human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947571
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:26Z
INSDC last update
2017-08-06T13:25:45Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000035383
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000035383
antibiotic_history
6 months
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1968.0
bmi
22.67
bmi_cat
Normal
bmi_corrected
22.67
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
09/11/2015
collection month
September
collection season
Fall
collection time
07:00
collection_timestamp
2015-09-11 07:00
consume_animal_products_abx
No
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
true
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
New England
elevation
85.4
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Outdoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Occasionally (1-2 times/week)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Never
fungal_overgrowth
Self-diagnosed
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
177.0
height_units
centimeters
high_fat_red_meat_frequency
Not provided
homecooked_meals_frequency
Daily
host common name
human
host subject id
fd729d5805bdbd3598776bb4048a1800ce1a49cf641a65beca9be99124400941eaa4694becd9df6e95dd165411250f36e0b2dcad72a763bf175da8f89a559446
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
42.0
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-71.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Self-diagnosed
milk_cheese_frequency
Never
milk_substitute_frequency
Occasionally (1-2 times/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Occasionally (1-2 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Rarely (a few times/month)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000035383
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
Diagnosed by a medical professional (doctor, physician assistant)
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
RI
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Never
survey_id
f81cafd8277856ea
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Rarely (less than once/week)
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
0.162273971
vioscreen_addsugar
0.8304109759999999
vioscreen_adsugtot
0.769369883
vioscreen_age
215.0
vioscreen_alanine
6.250438784
vioscreen_alcohol
0.0
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
8.756521565
vioscreen_alphtoce
8.156904163
vioscreen_alphtoco
7.429835322000001
vioscreen_arginine
6.540382866
vioscreen_ash
16.0330961
vioscreen_aspartam
0.0
vioscreen_aspartic
10.08372619
vioscreen_avcarb
7.204465432
vioscreen_bcodeid
Not provided
vioscreen_betacar
541.3385274
vioscreen_betacryp
21.14701413
vioscreen_betaine
32.71830051
vioscreen_betatoco
0.036821919
vioscreen_biochana
0.001232877
vioscreen_bmi
Not provided
vioscreen_caffeine
385.3676798
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.14920999999999998
vioscreen_calcium_servings
0.87277
vioscreen_calories
1390.681678
vioscreen_carbo
12.43602713
vioscreen_cholest
1021.4998289999999
vioscreen_choline
924.6847603
vioscreen_clac9t11
0.148191781
vioscreen_clat10c12
0.04372603
vioscreen_copper
0.49408214
vioscreen_coumest
0.266109582
vioscreen_cystine
1.476027397
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.149205477
vioscreen_d_tot_soym
0.149205477
vioscreen_d_total
0.149205477
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.32471232
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.630630117
vioscreen_discfat_oil
17.41268461
vioscreen_discfat_sol
50.26205587
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.014493151000000001
vioscreen_f_nj_citmlb
0.0
vioscreen_f_nj_other
0.0
vioscreen_f_nj_total
0.0
vioscreen_f_other
0.0
vioscreen_f_total
0.014493151000000001
vioscreen_fat
101.038003
vioscreen_fiber
5.231589121
vioscreen_fibh2o
4.357150645
vioscreen_fibinso
0.890274006
vioscreen_finished
9/11/15
vioscreen_fish_servings
6.00962
vioscreen_fol_deqv
161.29646830000002
vioscreen_fol_nat
158.56635269999998
vioscreen_fol_syn
1.60816433
vioscreen_formontn
0.00030137
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.0
vioscreen_frtsumm
0.0
vioscreen_fructose
0.601808271
vioscreen_fruit_servings
0.0
vioscreen_g_nwhl
0.074136985
vioscreen_g_total
0.074136985
vioscreen_g_whl
0.0
vioscreen_galactos
0.005452055
vioscreen_gammtoco
6.972192047999999
vioscreen_gender
false
vioscreen_genistn
0.093835616
vioscreen_glac
0.0
vioscreen_gltc
0.0
vioscreen_glucose
3.106821891
vioscreen_glutamic
15.43868392
vioscreen_glycine
5.502219339
vioscreen_glycitn
0.0
vioscreen_grams
2518.810616
vioscreen_hei2010_dairy
0.8
vioscreen_hei2010_empty_calories
11.1
vioscreen_hei2010_fatty_acids
4.8
vioscreen_hei2010_fruit
0.1
vioscreen_hei2010_greens_beans
1.9
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
40.2
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.6
vioscreen_hei2010_veg
0.9
vioscreen_hei2010_whole_fruit
0.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
1.0
vioscreen_hei_fruit
0.1
vioscreen_hei_grains
0.1
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.8
vioscreen_hei_non_juice_frt
0.0
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
34.9
vioscreen_hei_sodium
0.5
vioscreen_hei_sol_fat_alc_add_sug
11.5
vioscreen_hei_veg
0.9
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
3.1414246439999998
vioscreen_inositol
0.00060274
vioscreen_iron
7.866766775
vioscreen_isoleuc
4.979260421
vioscreen_isomalt
0.0
vioscreen_joules
5818.615753
vioscreen_juice_servings
0.02901
vioscreen_lactitol
0.0
vioscreen_lactose
1.384849318
vioscreen_legumes
0.0
vioscreen_leucine
8.473643515
vioscreen_line_gi
0.0
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
1761.852055
vioscreen_lycopene
499.90085619999996
vioscreen_lysine
8.618438972
vioscreen_m_egg
4.0250411360000005
vioscreen_m_fish_hi
3.207369702
vioscreen_m_fish_lo
0.217342471
vioscreen_m_frank
0.41556162399999996
vioscreen_m_meat
5.988219044
vioscreen_m_mpf
9.828493552000001
vioscreen_m_nutsd
0.0
vioscreen_m_organ
0.0
vioscreen_m_poult
0.0
vioscreen_m_soy
0.0
vioscreen_magnes
155.1018301
vioscreen_maltitol
0.0
vioscreen_maltose
0.09386302
vioscreen_mangan
0.777315155
vioscreen_mannitol
0.00739726
vioscreen_methhis3
38.57040882
vioscreen_methion
2.88906852
vioscreen_mfa141
0.243068476
vioscreen_mfa161
2.7381645310000002
vioscreen_mfa181
41.02460135
vioscreen_mfa201
0.882328817
vioscreen_mfa221
0.628493176
vioscreen_mfatot
45.84456871
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.429835322000001
vioscreen_nccglbr
3.359369983
vioscreen_nccglgr
2.350328921
vioscreen_niacin
21.43312286
vioscreen_niacineq
37.92317798
vioscreen_nitrogen
16.96328794
vioscreen_non_fried_fish_servings
6.00962
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.001370197
vioscreen_oxalic
52.02679795
vioscreen_oxalicm
76.94826627
vioscreen_pantothe
7.576492937
vioscreen_pectins
0.358876686
vioscreen_pfa182
9.132247298
vioscreen_pfa183
1.3057536090000001
vioscreen_pfa184
0.13926027900000001
vioscreen_pfa204
0.4729863
vioscreen_pfa205
0.44241094700000005
vioscreen_pfa225
0.175452057
vioscreen_pfa226
0.939999933
vioscreen_pfatot
12.78504254
vioscreen_phenylal
4.492410905
vioscreen_phosphor
1166.06113
vioscreen_phytic
73.46972924
vioscreen_pinitol
0.0
vioscreen_potass
2047.965582
vioscreen_procdate
10/28/15
vioscreen_proline
4.673726455
vioscreen_protanim
103.4677012
vioscreen_protein
105.6145013
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
2.146958944
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
92.0
vioscreen_retinol
475.2513271000001
vioscreen_rgrain
0.06958904
vioscreen_ribofla
2.401616345
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.0
vioscreen_satoco
0.0
vioscreen_selenium
145.3059932
vioscreen_serine
5.090273839
vioscreen_sfa100
0.249726032
vioscreen_sfa120
0.278876736
vioscreen_sfa140
1.967424785
vioscreen_sfa160
19.63852071
vioscreen_sfa170
0.27539727199999997
vioscreen_sfa180
8.757068707
vioscreen_sfa200
0.147369855
vioscreen_sfa220
0.063260274
vioscreen_sfa40
0.260027407
vioscreen_sfa60
0.159835606
vioscreen_sfa80
0.100219183
vioscreen_sfatot
32.15208155
vioscreen_sodium
2706.247945
vioscreen_sorbitol
0.000219178
vioscreen_srvid
20701.0
vioscreen_starch
1.075068476
vioscreen_started
9/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
0.346657531
vioscreen_sweet_servings
0.0
vioscreen_tagatose
0.0
vioscreen_tfa161t
0.099123289
vioscreen_tfa181t
2.710739846
vioscreen_tfa182t
0.314191782
vioscreen_tgrain
0.06958904
vioscreen_thiamin
0.7637534779999999
vioscreen_threonin
4.489424363
vioscreen_time
10.0
vioscreen_totaltfa
3.130602526
vioscreen_totcla
0.19312326100000002
vioscreen_totfolat
160.17455049999998
vioscreen_totsugar
5.381917875
vioscreen_tryptoph
0.98863007
vioscreen_tyrosine
3.629122967
vioscreen_user_id
20701.0
vioscreen_v_drkgr
0.10602739900000001
vioscreen_v_orange
0.0
vioscreen_v_other
0.156109577
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.0
vioscreen_v_tomato
0.016657533999999998
vioscreen_v_total
0.278794505
vioscreen_valine
5.526219031
vioscreen_veg5_day
0.5
vioscreen_vegetable_servings
0.49863
vioscreen_vegsumm
0.6
vioscreen_visit
1.0
vioscreen_vita_iu
2511.521918
vioscreen_vita_rae
521.6085616
vioscreen_vita_re
567.9671232999999
vioscreen_vitb12
10.42487626
vioscreen_vitb6
1.5673971930000001
vioscreen_vitc
9.832383749
vioscreen_vitd
19.52399936
vioscreen_vitd2
0.0
vioscreen_vitd3
19.52399936
vioscreen_vitd_iu
780.9599743
vioscreen_vite_iu
11.051068199999998
vioscreen_vitk
56.83679366
vioscreen_water
2314.313014
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.000575342
vioscreen_zinc
13.28057577
vitamin_b_supplement_frequency
Rarely (a few times/month)
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
71.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Daily
whole_grain_frequency
Never