s09SS_r1297
009_LXA
collection_date
2014-05-08
env_biome
Skin Swab
env_feature
Skin Swab
env_material
Skin Swab
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
7/2/2015
Custom_Index
AGTCCATAGCTG
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AFV88
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150702_M00710_0038_000000000-AFV88
Sample_Concentration
0.9
Sample_Volume
50
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
38
Sequencing_Run_Type
MiSeq_PE_300_Run
Pool_Name
Hieken1_060815
batch
3
Age
77
BMI
27.7
Body_weight_kg
67.6
Weight_category
1
Smoker_status
Never_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
Yes
Gravidity
5
Parity
3
Year_of_last_parity
NO_INPUT
Breastfed_ever
Yes
How_long_breastfed_cumulative
_1_year
Menopausal_status
Post-menopause
Neoadjuvant_therapy
Yes_neoadj_chemotherapy
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
ILC
If_other_please_specify_2
NO_INPUT
Date_of_surgery
5/8/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
1000
abx_time
11_51_00
incision_time
12_06_00
closure_time
14_45_00
specimen_time
13_44_00
time_from_incision_to_specimen
98
Distance_of_specimen_from_nipple
11.5
dfn_cat
__5_cm
Breast_operation
WLE
Axillary_operation
SLNB_only
Total_number_of_lymph_nodes_remo
4
Number_of_positive_lymph_nodes
0
final_dx
Malignant
Final_pathology_histology_
ILC
Secondary_Pathology_associated_
LCIS
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
T1a
Pathologic_N_stage
N0
Pathologic_M_stage
M0
Pathologic_TNM_stage
IA
ER_status
_75_
PR_status
1-10_
HER2
2_
HER2_FISH
Amplified
Invasive_Grade
I
Grade_for_DCIS
NO_INPUT
Age_menopause
50
years_since_menopause
27
days_since_last_period
NO_INPUT
days_biop_to_surg
238
min_abx_to_specimen
113
erpos
1
prpos
1
Final_histology_more_detail
ILC
BBD_Category
NO_INPUT
bxtosx_gt28days
1
dist_nipple_gt2
1
agecat_1
75_
agecat_2
56_
simple_id
9
histology_cat
InvCa
t2specimen_cat
91-120mi
bmi_cat
25-29.9
her2pos
1
any_children
1
enrolltime
1
histology_cat2
InvCa
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated