human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947500
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:41Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000030022
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
47.0
age_corrected
47.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
true
alzheimers
I do not have this condition
anonymized name
000030022
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
Diagnosed by an alternative medicine practitioner
autoimmune
Not provided
birth year
1968.0
bmi
20.96
bmi_cat
Normal
bmi_corrected
20.96
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to be constipated (have difficulty passing stool) - Type 1 and 2
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
Not provided
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
2015-09-28
collection month
September
collection season
Fall
collection time
09:15
collection_timestamp
2015-09-28 09:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
City
drinks_per_session
Not provided
economic_region
Not provided
elevation
38.6
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Rarely (a few times/month)
exercise_location
Depends on the season
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Never
flossing_frequency
Never
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Occasionally (1-2 times/week)
fungal_overgrowth
Self-diagnosed
geo loc name
United Kingdom
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
162.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Daily
host common name
human
host subject id
dd864040824b41844fc6bdec85231ec3b9a56ed17d178b76a8cb1559bfdfefc33a9dde3422ecc8885fbcb3aeda513461b63c84718cf269917ac7c56a8c9b4e5f
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Not provided
kidney_disease
I do not have this condition
lactose
Not provided
last_move
Within the past year
last_travel
I have not been outside of my country of residence in the past year.
latitude
50.8
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.2
lowgrain_diet_type
true
lung disease
Diagnosed by a medical professional (doctor, physician assistant)
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
Diagnosed by a medical professional (doctor, physician assistant)
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Regularly (3-5 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000030022
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
Not provided
skin_condition
Self-diagnosed
sleep_duration
7-8 hours
smoking_frequency
Rarely (a few times/month)
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
8e9b8213ad14511e
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
4.58863007
vioscreen_addsugar
21.1184664
vioscreen_adsugtot
19.68643782
vioscreen_age
215.0
vioscreen_alanine
2.72923283
vioscreen_alcohol
0.000520548
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
9635.663698999999
vioscreen_alphtoce
11.74772581
vioscreen_alphtoco
11.11849248
vioscreen_arginine
3.137150845
vioscreen_ash
20.09199888
vioscreen_aspartam
0.0
vioscreen_aspartic
6.026438089
vioscreen_avcarb
123.3783926
vioscreen_bcodeid
Not provided
vioscreen_betacar
27010.81644
vioscreen_betacryp
405.9402397
vioscreen_betaine
12.75802788
vioscreen_betatoco
0.24052055
vioscreen_biochana
0.04468493
vioscreen_bmi
Not provided
vioscreen_caffeine
48.43504388
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
0.56362
vioscreen_calcium_servings
2.2871200000000003
vioscreen_calories
1081.527483
vioscreen_carbo
161.53530609999999
vioscreen_cholest
243.25141269999997
vioscreen_choline
397.7756421
vioscreen_clac9t11
0.01030137
vioscreen_clat10c12
0.002876712
vioscreen_copper
1.526082245
vioscreen_coumest
0.000191781
vioscreen_cystine
0.815342399
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.063808222
vioscreen_d_tot_soym
0.5636164
vioscreen_d_total
0.5636164
vioscreen_d_yogurt
0.499808199
vioscreen_daidzein
0.04854794900000001
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.6667397279999999
vioscreen_discfat_oil
9.610027156000001
vioscreen_discfat_sol
7.343287805
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001780822
vioscreen_f_citmlb
0.328191783
vioscreen_f_nj_citmlb
0.322876708
vioscreen_f_nj_other
1.461890485
vioscreen_f_nj_total
1.78476713
vioscreen_f_other
1.461890485
vioscreen_f_total
1.790082205
vioscreen_fat
32.08772474
vioscreen_fiber
38.158981700000005
vioscreen_fibh2o
7.38131555
vioscreen_fibinso
30.92783605
vioscreen_finished
8/30/15
vioscreen_fish_servings
1.3040399999999999
vioscreen_fol_deqv
433.39306510000006
vioscreen_fol_nat
431.04567639999993
vioscreen_fol_syn
1.380821918
vioscreen_formontn
0.010986302
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
3.6
vioscreen_fructose
26.90087489
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.012438356000000001
vioscreen_g_total
0.012438356000000001
vioscreen_g_whl
0.0
vioscreen_galactos
0.703671223
vioscreen_gammtoco
5.286958877
vioscreen_gender
false
vioscreen_genistn
0.1
vioscreen_glac
40.08276434
vioscreen_gltc
47.83224529
vioscreen_glucose
23.20060734
vioscreen_glutamic
9.75668544
vioscreen_glycine
2.12104141
vioscreen_glycitn
0.002821918
vioscreen_grams
4123.381507
vioscreen_hei2010_dairy
4.0
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
10.0
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
74.0
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.0
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.0
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
4.0
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
7.4
vioscreen_hei_sat_fat
10.0
vioscreen_hei_score
71.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
20.0
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.0
vioscreen_height
Not provided
vioscreen_histidin
1.324684875
vioscreen_inositol
0.197342483
vioscreen_iron
9.752054126
vioscreen_isoleuc
2.348821938
vioscreen_isomalt
0.0
vioscreen_joules
4525.108561999999
vioscreen_juice_servings
0.01063
vioscreen_lactitol
0.0
vioscreen_lactose
8.140739378
vioscreen_legumes
0.024465754
vioscreen_leucine
3.885397381
vioscreen_line_gi
352.8817851
vioscreen_low_fat_dairy_serving
0.49981000000000003
vioscreen_lutzeax
7123.213699
vioscreen_lycopene
9980.837671
vioscreen_lysine
3.63627428
vioscreen_m_egg
1.000739696
vioscreen_m_fish_hi
0.644794537
vioscreen_m_fish_lo
0.09830137300000001
vioscreen_m_frank
0.549068503
vioscreen_m_meat
0.288849316
vioscreen_m_mpf
2.1794794790000003
vioscreen_m_nutsd
1.124493157
vioscreen_m_organ
0.067671235
vioscreen_m_poult
0.530794536
vioscreen_m_soy
0.000027399999999999995
vioscreen_magnes
312.1844392
vioscreen_maltitol
0.0
vioscreen_maltose
1.021917808
vioscreen_mangan
3.519918531
vioscreen_mannitol
1.427068339
vioscreen_methhis3
7.370383401000001
vioscreen_methion
1.130958954
vioscreen_mfa141
0.012986301
vioscreen_mfa161
0.598602755
vioscreen_mfa181
12.54854853
vioscreen_mfa201
0.217616439
vioscreen_mfa221
0.1239452
vioscreen_mfatot
13.59345168
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
11.11849248
vioscreen_nccglbr
78.59430116
vioscreen_nccglgr
54.96665775
vioscreen_niacin
16.39312259
vioscreen_niacineq
25.11298694
vioscreen_nitrogen
8.462383615
vioscreen_non_fried_fish_servings
1.3040399999999999
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
0.989013755
vioscreen_oxalic
242.06729449999997
vioscreen_oxalicm
256.3267551
vioscreen_pantothe
4.743945312
vioscreen_pectins
8.048657561
vioscreen_pfa182
5.86153414
vioscreen_pfa183
0.640301346
vioscreen_pfa184
0.027095891
vioscreen_pfa204
0.127452056
vioscreen_pfa205
0.087315071
vioscreen_pfa225
0.037561644
vioscreen_pfa226
0.197068473
vioscreen_pfatot
7.034712784
vioscreen_phenylal
2.308931534
vioscreen_phosphor
942.1054795
vioscreen_phytic
546.7128852999999
vioscreen_pinitol
0.0000822
vioscreen_potass
3966.971575
vioscreen_procdate
10/28/15
vioscreen_proline
2.62076717
vioscreen_protanim
28.15052173
vioscreen_protein
52.36339362
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
24.20394638
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
157.0
vioscreen_retinol
243.58088610000001
vioscreen_rgrain
0.066657534
vioscreen_ribofla
1.5359174340000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
9.37619
vioscreen_satoco
0.0
vioscreen_selenium
53.685948200000006
vioscreen_serine
2.600465874
vioscreen_sfa100
0.04109589
vioscreen_sfa120
0.071917808
vioscreen_sfa140
0.30517806
vioscreen_sfa160
5.068109549
vioscreen_sfa170
0.022301371
vioscreen_sfa180
1.85350693
vioscreen_sfa200
0.094273972
vioscreen_sfa220
0.175534246
vioscreen_sfa40
0.048876712999999995
vioscreen_sfa60
0.019534247
vioscreen_sfa80
0.019342467
vioscreen_sfatot
7.860137521
vioscreen_sodium
2776.157534
vioscreen_sorbitol
1.6724109390000002
vioscreen_srvid
20541.0
vioscreen_starch
19.51038501
vioscreen_started
8/30/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
32.12041149
vioscreen_sweet_servings
0.16699999999999998
vioscreen_tagatose
4.292164424
vioscreen_tfa161t
0.006082191999999999
vioscreen_tfa181t
0.39293154399999997
vioscreen_tfa182t
0.09265753300000001
vioscreen_tgrain
0.066657534
vioscreen_thiamin
1.0438902140000001
vioscreen_threonin
2.488958991
vioscreen_time
39.0
vioscreen_totaltfa
0.49383561600000003
vioscreen_totcla
0.013561643
vioscreen_totfolat
432.4264983
vioscreen_totsugar
92.83344392
vioscreen_tryptoph
0.522027379
vioscreen_tyrosine
1.72739726
vioscreen_user_id
20541.0
vioscreen_v_drkgr
0.35460272
vioscreen_v_orange
1.995068527
vioscreen_v_other
3.36164417
vioscreen_v_potato
0.18673973600000002
vioscreen_v_starcy
0.497589028
vioscreen_v_tomato
2.117205392
vioscreen_v_total
8.512848486000001
vioscreen_valine
2.759671313
vioscreen_veg5_day
17.0
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
17.0
vioscreen_visit
1.0
vioscreen_vita_iu
54198.16986
vioscreen_vita_rae
2912.882877
vioscreen_vita_re
5582.186986
vioscreen_vitb12
3.152931694
vioscreen_vitb6
1.999013739
vioscreen_vitc
240.46117290000004
vioscreen_vitd
4.124136812
vioscreen_vitd2
0.0
vioscreen_vitd3
4.124136812
vioscreen_vitd_iu
164.9654725
vioscreen_vite_iu
16.59276541
vioscreen_vitk
286.1988228
vioscreen_water
3866.3321920000003
vioscreen_weight
Not provided
vioscreen_wgrain
0.0
vioscreen_whole_grain_servings
0.0
vioscreen_xylitol
0.05172603
vioscreen_zinc
7.444848967
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Rarely (a few times/month)
vivid_dreams
Not provided
weight kg
55.0
weight_change
Not provided
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Rarely (less than once/week)