human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947494
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:40Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029374
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
42.0
age_corrected
42.0
alcohol consumption
true
alcohol_frequency
Occasionally (1-2 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
true
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000029374
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1973.0
bmi
21.01
bmi_cat
Normal
bmi_corrected
21.01
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
Diagnosed by a medical professional (doctor, physician assistant)
collection date
03/01/2016
collection month
March
collection season
Spring
collection time
09:45
collection_timestamp
2016-03-01 09:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Regularly (3-5 times/week)
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
40.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Indoors
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
Year
frozen_dessert_frequency
Never
fruit_frequency
Rarely (less than once/week)
fungal_overgrowth
I do not have this condition
geo loc name
United Kingdom
gluten
No
has_physical_specimen
true
height cm
169.0
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
f78b98e8afaff632a5f40fe3c4ce84fc599c4de1bbef9890212dc86c6c30aa090ea9d746cd336e433f51e669aa878e1a157ebc1cef78981df0f8542478653c59
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
50.2
level_of_education
Bachelor's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-5.1
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
false
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Never
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029374
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
false
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
0d16ed90543b6dff
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.133479455
vioscreen_a_cal
125.6763592
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
6.210602392
vioscreen_addsugar
28.49640946
vioscreen_adsugtot
26.33594553
vioscreen_age
215.0
vioscreen_alanine
2.580986127
vioscreen_alcohol
16.72082352
vioscreen_alcohol_servings
1.1334799999999998
vioscreen_alphacar
828.3887842
vioscreen_alphtoce
7.783534888999999
vioscreen_alphtoco
7.043152022999999
vioscreen_arginine
3.004109923
vioscreen_ash
16.8227111
vioscreen_aspartam
0.0
vioscreen_aspartic
5.225151501
vioscreen_avcarb
101.6049015
vioscreen_bcodeid
Not provided
vioscreen_betacar
7057.306164
vioscreen_betacryp
176.3539705
vioscreen_betaine
53.8414009
vioscreen_betatoco
0.250410963
vioscreen_biochana
0.0031232879999999997
vioscreen_bmi
Not provided
vioscreen_caffeine
357.3914598
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
2.0126
vioscreen_calcium_servings
2.99885
vioscreen_calories
1416.351027
vioscreen_carbo
117.66287460000001
vioscreen_cholest
200.61181509999997
vioscreen_choline
263.6562072
vioscreen_clac9t11
0.139013682
vioscreen_clat10c12
0.028986303999999997
vioscreen_copper
0.9670686070000001
vioscreen_coumest
0.209917816
vioscreen_cystine
0.6326575289999999
vioscreen_d_cheese
0.5660273720000001
vioscreen_d_milk
1.069753401
vioscreen_d_tot_soym
2.012602673
vioscreen_d_total
2.012602673
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
2.702986877
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.5244657330000002
vioscreen_discfat_oil
16.9492843
vioscreen_discfat_sol
37.93397635
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.075945209
vioscreen_f_nj_citmlb
0.072575347
vioscreen_f_nj_other
0.467479465
vioscreen_f_nj_total
0.540054865
vioscreen_f_other
0.467479465
vioscreen_f_total
0.5434520979999999
vioscreen_fat
71.76985766
vioscreen_fiber
16.05202536
vioscreen_fibh2o
6.119725894
vioscreen_fibinso
9.976165186
vioscreen_finished
6/24/15
vioscreen_fish_servings
0.63058
vioscreen_fol_deqv
234.62771830000003
vioscreen_fol_nat
215.4277397
vioscreen_fol_syn
11.27189105
vioscreen_formontn
0.000684932
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
0.5
vioscreen_frtsumm
1.1
vioscreen_fructose
6.723123127000001
vioscreen_fruit_servings
0.49863
vioscreen_g_nwhl
0.614493132
vioscreen_g_total
1.214904116
vioscreen_g_whl
0.60038356
vioscreen_galactos
0.549123309
vioscreen_gammtoco
6.256684102
vioscreen_gender
false
vioscreen_genistn
3.1136444510000003
vioscreen_glac
40.73594553
vioscreen_gltc
44.93742509
vioscreen_glucose
7.56484977
vioscreen_glutamic
10.75268421
vioscreen_glycine
2.1927941730000002
vioscreen_glycitn
0.48838354700000003
vioscreen_grams
2821.335274
vioscreen_hei2010_dairy
10.0
vioscreen_hei2010_empty_calories
12.0
vioscreen_hei2010_fatty_acids
1.2
vioscreen_hei2010_fruit
2.4
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
67.3
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
4.1
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
4.8
vioscreen_hei2010_whole_grains
2.8
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
2.4
vioscreen_hei_grains
1.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
10.0
vioscreen_hei_non_juice_frt
4.8
vioscreen_hei_oils
10.0
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
59.7
vioscreen_hei_sodium
3.3
vioscreen_hei_sol_fat_alc_add_sug
6.4
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
1.4
vioscreen_height
Not provided
vioscreen_histidin
1.624438644
vioscreen_inositol
0.072356169
vioscreen_iron
6.9355910210000005
vioscreen_isoleuc
2.644684925
vioscreen_isomalt
0.0
vioscreen_joules
5926.014384
vioscreen_juice_servings
0.0068200000000000005
vioscreen_lactitol
0.0
vioscreen_lactose
19.39463024
vioscreen_legumes
0.005232877
vioscreen_leucine
4.571917808
vioscreen_line_gi
211.7055223
vioscreen_low_fat_dairy_serving
0.38419000000000003
vioscreen_lutzeax
4520.342122999999
vioscreen_lycopene
1925.485616
vioscreen_lysine
4.09186276
vioscreen_m_egg
0.294356171
vioscreen_m_fish_hi
0.336547935
vioscreen_m_fish_lo
0.02279452
vioscreen_m_frank
0.57767125
vioscreen_m_meat
1.136301453
vioscreen_m_mpf
2.656575577
vioscreen_m_nutsd
0.9146027870000001
vioscreen_m_organ
0.0
vioscreen_m_poult
0.5832602720000001
vioscreen_m_soy
0.531972598
vioscreen_magnes
275.032363
vioscreen_maltitol
0.0
vioscreen_maltose
1.438684918
vioscreen_mangan
2.6926575539999997
vioscreen_mannitol
0.101424648
vioscreen_methhis3
9.1880545
vioscreen_methion
1.301589004
vioscreen_mfa141
0.097917802
vioscreen_mfa161
1.16336996
vioscreen_mfa181
24.79586366
vioscreen_mfa201
0.286438302
vioscreen_mfa221
0.070465752
vioscreen_mfatot
26.59857663
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
7.043152022999999
vioscreen_nccglbr
74.87346961
vioscreen_nccglgr
52.37279538
vioscreen_niacin
14.46096024
vioscreen_niacineq
24.87983733
vioscreen_nitrogen
9.150466208
vioscreen_non_fried_fish_servings
0.63058
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.37400011
vioscreen_oxalic
180.0667594
vioscreen_oxalicm
182.3974101
vioscreen_pantothe
5.43906852
vioscreen_pectins
2.643588968
vioscreen_pfa182
9.589726027000001
vioscreen_pfa183
1.183123361
vioscreen_pfa184
0.015369863000000001
vioscreen_pfa204
0.08646575199999999
vioscreen_pfa205
0.047972602999999996
vioscreen_pfa225
0.023945205
vioscreen_pfa226
0.103671223
vioscreen_pfatot
11.12789089
vioscreen_phenylal
2.5888762169999997
vioscreen_phosphor
1043.857534
vioscreen_phytic
432.2637414
vioscreen_pinitol
0.023315069
vioscreen_potass
2651.33339
vioscreen_procdate
10/28/15
vioscreen_proline
3.89443861
vioscreen_protanim
39.86917808
vioscreen_protein
56.59646832
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.72112318
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
369.0
vioscreen_retinol
302.721875
vioscreen_rgrain
0.657616435
vioscreen_ribofla
1.880547845
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
0.7566
vioscreen_satoco
0.0
vioscreen_selenium
69.80679581
vioscreen_serine
2.7896164989999996
vioscreen_sfa100
0.7278629670000001
vioscreen_sfa120
1.111068433
vioscreen_sfa140
2.981013551
vioscreen_sfa160
14.16043852
vioscreen_sfa170
0.10610959800000001
vioscreen_sfa180
6.276218696
vioscreen_sfa200
0.144958914
vioscreen_sfa220
0.166657518
vioscreen_sfa40
0.77863017
vioscreen_sfa60
0.510027407
vioscreen_sfa80
0.45583563
vioscreen_sfatot
27.74583155
vioscreen_sodium
2306.099315
vioscreen_sorbitol
0.035452054
vioscreen_srvid
19963.0
vioscreen_starch
26.35455105
vioscreen_started
6/24/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
28.06317958
vioscreen_sweet_servings
0.43836
vioscreen_tagatose
4.209808433
vioscreen_tfa161t
0.050602738
vioscreen_tfa181t
1.187808437
vioscreen_tfa182t
0.36161645299999995
vioscreen_tgrain
1.310739763
vioscreen_thiamin
1.0295615
vioscreen_threonin
2.23104131
vioscreen_time
15.0
vioscreen_totaltfa
1.677150779
vioscreen_totcla
0.167671225
vioscreen_totfolat
226.6995719
vioscreen_totsugar
63.54380886
vioscreen_tryptoph
0.626027314
vioscreen_tyrosine
2.164109656
vioscreen_user_id
19963.0
vioscreen_v_drkgr
0.40495889700000004
vioscreen_v_orange
0.280958912
vioscreen_v_other
0.850630167
vioscreen_v_potato
0.15098630300000002
vioscreen_v_starcy
0.128301375
vioscreen_v_tomato
0.165260273
vioscreen_v_total
1.981068567
vioscreen_valine
3.1268491139999997
vioscreen_veg5_day
4.3
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
4.0
vioscreen_visit
1.0
vioscreen_vita_iu
13608.846580000001
vioscreen_vita_rae
932.696661
vioscreen_vita_re
1562.668151
vioscreen_vitb12
3.619040628
vioscreen_vitb6
1.39769864
vioscreen_vitc
114.3810681
vioscreen_vitd
6.351177895
vioscreen_vitd2
0.000438356
vioscreen_vitd3
6.350711687
vioscreen_vitd_iu
254.04711580000003
vioscreen_vite_iu
10.46726175
vioscreen_vitk
212.59648969999998
vioscreen_water
2554.276027
vioscreen_weight
Not provided
vioscreen_wgrain
0.653095862
vioscreen_whole_grain_servings
0.60038
vioscreen_xylitol
0.022958902000000003
vioscreen_zinc
7.704794521
vitamin_b_supplement_frequency
Never
vitamin_d_supplement_frequency
Never
vivid_dreams
Not provided
weight kg
60.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)