collection_date
2016-10-19
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1028
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
18.999199
host_height
74.5789171
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-10-12T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
30293
FinalReads_ASVpipeline
10611
sampling_induced_expectorated
expectorated
barcode
BSP0029
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
C
WRrepeats_WP
NA
WRrepeats_BP
C
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
388607.53
templateDNA_16SqPCR_Cq
19.46095346
templateDNA_16SqPCR
0.275640865
well
G07
plate_number
P1
barcode_806R
806rcbc62
index_sequence
GAATCTTCGAGC
DOB
1998-02-25T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2006-06-17T00:00:00
datehiv
2006-06-05T00:00:00
ageyart
8.31
duryart
10.34
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.9498072
weight
51.6
f24mrcscore
1
FEV1_baseline
2.47
FEVpcpred
74.5789171
FVC
NA
FVCZ
NA
FVCpcpred
NA
FEV1FVC
NA
FEV1FVCZ
NA
cd4
133
vload
163000
zwauk
-2.2401984
zhauk
-1.7871091
zbmiuk
-1.1060326
vllog
5.2121878
endtreatdate
['2017-09-20T00:00:00', '2017-09-20T00:00:00']
sp05time
10:13:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-07T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-07T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated