sb04BT
004_CLN
collection_date
2014-04-17
env_biome
Breast
env_feature
Breast
env_material
Breast
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
7/22/2014
Custom_Index
TGCAGAGCTCAG
Data_Collection_Vers
MCS_v2.4.1.3
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-A9MD5
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.3.32
Run_Folder
140722_M00710_0163_000000000-A9MD5
Sample_Concentration
3.69
Sample_Volume
100
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
163
Sequencing_Run_Type
MiSeq_PEIn_300_Run
Pool_Name
NO_INPUT
batch
1
Age
60
BMI
34.7
Body_weight_kg
85
Weight_category
2
Smoker_status
Former_smoker
Or_if_exact_date_unknown_choose
_6_weeks
Diabetes_mellitus
No
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
2
Parity
2
Year_of_last_parity
NO_INPUT
Breastfed_ever
Yes
How_long_breastfed_cumulative
One_year_or_more
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
2nd_degree_or_greater_relative
Preoperative_diagnosis
DCIS
If_other_please_specify_2
NO_INPUT
Date_of_surgery
4/17/2014
Preoperative_Hibiclens_wash_doc
No
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
2000
abx_time
11_20_00
incision_time
11_45_00
closure_time
13_57_00
specimen_time
12_20_00
time_from_incision_to_specimen
35
Distance_of_specimen_from_nipple
6
dfn_cat
__5_cm
Breast_operation
WLE
Axillary_operation
None
Total_number_of_lymph_nodes_remo
NO_INPUT
Number_of_positive_lymph_nodes
NO_INPUT
final_dx
Malignant
Final_pathology_histology_
DCIS
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
Tis
Pathologic_N_stage
N0
Pathologic_M_stage
M0
Pathologic_TNM_stage
0
ER_status
_75_
PR_status
_75_
HER2
N/A
HER2_FISH
Not_Performed
Invasive_Grade
NO_INPUT
Grade_for_DCIS
Low
Age_menopause
49
years_since_menopause
11
days_since_last_period
NO_INPUT
days_biop_to_surg
36
min_abx_to_specimen
60
erpos
1
prpos
1
Final_histology_more_detail
DCIS
BBD_Category
NO_INPUT
bxtosx_gt28days
1
dist_nipple_gt2
1
agecat_1
55-64
agecat_2
56_
simple_id
4
histology_cat
DCIS
t2specimen_cat
31-60min
bmi_cat
30_
her2pos
NO_INPUT
any_children
1
enrolltime
1
histology_cat2
DCIS
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated