Homo sapiens
Human vaginal metagenome
isolate
cervix_fornix25
biomaterial_provider
SACAICET_Maria_Gloria_Dominguez_Rugerts_University
TITLE
Vaginal bacterial microbiota and Human Papillomavirus spanning urbanization Amerindians and mestizos
ANONYMIZED_NAME
393
scientific_name
Human vaginal metagenome
TAXON_ID
1632839
sample_type
cervix_fornix
ELEVATION
100m
ENV_BIOME
Semiurban_biome
ENV_FEATURE
human_associated_habitat
ENV_MATERIAL
mucose
tissue
Human_vaginal_cervix_fornix
LATITUDE
5.663361
LONGITUDE
-67.610167
COLLECTION_TIMESTAMP
2015
dna_extracted
True
physical_specimen_location
NYU
physical_specimen_remaining
True
host_subject_id
25
age
17 years
sex
female
sampling_location_region
alto_carinagua
birthday
1998-01-15T00:00:00
village_of_pacient
alto_carinagua
Urbanization_index_according_to_community_urban_level_from_0_to_1_(Vargas-Robles, et al.2018)
0.763511905
age_range
Teen
urbanization_level_ame
High
BMI_clasification
Normal
body_temperature_C
37
weight_kg_
43.2
height_m
1.4
BMI
22
blood_pressure_High_mmHg_
111
blood_pressure_low_mmHg_
69
hemoglobine_g_dl_
12.1
Anemia
No
cholesterol_mg_dl_
220
glicemia_mg_dl_
97
last_meal_hours
4.5
glicemia_status
Normal
Vision_average_right_and_left_eye_up_to_from0_to_11
11
skin_lesions_yes_no
No
flat_feet_yes_no
Yes
athleat_feet_yes_no_
No
back_ache_yes_no_
Yes
caries_presence_few_moderate_many
Few
ph_vaginal
4
cervical_biopsy_needed_yes_no_
No
treatment_prescribed_by_dr_after_sampling_no_or_which
No
speaks_spanish_level_none_medium_High
not provided
cigarette_consumption_history_yes_no_
No
cigarette_consumption_currently_yes_no_
No
time_smoking_years
not provided
number_cigarret_daily
not provided
yaraque_consumption_yes_no
No
alcohol_consumption_in_life_yes_no_
No
alcohol_consumption_currently_yes_no_
not provided
time_drinking_alcohol_years
not provided
weekly_alcohol_consumption_years
not provided
hospitalization_history_yes_no
Yes
quirurgic_intervention_history_yes_no
Yes
menarche_age
12
number_pregnancies
1
number_pregnancies_range
one_two
age_of_first_pregnancy
14
number_of_natural_birth_giving
1
number_of_C_section
not provided
number_preterm_births
None
number_aborts
0
number_alive_kids
1
breast_feeding_currently_yes_no
Yes
presence_of_monthly_period_yes_no
Yes
menstrual_ciclycling_status_regular_25_35_days_irregular_other_frequency
Regular
patient_type_of_born_natural_c_section
Natural
patient_was_breast_feed_as_a_child_yes_no
Yes
time_patient_was_breast_fed_as_a_child_years
2
cytology_performance_history
Yes
time_since_last_cytology_test
whithin_the_past_year
diagnostic_of_last_cytology
severe_inflamation_unespecific
cervical_biopsy_history
No
age_or_the_first_sexual_contact
14
number_sexual_couple_history
1
number_sexual_couple_history_range
one
sexual_contact_history_with_Mestizo_yes_no
No
number_sexual_partner_last_60_days
one
last_sexual_contact_days
not provided
last_sexual_contact_weeks_numbers
more_than_one_week
type_of_sexual_contact_usually_practiced_vaginal_anal_oral
Vaginal
frequency_of_sexual_contact_weekly
2-4_times
use_of_contraceptives_history
No
current_use_of_contraceptives
No
current_contraceptive_method
None
current_contraceptive_method_hormonal
No
brand_contraceptive
not provided
use_of_contraceptives_years
not provided
quirurgic_sterilization
No
medicine_use_history
Yes
antibiotic_use_history
Yes
time_of_the_last_antibiotic_consumption_last_year_range
more_than_4 months
last_antibiotic_name
not provided
antiparasitary_use_history
Yes
time_of_the_last_antiparatitary_consumption_year_range
more_than_4 months
menstrual_protection_pads_clothpads_tampons
cloth_pads
use_of_vaginal_lubricant
Yes
use_of_vaginal_douch
No
frequency_of_vaginal_douch_a_year
not provided
use_of_common_soap_for_vaginal_hygiene
Yes
teeth_wash_products
paste_brush
parasite species
Endolimax nana, Iodamoeba butschlii, Ancilostomideos
number_sp_intestinal_parasites
3
intestinal_parasites_presence_yes_no
Yes
percentage_of_traditional_diet
65
health_history
influenza_dengue_malaria
observation
not provided
Wash_teeth_with_cream_daily_yes_no
no
shoes_always_to_go_out_never
to_go_out
house_floor_type_concret_soil_concret_1_concret_soil_0_5_soil_0
soil
treatment_drinking_water_yes_no
no
source_drink_tap_water_well_rain_or_river
rain_or_river
contraceptive_use_history_yes_noo_y_yes_no_no
no
use_medication_frequency_monthly_or_more_frequent_annual_or_biannual_less_than_annual_or_never
annual_or_biannual
hospitalized_ever_yes_no
yes
surgery_ever_yes_no
no
eat_3_times_a_day_yes_no
no
diet_24_traditional_mix_processed
traditional
diet_7days_traditional_mix_processed
mixed
finished_elementary_school_yes_no
Yes
finished_highschool_yes_no
No
spanish_speaking_level_high_medium_low_or_nothing
Low
spanish_writing_yes_no
Yes
piaroa_speaking_yes_no
Yes
have_identification_document_yes_no
Yes
have_birth_certificate_yes_no
Yes
have_their_own_crop_yes_no
Yes
work_for_mony_last_2_years_yes_no
Yes
household_monthly_income_lessthanminsalary_or_none_minsalary_more_thanminsalaries
more_than_one_min_salary
proportion_of_goods_quanties_radio_tv_DVD_blender_fridge_washingmachine_phone_boiler_car_motorcycle_boatmotor_boat_computer_tvcable_1
0.090909091
sleep_place_bed_both_hammac
hammac
food_interchange_practice_yes_no
Yes
women_did_piaroa_traditional_rite_in_first_period_yes_similar_no
similar
patient_keep_piaroa_traditional_rite_of_not_eating_big_animals_yes_similar_no
Yes
malaria_infection_healing_preference_healthcenter(hc)_both_shaman
hc
headache_healing_preference_pills_homemade_medicine_none
pills
snake_bit_healing_preference_healthcenter(hc)_herbs_shaman
shaman
contraceptive_method_acceptace_yes_no
Yes
presence_health_staff_during_birth_giving_acceptance_level_high_medium_low
High
Patient_vaginal_infection_symptoms_currently
Yes
HPV_only_high_risk_both
1only_low_risk
HPV_only_high_risk_both_no_neg
1only_low_risk
Helminths
yes
Single_or_multiple_HPV
1Single_type
Single_or_multiple_HPV_no_neg
1Single_type
Cervical_lesion_cytology_and_biopsy
not provided
cervical_inflammation
Low_infl
Cervical_lesion_by_cytology_or_biopsy_yes_no
No
CST_dendrogram_introitus_cervix
CSTIII_iners
ph_range
4-4.7
Sample_with_alpha_values
Yes
ethnic_group
1Piaroa
ind_urb_group
1Low
Bacterial_vaginosis_presence_more_than20%of_clue_cells_in_smear
No
Introitus_HPV_detection_Lipa25
not provided
Oral_HPV_detection_Lipa25
not provided
Anal_HPV_detection_Lipa25
not provided
Cervical_fornix_HPV_detection_Lipa25
1pos
Cervical_fornix_HPV_risk_detection_Lipa_25
1No_high_risk
Cervical_fornix_HPV_risk_detection_Lipa_25_3cat
No_high_risk
HPV_types
53
Days_from_the_biginning_of_the_last_period
33
menstrual_cycle_phase
Luteal
Cervical_citology_B_biopsia_results_
Low_infl
HIV
Neg
VDRL
No_reactive
Core_hepatitis_B_Antigen
Neg
surface_antigen_hepatitis_B
Neg
Hepatitis_C
Neg
BioSampleModel
Human