1632.E5D09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences; Bird Egg Shells from Spain
bird metagenome
Bird Egg Shells from nest Abubilla.800.2
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076510
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:26Z
INSDC last update
2016-07-13T01:15:11Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E5D09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E5D09
arcsine_fledge_success_brood
0.089562407
arcsine_fledge_success_clutch
0.075665074
arcsine_hatching_success
1.182995558
area
Benalua
assigned_from_geo
TRUE
backup
TRUE
bird_family
Upuidae
bird_order
Upupiformes
broken_eggs
0
brood_size
6
clutch_size
7
code_id_statistica
44
coll_date_juliane_days
156
collection date
6/6/07 0:00
collection_timestamp
6/6/07
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
6/20/07
depth
0
dna_extracted
TRUE
elevation
907
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
4837015.17
enterococcus_density
31823.46822
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
800-2
estefania_plates
5D09
extracted DNA avail now
TRUE
feathers
FALSE
fledge_success_brood
0.8
fledge_success_clutch
0.571428571
fledging_date
6/25/07
geo loc name
Spain:Hoya de Guadix
hatching_date
6/6/07
hatching_success
0.857
hatching_synchrony
asyn
host common name
Eurasian hoopoe
host scientific name
Upupiformes
host subject id
Abubilla.800.2
host taxid
57439
latitude
37.32783056
lay_date_juliane_days
132
laying_date
8/11/07
log_enterobacteriaceae_density
6.684577539
log_enterococcus_density
4.502761155
log_mesophiles_density
7.169251871
log_rel_growth_enterobact
-0.581584339
log_rel_growth_enterococcus
-0.365466573
log_rel_growth_mesophiles
-2.099894837
log_rel_growth_staphylococcus
0.073435503
log_staphylococcus_density
0.213902572
longitude
-3.138858333
mesophiles_density
14765625.26
nest_type
hole
number_fledging
4
number_sampled_eggs
7
observer
Manolo
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
FALSE
platero_plates
P5C05
predated
No
public
TRUE
rel_growth_enterobacteriaceae
-0.737930995
rel_growth_enterococcus
-0.568944266
rel_growth_staphylococcus
0.184228485
relative_growth_mesophiles
-0.992054794
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E5D09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Abubilla.800.2
sample_progress
sequenced (16S)
sampling time
2
sampling_code_id
548
species name
Upupa epops
staphylococcus_density
0.636449364
storing_days
14
unhatched_eggs
1
year
2007