Severe acute respiratory syndrome coronavirus 2
isolate
SARS-CoV-2/Human/USA/CA-CDC-STM-000010576/2021
GISAID_virus_name
hCoV-19/USA/CA-CDC-STM-000010576/2021
collected_by
Helix
collection_date
2021-02-08
geo_loc_name
USA: California
lat_lon
missing
sequenced_by
Illumina
isolation_source
nasal
host
Homo sapiens
host_disease
COVID-19
host_sex
female
host_age
62
host_anatomical_part
Nasal
collection_device
Swabs
collection_method
Swabs
diagnostic_gene_name_1
ms2
diagnostic_pcr_protocol_1
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_1
30.500566483
diagnostic_gene_name_2
n gene
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_2
26.829423904
diagnostic_gene_name_3
orf1ab
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_3
27.06599617
diagnostic_gene_name_4
s gene
diagnostic_pcr_protocol_4
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_4
27.760757446
lineage/clade name
B.1.243
host_race
Latino
BioSampleModel
Pathogen.cl