s16SS_r1302
016_CMM
collection_date
2014-06-13
env_biome
Skin Swab
env_feature
Skin Swab
env_material
Skin Swab
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
2
Application_Type
NO_INPUT
Cluster_Gen__Date
6/26/2015
Custom_Index
NO_INPUT
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AG075
Multiplexing_Indexin
NO_INPUT
PCR_Gel_Band_size
NO_INPUT
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150626_M00710_0037_000000000-AG075
Sample_Concentration
6.036
Sample_Volume
NO_INPUT
Sample_Vol__Units
NO_INPUT
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
NO_INPUT
Sequencing_Run_Nbr
37
Sequencing_Run_Type
NO_INPUT
Pool_Name
Hieken10_060815
batch
3
Age
44
BMI
21.9
Body_weight_kg
61.8
Weight_category
1
Smoker_status
Former_smoker
Or_if_exact_date_unknown_choose
_6_weeks
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
2
Parity
2
Year_of_last_parity
NO_INPUT
Breastfed_ever
Yes
How_long_breastfed_cumulative
One_year_or_more
Menopausal_status
Pre-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
IDC
If_other_please_specify_2
NO_INPUT
Date_of_surgery
6/13/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
1000
abx_time
14_32_00
incision_time
14_58_00
closure_time
16_52_00
specimen_time
16_24_00
time_from_incision_to_specimen
86
Distance_of_specimen_from_nipple
3
dfn_cat
__2_but_within_5
Breast_operation
WLE
Axillary_operation
SLNB_only
Total_number_of_lymph_nodes_remo
3
Number_of_positive_lymph_nodes
1
final_dx
Malignant
Final_pathology_histology_
IDC
Secondary_Pathology_associated_
DCIS
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
T2
Pathologic_N_stage
N1mic
Pathologic_M_stage
M0
Pathologic_TNM_stage
IIA
ER_status
_75_
PR_status
_75_
HER2
1_
HER2_FISH
Not_Performed
Invasive_Grade
II
Grade_for_DCIS
NO_INPUT
Age_menopause
NO_INPUT
years_since_menopause
NO_INPUT
days_since_last_period
-46
days_biop_to_surg
24
min_abx_to_specimen
112
erpos
1
prpos
1
Final_histology_more_detail
IDC
BBD_Category
NO_INPUT
bxtosx_gt28days
0
dist_nipple_gt2
1
agecat_1
33-54
agecat_2
33-44
simple_id
16
histology_cat
InvCa
t2specimen_cat
61-90min
bmi_cat
18.5-24.9
her2pos
0
any_children
1
enrolltime
2
histology_cat2
InvCa
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated