s08SS_r1268
008_KAE
collection_date
2014-05-09
env_biome
Skin Swab
env_feature
Skin Swab
env_material
Skin Swab
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
2/13/2015
Custom_Index
TCTGAGTCTGAG
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-ADTR5
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150213_M00738_0017_000000000-ADTR5
Sample_Concentration
65
Sample_Volume
50
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
17
Sequencing_Run_Type
MiSeq_PEIn_300_Run
Pool_Name
NO_INPUT
batch
2
Age
59
BMI
26.7
Body_weight_kg
80.5
Weight_category
2
Smoker_status
Never_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
Yes_NIDDM
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
2
Parity
2
Year_of_last_parity
NO_INPUT
Breastfed_ever
No
How_long_breastfed_cumulative
NO_INPUT
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
IMC
If_other_please_specify_2
NO_INPUT
Date_of_surgery
5/9/2014
Preoperative_Hibiclens_wash_doc
Yes
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
2000
abx_time
12_40_00
incision_time
12_52_00
closure_time
14_38_00
specimen_time
14_02_00
time_from_incision_to_specimen
70
Distance_of_specimen_from_nipple
7
dfn_cat
__5_cm
Breast_operation
WLE
Axillary_operation
SLNB_only
Total_number_of_lymph_nodes_remo
1
Number_of_positive_lymph_nodes
0
final_dx
Malignant
Final_pathology_histology_
IDC
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
T1c
Pathologic_N_stage
N0
Pathologic_M_stage
M0
Pathologic_TNM_stage
IA
ER_status
_75_
PR_status
26-50_
HER2
1_
HER2_FISH
Not_Performed
Invasive_Grade
I
Grade_for_DCIS
NO_INPUT
Age_menopause
56
years_since_menopause
3
days_since_last_period
NO_INPUT
days_biop_to_surg
24
min_abx_to_specimen
82
erpos
1
prpos
1
Final_histology_more_detail
IDC
BBD_Category
NO_INPUT
bxtosx_gt28days
0
dist_nipple_gt2
1
agecat_1
55-64
agecat_2
56_
simple_id
8
histology_cat
InvCa
t2specimen_cat
61-90min
bmi_cat
25-29.9
her2pos
0
any_children
1
enrolltime
1
histology_cat2
InvCa
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated