human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947464
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:39Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000012132
acid_reflux
Not provided
acne medication
false
acne_medication_otc
true
add_adhd
I do not have this condition
age cat
Not provided
age years
39.0
age_corrected
Not provided
alcohol consumption
Not provided
alcohol_frequency
Not provided
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000012132
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1976.0
bmi
18.41
bmi_cat
Underweight
bmi_corrected
18.41
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2013-11-13
collection month
November
collection season
Fall
collection time
10:30
collection_timestamp
2013-11-13 10:30
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore but do not eat red meat
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
19.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Regularly (3-5 times/week)
flu_vaccine_date
6 months
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
180.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Occasionally (1-2 times/week)
host common name
human
host subject id
ef8c61151921f30e9d68b6f00535b12915eadd1af022d61c5009c08ee0169bcc210e501861f8a7462776023a55b913ac65ada3ad54e4aa287ca680ee88b2162c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
40.6
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-74.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Occasionally (1-2 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Daily
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Regularly (3-5 times/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000012132
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
false
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
9a4b80ac9e383aee
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
true
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
1.442712402
vioscreen_a_cal
178.7510916
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.858108812999999
vioscreen_addsugar
36.58810734
vioscreen_adsugtot
33.65747806
vioscreen_age
214.0
vioscreen_alanine
4.449260555
vioscreen_alcohol
22.15876632
vioscreen_alcohol_servings
1.44271
vioscreen_alphacar
1302.664127
vioscreen_alphtoce
14.03115101
vioscreen_alphtoco
12.75997164
vioscreen_arginine
5.799369917000001
vioscreen_ash
22.97984
vioscreen_aspartam
0.0
vioscreen_aspartic
9.364658471
vioscreen_avcarb
212.5797089
vioscreen_bcodeid
Not provided
vioscreen_betacar
8002.298629999999
vioscreen_betacryp
122.81571059999999
vioscreen_betaine
98.02581336
vioscreen_betatoco
0.44734246200000005
vioscreen_biochana
0.017369863
vioscreen_bmi
Not provided
vioscreen_caffeine
73.1914223
vioscreen_calcium
true
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
250.0
vioscreen_calcium_freq
Less than once per week
vioscreen_calcium_from_dairy_servings
1.9909
vioscreen_calcium_servings
4.2849900000000005
vioscreen_calories
2176.989212
vioscreen_carbo
243.6830051
vioscreen_cholest
124.52190709999999
vioscreen_choline
328.7709118
vioscreen_clac9t11
0.050027403
vioscreen_clat10c12
0.011342467
vioscreen_copper
1.830739813
vioscreen_coumest
0.092547942
vioscreen_cystine
1.186712479
vioscreen_d_cheese
0.611698642
vioscreen_d_milk
1.004082165
vioscreen_d_tot_soym
2.261561564
vioscreen_d_total
1.99090409
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
10.25169962
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.6370687409999998
vioscreen_discfat_oil
41.85043878
vioscreen_discfat_sol
20.65252167
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.00139726
vioscreen_f_citmlb
0.51331507
vioscreen_f_nj_citmlb
0.509561659
vioscreen_f_nj_other
0.845753458
vioscreen_f_nj_total
1.355315075
vioscreen_f_other
0.845753458
vioscreen_f_total
1.359068486
vioscreen_fat
81.22784140000002
vioscreen_fiber
31.05840111
vioscreen_fibh2o
8.409478007
vioscreen_fibinso
22.35296046
vioscreen_finished
12/21/14
vioscreen_fish_servings
2.3734599999999997
vioscreen_fol_deqv
837.2049658
vioscreen_fol_nat
335.4955693
vioscreen_fol_syn
295.04702480000003
vioscreen_formontn
0.002657534
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.02192
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.7
vioscreen_fructose
18.36523438
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
2.2297259609999998
vioscreen_g_total
4.677013993
vioscreen_g_whl
2.447178002
vioscreen_galactos
0.569808207
vioscreen_gammtoco
10.57164491
vioscreen_gender
false
vioscreen_genistn
13.63246736
vioscreen_glac
92.63240582
vioscreen_gltc
104.3113121
vioscreen_glucose
18.6848499
vioscreen_glutamic
19.13348138
vioscreen_glycine
4.047398063
vioscreen_glycitn
2.863917688
vioscreen_grams
2950.320548
vioscreen_hei2010_dairy
8.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
3.9
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
86.9
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.5
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
7.5
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
3.9
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
9.1
vioscreen_hei_score
83.9
vioscreen_hei_sodium
2.0
vioscreen_hei_sol_fat_alc_add_sug
18.6
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
3.7
vioscreen_height
Not provided
vioscreen_histidin
2.5976713
vioscreen_inositol
0.21158902899999998
vioscreen_iron
25.11325985
vioscreen_isoleuc
4.343396832
vioscreen_isomalt
0.0
vioscreen_joules
9108.517808
vioscreen_juice_servings
0.007529999999999999
vioscreen_lactitol
0.0
vioscreen_lactose
18.15106887
vioscreen_legumes
0.578465752
vioscreen_leucine
7.585178992
vioscreen_line_gi
468.9893836
vioscreen_low_fat_dairy_serving
1.3329600000000001
vioscreen_lutzeax
4891.510616
vioscreen_lycopene
5569.977397
vioscreen_lysine
6.23353422
vioscreen_m_egg
0.321972614
vioscreen_m_fish_hi
0.713589018
vioscreen_m_fish_lo
0.638876719
vioscreen_m_frank
0.09205479
vioscreen_m_meat
0.7476438759999999
vioscreen_m_mpf
3.3347669630000003
vioscreen_m_nutsd
2.219808166
vioscreen_m_organ
0.0
vioscreen_m_poult
1.142575366
vioscreen_m_soy
1.835507077
vioscreen_magnes
482.06515410000003
vioscreen_maltitol
0.0
vioscreen_maltose
2.87509565
vioscreen_mangan
5.91969847
vioscreen_mannitol
0.349780838
vioscreen_methhis3
12.20684932
vioscreen_methion
1.992438497
vioscreen_mfa141
0.065726032
vioscreen_mfa161
0.909205356
vioscreen_mfa181
31.75098191
vioscreen_mfa201
0.501315057
vioscreen_mfa221
0.10375341099999999
vioscreen_mfatot
33.65665935
vioscreen_multi_calcium_avg
171.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
6.0
vioscreen_natoco
12.75314908
vioscreen_nccglbr
162.6883134
vioscreen_nccglgr
113.8105736
vioscreen_niacin
27.49526434
vioscreen_niacineq
46.0747485
vioscreen_nitrogen
15.93671607
vioscreen_non_fried_fish_servings
2.3734599999999997
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.196931855
vioscreen_oxalic
383.3287671
vioscreen_oxalicm
373.9322774
vioscreen_pantothe
5.4216435679999995
vioscreen_pectins
4.343233291000001
vioscreen_pfa182
18.35586473
vioscreen_pfa183
1.8354799869999998
vioscreen_pfa184
0.024931505
vioscreen_pfa204
0.083232874
vioscreen_pfa205
0.09660274599999999
vioscreen_pfa225
0.045369862000000004
vioscreen_pfa226
0.19454793
vioscreen_pfatot
20.79304366
vioscreen_phenylal
4.571096426
vioscreen_phosphor
1724.378082
vioscreen_phytic
1226.363699
vioscreen_pinitol
0.052986307
vioscreen_potass
3973.346575
vioscreen_procdate
10/28/15
vioscreen_proline
6.22504147
vioscreen_protanim
46.62840325
vioscreen_protein
97.27829623
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
50.644777399999995
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
676.0
vioscreen_retinol
477.12277400000005
vioscreen_rgrain
3.5138083260000004
vioscreen_ribofla
2.391151073
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
2.2374
vioscreen_satoco
0.014931506
vioscreen_selenium
119.5186644
vioscreen_serine
4.880520588
vioscreen_sfa100
0.297287656
vioscreen_sfa120
0.5789589239999999
vioscreen_sfa140
1.530547845
vioscreen_sfa160
11.61049203
vioscreen_sfa170
0.091424665
vioscreen_sfa180
4.333562313
vioscreen_sfa200
0.287479453
vioscreen_sfa220
0.405863054
vioscreen_sfa40
0.331068483
vioscreen_sfa60
0.155616447
vioscreen_sfa80
0.155808216
vioscreen_sfatot
20.30581122
vioscreen_sodium
3868.4229450000003
vioscreen_sorbitol
1.067232733
vioscreen_srvid
16513.0
vioscreen_starch
94.60585402
vioscreen_started
12/21/14
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
34.47556453
vioscreen_sweet_servings
0.20756999999999998
vioscreen_tagatose
3.566657748
vioscreen_tfa161t
0.039178085
vioscreen_tfa181t
0.95273981
vioscreen_tfa182t
0.29471237
vioscreen_tgrain
6.2331777079999995
vioscreen_thiamin
2.109643889
vioscreen_threonin
3.65989104
vioscreen_time
27.0
vioscreen_totaltfa
1.304054825
vioscreen_totcla
0.062328772000000005
vioscreen_totfolat
630.5422089
vioscreen_totsugar
94.57938784
vioscreen_tryptoph
1.1144386609999999
vioscreen_tyrosine
3.4375615369999997
vioscreen_user_id
16513.0
vioscreen_v_drkgr
0.5084383610000001
vioscreen_v_orange
0.349479466
vioscreen_v_other
0.9652053620000001
vioscreen_v_potato
0.137616448
vioscreen_v_starcy
0.073835619
vioscreen_v_tomato
0.488657536
vioscreen_v_total
2.523260247
vioscreen_valine
5.040438048
vioscreen_veg5_day
3.7
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
5.0
vioscreen_visit
1.0
vioscreen_vita_iu
16116.226030000002
vioscreen_vita_rae
1203.376199
vioscreen_vita_re
1929.629966
vioscreen_vitb12
7.113040454
vioscreen_vitb6
2.690219325
vioscreen_vitc
119.9581122
vioscreen_vitd
9.273616759
vioscreen_vitd2
0.698794514
vioscreen_vitd3
8.574822078
vioscreen_vitd_iu
370.9446704
vioscreen_vite_iu
19.025644800000002
vioscreen_vitk
255.0894264
vioscreen_water
2500.074144
vioscreen_weight
Not provided
vioscreen_wgrain
2.719342459
vioscreen_whole_grain_servings
2.44718
vioscreen_xylitol
0.066082189
vioscreen_zinc
17.08659969
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
59.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Rarely (less than once/week)
whole_grain_frequency
Regularly (3-5 times/week)