Bird Egg Shells from Spain; 1632.E1F08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
bird metagenome
Bird Egg Shells from nest Corneja.CorDav.1
ENA first public
2016-07-13
ENA last update
2016-07-13
External Id
SAMEA4076104
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-07-13T17:01:27Z
INSDC last update
2016-07-13T01:14:58Z
INSDC status
public
Submitter Id
qiita_sid_1632:1632.E1F08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned
No
altitude
0
anonymized name
E1F08
arcsine_fledge_success_brood
0
arcsine_fledge_success_clutch
0
arcsine_hatching_success
Missing: Not collected
area
Sierra Maria
assigned_from_geo
TRUE
backup
FALSE
bird_family
Corvidae
bird_order
Passeriformes
broken_eggs
1
brood_size
3
clutch_size
4
code_id_statistica
203
coll_date_juliane_days
114
collection date
4/17/07 0:00
collection_timestamp
4/17/07
comments_in_spanish
Desparece un huevo durante la incubacion. Depredado con pollos
common name
organismal metagenome
country
GAZ:Spain
country_nation
Spain
country_region
Hoya de Guadix
culturing_date
4/19/07
depth
0
dna_extracted
TRUE
elevation
1199
empo_0
EMP sample
empo_1
Host-associated
empo_2
Animal
empo_3
Animal surface
enterobacteriaceae_density
47.04764587
enterococcus_density
0.108906588
env biome
mediterranean shrubland biome
env feature
nest of bird
env matter
egg
env package
host-associated
eppendorf_name
CORDAV.1
estefania_plates
1F08
extracted DNA avail now
TRUE
feathers
TRUE
fledge_success_brood
0
fledge_success_clutch
0
fledging_date
Missing: Not collected
geo loc name
Spain:Hoya de Guadix
hatching_date
5/4/07
hatching_success
Missing: Not collected
hatching_synchrony
asyn
host common name
Carrion crow
host scientific name
Passeriformes
host subject id
Corneja.CorDav.1
host taxid
181097
latitude
37.71095556
lay_date_juliane_days
100
laying_date
7/10/07
log_enterobacteriaceae_density
1.681672114
log_enterococcus_density
0.044894963
log_mesophiles_density
0
log_rel_growth_enterobact
6.212524592
log_rel_growth_enterococcus
0.256135032
log_rel_growth_mesophiles
8.228183004
log_rel_growth_staphylococcus
-0.044894963
log_staphylococcus_density
0.044894963
longitude
-2.164844444
mesophiles_density
0
nest_type
open
number_fledging
0
number_sampled_eggs
4
observer
David
physical_location_1
U Granada
physical_specimen_location
CCME
physical_specimen_remaining
TRUE
plants
TRUE
predated
brood phase
public
TRUE
rel_growth_enterobacteriaceae
1631264.278
rel_growth_enterococcus
0.803578428
rel_growth_staphylococcus
-0.098210786
relative_growth_mesophiles
169115339.4
required_sample_info_status
completed
sample name
qiita_sid_1632:1632.E1F08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type
bird egg shell
sample_nest
Corneja.CorDav.1
sample_progress
sequenced (16S)
sampling time
1
sampling_code_id
69
species name
Corvus corone
staphylococcus_density
0.108906588
storing_days
2
unhatched_eggs
0
year
2007