sb14BT_r1195
014_RLS
collection_date
2014-07-27
env_biome
Breast
env_feature
Breast
env_material
Breast
geo_loc_name
not applicable
host
Homo sapiens
lat_lon
not applicable
Data_Set
1
Application_Type
16sAMP
Cluster_Gen__Date
7/2/2015
Custom_Index
TCCAGCTGACAA
Data_Collection_Vers
MCS_v2.5.0.4
Flow_Cell_Conc___pM_
6
Flow_Cell_Serial_Num
000000000-AFV88
Multiplexing_Indexin
Y
PCR_Gel_Band_size
685
Pipeline_Ver
MiSeq_Reporter_v2.5.1.3
Run_Folder
150702_M00710_0038_000000000-AFV88
Sample_Concentration
0.9
Sample_Volume
50
Sample_Vol__Units
uL
Seq_Kit_Version
MiSeq_v3
Sequencing_Platform
MiSeq
Sequencing_Run_Nbr
38
Sequencing_Run_Type
MiSeq_PE_300_Run
Pool_Name
Hieken1_060815
batch
3
Age
59
BMI
40.3
Body_weight_kg
125
Weight_category
3
Smoker_status
Former_smoker
Or_if_exact_date_unknown_choose
NO_INPUT
Diabetes_mellitus
Yes_NIDDM
ASA_class
2
Prior_ipsilateral_breast_surgery
No
Gravidity
3
Parity
1
Year_of_last_parity
NO_INPUT
Breastfed_ever
No
How_long_breastfed_cumulative
NO_INPUT
Menopausal_status
Post-menopause
Neoadjuvant_therapy
None
Genetic_testing
Not_tested
Family_history_of_breast_cancer
None
Preoperative_diagnosis
Flat_epithelial_atypia
If_other_please_specify_2
NO_INPUT
Date_of_surgery
6/27/2014
Preoperative_Hibiclens_wash_doc
Yes
Preoperative_skin_prep
Chloraprep
Preoperative_antibiotic_administ
Yes
Type_of_preop_antibiotic
Ancef
Preop_antibiotic_dose_mg
3000
abx_time
8_36_00
incision_time
8_40_00
closure_time
9_48_00
specimen_time
9_32_00
time_from_incision_to_specimen
52
Distance_of_specimen_from_nipple
9
dfn_cat
__5_cm
Breast_operation
Excisional_biopsy
Axillary_operation
None
Total_number_of_lymph_nodes_remo
NO_INPUT
Number_of_positive_lymph_nodes
NO_INPUT
final_dx
Benign
Final_pathology_histology_
Flat_epithelial_atypia
Secondary_Pathology_associated_
None
If_other_secondary_pathology_pl
NO_INPUT
Pathologic_T_stage
NO_INPUT
Pathologic_N_stage
NO_INPUT
Pathologic_M_stage
NO_INPUT
Pathologic_TNM_stage
NO_INPUT
ER_status
NO_INPUT
PR_status
NO_INPUT
HER2
NO_INPUT
HER2_FISH
NO_INPUT
Invasive_Grade
NO_INPUT
Grade_for_DCIS
NO_INPUT
Age_menopause
55
years_since_menopause
4
days_since_last_period
NO_INPUT
days_biop_to_surg
64
min_abx_to_specimen
56
erpos
NO_INPUT
prpos
NO_INPUT
Final_histology_more_detail
Flat_epithelial_atypia
BBD_Category
PD
bxtosx_gt28days
1
dist_nipple_gt2
1
agecat_1
55-64
agecat_2
56_
simple_id
14
histology_cat
BBD_non_atypia
t2specimen_cat
31-60min
bmi_cat
30_
her2pos
NO_INPUT
any_children
1
enrolltime
2
histology_cat2
Benign
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated