human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947479
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:40Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000027810
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
false
alcohol_frequency
Never
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
true
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000027810
antibiotic_history
Year
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
20.12
bmi_cat
Normal
bmi_corrected
20.12
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Three
bowel_movement_quality
I tend to have diarrhea (watery stool) - Type 5, 6 and 7
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Northeast
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-05-20
collection month
May
collection season
Spring
collection time
10:20
collection_timestamp
2015-05-20 10:20
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Mideast
elevation
153.0
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Daily
flossing_frequency
Daily
flu_vaccine_date
Year
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I do not eat gluten because it makes me feel bad
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Regularly (3-5 times/week)
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
1a9cea6a5a1a6806020b2eba6ebbc7f59207a37b36daa03f18631734f1f98cab3e5c3f671e6587d80db55fad21d65b29b7fb3e508ff8607fea60ce363be0b421
host taxid
9606
ibd
Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
true
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
43.1
level_of_education
Associate's degree
liver_disease
I do not have this condition
livingwith
No
longitude
-77.4
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Regularly (3-5 times/week)
milk_substitute_frequency
Regularly (3-5 times/week)
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
true
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Rarely (less than once/week)
probiotic_frequency
Regularly (3-5 times/week)
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Occasionally (1-2 times/week)
roommates
One
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000027810
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
7-8 hours
smoking_frequency
Never
softener
true
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
NY
subset_age
true
subset_antibiotic_history
false
subset_bmi
true
subset_diabetes
true
subset_healthy
false
subset_ibd
false
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
6d2d20bd3053655e
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Regularly (3-5 times/week)
vioscreen_a_bev
0.000136986
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.73586259
vioscreen_addsugar
92.41334546
vioscreen_adsugtot
80.98029752
vioscreen_age
215.0
vioscreen_alanine
4.1462469230000005
vioscreen_alcohol
0.02109589
vioscreen_alcohol_servings
0.00014
vioscreen_alphacar
2417.229623
vioscreen_alphtoce
16.77810895
vioscreen_alphtoco
14.93073764
vioscreen_arginine
4.763835081
vioscreen_ash
31.60145548
vioscreen_aspartam
0.0
vioscreen_aspartic
8.473508401
vioscreen_avcarb
347.2063142
vioscreen_bcodeid
Not provided
vioscreen_betacar
11352.82055
vioscreen_betacryp
528.5815497
vioscreen_betaine
371.4023116
vioscreen_betatoco
0.734712282
vioscreen_biochana
0.020657535
vioscreen_bmi
Not provided
vioscreen_caffeine
329.74574060000003
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
2.34611
vioscreen_calcium_servings
4.85299
vioscreen_calories
2845.414041
vioscreen_carbo
388.56485449999997
vioscreen_cholest
307.777226
vioscreen_choline
415.0061644
vioscreen_clac9t11
0.16054792
vioscreen_clat10c12
0.029452055
vioscreen_copper
2.24139722
vioscreen_coumest
0.18024657800000002
vioscreen_cystine
1.248712576
vioscreen_d_cheese
1.543643816
vioscreen_d_milk
0.42860274600000003
vioscreen_d_tot_soym
2.346109469
vioscreen_d_total
2.346109469
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.335643841
vioscreen_database
NDSR - V44
vioscreen_delttoco
3.4746572000000002
vioscreen_discfat_oil
33.9726295
vioscreen_discfat_sol
61.62411708
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.001123288
vioscreen_f_citmlb
1.151287591
vioscreen_f_nj_citmlb
0.8256712190000001
vioscreen_f_nj_other
1.306876739
vioscreen_f_nj_total
2.132602807
vioscreen_f_other
1.897753405
vioscreen_f_total
3.049096011
vioscreen_fat
110.5064533
vioscreen_fiber
41.35008829
vioscreen_fibh2o
12.14413795
vioscreen_fibinso
29.16659889
vioscreen_finished
5/18/15
vioscreen_fish_servings
1.57615
vioscreen_fol_deqv
567.0373288
vioscreen_fol_nat
433.80997429999996
vioscreen_fol_syn
78.27619328
vioscreen_formontn
0.003890411
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
4.2
vioscreen_frtsumm
6.1
vioscreen_fructose
56.93394157
vioscreen_fruit_servings
3.0
vioscreen_g_nwhl
3.821369662
vioscreen_g_total
9.024274936
vioscreen_g_whl
5.2028768460000006
vioscreen_galactos
0.9323013929999999
vioscreen_gammtoco
15.21125722
vioscreen_gender
false
vioscreen_genistn
0.312465783
vioscreen_glac
169.2220034
vioscreen_gltc
185.6292166
vioscreen_glucose
57.54367509
vioscreen_glutamic
21.15673561
vioscreen_glycine
3.6124655530000003
vioscreen_glycitn
0.048958905999999996
vioscreen_grams
5173.414726
vioscreen_hei2010_dairy
6.3
vioscreen_hei2010_empty_calories
13.3
vioscreen_hei2010_fatty_acids
2.6
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
4.2
vioscreen_hei2010_protien_foods
3.5
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
71.5
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
1.6
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
10.0
vioscreen_hei_drk_g_org_veg_leg
4.5
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
5.0
vioscreen_hei_meat_beans
7.1
vioscreen_hei_milk
6.3
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
9.9
vioscreen_hei_sat_fat
3.9
vioscreen_hei_score
71.8
vioscreen_hei_sodium
1.3
vioscreen_hei_sol_fat_alc_add_sug
13.8
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
5.0
vioscreen_height
Not provided
vioscreen_histidin
2.5335340530000003
vioscreen_inositol
0.320027391
vioscreen_iron
17.13704516
vioscreen_isoleuc
4.240466476
vioscreen_isomalt
0.0
vioscreen_joules
11905.20274
vioscreen_juice_servings
1.83296
vioscreen_lactitol
0.0
vioscreen_lactose
13.8076707
vioscreen_legumes
0.183397267
vioscreen_leucine
7.263536093
vioscreen_line_gi
818.2364726
vioscreen_low_fat_dairy_serving
0.4363
vioscreen_lutzeax
4203.742466
vioscreen_lycopene
22214.41644
vioscreen_lysine
5.9238354829999995
vioscreen_m_egg
0.533808209
vioscreen_m_fish_hi
0.212630139
vioscreen_m_fish_lo
0.68561648
vioscreen_m_frank
0.185835621
vioscreen_m_meat
0.8971780859999999
vioscreen_m_mpf
3.076164183
vioscreen_m_nutsd
0.682054828
vioscreen_m_organ
0.0
vioscreen_m_poult
1.094986338
vioscreen_m_soy
0.003890411
vioscreen_magnes
490.68454620000006
vioscreen_maltitol
0.0
vioscreen_maltose
5.217287497
vioscreen_mangan
9.666025657999999
vioscreen_mannitol
0.953890281
vioscreen_methhis3
11.53282053
vioscreen_methion
2.0467400540000003
vioscreen_mfa141
0.150328775
vioscreen_mfa161
1.5071233880000001
vioscreen_mfa181
35.92122753
vioscreen_mfa201
0.428410987
vioscreen_mfa221
0.009260274
vioscreen_mfatot
38.40082406
