human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-05
External Id
SAMEA3947498
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-05T23:09:14Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000029531
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
63
age_corrected
63.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
Yes
alcohol_types_red_wine
true
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
false
allergic to i have no food allergies that i know of
true
allergic_to
Not provided
allergic_to_other
false
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
false
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000029531
antibiotic_history
Month
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
Diagnosed by a medical professional (doctor, physician assistant)
birth year
1953
bmi
31.17
bmi_cat
Obese
bmi_corrected
31.17
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
Four
bowel_movement_quality
Not provided
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
false
cdiff
I do not have this condition
census_region
Not provided
chickenpox
Yes
clinical condition
I do not have this condition
collection date
07/05/2015
collection month
July
collection season
Summer
collection time
21:15
collection_timestamp
2015-07-05 21:15
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
United Kingdom
country of birth
United Kingdom
country_residence
Not provided
csection
false
deodorant_use
I use deodorant
depression_bipolar_schizophrenia
Diagnosed by a medical professional (doctor, physician assistant)
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Not provided
elevation
58.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Occasionally (1-2 times/week)
exercise_location
Depends on the season
fed_as_infant
Primarily breast milk
fermented_plant_frequency
Rarely (less than once/week)
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Rarely (less than once/week)
fruit_frequency
Regularly (3-5 times/week)
fungal_overgrowth
Diagnosed by a medical professional (doctor, physician assistant)
geo loc name
United Kingdom:Unspecified
gluten
No
has_physical_specimen
true
height cm
172
height_units
centimeters
high_fat_red_meat_frequency
Occasionally (1-2 times/week)
homecooked_meals_frequency
Daily
host common name
human
host subject id
e06801b115c62c05e41320299d68dbf23adccfb6f99bbf15e79ad3f2bdf14e30fedf60e151c9163ef107bf78bc9f0d8b2e83efe7e7f942c2f126fed31ad160c3
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
Diagnosed by a medical professional (doctor, physician assistant)
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
1 year
latitude
51.4
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
No
longitude
-0.9
lowgrain_diet_type
false
lung disease
I do not have this condition
meat_eggs_frequency
Regularly (3-5 times/week)
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Daily
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
true
nail_biter
true
non_food_allergies
Not provided
non_food_allergies_beestings
true
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
true
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Daily
one_liter_of_water_a_day_frequency
Regularly (3-5 times/week)
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Rarely (a few times/month)
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Rarely (less than once/week)
red_meat_frequency
Occasionally (1-2 times/week)
roommates_in_study
No
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000029531
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
Yes
sex
female
sibo
I do not have this condition
skin_condition
Diagnosed by a medical professional (doctor, physician assistant)
sleep_duration
6-7 hours
smoking_frequency
Never
softener
Yes
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
Not provided
subset_age
True
subset_antibiotic_history
False
subset_bmi
False
subset_diabetes
True
subset_healthy
False
subset_ibd
True
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Daily
survey_id
94f1292f6c33a91a
teethbrushing_frequency
Daily
thyroid
Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.104904112
vioscreen_a_cal
12.91161708
vioscreen_acesupot
0
vioscreen_activity_level
Not provided
vioscreen_add_sug
19.71137093
vioscreen_addsugar
110.9386665
vioscreen_adsugtot
101.1432042
vioscreen_age
215
vioscreen_alanine
7.605397849
vioscreen_alcohol
1.799287644
vioscreen_alcohol_servings
0.1049
vioscreen_alphacar
4960.639041
vioscreen_alphtoce
19.46002916
vioscreen_alphtoco
17.23221854
vioscreen_arginine
8.651454142
vioscreen_ash
44.95696169
vioscreen_aspartam
0
vioscreen_aspartic
15.11950851
vioscreen_avcarb
408.3047517
vioscreen_bcodeid
Not provided
vioscreen_betacar
16938.88082
vioscreen_betacryp
177.1905715
vioscreen_betaine
375.2797517
vioscreen_betatoco
0.555863137
vioscreen_biochana
0.02449315
vioscreen_bmi
Not provided
vioscreen_caffeine
589.1110445
vioscreen_calcium
Yes
vioscreen_calcium_avg
1500
vioscreen_calcium_dose
1500
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
4.37879
vioscreen_calcium_servings
6.79203
vioscreen_calories
3805.216438
vioscreen_carbo
456.1693065
vioscreen_cholest
572.8829623
vioscreen_choline
759.9617295
vioscreen_clac9t11
0.316657497
vioscreen_clat10c12
0.061178077
vioscreen_copper
2.920465673
vioscreen_coumest
0.145123291
vioscreen_cystine
1.945698443
vioscreen_d_cheese
0.947917781
vioscreen_d_milk
3.042246696
vioscreen_d_tot_soym
4.378794213
vioscreen_d_total
4.378794213
vioscreen_d_yogurt
0.373835608
vioscreen_daidzein
0.565479477
vioscreen_database
NDSR - V44
vioscreen_delttoco
4.718520575
vioscreen_discfat_oil
34.1296982
vioscreen_discfat_sol
92.3677226
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.002520548
vioscreen_f_citmlb
0.676438339
vioscreen_f_nj_citmlb
0.667643842
vioscreen_f_nj_other
1.585671454
vioscreen_f_nj_total
2.253370144
vioscreen_f_other
2.014329048
vioscreen_f_total
2.690822152
vioscreen_fat
155.5140197
vioscreen_fiber
47.82591503
vioscreen_fibh2o
12.45216315
vioscreen_fibinso
35.41830051
vioscreen_finished
7/5/15
vioscreen_fish_servings
4.2525
vioscreen_fol_deqv
836.4768836
vioscreen_fol_nat
611.2187928
vioscreen_fol_syn
132.4154752
vioscreen_formontn
0.001643836
vioscreen_fried_fish_servings
0
vioscreen_fried_food_servings
0.07671
vioscreen_frt5_day
3.6
vioscreen_frtsumm
5.4
vioscreen_fructose
39.28578767
vioscreen_fruit_servings
3
vioscreen_g_nwhl
4.436137495
vioscreen_g_total
8.309781678
vioscreen_g_whl
3.873671273
vioscreen_galactos
1.293698664
vioscreen_gammtoco
19.60292567
vioscreen_gender
F
vioscreen_genistn
0.545205479
vioscreen_glac
183.9912457
vioscreen_gltc
202.6456978
vioscreen_glucose
39.6042728
vioscreen_glutamic
30.92490636
vioscreen_glycine
6.414409648
vioscreen_glycitn
0.196493154
vioscreen_grams
6429.878767
vioscreen_hei2010_dairy
8.9
vioscreen_hei2010_empty_calories
12.5
vioscreen_hei2010_fatty_acids
0.7
vioscreen_hei2010_fruit
4.4
vioscreen_hei2010_greens_beans
5
vioscreen_hei2010_protien_foods
5
vioscreen_hei2010_refined_grains
10
vioscreen_hei2010_score
68.3
vioscreen_hei2010_sea_foods_plant_protiens
5
vioscreen_hei2010_sodium
0
vioscreen_hei2010_veg
5
vioscreen_hei2010_whole_fruit
5
vioscreen_hei2010_whole_grains
6.8
vioscreen_hei_drk_g_org_veg_leg
5
vioscreen_hei_fruit
4.4
vioscreen_hei_grains
3.6
vioscreen_hei_meat_beans
10
vioscreen_hei_milk
8.9
vioscreen_hei_non_juice_frt
5
vioscreen_hei_oils
7.5
vioscreen_hei_sat_fat
0.6
vioscreen_hei_score
66.1
vioscreen_hei_sodium
0
vioscreen_hei_sol_fat_alc_add_sug
12.7
vioscreen_hei_veg
5
vioscreen_hei_whl_grains
3.4
vioscreen_height
Not provided
vioscreen_histidin
4.448136505
vioscreen_inositol
0.193945187
vioscreen_iron
21.84758936
vioscreen_isoleuc
7.30734161
vioscreen_isomalt
0
vioscreen_joules
15921.02466
vioscreen_juice_servings
0.87488
vioscreen_lactitol
0
vioscreen_lactose
42.96470997
vioscreen_legumes
0.124356163
vioscreen_leucine
12.49712516
vioscreen_line_gi
891.7250856
vioscreen_low_fat_dairy_serving
0.46868
vioscreen_lutzeax
10571.61849
vioscreen_lycopene
13258.52192
vioscreen_lysine
11.51876739
vioscreen_m_egg
0.825068476
vioscreen_m_fish_hi
0.97032872
vioscreen_m_fish_lo
1.487452008
