human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947470
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:39Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000023793
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
61.0
age_corrected
61.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
true
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000023793
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1954.0
bmi
24.89
bmi_cat
Normal
bmi_corrected
24.89
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-08-21
collection month
August
collection season
Summer
collection time
07:00
collection_timestamp
2015-08-21 07:00
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Occasionally (1-2 times/week)
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Mideast
elevation
246.5
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Indoors
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Regularly (3-5 times/week)
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Rarely (less than once/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
728e2fbd2878a83ed43cc9e80077e7d4c7b656139893c0160689c689b40b05db7af2710442abc1cbec3d5c61eb821858afb945b1292b26ab686f2a9beb0b5ec0
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
42.1
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-80.0
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Occasionally (1-2 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Rarely (less than once/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000023793
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Not provided
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
8 or more hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
PA
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Rarely (less than once/week)
sugary_sweets_frequency
Regularly (3-5 times/week)
survey_id
a9049486904a4c5b
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Occasionally (1-2 times/week)
vioscreen_a_bev
0.7349862709999999
vioscreen_a_cal
105.5584118
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
13.83019183
vioscreen_addsugar
95.83493151
vioscreen_adsugtot
74.25959439
vioscreen_age
215.0
vioscreen_alanine
3.900986596
vioscreen_alcohol
10.62369836
vioscreen_alcohol_servings
0.7349899999999999
vioscreen_alphacar
116.59576200000001
vioscreen_alphtoce
12.48682042
vioscreen_alphtoco
10.96117963
vioscreen_arginine
4.595752956
vioscreen_ash
24.67337596
vioscreen_aspartam
0.0
vioscreen_aspartic
7.770794761
vioscreen_avcarb
270.33082189999993
vioscreen_bcodeid
Not provided
vioscreen_betacar
6354.259589
vioscreen_betacryp
33.03907053
vioscreen_betaine
379.0360445
vioscreen_betatoco
0.560794485
vioscreen_biochana
0.004767123
vioscreen_bmi
Not provided
vioscreen_caffeine
426.59152400000005
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.7858400000000003
vioscreen_calcium_servings
6.37849
vioscreen_calories
2416.819521
vioscreen_carbo
298.8820205
vioscreen_cholest
273.1067851
vioscreen_choline
417.0262414
vioscreen_clac9t11
0.12742467400000002
vioscreen_clat10c12
0.022164384
vioscreen_copper
1.8630958030000002
vioscreen_coumest
0.21260273600000001
vioscreen_cystine
1.073835733
vioscreen_d_cheese
0.652986291
vioscreen_d_milk
1.7552878180000002
vioscreen_d_tot_soym
2.7858354960000002
vioscreen_d_total
2.7858354960000002
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.755178206
vioscreen_database
NDSR - V44
vioscreen_delttoco
2.595506809
vioscreen_discfat_oil
28.83561376
vioscreen_discfat_sol
42.64299015
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.000356164
vioscreen_f_citmlb
0.300410942
vioscreen_f_nj_citmlb
0.24917807399999997
vioscreen_f_nj_other
0.531835603
vioscreen_f_nj_total
0.7810411429999999
vioscreen_f_other
0.581424661
vioscreen_f_total
0.8818631109999999
vioscreen_fat
90.31080908
vioscreen_fiber
28.50720783
vioscreen_fibh2o
8.812465887
vioscreen_fibinso
19.67709359
vioscreen_finished
7/17/15
vioscreen_fish_servings
0.86731
vioscreen_fol_deqv
432.3369007
vioscreen_fol_nat
318.0932577
vioscreen_fol_syn
67.1250107
vioscreen_formontn
0.0013698629999999998
vioscreen_fried_fish_servings
0.18327000000000002
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
1.1
vioscreen_frtsumm
1.8
vioscreen_fructose
17.02235392
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.967835643
vioscreen_g_total
9.798793343
vioscreen_g_whl
6.830986462
vioscreen_galactos
0.6929863079999999
vioscreen_gammtoco
12.77202884
vioscreen_gender
false
vioscreen_genistn
0.931725907
vioscreen_glac
149.4831229
vioscreen_gltc
162.61470459999998
vioscreen_glucose
19.02923133
vioscreen_glutamic
17.83030287
vioscreen_glycine
3.4448499710000005
vioscreen_glycitn
0.173616446
vioscreen_grams
4481.673288
vioscreen_hei2010_dairy
8.9
vioscreen_hei2010_empty_calories
15.8
vioscreen_hei2010_fatty_acids
3.5
vioscreen_hei2010_fruit
2.3
vioscreen_hei2010_greens_beans
3.8
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
77.6
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
6.6
vioscreen_hei2010_veg
2.7