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
14.93073764
vioscreen_nccglbr
271.15258989999995
vioscreen_nccglgr
189.659482
vioscreen_niacin
25.11933861
vioscreen_niacineq
43.45257117
vioscreen_nitrogen
16.1436684
vioscreen_non_fried_fish_servings
1.57615
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.854904551
vioscreen_oxalic
400.98634419999996
vioscreen_oxalicm
366.24332189999996
vioscreen_pantothe
8.149285638
vioscreen_pectins
5.95285076
vioscreen_pfa182
19.49438276
vioscreen_pfa183
2.728383354
vioscreen_pfa184
0.005068493
vioscreen_pfa204
0.121315065
vioscreen_pfa205
0.029972604
vioscreen_pfa225
0.021726027999999998
vioscreen_pfa226
0.071452049
vioscreen_pfatot
22.57523277
vioscreen_phenylal
4.314629709
vioscreen_phosphor
1855.323459
vioscreen_phytic
1253.6208900000001
vioscreen_pinitol
0.018082193
vioscreen_potass
5020.749658
vioscreen_procdate
10/28/15
vioscreen_proline
7.02158872
vioscreen_protanim
55.03235231
vioscreen_protein
99.12873502
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
44.09106646
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
439.0
vioscreen_retinol
456.9735445
vioscreen_rgrain
3.89575396
vioscreen_ribofla
2.55882167
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
4.82112
vioscreen_satoco
0.0
vioscreen_selenium
177.0627676
vioscreen_serine
4.540766468
vioscreen_sfa100
1.023643682
vioscreen_sfa120
1.3316163779999999
vioscreen_sfa140
4.329891173
vioscreen_sfa160
20.55493097
vioscreen_sfa170
0.21005479
vioscreen_sfa180
8.698876283999999
vioscreen_sfa200
0.248109582
vioscreen_sfa220
0.21339725899999998
vioscreen_sfa40
1.26060281
vioscreen_sfa60
0.6895341429999999
vioscreen_sfa80
0.479178065
vioscreen_sfatot
39.72478863
vioscreen_sodium
5289.440411
vioscreen_sorbitol
0.7901370529999999
vioscreen_srvid
18720.0
vioscreen_starch
130.9658604
vioscreen_started
5/18/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
51.41167059
vioscreen_sweet_servings
1.7274
vioscreen_tagatose
4.432109843
vioscreen_tfa161t
0.093643826
vioscreen_tfa181t
2.040137053
vioscreen_tfa182t
0.602493119
vioscreen_tgrain
9.112465887
vioscreen_thiamin
1.9802192580000002
vioscreen_threonin
3.5905751689999996
vioscreen_time
45.0
vioscreen_totaltfa
2.896301771
vioscreen_totcla
0.190821922
vioscreen_totfolat
512.0862586000001
vioscreen_totsugar
187.1114726
vioscreen_tryptoph
1.100986094
vioscreen_tyrosine
3.313205332
vioscreen_user_id
18720.0
vioscreen_v_drkgr
0.48336984299999997
vioscreen_v_orange
0.551123256
vioscreen_v_other
1.984821978
vioscreen_v_potato
0.414520515
vioscreen_v_starcy
0.11287670400000001
vioscreen_v_tomato
1.612520568
vioscreen_v_total
5.159752916
vioscreen_valine
4.942356057
vioscreen_veg5_day
6.8
vioscreen_vegetable_servings
0.78356
vioscreen_vegsumm
10.3
vioscreen_visit
1.0
vioscreen_vita_iu
22901.53836
vioscreen_vita_rae
1525.7857880000001
vioscreen_vita_re
2594.596062
vioscreen_vitb12
4.142602874
vioscreen_vitb6
2.635478817
vioscreen_vitc
270.65856160000004
vioscreen_vitd
5.791041042000001
vioscreen_vitd2
0.002356164
vioscreen_vitd3
5.788767525
vioscreen_vitd_iu
231.64164169999998
vioscreen_vite_iu
22.24180758
vioscreen_vitk
248.28630139999999
vioscreen_water
4578.790068
vioscreen_weight
Not provided
vioscreen_wgrain
5.216684838
vioscreen_whole_grain_servings
5.20288
vioscreen_xylitol
0.055643834
vioscreen_zinc
14.44556132
vitamin_b_supplement_frequency
Regularly (3-5 times/week)
vitamin_d_supplement_frequency
Regularly (3-5 times/week)
vivid_dreams
Not provided
weight kg
49.0
weight_change
Decreased more than 10 pounds
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Never