Severe acute respiratory syndrome coronavirus 2
isolate
SARS-CoV-2/Human/USA/CA-CDC-STM-000010414/2021
GISAID_virus_name
hCoV-19/USA/CA-CDC-STM-000010414/2021
collected_by
Helix
collection_date
2021-02-07
geo_loc_name
USA: California
lat_lon
missing
sequenced_by
Illumina
isolation_source
nasal
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
66
host_anatomical_part
Nasal
collection_device
Swabs
collection_method
Swabs
diagnostic_gene_name_1
ms2
diagnostic_pcr_protocol_1
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_1
28.831783295
diagnostic_gene_name_2
n gene
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_2
20.449066162
diagnostic_gene_name_3
orf1ab
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_3
20.766370773
diagnostic_gene_name_4
s gene
diagnostic_pcr_protocol_4
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_4
21.297025681
lineage/clade name
B.1.413
host_race
Asian
BioSampleModel
Pathogen.cl