collection_date
2017-11-15
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1003
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
14.118469
host_height
63.79356898
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2017-11-15T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
32831
FinalReads_ASVpipeline
11425
sampling_induced_expectorated
expectorated
barcode
BSP0237
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
194227.4
templateDNA_16SqPCR_Cq
20.46708147
templateDNA_16SqPCR
0.137766271
well
H09
plate_number
P1
barcode_806R
806rcbc79
index_sequence
GGAAACCACCAC
DOB
2001-07-17T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2016-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2008-08-07T00:00:00
datehiv
2008-06-15T00:00:00
ageyart
7.06
duryart
7.89
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.669782344
weight
25.2
f24mrcscore
1
FEV1_baseline
1.25999999
FEVpcpred
63.79356898
FVC
1.741875052
FVCZ
-1.562520484
FVCpcpred
80.61427527
FEV1FVC
0.723358423
FEV1FVCZ
-2.459777325
cd4
NA
vload
NA
zwauk
-6.8874583
zhauk
-5.475811
zbmiuk
-4.0631227
vllog
NA
endtreatdate
['NA', '2017-05-31T00:00:00']
sp05time
10:47:00
all_3
no
visit012
no
visit1218
yes
visit018
no
only2visits
yes
one_visit
no
endfollowup
2017-11-15T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2017-11-15T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated