human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947575
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:26Z
INSDC last update
2017-08-06T13:25:45Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000036147
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
40s
age years
41.0
age_corrected
41.0
alcohol consumption
true
alcohol_frequency
Regularly (3-5 times/week)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000036147
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1974.0
bmi
26.67
bmi_cat
Overweight
bmi_corrected
26.67
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Two
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
Midwest
chickenpox
No
clinical condition
I do not have this condition
collection date
10/11/2015
collection month
October
collection season
Fall
collection time
21:45
collection_timestamp
2015-10-11 21:45
consume_animal_products_abx
Not sure
contraceptive
No
cosmetics_frequency
Daily
country
USA
country of birth
Brazil
country_residence
Not provided
csection
false
deodorant_use
I use an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Great Lakes
elevation
218.2
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Regularly (3-5 times/week)
exercise_location
Both
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Daily
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
No
has_physical_specimen
true
height cm
189.0
height_units
centimeters
high_fat_red_meat_frequency
Never
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
ac040554aa14fe4bd005e90fa3fac9ebb6c966c9a3a82b2a123e4fcfe1b003327ed6288e258d299d7a367eae66ac7ecee06c65f8c2338aa53ecd7ba625faf25c
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
39.8
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-86.2
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Daily
multivitamin
true
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
false
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
true
olive_oil
Occasionally (1-2 times/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Regularly (3-5 times/week)
pregnant
Not provided
prepared_meals_frequency
Daily
probiotic_frequency
Daily
public
true
race
Hispanic
ready_to_eat_meals_frequency
Never
red_meat_frequency
Regularly (3-5 times/week)
roommates_in_study
No
salted_snacks_frequency
Never
sample name
qiita_sid_10317:10317.000036147
sample type
Stool
seafood_frequency
Occasionally (1-2 times/week)
seasonal_allergies
false
sex
male
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
IN
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Occasionally (1-2 times/week)
survey_id
51fdcea8cb51ecf4
teethbrushing_frequency
Daily
thyroid
I do not have this condition
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
1.5591233340000001
vioscreen_a_cal
192.6733947
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
16.02356191
vioscreen_addsugar
85.0145762
vioscreen_adsugtot
73.66802226
vioscreen_age
215.0
vioscreen_alanine
24.93120452
vioscreen_alcohol
24.05558915
vioscreen_alcohol_servings
1.55912
vioscreen_alphacar
1043.835873
vioscreen_alphtoce
85.11911922
vioscreen_alphtoco
46.5169253
vioscreen_arginine
29.08350813
vioscreen_ash
46.42340004
vioscreen_aspartam
15.97526086
vioscreen_aspartic
44.04312393
vioscreen_avcarb
249.18249139999998
vioscreen_bcodeid
Not provided
vioscreen_betacar
12268.854790000001
vioscreen_betacryp
640.2757277000001
vioscreen_betaine
215.6106164
vioscreen_betatoco
0.18526028100000003
vioscreen_biochana
0.006465754000000001
vioscreen_bmi
Not provided
vioscreen_caffeine
154.9850064
vioscreen_calcium
Not provided
vioscreen_calcium_avg
Not provided
vioscreen_calcium_dose
Not provided
vioscreen_calcium_freq
Not provided
vioscreen_calcium_from_dairy_servings
3.00712
vioscreen_calcium_servings
7.9858899999999995
vioscreen_calories
4172.934589
vioscreen_carbo
282.96333480000004
vioscreen_cholest
1596.648801
vioscreen_choline
1861.270034
vioscreen_clac9t11
0.197260295
vioscreen_clat10c12
0.058082199
vioscreen_copper
3.567670765
vioscreen_coumest
0.10772602699999999
vioscreen_cystine
5.836576279
vioscreen_d_cheese
0.288410971
vioscreen_d_milk
1.219315119
vioscreen_d_tot_soym
3.007123221
vioscreen_d_total
3.007123221
vioscreen_d_yogurt
1.4993973409999999
vioscreen_daidzein
21.36323042
vioscreen_database
NDSR - V44
vioscreen_delttoco
1.722246729
vioscreen_discfat_oil
9.38394558
vioscreen_discfat_sol
41.88301316
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0
vioscreen_f_citmlb
0.393780852
vioscreen_f_nj_citmlb
0.388547965
vioscreen_f_nj_other
0.351287675
vioscreen_f_nj_total
0.73983564
vioscreen_f_other
0.351287675
vioscreen_f_total
0.745068443
vioscreen_fat
120.08199909999999
vioscreen_fiber
32.70389287
vioscreen_fibh2o
9.948274293999999
vioscreen_fibinso
22.82164223
vioscreen_finished
10/11/15
vioscreen_fish_servings
5.94904
vioscreen_fol_deqv
985.8223458999998
vioscreen_fol_nat
661.1417807999999
vioscreen_fol_syn
190.9956336
vioscreen_formontn
0.001150685
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
1.0
vioscreen_frtsumm
1.5
vioscreen_fructose
26.25230362
vioscreen_fruit_servings
1.0
vioscreen_g_nwhl
2.094849469
vioscreen_g_total
2.9847395389999996
vioscreen_g_whl
0.8898904040000001
vioscreen_galactos
1.950164377
vioscreen_gammtoco
7.729891508
vioscreen_gender
false
vioscreen_genistn
37.1
vioscreen_glac
128.3901541
vioscreen_gltc
139.62747219999997
vioscreen_glucose
31.14898866
vioscreen_glutamic
74.84118151
vioscreen_glycine
22.25358786
vioscreen_glycitn
6.199699005
vioscreen_grams
3586.1989729999996
vioscreen_hei2010_dairy
5.5
vioscreen_hei2010_empty_calories
20.0
vioscreen_hei2010_fatty_acids
3.6
vioscreen_hei2010_fruit
1.1
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
66.7
vioscreen_hei2010_sea_foods_plant_protiens
5.0
vioscreen_hei2010_sodium
2.9
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
2.2
vioscreen_hei2010_whole_grains
1.4
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
1.1
vioscreen_hei_grains
1.2
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
5.5
vioscreen_hei_non_juice_frt
2.2
vioscreen_hei_oils
1.9
vioscreen_hei_sat_fat
9.1
vioscreen_hei_score
63.9
vioscreen_hei_sodium
2.3
vioscreen_hei_sol_fat_alc_add_sug
19.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.7
vioscreen_height
Not provided
vioscreen_histidin
13.65060065
vioscreen_inositol
0.17358905300000002
vioscreen_iron
53.1929848
vioscreen_isoleuc
22.05649481
vioscreen_isomalt
0.0
vioscreen_joules
17459.54521
vioscreen_juice_servings
0.010490000000000001
vioscreen_lactitol
0.0
vioscreen_lactose
33.66178029
vioscreen_legumes
0.22912328
vioscreen_leucine
36.10800514
vioscreen_line_gi
504.72144689999993
vioscreen_low_fat_dairy_serving
2.3051
vioscreen_lutzeax
14846.317809999999
vioscreen_lycopene
1774.0582190000002
vioscreen_lysine
36.84490315
vioscreen_m_egg
3.1446302439999996
vioscreen_m_fish_hi
1.136520595
vioscreen_m_fish_lo
2.253534186
vioscreen_m_frank
3.098986315
vioscreen_m_meat
17.98695821
vioscreen_m_mpf
39.37928617
vioscreen_m_nutsd
0.465095875
vioscreen_m_organ
0.0
vioscreen_m_poult
14.90326011
vioscreen_m_soy
0.156191776
vioscreen_magnes
934.9113014000001
vioscreen_maltitol
0.0
vioscreen_maltose
2.956739953
vioscreen_mangan
6.62975305
vioscreen_mannitol
0.11536985400000001
vioscreen_methhis3
166.7590325
vioscreen_methion
11.36424711
vioscreen_mfa141
0.275753429
vioscreen_mfa161
3.52580834
vioscreen_mfa181
40.80227686
vioscreen_mfa201
0.548109582
vioscreen_mfa221
0.21890411399999998
vioscreen_mfatot
45.68118044
vioscreen_multi_calcium_avg
200.0
vioscreen_multi_calcium_dose
200.0
vioscreen_multivitamin
true
vioscreen_multivitamin_freq
7.0
vioscreen_natoco
15.62833102
vioscreen_nccglbr
194.9396404
vioscreen_nccglgr
136.3501605
vioscreen_niacin
96.12303082
vioscreen_niacineq
175.4744221
vioscreen_nitrogen
74.04424765
vioscreen_non_fried_fish_servings
5.94904
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
2.713013699
vioscreen_oxalic
691.9316352999999
vioscreen_oxalicm
749.5718322
vioscreen_pantothe
22.20865663
vioscreen_pectins
4.881671393
vioscreen_pfa182
15.41331737
vioscreen_pfa183
1.5773148209999999
vioscreen_pfa184
0.044520548
vioscreen_pfa204
1.12736992
vioscreen_pfa205
0.26109589899999996
vioscreen_pfa225
0.23449314100000002
vioscreen_pfa226
0.605616405
vioscreen_pfatot
19.54191594
vioscreen_phenylal
19.80035718
vioscreen_phosphor
4871.861644
vioscreen_phytic
1699.581507
vioscreen_pinitol
0.013643836000000001
vioscreen_potass
8305.527397
vioscreen_procdate
10/28/15
vioscreen_proline
22.60180865
vioscreen_protanim
374.2934932
vioscreen_protein
457.2777397
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
82.9583476
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
8.0
vioscreen_retinol
1474.696747
vioscreen_rgrain
3.2066028330000003
vioscreen_ribofla
6.524163902000001
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
5.64581
vioscreen_satoco
68.63531678
vioscreen_selenium
476.4488013999999
vioscreen_serine
20.15169895
vioscreen_sfa100
0.289534227
vioscreen_sfa120
0.373397284
vioscreen_sfa140
2.211753364
vioscreen_sfa160
24.02474048
vioscreen_sfa170
0.075561654
vioscreen_sfa180
10.85638378
vioscreen_sfa200
0.100027393
vioscreen_sfa220
0.11641095300000001
vioscreen_sfa40
0.259616444
vioscreen_sfa60
0.12315067699999999
vioscreen_sfa80
0.094794516
vioscreen_sfatot
39.05866064
vioscreen_sodium
7252.631506999999
vioscreen_sorbitol
0.191890413
vioscreen_srvid
20980.0
vioscreen_starch
81.81419628
vioscreen_started
10/11/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.079643835
vioscreen_sucrlose
0.0
vioscreen_sucrose
44.72158872
vioscreen_sweet_servings
0.16604000000000002
vioscreen_tagatose
11.41758883
vioscreen_tfa161t
0.11526027300000001
vioscreen_tfa181t
2.44569861
vioscreen_tfa182t
0.319945202
vioscreen_tgrain
5.301424711
vioscreen_thiamin
4.321972322
vioscreen_threonin
18.77627355
vioscreen_time
20.0
vioscreen_totaltfa
2.925945125
vioscreen_totcla
0.263068505
vioscreen_totfolat
852.1333048
vioscreen_totsugar
142.41349530000002
vioscreen_tryptoph
4.757425219
vioscreen_tyrosine
16.18926183
vioscreen_user_id
20980.0
vioscreen_v_drkgr
1.368958941
vioscreen_v_orange
0.157616435
vioscreen_v_other
2.463451981
vioscreen_v_potato
0.175808214
vioscreen_v_starcy
0.201095895
vioscreen_v_tomato
0.250465748
vioscreen_v_total
4.617397193
vioscreen_valine
23.58254762
vioscreen_veg5_day
11.7
vioscreen_vegetable_servings
3.0
vioscreen_vegsumm
9.2
vioscreen_visit
1.0
vioscreen_vita_iu
26764.18904
vioscreen_vita_rae
2567.2702050000003
vioscreen_vita_re
3659.8513700000003
vioscreen_vitb12
19.87906812
vioscreen_vitb6
8.463479238
vioscreen_vitc
410.5309932
vioscreen_vitd
18.57805544
vioscreen_vitd2
0.0
vioscreen_vitd3
18.57805544
vioscreen_vitd_iu
743.1222175
vioscreen_vite_iu
91.91923159
vioscreen_vitk
571.0919092
vioscreen_water
2688.159418
vioscreen_weight
Not provided
vioscreen_wgrain
2.0948218780000003
vioscreen_whole_grain_servings
0.88989
vioscreen_xylitol
0.061863008
vioscreen_zinc
58.88786922
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
95.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Regularly (3-5 times/week)
whole_grain_frequency
Regularly (3-5 times/week)