log_rel_growth_mesophiles
-0.745966415
log_rel_growth_staphylococcus
1.164001528
log_staphylococcus_density
1.164001528
longitude
-3.066655556
mesophiles_density
2338951.415
nest_type
hole
number_fledging
Missing: Not provided
number_sampled_eggs
8
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P3D06
predated
brood phase
public
TRUE
rel_growth_enterobacteriaceae
-0.926829201
rel_growth_enterococcus
-0.733255524
rel_growth_staphylococcus
13.58819393
relative_growth_mesophiles
-0.820512758
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E3G11.r.EMPbird.v4.NoIndex.L001
sample type
bird egg shell
sample_nest
Abubilla.778.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
313
species name
Upupa epops
staphylococcus_density
13.58819393
storing_days
2
unhatched_eggs
1
year
2007