vioscreen_hei2010_whole_fruit
4.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
3.1
vioscreen_hei_fruit
2.3
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
8.9
vioscreen_hei_non_juice_frt
4.0
vioscreen_hei_oils
9.9
vioscreen_hei_sat_fat
5.4
vioscreen_hei_score
75.0
vioscreen_hei_sodium
5.3
vioscreen_hei_sol_fat_alc_add_sug
13.4
vioscreen_hei_veg
2.7
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.339863147
vioscreen_inositol
0.08369863799999999
vioscreen_iron
13.3017043
vioscreen_isoleuc
3.931890117
vioscreen_isomalt
0.0
vioscreen_joules
10111.97534
vioscreen_juice_servings
0.2017
vioscreen_lactitol
0.0
vioscreen_lactose
27.74753318
vioscreen_legumes
0.0830411
vioscreen_leucine
6.868465727
vioscreen_line_gi
686.1916096
vioscreen_low_fat_dairy_serving
0.37384
vioscreen_lutzeax
3991.9386990000003
vioscreen_lycopene
4478.540753
vioscreen_lysine
5.546301771
vioscreen_m_egg
0.621643819
vioscreen_m_fish_hi
0.344164391
vioscreen_m_fish_lo
0.150027393
vioscreen_m_frank
0.87693147
vioscreen_m_meat
0.582986283
vioscreen_m_mpf
3.059178015
vioscreen_m_nutsd
1.788109515
vioscreen_m_organ
0.0
vioscreen_m_poult
1.1050684259999999
vioscreen_m_soy
0.335780815
vioscreen_magnes
537.5390838999999
vioscreen_maltitol
0.0
vioscreen_maltose
20.16432738
vioscreen_mangan
6.873836152000001
vioscreen_mannitol
0.18852052
vioscreen_methhis3
10.75490355
vioscreen_methion
1.943150685
vioscreen_mfa141
0.115835613
vioscreen_mfa161
1.066383592
vioscreen_mfa181
30.13753478
vioscreen_mfa201
0.362684945
vioscreen_mfa221
0.072493153
vioscreen_mfatot
32.01443975
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
10.96117963
vioscreen_nccglbr
239.13388270000002
vioscreen_nccglgr
167.2631207
vioscreen_niacin
30.96607984
vioscreen_niacineq
48.37671233
vioscreen_nitrogen
15.64460349
vioscreen_non_fried_fish_servings
0.68404
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.8183015169999999
vioscreen_oxalic
384.8675942
vioscreen_oxalicm
407.8055223
vioscreen_pantothe
7.732082085
vioscreen_pectins
2.629918263
vioscreen_pfa182
17.7024093
vioscreen_pfa183
1.594411019
vioscreen_pfa184
0.015643834
vioscreen_pfa204
0.125123293
vioscreen_pfa205
0.053342464000000006
vioscreen_pfa225
0.030849316
vioscreen_pfa226
0.12476712599999999
vioscreen_pfatot
19.728305600000002
vioscreen_phenylal
4.065478516000001
vioscreen_phosphor
1922.1945210000001
vioscreen_phytic
1103.699058
vioscreen_pinitol
0.01580822
vioscreen_potass
3651.087329
vioscreen_procdate
10/28/15
vioscreen_proline
6.395369355
vioscreen_protanim
52.17381207
vioscreen_protein
95.52669093
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
43.348164600000004
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
286.0
vioscreen_retinol
737.4767979
vioscreen_rgrain
3.5375889610000004
vioscreen_ribofla
3.0724381960000002
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.6116199999999999
vioscreen_satoco
0.0
vioscreen_selenium
156.585274
vioscreen_serine
4.309451921
vioscreen_sfa100
0.7511506379999999
vioscreen_sfa120
1.78769849
vioscreen_sfa140
3.003150752
vioscreen_sfa160
15.60307015
vioscreen_sfa170
0.160410967
vioscreen_sfa180
7.063452483
vioscreen_sfa200
0.257342446
vioscreen_sfa220
0.336438344
vioscreen_sfa40
0.8495889740000001
vioscreen_sfa60
0.443999993
vioscreen_sfa80
0.44550685100000004
vioscreen_sfatot
31.24925621
vioscreen_sodium
3390.8256850000002
vioscreen_sorbitol
0.48635617600000003
vioscreen_srvid
20173.0
vioscreen_starch
96.91950985
vioscreen_started
7/17/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
49.36518087
vioscreen_sweet_servings
0.92055
vioscreen_tagatose
4.562931427
vioscreen_tfa161t
0.037369863999999996
vioscreen_tfa181t
2.528356599
vioscreen_tfa182t
0.504273966
vioscreen_tgrain
8.017588157999999
vioscreen_thiamin
1.908410645
vioscreen_threonin
3.304658069
vioscreen_time
66.0
vioscreen_totaltfa
3.346136558
vioscreen_totcla
0.152246575
vioscreen_totfolat
385.21815069999997
vioscreen_totsugar
133.9554259
vioscreen_tryptoph
1.044547972
vioscreen_tyrosine
3.269726228
vioscreen_user_id
20173.0
vioscreen_v_drkgr
0.347013688
vioscreen_v_orange
0.235369894
vioscreen_v_other
0.36232876700000005
vioscreen_v_potato
0.22605479999999997
vioscreen_v_starcy
0.081397258
vioscreen_v_tomato
0.172904122
vioscreen_v_total
1.42506856
vioscreen_valine
4.683069349
vioscreen_veg5_day
1.8
vioscreen_vegetable_servings
1.0
vioscreen_vegsumm
2.8
vioscreen_visit
1.0
vioscreen_vita_iu
13172.11781
vioscreen_vita_rae
1273.234675
vioscreen_vita_re
1808.990753
vioscreen_vitb12
7.511698684
vioscreen_vitb6
2.235424637
vioscreen_vitc
61.58656892
vioscreen_vitd
13.11243846
vioscreen_vitd2
3.515452095
vioscreen_vitd3
9.597068975
vioscreen_vitd_iu
524.4975385
vioscreen_vite_iu
16.30013511
vioscreen_vitk
180.677119
vioscreen_water
3987.0702049999995
vioscreen_weight
Not provided
vioscreen_wgrain
4.480026956000001
vioscreen_whole_grain_servings
6.830989999999999
vioscreen_xylitol
0.024219181
vioscreen_zinc
13.0094245
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
65.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)