collection_date
2018-10-17
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1079
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
24.386526
host_height
60.65572763
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-10-17T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
38049
FinalReads_ASVpipeline
13910
sampling_induced_expectorated
expectorated
barcode
BSP0546
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
R
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2609600.47
templateDNA_16SqPCR_Cq
16.63
templateDNA_16SqPCR
1.851
well
G01
plate_number
P1
barcode_806R
806rcbc14
index_sequence
TGAGTCACTGGT
DOB
2001-04-15T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2009-06-16T00:00:00
datehiv
2007-10-12T00:00:00
ageyart
8.17
duryart
7.96
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.947536319
weight
64
f24mrcscore
1
FEV1_baseline
1.720000029
FEVpcpred
60.65572763
FVC
2.036250114
FVCZ
-2.79620095
FVCpcpred
64.14513135
FEV1FVC
0.84468996
FEV1FVCZ
-0.873690992
cd4
NA
vload
NA
zwauk
0.76071417
zhauk
-0.252886
zbmiuk
1.0722307
vllog
NA
endtreatdate
['NA', '2018-05-02T00:00:00']
sp05time
08:35:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-17T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-17T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated