s29BS1_r1278
029_IKP
collection_date
2014-08-25
env_biome
Buccal Cells
env_feature
Buccal Cells
env_material
Buccal Cells
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
7/2/2015
Custom_Index
AAGCCAGATAGA
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AFV88
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150702_M00710_0038_000000000-AFV88
Sample_Concentration
0.9
Sample_Volume
50
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
38
Sequencing_Run_Type
MiSeq_PE_300_Run
Pool_Name
Hieken1_060815
batch
3
Age
66
BMI
20.5
Body_weight_kg
61.1
Weight_category
1
Smoker_status
Former_smoker
Or_if_exact_date_unknown_choose
_6_weeks
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
3
Parity
3
Year_of_last_parity
200
Breastfed_ever
No
How_long_breastfed_cumulative
NO_INPUT
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
IDC
If_other_please_specify_2
NO_INPUT
Date_of_surgery
8/29/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
1000
abx_time
12_56_00
incision_time
13_09_00
closure_time
15_46_00
specimen_time
14_30_00
time_from_incision_to_specimen
81
Distance_of_specimen_from_nipple
0.5
dfn_cat
within_1_cm
Breast_operation
WLE
Axillary_operation
SLNB_only
Total_number_of_lymph_nodes_remo
4
Number_of_positive_lymph_nodes
0
final_dx
Malignant
Final_pathology_histology_
IDC
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
T1c
Pathologic_N_stage
N0
Pathologic_M_stage
M0
Pathologic_TNM_stage
IA
ER_status
_75_
PR_status
51-75_
HER2
2_
HER2_FISH
Amplified
Invasive_Grade
II
Grade_for_DCIS
NO_INPUT
Age_menopause
51
years_since_menopause
15
days_since_last_period
NO_INPUT
days_biop_to_surg
30
min_abx_to_specimen
94
erpos
1
prpos
1
Final_histology_more_detail
IDC
BBD_Category
NO_INPUT
bxtosx_gt28days
1
dist_nipple_gt2
0
agecat_1
65-74
agecat_2
56_
simple_id
29
histology_cat
InvCa
t2specimen_cat
61-90min
bmi_cat
18.5-24.9
her2pos
1
any_children
1
enrolltime
3
histology_cat2
InvCa
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated