Japan Trench sediment sample from center of clam patch
marine sediment metagenome
ENA first public
2014-10-06
ENA last update
2016-10-21
External Id
SAMEA2178030
INSDC center alias
MPIM
INSDC center name
Max Planck Institute for Marine Microbiology
INSDC first public
2014-10-06T15:47:43Z
INSDC last update
2016-10-21T09:35:33Z
INSDC status
public
Submitter Id
YK06-05_957
amount or size of sample collected
5
broker name
European Nucleotide Archive
chimera check
Mallard
collection date
2006-06-08
depth
0.1
environment (biome)
temperate shelf and sea
environment (feature)
cold seep
environment (material)
sediment
geographic location (countryand/orsea,region)
Japan
geographic location (elevation)
-5346
geographic location (latitude)
39.10593
geographic location (longitude)
143.59270
investigation type
mimarks-survey
library vector
p-GEM T-Easy
methane concentration range
0.96
nucleic acid amplification
PCR
nucleic acid extraction
Zhou et al 1996 and Wizard clean-up (Promega)
pressure
535
project name
Anaerobic methanotrophic community at 5346 m-deep vesicomyid clam colony in the Japan Trench
sample collection device or method
Pushcore
sample name
YK06-05_957
sample storage duration
2
sample storage location
MPI Bremen
sample storage temperature
-20
sediment environmental package
sediment
sequence quality check
manual
sequencing method
Sanger
sulfate concentration range
1-16 mM
temperature
1.3