collection_date
2019-05-06
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Malawi: Blantyre
host
Homo sapiens
lat_lon
15.77 S 35.02 E
host_subject_id
B3101
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.8
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
not applicable
host_height
not applicable
samp_size
['not applicable', '']
study_complt_stat
study ended
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
not applicable
run_processing_batch
R1
sample_type
sequencing_control
RawReads_ASVpipeline
42557
FinalReads_ASVpipeline
18389
sampling_induced_expectorated
expectorated
barcode
BYD13JT3
sequencing_controls
yes
sequencing_control_details
WRrepeat
WRrepeats
AAV
WRrepeats_WP
AAV
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
40248.01
templateDNA_16SqPCR_Cq
22.70644048
templateDNA_16SqPCR
0.028548076
well
H12
plate_number
P4
barcode_806R
806rcbc7
index_sequence
CTAACCTCCGCT
DOB
2001-06-20T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2018-06
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2015-06-15T00:00:00
datehiv
2015-06-15T00:00:00
ageyart
13.98
duryart
2.97
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
not applicable
weight
not applicable
f24mrcscore
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
cd4
not applicable
vload
not applicable
zwauk
not applicable
zhauk
not applicable
zbmiuk
not applicable
vllog
not applicable
endtreatdate
['not applicable', '2019-04-30T00:00:00']
sp05time
not applicable
all_3
not applicable
visit012
not applicable
visit1218
not applicable
visit018
not applicable
only2visits
not applicable
one_visit
not applicable
endfollowup
2019-05-06T00:00:00
dow
NA
dod
NA
lastvisit
12 mths
visittotno
5
lastvisitdate
2019-05-06T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
not applicable
hospitalised12m
not applicable
reason_hospi
not applicable
antibiotic12m
not applicable
any3_reasons
not applicable
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated