Astacus astacus
We generated RNA-seq data to assemble the complete transcriptome of the noble crayfish from four tissues (abdominal muscle, hepatopancreas, ovaries, antennal gland). A total of 194.228 million paired-end reads of 100 base pairs long were generated. The transcriptome was assembled de novo using Trinity software, producing 45,415 transcripts of which 14,559 were found to contain open reading frames with predicted gene function. The Transrate software revealed that 91% of the total reads were realigned to the assembly. BUSCO analysis furthermore indicated that our assembly is 64% complete.
isolate
female noble crayfish
host
Astacus astacus LINNAEUS 1758
collection_date
2014-07-01
geo_loc_name
Germany: crayfish farm Oeversee
tissue
hepatopancreas, ovaries, green glands, abdominal musculature
identified_by
Helmut Jeske
sex
female
BioSampleModel
Invertebrate