chicken gut metagenome
treatment group (cloacal administration of 25 microgram purified recombinant FlaC in 200 microlitre sterile cell culture-grade PBS at two weeks, 3 weeks and 3.5 weeks after hatching)
ENA first public
2015-11-26
ENA last update
2016-10-21
External Id
SAMEA3663821
INSDC center alias
MHH
INSDC center name
Hannover Medical School
INSDC first public
2015-11-26T17:01:14Z
INSDC last update
2016-10-21T09:39:57Z
INSDC status
public
Submitter Id
Chicken_10
adapters
TCAG
collection date
2015-03-23
environment (biome)
animal facility
environment (feature)
animal facility
environment (material)
air
geographic location (country and/or sea)
Germany
geographic location (latitude)
52.37
geographic location (longitude)
9.73
host age
4
host body site
caecum
host common name
white Leghorn layer chicken
host infra specific name
white Leghorn layer chicken
host subject id
chicken 10
host taxid
9031
host-associated environmental package
host-associated
investigation type
mimarks-survey
multiplex identifiers
ACGCTCGACA
pcr primers
8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R
project name
Novel immunomodulatory flagellin-like protein FlaC in Campylobacter jejuni and other Campylobacterales
sample name
Chicken_10
sequencing method
pyrosequencing
target gene
16S rDNA
target subfragment
V1 - V3