Homo sapiens
Protocols: Chromatin IPs were conducted with an antibody directed against H3K4me3 (Bethyl Laboratories, #A300-055A) comparable to ChIP experiments described in Woellmer et al (2012) (Woellmer A, Arteaga-Salas JM, Hammerschmidt W (2012) BZLF1 governs CpG-methylated chromatin of Epstein-Barr virus reversing epigenetic repression. PLoS Pathog 8:e1002902. doi: 10.1371/journal.ppat.1002902). DNA fragments were isolated in principle as described in Woellmer et al (2012) (Woellmer A, Arteaga-Salas JM, Hammerschmidt W (2012) BZLF1 governs CpG-methylated chromatin of Epstein-Barr virus reversing epigenetic repression. PLoS Pathog 8:e1002902. doi: 10.1371/journal.ppat.1002902). The library construction was performed by the company Vertis Biotechnology AG (Freising, Germany) using TrueSeq sequencing adaptors and DNA fragments of 300 to 500 nt in length.
ENA-FIRST-PUBLIC
2020-06-29T04:03:39Z
ENA-LAST-UPDATE
2019-10-11T10:34:50Z
External Id
SAMEA6064646
INSDC center name
Research Unit Gene Vectors Helmholtz Zentrum Munchen German Research Center for Environmental Health and German Center for Infection Research (DZIF), Partner site Munich, Germany
INSDC first public
2020-06-29T04:03:39Z
INSDC last update
2019-10-11T10:34:50Z
INSDC status
public
Submitter Id
E-MTAB-8428:Raji iBZLF1 4816 ChIP 0 h anti SMC1
broker name
ArrayExpress
cell line
Raji
cell type
B-cell
common name
human
disease
Burkitts lymphoma
genotype
p4816_BZLF1
sample name
E-MTAB-8428:Raji iBZLF1 4816 ChIP 0 h anti SMC1
scientific_name
Homo sapiens