human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947501
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:41Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030041
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
65.0
age_corrected
65.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000030041
antibiotic_history
Not provided
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1950.0
bmi
53.21
bmi_cat
Obese
bmi_corrected
53.21
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
I tend to have diarrhea (watery stool) - Type 5, 6 and 7
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
01/09/2015
collection month
January
collection season
Winter
collection time
09:00
collection_timestamp
2015-01-09 09:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Rarely (a few times/month)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
Diagnosed by a medical professional (doctor, physician assistant)
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
78.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
None of the above
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by an alternative medicine practitioner
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
443b636792bc3335c20efff395739f479b475482f5df43b9354b4322b19361a9d117fa1c83aaa1a125fb289060ee3a5e8ef3fa5df1592768daf3e8f7896da218
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
53.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-1.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Never
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Occasionally (1-2 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030041
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
Less than 5 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
false
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
fdc4bf07ec2a0342
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.22317810100000002
vioscreen_a_cal
25.79753318
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
10.0833155
vioscreen_addsugar
43.93111622
vioscreen_adsugtot
41.82635916
vioscreen_age
215.0
vioscreen_alanine
6.383288072999999
vioscreen_alcohol
3.364383562
vioscreen_alcohol_servings
0.22318000000000002
vioscreen_alphacar
1590.4625
vioscreen_alphtoce
11.08712342
vioscreen_alphtoco
9.689809637
vioscreen_arginine
6.962958851000001
vioscreen_ash
27.53356164
vioscreen_aspartam
0.0
vioscreen_aspartic
13.19010863
vioscreen_avcarb
216.6751284
vioscreen_bcodeid
Not provided
vioscreen_betacar
7802.45411
vioscreen_betacryp
142.75376709999998
vioscreen_betaine
116.72803940000001
vioscreen_betatoco
0.282794545
vioscreen_biochana
0.011863015
vioscreen_bmi
Not provided
vioscreen_caffeine
435.9491866
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.11219
vioscreen_calcium_servings
3.77274
vioscreen_calories
2425.623973
vioscreen_carbo
245.569756
vioscreen_cholest
499.86943489999993
vioscreen_choline
637.4925942000001
vioscreen_clac9t11
0.20301373600000003
vioscreen_clat10c12
0.052876715
vioscreen_copper
1.885177654
vioscreen_coumest
0.076986302
vioscreen_cystine
1.4998630469999998
vioscreen_d_cheese
0.7334520309999999
vioscreen_d_milk
0.78906852
vioscreen_d_tot_soym
2.112191981
vioscreen_d_total
2.112191981
vioscreen_d_yogurt
0.5874246679999999
vioscreen_daidzein
0.55852055
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.268575423
vioscreen_discfat_oil
19.81876873
vioscreen_discfat_sol
52.87609161
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000191781
vioscreen_f_citmlb
0.483150618
vioscreen_f_nj_citmlb
0.43493150700000005
vioscreen_f_nj_other
1.064739739
vioscreen_f_nj_total
1.499698503
vioscreen_f_other
1.064739739
vioscreen_f_total
1.547917781
vioscreen_fat
106.9195848
vioscreen_fiber
28.88279645
vioscreen_fibh2o
9.349013403999999
vioscreen_fibinso
19.54920404
vioscreen_finished
8/21/15
vioscreen_fish_servings
5.416919999999999
vioscreen_fol_deqv
504.3827055
vioscreen_fol_nat
441.61934929999995
vioscreen_fol_syn
36.90158926
vioscreen_formontn
0.002493151
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.1
vioscreen_fructose
14.97118204
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.003835516
vioscreen_g_total
2.121150772
vioscreen_g_whl
0.11731506800000001
vioscreen_galactos
0.948191771
vioscreen_gammtoco
12.53498502
vioscreen_gender
false
vioscreen_genistn
0.6897259859999999
vioscreen_glac
113.303018
vioscreen_gltc
124.95949270000001
vioscreen_glucose
17.67539999
vioscreen_glutamic
21.40682122
vioscreen_glycine
5.3863562179999995
vioscreen_glycitn
0.115698629
vioscreen_grams
4833.521575
vioscreen_hei2010_dairy
6.7
vioscreen_hei2010_empty_calories
15.1
vioscreen_hei2010_fatty_acids
1.8
vioscreen_hei2010_fruit
4.0
vioscreen_hei2010_greens_beans
4.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
65.8
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
3.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.3
vioscreen_hei_drk_g_org_veg_leg
4.0
vioscreen_hei_fruit
4.0
vioscreen_hei_grains
1.5
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
6.7
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
6.8
vioscreen_hei_sat_fat
0.5
vioscreen_hei_score
61.0
vioscreen_hei_sodium
2.4
vioscreen_hei_sol_fat_alc_add_sug
14.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.2
vioscreen_height
Not provided
vioscreen_histidin
3.6231508860000003
vioscreen_inositol
0.119013705
vioscreen_iron
13.82654645
vioscreen_isoleuc
5.89041029
vioscreen_isomalt
0.0
vioscreen_joules
10148.81575
vioscreen_juice_servings
0.09641
vioscreen_lactitol
0.0
vioscreen_lactose
19.68375428
vioscreen_legumes
0.00720548
vioscreen_leucine
9.872384016
vioscreen_line_gi
508.29833049999996
vioscreen_low_fat_dairy_serving
0.75222
vioscreen_lutzeax
7003.087670999999
vioscreen_lycopene
1974.15
vioscreen_lysine
9.851343108
vioscreen_m_egg
1.016383592
vioscreen_m_fish_hi
2.151698617
vioscreen_m_fish_lo
0.9444931240000001
vioscreen_m_frank
0.169150679
vioscreen_m_meat
4.031972389
vioscreen_m_mpf
9.58778026
vioscreen_m_nutsd
0.393835616
vioscreen_m_organ
0.0
vioscreen_m_poult
2.2905204880000003
vioscreen_m_soy
0.016465754
vioscreen_magnes
465.2257277
vioscreen_maltitol
0.0
vioscreen_maltose
1.706657514
vioscreen_mangan
6.524272928999999
vioscreen_mannitol
0.263780798
vioscreen_methhis3
33.96583637
vioscreen_methion
3.161014087
vioscreen_mfa141
0.269671234
vioscreen_mfa161
2.49671263
vioscreen_mfa181
34.80865796
vioscreen_mfa201
0.561780788
vioscreen_mfa221
0.366904105
vioscreen_mfatot
38.81922892
vioscreen_multi_calcium_avg
57.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
2.0
vioscreen_natoco
9.689809637
vioscreen_nccglbr
164.4177333
vioscreen_nccglgr
115.01240370000001
vioscreen_niacin
32.75405875
vioscreen_niacineq
55.7416845
vioscreen_nitrogen
20.22074058
vioscreen_non_fried_fish_servings
5.416919999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.099369248
vioscreen_oxalic
472.7982449
vioscreen_oxalicm
431.1526113
vioscreen_pantothe
8.940275177
vioscreen_pectins
5.82117736
vioscreen_pfa182
14.52498662
vioscreen_pfa183
1.997753405
vioscreen_pfa184
0.084465758
vioscreen_pfa204
0.264602724
vioscreen_pfa205
0.283205487
vioscreen_pfa225
0.11953425
vioscreen_pfa226
0.6149588810000001
vioscreen_pfatot
18.06712329
vioscreen_phenylal
5.414137414
vioscreen_phosphor
1897.1614730000001
vioscreen_phytic
599.4554366
vioscreen_pinitol
0.004849315
vioscreen_potass
5755.45274
vioscreen_procdate
10/28/15
vioscreen_proline
6.970053644
vioscreen_protanim
100.6302226
vioscreen_protein
125.6964148
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
25.05718108
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
184.0
vioscreen_retinol
516.8547089
vioscreen_rgrain
1.3929863080000002
vioscreen_ribofla
2.5950961180000003
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.26636
vioscreen_satoco
0.0
vioscreen_selenium
146.8528574
vioscreen_serine
5.713314025
vioscreen_sfa100
0.8393973570000001
vioscreen_sfa120
1.266958911
vioscreen_sfa140
3.874438142
vioscreen_sfa160
21.56501632
vioscreen_sfa170
0.160821909
vioscreen_sfa180
9.374603355
vioscreen_sfa200
0.13276711
vioscreen_sfa220
0.11665752900000001
vioscreen_sfa40
0.9092877109999999
vioscreen_sfa60
0.5218081960000001
vioscreen_sfa80
0.39430140700000005
vioscreen_sfatot
39.66492937
vioscreen_sodium
4200.910959000001
vioscreen_sorbitol
0.720657474
vioscreen_srvid
20461.0
vioscreen_starch
100.8577162
vioscreen_started
8/21/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
41.44931239
vioscreen_sweet_servings
0.71233
vioscreen_tagatose
5.66923293
vioscreen_tfa161t
0.098136985
vioscreen_tfa181t
2.789479713
vioscreen_tfa182t
0.508109524
vioscreen_tgrain
2.358575356
vioscreen_thiamin
1.613260013
vioscreen_threonin
5.174574593
vioscreen_time
31.0
vioscreen_totaltfa
3.432191446
vioscreen_totcla
0.254876751
vioscreen_totfolat
478.52080480000006
vioscreen_totsugar
97.553628
vioscreen_tryptoph
1.380136986
vioscreen_tyrosine
4.498739833
vioscreen_user_id
20461.0
vioscreen_v_drkgr
0.466109561
vioscreen_v_orange
0.311041093
vioscreen_v_other
1.579150725
vioscreen_v_potato
2.775835429
vioscreen_v_starcy
0.071260275
vioscreen_v_tomato
0.288465735
vioscreen_v_total
5.491807911
vioscreen_valine
6.752301611
vioscreen_veg5_day
7.8
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
11.0
vioscreen_visit
1.0
vioscreen_vita_iu
16170.21233
vioscreen_vita_rae
1239.2771400000001
vioscreen_vita_re
1961.698973
vioscreen_vitb12
8.36802828
vioscreen_vitb6
3.297123154
vioscreen_vitc
144.29450980000001
vioscreen_vitd
15.68265732
vioscreen_vitd2
0.001178082
vioscreen_vitd3
15.68145066
vioscreen_vitd_iu
627.3062927999999
vioscreen_vite_iu
14.43621709
vioscreen_vitk
319.8681293
vioscreen_water
4364.274658
vioscreen_weight
Not provided
vioscreen_wgrain
0.9656985770000001
vioscreen_whole_grain_servings
0.11732000000000001
vioscreen_xylitol
0.051589040999999995
vioscreen_zinc
15.71200369
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
140.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never