s01BS1
001_LSK
collection_date
2014-04-04
env_biome
Buccal Cells
env_feature
Buccal Cells
env_material
Buccal Cells
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
7/22/2014
Custom_Index
CAGTGATCCTAG
Data_Collection_Vers
MCS_v2.4.1.3
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-A9MD5
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.3.32
Run_Folder
140722_M00710_0163_000000000-A9MD5
Sample_Concentration
3.69
Sample_Volume
100
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
163
Sequencing_Run_Type
MiSeq_PEIn_300_Run
Pool_Name
NO_INPUT
batch
1
Age
57
BMI
25
Body_weight_kg
61.5
Weight_category
1
Smoker_status
Never_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
2
Parity
2
Year_of_last_parity
NO_INPUT
Breastfed_ever
Yes
How_long_breastfed_cumulative
_1_year
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
ADH
If_other_please_specify_2
NO_INPUT
Date_of_surgery
4/7/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Clindamycin
Preop_antibiotic_dose_mg
600
abx_time
8_46_00
incision_time
9_19_00
closure_time
10_44_00
specimen_time
10_13_00
time_from_incision_to_specimen
54
Distance_of_specimen_from_nipple
7
dfn_cat
__5_cm
Breast_operation
Excisional_biopsy
Axillary_operation
None
Total_number_of_lymph_nodes_remo
NO_INPUT
Number_of_positive_lymph_nodes
NO_INPUT
final_dx
Benign
Final_pathology_histology_
ADH
Secondary_Pathology_associated_
NO_INPUT
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
NO_INPUT
Pathologic_N_stage
NO_INPUT
Pathologic_M_stage
NO_INPUT
Pathologic_TNM_stage
NO_INPUT
ER_status
NO_INPUT
PR_status
NO_INPUT
HER2
NO_INPUT
HER2_FISH
NO_INPUT
Invasive_Grade
NO_INPUT
Grade_for_DCIS
NO_INPUT
Age_menopause
56
years_since_menopause
1
days_since_last_period
NO_INPUT
days_biop_to_surg
52
min_abx_to_specimen
87
erpos
NO_INPUT
prpos
NO_INPUT
Final_histology_more_detail
ADH
BBD_Category
Atypia
bxtosx_gt28days
1
dist_nipple_gt2
1
agecat_1
55-64
agecat_2
56_
simple_id
1
histology_cat
Atypia
t2specimen_cat
31-60min
bmi_cat
25-29.9
her2pos
NO_INPUT
any_children
1
enrolltime
1
histology_cat2
Benign
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated