sb22ST_r1238
022_SAL
collection_date
2014-07-31
env_biome
Skin Tissue
env_feature
Skin Tissue
env_material
Skin Tissue
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
2
Application_Type
NO_INPUT
Cluster_Gen__Date
6/26/2015
Custom_Index
NO_INPUT
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AG075
Multiplexing_Indexin
NO_INPUT
PCR_Gel_Band_size
NO_INPUT
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150626_M00710_0037_000000000-AG075
Sample_Concentration
6.036
Sample_Volume
NO_INPUT
Sample_Vol__Units
NO_INPUT
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
NO_INPUT
Sequencing_Run_Nbr
37
Sequencing_Run_Type
NO_INPUT
Pool_Name
Hieken10_060815
batch
3
Age
65
BMI
42.7
Body_weight_kg
104
Weight_category
2
Smoker_status
Never_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
0
Parity
0
Year_of_last_parity
NO_INPUT
Breastfed_ever
NO_INPUT
How_long_breastfed_cumulative
NO_INPUT
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
DCIS
If_other_please_specify_2
NO_INPUT
Date_of_surgery
7/31/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
2000
abx_time
8_01_00
incision_time
8_26_00
closure_time
10_49_00
specimen_time
10_49_00
time_from_incision_to_specimen
143
Distance_of_specimen_from_nipple
3
dfn_cat
__2_but_within_5
Breast_operation
WLE
Axillary_operation
None
Total_number_of_lymph_nodes_remo
NO_INPUT
Number_of_positive_lymph_nodes
NO_INPUT
final_dx
Malignant
Final_pathology_histology_
DCIS
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
Tis
Pathologic_N_stage
N0
Pathologic_M_stage
M0
Pathologic_TNM_stage
0
ER_status
_75_
PR_status
_75_
HER2
N/A
HER2_FISH
Not_Performed
Invasive_Grade
NO_INPUT
Grade_for_DCIS
High
Age_menopause
NO_INPUT
years_since_menopause
NO_INPUT
days_since_last_period
NO_INPUT
days_biop_to_surg
44
min_abx_to_specimen
168
erpos
1
prpos
1
Final_histology_more_detail
DCIS
BBD_Category
NO_INPUT
bxtosx_gt28days
1
dist_nipple_gt2
1
agecat_1
65-74
agecat_2
56_
simple_id
22
histology_cat
DCIS
t2specimen_cat
_120min
bmi_cat
30_
her2pos
NO_INPUT
any_children
0
enrolltime
3
histology_cat2
DCIS
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated