sb15ST_r1232
015_NJL
collection_date
2014-05-30
env_biome
Skin Tissue
env_feature
Skin Tissue
env_material
Skin Tissue
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
2
Application_Type
NO_INPUT
Cluster_Gen__Date
6/26/2015
Custom_Index
NO_INPUT
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AG075
Multiplexing_Indexin
NO_INPUT
PCR_Gel_Band_size
NO_INPUT
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150626_M00710_0037_000000000-AG075
Sample_Concentration
6.036
Sample_Volume
NO_INPUT
Sample_Vol__Units
NO_INPUT
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
NO_INPUT
Sequencing_Run_Nbr
37
Sequencing_Run_Type
NO_INPUT
Pool_Name
Hieken10_060815
batch
3
Age
40
BMI
31
Body_weight_kg
75.5
Weight_category
1
Smoker_status
Never_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
No
ASA_class
1
Prior_ipsilateral_breast_surgery
No
Gravidity
3
Parity
3
Year_of_last_parity
NO_INPUT
Breastfed_ever
NO_INPUT
How_long_breastfed_cumulative
NO_INPUT
Menopausal_status
Pre-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
Papillary_lesion_w/o_atypia
If_other_please_specify_2
NO_INPUT
Date_of_surgery
5/30/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
1000
abx_time
8_12_00
incision_time
8_35_00
closure_time
9_43_00
specimen_time
9_21_00
time_from_incision_to_specimen
46
Distance_of_specimen_from_nipple
5
dfn_cat
__2_but_within_5
Breast_operation
Excisional_biopsy
Axillary_operation
None
Total_number_of_lymph_nodes_remo
NO_INPUT
Number_of_positive_lymph_nodes
NO_INPUT
final_dx
Benign
Final_pathology_histology_
Papillary_lesion_w/o_atypia
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
NO_INPUT
Pathologic_N_stage
NO_INPUT
Pathologic_M_stage
NO_INPUT
Pathologic_TNM_stage
NO_INPUT
ER_status
NO_INPUT
PR_status
NO_INPUT
HER2
NO_INPUT
HER2_FISH
NO_INPUT
Invasive_Grade
NO_INPUT
Grade_for_DCIS
NO_INPUT
Age_menopause
NO_INPUT
years_since_menopause
NO_INPUT
days_since_last_period
NO_INPUT
days_biop_to_surg
23
min_abx_to_specimen
69
erpos
NO_INPUT
prpos
NO_INPUT
Final_histology_more_detail
Papillary_lesion_w/o_atypia
BBD_Category
PD
bxtosx_gt28days
0
dist_nipple_gt2
1
agecat_1
33-54
agecat_2
33-44
simple_id
15
histology_cat
BBD_non_atypia
t2specimen_cat
31-60min
bmi_cat
30_
her2pos
NO_INPUT
any_children
1
enrolltime
2
histology_cat2
Benign
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated