human metagenome
collection_date
2012-12-21
env_biome
terrestrial biome [ENVO:00000446]
env_feature
N/A
env_material
feces(ENVO:00002003)
geo_loc_name
USA: Palo Alto,CA
host
Homo sapiens
lat_lon
37.441883 N 122.143019 W
experimental_factor
human-gut
samp_collect_device
self-sample
lib_size
700
lib_const_meth
paired end 16S 454 Amp protocol
target_gene
16S rRNA
target_subfragment
V1-V3
adapters
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATGCCGTCTTCTGCTTG,AATGATACGGCGACCACCGAGATCTACACCAGGACGTACACTCTTTCCCTACACGACGCTCTTCCGATCT
pcr-cond
initial denaturation: 95C_2min; [denaturation: 95C_20sec; anealing: 56C_30sec; extension: 72C_5min]-30 cycles: hold: 4C
seq_meth
nextgen
subjectid
ZN9YTFN
gender
female
samp_desc
HMP2_J00827_1_ST_T0_B0_0120_ZN9YTFN-1012_AA31J sample from feces(ENVO:00002003) of female subject ZN9YTFN
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated