human gut metagenome
ENA first public
2016-04-28
ENA last update
2017-08-06
External Id
SAMEA3947491
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2016-04-28T17:02:25Z
INSDC last update
2017-08-06T13:25:40Z
INSDC status
public
Submitter Id
qiita_sid_10317:10317.000028866
acid_reflux
Not provided
acne medication
false
acne_medication_otc
false
add_adhd
I do not have this condition
age cat
60s
age years
62.0
age_corrected
62.0
alcohol consumption
true
alcohol_frequency
Rarely (a few times/month)
alcohol_types
Not provided
alcohol_types_beercider
false
alcohol_types_red_wine
false
alcohol_types_sour_beers
false
alcohol_types_spiritshard_alcohol
false
alcohol_types_unspecified
false
alcohol_types_white_wine
true
allergic to i have no food allergies that i know of
false
allergic_to
Not provided
allergic_to_other
true
allergic_to_peanuts
false
allergic_to_shellfish
false
allergic_to_tree_nuts
true
allergic_to_unspecified
false
alzheimers
I do not have this condition
anonymized name
000028866
antibiotic_history
I have not taken antibiotics in the past year.
appendix_removed
false
artificial_sweeteners
Not provided
asd
I do not have this condition
autoimmune
I do not have this condition
birth year
1953.0
bmi
23.59
bmi_cat
Normal
bmi_corrected
23.59
body habitat
UBERON:feces
body product
UBERON:feces
body site
UBERON:feces
bowel_movement_frequency
One
bowel_movement_quality
I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure
false
cancer
Not provided
cancer treatment
Not provided
cardiovascular_disease
I do not have this condition
cat
true
cdiff
I do not have this condition
census_region
West
chickenpox
Yes
clinical condition
I do not have this condition
collection date
2015-06-29
collection month
June
collection season
Summer
collection time
10:50
collection_timestamp
2015-06-29 10:50
consume_animal_products_abx
Yes
contraceptive
No
cosmetics_frequency
Never
country
USA
country of birth
United States
country_residence
Not provided
csection
false
deodorant_use
I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia
Not provided
diabetes
I do not have this condition
diabetes type
Not provided
diet type
Omnivore
dna_extracted
true
dog
false
dominant hand
I am right handed
drinking_water_source
Filtered
drinks_per_session
Not provided
economic_region
Southwest
elevation
429.8
env biome
dense settlement biome
env feature
human-associated habitat
env package
human-gut
env_material
feces
epilepsy_or_seizure_disorder
I do not have this condition
exercise_frequency
Daily
exercise_location
Both
fed_as_infant
Primarily infant formula
fermented_plant_frequency
Not provided
flossing_frequency
Rarely (a few times/month)
flu_vaccine_date
I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency
Never
fruit_frequency
Daily
fungal_overgrowth
I do not have this condition
geo loc name
USA
gluten
I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease
has_physical_specimen
true
height cm
157.0
height_units
centimeters
high_fat_red_meat_frequency
Daily
homecooked_meals_frequency
Regularly (3-5 times/week)
host common name
human
host subject id
6f2e0faa34599cbf423ef4fe92afd3510f2fd9233d9b33578c78fb50423c1cc03e76fd1b0730f5f443230d9d59ec5789037c0350d999e920330bdb0ee9364232
host taxid
9606
ibd
I do not have this condition
ibd diagnosis
Not provided
ibd_diagnosis_refined
Not provided
ibs
I do not have this condition
kidney_disease
I do not have this condition
lactose
false
last_move
I have lived in my current state of residence for more than a year.
last_travel
I have not been outside of my country of residence in the past year.
latitude
33.6
level_of_education
Graduate or Professional degree
liver_disease
I do not have this condition
livingwith
Yes
longitude
-111.9
lowgrain_diet_type
true
lung disease
I do not have this condition
meat_eggs_frequency
Daily
mental_illness
Not provided
mental_illness_type
Not provided
mental_illness_type_anorexia_nervosa
Not provided
mental_illness_type_bipolar_disorder
Not provided
mental_illness_type_bulimia_nervosa
Not provided
mental_illness_type_depression
Not provided
mental_illness_type_ptsd_posttraumatic_stress_disorder
Not provided
mental_illness_type_schizophrenia
Not provided
mental_illness_type_substance_abuse
Not provided
mental_illness_type_unspecified
Not provided
migraine
I do not have this condition
milk_cheese_frequency
Never
milk_substitute_frequency
Rarely (less than once/week)
multivitamin
false
nail_biter
false
non_food_allergies
Not provided
non_food_allergies_beestings
false
non_food_allergies_drug_eg_penicillin
true
non_food_allergies_pet_dander
false
non_food_allergies_poison_ivyoak
false
non_food_allergies_sun
false
non_food_allergies_unspecified
false
olive_oil
Rarely (less than once/week)
one_liter_of_water_a_day_frequency
Daily
other_supplement_frequency
true
pets_other
Not provided
physical_specimen_location
UCSDMI
physical_specimen_remaining
true
pku
I do not have this condition
pool_frequency
Never
poultry_frequency
Occasionally (1-2 times/week)
pregnant
false
prepared_meals_frequency
Occasionally (1-2 times/week)
probiotic_frequency
Daily
public
true
race
Caucasian
ready_to_eat_meals_frequency
Never
red_meat_frequency
Daily
roommates_in_study
Yes
salted_snacks_frequency
Rarely (less than once/week)
sample name
qiita_sid_10317:10317.000028866
sample type
Stool
seafood_frequency
Rarely (less than once/week)
seasonal_allergies
true
sex
female
sibo
I do not have this condition
skin_condition
I do not have this condition
sleep_duration
7-8 hours
smoking_frequency
Never
softener
false
specialized_diet
Not provided
specialized_diet_exclude_dairy
Not provided
specialized_diet_exclude_nightshades
Not provided
specialized_diet_exclude_refined_sugars
Not provided
specialized_diet_fodmap
Not provided
specialized_diet_halaal
Not provided
specialized_diet_i_do_not_eat_a_specialized_diet
Not provided
specialized_diet_kosher
Not provided
specialized_diet_modified_paleo_diet
Not provided
specialized_diet_other_restrictions_not_described_here
Not provided
specialized_diet_paleodiet_or_primal_diet
Not provided
specialized_diet_raw_food_diet
Not provided
specialized_diet_unspecified
Not provided
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo
Not provided
state
AZ
subset_age
true
subset_antibiotic_history
true
subset_bmi
true
subset_diabetes
true
subset_healthy
true
subset_ibd
true
sugar_sweetened_drink_frequency
Never
sugary_sweets_frequency
Rarely (less than once/week)
survey_id
eff9a114b113a095
teethbrushing_frequency
Daily
thyroid
Diagnosed by an alternative medicine practitioner
tonsils_removed
false
types_of_plants
Not provided
vegetable_frequency
Daily
vioscreen_a_bev
0.0
vioscreen_a_cal
0.0
vioscreen_acesupot
0.0
vioscreen_activity_level
Not provided
vioscreen_add_sug
2.111013919
vioscreen_addsugar
9.872685681
vioscreen_adsugtot
9.543068413
vioscreen_age
215.0
vioscreen_alanine
3.5676714339999998
vioscreen_alcohol
0.00030137
vioscreen_alcohol_servings
0.0
vioscreen_alphacar
1567.902568
vioscreen_alphtoce
8.338492616
vioscreen_alphtoco
8.067834974
vioscreen_arginine
3.915287551
vioscreen_ash
15.57879655
vioscreen_aspartam
0.0
vioscreen_aspartic
6.022301744
vioscreen_avcarb
56.27775043
vioscreen_bcodeid
Not provided
vioscreen_betacar
12493.0137
vioscreen_betacryp
55.78835616
vioscreen_betaine
46.19733519
vioscreen_betatoco
0.048931509000000005
vioscreen_biochana
0.001315068
vioscreen_bmi
Not provided
vioscreen_caffeine
0.610794527
vioscreen_calcium
true
vioscreen_calcium_avg
500.0
vioscreen_calcium_dose
500.0
vioscreen_calcium_freq
7
vioscreen_calcium_from_dairy_servings
0.01499
vioscreen_calcium_servings
1.16156
vioscreen_calories
1089.537158
vioscreen_carbo
78.07062821
vioscreen_cholest
201.02360869999998
vioscreen_choline
299.2721104
vioscreen_clac9t11
0.167479465
vioscreen_clat10c12
0.046191782
vioscreen_copper
0.843890464
vioscreen_coumest
0.000410959
vioscreen_cystine
0.733643832
vioscreen_d_cheese
0.0
vioscreen_d_milk
0.014986301
vioscreen_d_tot_soym
0.014986301
vioscreen_d_total
0.014986301
vioscreen_d_yogurt
0.0
vioscreen_daidzein
0.025917807999999997
vioscreen_database
NDSR - V44
vioscreen_delttoco
0.313424641
vioscreen_discfat_oil
4.553890531
vioscreen_discfat_sol
38.5374786
vioscreen_dob
1/1/1800
vioscreen_eer
Not provided
vioscreen_email
Not provided
vioscreen_erythr
0.0014246570000000002
vioscreen_f_citmlb
0.6756438370000001
vioscreen_f_nj_citmlb
0.673589043
vioscreen_f_nj_other
0.626301428
vioscreen_f_nj_total
1.2998629640000001
vioscreen_f_other
0.626301428
vioscreen_f_total
1.301945182
vioscreen_fat
62.87585081
vioscreen_fiber
21.79347977
vioscreen_fibh2o
3.938328406
vioscreen_fibinso
18.27975573
vioscreen_finished
6/29/15
vioscreen_fish_servings
0.37788
vioscreen_fol_deqv
360.273887
vioscreen_fol_nat
358.01277830000004
vioscreen_fol_syn
1.329041113
vioscreen_formontn
0.000547945
vioscreen_fried_fish_servings
0.0
vioscreen_fried_food_servings
0.0
vioscreen_frt5_day
2.0
vioscreen_frtsumm
2.6
vioscreen_fructose
12.96496014
vioscreen_fruit_servings
2.0
vioscreen_g_nwhl
0.079726023
vioscreen_g_total
0.233205487
vioscreen_g_whl
0.15347945300000002
vioscreen_galactos
0.129178076
vioscreen_gammtoco
2.4846027530000003
vioscreen_gender
false
vioscreen_genistn
0.036191781
vioscreen_glac
20.46013618
vioscreen_gltc
23.89049122
vioscreen_glucose
12.94106646
vioscreen_glutamic
9.513971533
vioscreen_glycine
3.3135618439999996
vioscreen_glycitn
0.008273973
vioscreen_grams
2489.466781
vioscreen_hei2010_dairy
0.1
vioscreen_hei2010_empty_calories
9.6
vioscreen_hei2010_fatty_acids
0.4
vioscreen_hei2010_fruit
5.0
vioscreen_hei2010_greens_beans
5.0
vioscreen_hei2010_protien_foods
5.0
vioscreen_hei2010_refined_grains
10.0
vioscreen_hei2010_score
47.4
vioscreen_hei2010_sea_foods_plant_protiens
1.4
vioscreen_hei2010_sodium
0.0
vioscreen_hei2010_veg
5.0
vioscreen_hei2010_whole_fruit
5.0
vioscreen_hei2010_whole_grains
0.9
vioscreen_hei_drk_g_org_veg_leg
5.0
vioscreen_hei_fruit
5.0
vioscreen_hei_grains
0.4
vioscreen_hei_meat_beans
10.0
vioscreen_hei_milk
0.1
vioscreen_hei_non_juice_frt
5.0
vioscreen_hei_oils
3.5
vioscreen_hei_sat_fat
0.0
vioscreen_hei_score
44.4
vioscreen_hei_sodium
0.0
vioscreen_hei_sol_fat_alc_add_sug
9.9
vioscreen_hei_veg
5.0
vioscreen_hei_whl_grains
0.5
vioscreen_height
Not provided
vioscreen_histidin
1.9103835009999999
vioscreen_inositol
0.104739725
vioscreen_iron
8.452383883
vioscreen_isoleuc
2.737342646
vioscreen_isomalt
0.0
vioscreen_joules
4558.627397
vioscreen_juice_servings
0.00411
vioscreen_lactitol
0.0
vioscreen_lactose
0.322547934
vioscreen_legumes
0.0
vioscreen_leucine
4.529890839
vioscreen_line_gi
145.59539809999998
vioscreen_low_fat_dairy_serving
0.0
vioscreen_lutzeax
11943.04247
vioscreen_lycopene
366.672089
vioscreen_lysine
4.817698523
vioscreen_m_egg
0.002
vioscreen_m_fish_hi
0.070493149
vioscreen_m_fish_lo
0.144904108
vioscreen_m_frank
0.555616447
vioscreen_m_meat
4.7198630139999995
vioscreen_m_mpf
5.551260167000001
vioscreen_m_nutsd
0.020630138
vioscreen_m_organ
0.0
vioscreen_m_poult
0.060383564
vioscreen_m_soy
0.000356164
vioscreen_magnes
192.30584330000002
vioscreen_maltitol
0.0
vioscreen_maltose
0.956821975
vioscreen_mangan
2.0843014230000003
vioscreen_mannitol
0.136739726
vioscreen_methhis3
24.38314962
vioscreen_methion
1.4054794519999998
vioscreen_mfa141
0.115945205
vioscreen_mfa161
1.5424931769999999
vioscreen_mfa181
22.25331229
vioscreen_mfa201
0.302712323
vioscreen_mfa221
0.02241096
vioscreen_mfatot
24.30437982
vioscreen_multi_calcium_avg
Not provided
vioscreen_multi_calcium_dose
Not provided
vioscreen_multivitamin
Not provided
vioscreen_multivitamin_freq
Not provided
vioscreen_natoco
8.067834974
vioscreen_nccglbr
43.9113201
vioscreen_nccglgr
30.71849583
vioscreen_niacin
14.64265705
vioscreen_niacineq
24.67120612
vioscreen_nitrogen
10.28191821
vioscreen_non_fried_fish_servings
0.37788
vioscreen_nutrient_recommendation
Default
vioscreen_omega3
1.098492933
vioscreen_oxalic
231.88002999999998
vioscreen_oxalicm
232.03433219999997
vioscreen_pantothe
3.4327125030000003
vioscreen_pectins
5.6479458739999995
vioscreen_pfa182
5.922766615
vioscreen_pfa183
1.042876612
vioscreen_pfa184
0.0032328770000000003
vioscreen_pfa204
0.08852055199999999
vioscreen_pfa205
0.017013699
vioscreen_pfa225
0.010821918
vioscreen_pfa226
0.025315068
vioscreen_pfatot
7.223971934
vioscreen_phenylal
2.42799992
vioscreen_phosphor
751.5103596
vioscreen_phytic
140.5005137
vioscreen_pinitol
0.000630137
vioscreen_potass
2348.657705
vioscreen_procdate
10/28/15
vioscreen_proline
2.885123475
vioscreen_protanim
47.12635381
vioscreen_protein
63.75422196
vioscreen_protocol
Knight Lab, University of Colorado Boulder
vioscreen_protveg
16.62832834
vioscreen_questionnaire
Egg White Standard Questionnaire (V3)
vioscreen_recno
347.0
vioscreen_retinol
139.0463185
vioscreen_rgrain
0.069369862
vioscreen_ribofla
0.94630152
vioscreen_sacchar
0.0
vioscreen_salad_vegetable_servings
1.38934
vioscreen_satoco
0.0
vioscreen_selenium
59.50855094
vioscreen_serine
2.498328807
vioscreen_sfa100
0.534630177
vioscreen_sfa120
0.552438396
vioscreen_sfa140
2.14265722
vioscreen_sfa160
13.74287778
vioscreen_sfa170
0.14169863300000002
vioscreen_sfa180
6.662493311
vioscreen_sfa200
0.072136986
vioscreen_sfa220
0.015506852
vioscreen_sfa40
0.622164374
vioscreen_sfa60
0.383643832
vioscreen_sfa80
0.230191772
vioscreen_sfatot
25.14895923
vioscreen_sodium
2772.570034
vioscreen_sorbitol
0.5419178170000001
vioscreen_srvid
20009.0
vioscreen_starch
9.560027825
vioscreen_started
6/29/15
vioscreen_subject_id
Not provided
vioscreen_sucpoly
0.0
vioscreen_sucrlose
0.0
vioscreen_sucrose
11.10416444
vioscreen_sweet_servings
0.09487999999999999
vioscreen_tagatose
0.420246574
vioscreen_tfa161t
0.062493154
vioscreen_tfa181t
1.273260331
vioscreen_tfa182t
0.188000008
vioscreen_tgrain
0.22279452
vioscreen_thiamin
0.879369783
vioscreen_threonin
2.524164404
vioscreen_time
28.0
vioscreen_totaltfa
1.527643909
vioscreen_totcla
0.21273970899999997
vioscreen_totfolat
359.3418236
vioscreen_totsugar
39.19202162
vioscreen_tryptoph
0.602821914
vioscreen_tyrosine
1.9356985430000002
vioscreen_user_id
20009.0
vioscreen_v_drkgr
2.4210409090000002
vioscreen_v_orange
0.426575376
vioscreen_v_other
1.1359177679999999
vioscreen_v_potato
0.0
vioscreen_v_starcy
0.037232877000000004
vioscreen_v_tomato
0.030246575
vioscreen_v_total
4.05101402
vioscreen_valine
3.0710138189999996
vioscreen_veg5_day
8.8
vioscreen_vegetable_servings
7.0
vioscreen_vegsumm
8.1
vioscreen_visit
1.0
vioscreen_vita_iu
22637.09863
vioscreen_vita_rae
1247.784675
vioscreen_vita_re
2356.5258559999997
vioscreen_vitb12
2.891123649
vioscreen_vitb6
1.606739786
vioscreen_vitc
242.38420380000002
vioscreen_vitd
1.738383588
vioscreen_vitd2
0.0
vioscreen_vitd3
1.738383588
vioscreen_vitd_iu
69.53534354
vioscreen_vite_iu
12.04364432
vioscreen_vitk
664.1412671
vioscreen_water
2273.282534
vioscreen_weight
Not provided
vioscreen_wgrain
0.15342465800000002
vioscreen_whole_grain_servings
0.15348
vioscreen_xylitol
0.044082197000000004
vioscreen_zinc
8.975589282
vitamin_b_supplement_frequency
Daily
vitamin_d_supplement_frequency
Daily
vivid_dreams
Not provided
weight kg
58.0
weight_change
Remained stable
weight_units
kilograms
whole_eggs
Never
whole_grain_frequency
Never