vioscreen_m_frank
0.73199998
vioscreen_m_meat
3.168274093
vioscreen_m_mpf
8.493972068
vioscreen_m_nutsd
0.925260277
vioscreen_m_organ
0
vioscreen_m_poult
2.136054721
vioscreen_m_soy
0.048246577
vioscreen_magnes
748.3257705
vioscreen_maltitol
0
vioscreen_maltose
5.816247057
vioscreen_mangan
10.39471385
vioscreen_mannitol
0.904492856
vioscreen_methhis3
32.73370077
vioscreen_methion
3.712465887
vioscreen_mfa141
0.257671241
vioscreen_mfa161
2.348055069
vioscreen_mfa181
48.08076841
vioscreen_mfa201
0.542931502
vioscreen_mfa221
0.133260283
vioscreen_mfatot
51.7643033
vioscreen_multi_calcium_avg
200
vioscreen_multi_calcium_dose
200
vioscreen_multivitamin
Yes
vioscreen_multivitamin_freq
7
vioscreen_natoco
17.23221854
vioscreen_nccglbr
330.1702911
vioscreen_nccglgr
230.9525043
vioscreen_niacin
41.27826948
vioscreen_niacineq
71.17437928
vioscreen_nitrogen
26.63115903
vioscreen_non_fried_fish_servings
4.2525
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
3.491725974
vioscreen_oxalic
701.3393836
vioscreen_oxalicm
693.0284675
vioscreen_pantothe
11.76701225
vioscreen_pectins
8.122110445
vioscreen_pfa182
24.56375214
vioscreen_pfa183
2.905780782
vioscreen_pfa184
0.032712325
vioscreen_pfa204
0.255315075
vioscreen_pfa205
0.157041106
vioscreen_pfa225
0.073835613
vioscreen_pfa226
0.324410948
vioscreen_pfatot
28.48665186
vioscreen_phenylal
7.049808032
vioscreen_phosphor
2812.029452
vioscreen_phytic
1277.661729
vioscreen_pinitol
0.02041096
vioscreen_potass
7570.866438
vioscreen_procdate
10/28/15
vioscreen_proline
10.13860164
vioscreen_protanim
113.4960402
vioscreen_protein
164.6892123
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
51.189817
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
317
vioscreen_retinol
935.5702911
vioscreen_rgrain
4.811670591
vioscreen_ribofla
4.248164598
vioscreen_sacchar
0
vioscreen_salad_vegetable_servings
2.94458
vioscreen_satoco
0
vioscreen_selenium
235.0028039
vioscreen_serine
7.469122565
vioscreen_sfa100
1.821781023
vioscreen_sfa120
3.316274481
vioscreen_sfa140
6.765288554
vioscreen_sfa160
30.45471693
vioscreen_sfa170
0.383698597
vioscreen_sfa180
13.6203018
vioscreen_sfa200
0.300794481
vioscreen_sfa220
0.254547934
vioscreen_sfa40
2.124356037
vioscreen_sfa60
1.219397391
vioscreen_sfa80
0.937369987
vioscreen_sfatot
61.93085402
vioscreen_sodium
8112.426027
vioscreen_sorbitol
1.45539718
vioscreen_srvid
20074
vioscreen_starch
145.4678724
vioscreen_started
7/5/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0
vioscreen_sucrlose
0
vioscreen_sucrose
95.29981807
vioscreen_sweet_servings
2.08195
vioscreen_tagatose
4.934767297
vioscreen_tfa161t
0.104109589
vioscreen_tfa181t
3.964082566
vioscreen_tfa182t
0.761863061
vioscreen_tgrain
8.340822319
vioscreen_thiamin
2.698603215
vioscreen_threonin
6.389946088
vioscreen_time
30
vioscreen_totaltfa
5.057177734
vioscreen_totcla
0.377890349
vioscreen_totfolat
743.6340753
vioscreen_totsugar
225.8482235
vioscreen_tryptoph
1.796301437
vioscreen_tyrosine
5.732383749
vioscreen_user_id
20074
vioscreen_v_drkgr
0.665178106
vioscreen_v_orange
0.850273989
vioscreen_v_other
2.298767257
vioscreen_v_potato
1.360246549
vioscreen_v_starcy
0.374109556
vioscreen_v_tomato
1.209835606
vioscreen_v_total
6.75811082
vioscreen_valine
8.403973138
vioscreen_veg5_day
9.3
vioscreen_vegetable_servings
4
vioscreen_vegsumm
13.5
vioscreen_visit
1
vioscreen_vita_iu
35632.08767
vioscreen_vita_rae
2561.223459
vioscreen_vita_re
4186.872945
vioscreen_vitb12
10.03041056
vioscreen_vitb6
3.873314426
vioscreen_vitc
193.0201627
vioscreen_vitd
17.36953393
vioscreen_vitd2
0.001150685
vioscreen_vitd3
17.36841021
vioscreen_vitd_iu
694.781357
vioscreen_vite_iu
25.65265143
vioscreen_vitk
426.3648973
vioscreen_water
5677.315411
vioscreen_weight
Not provided
vioscreen_wgrain
3.529150725
vioscreen_whole_grain_servings
3.87367
vioscreen_xylitol
0.076575339
vioscreen_zinc
21.79150524
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
92
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Occasionally (1-2 times/week)
whole_grain_frequency
Regularly (3-5 times/week)