collection_date
2016-12-02
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1038
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
17.049513
host_height
52.96980637
samp_size
['NA', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-12-01T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40104
FinalReads_ASVpipeline
14787
sampling_induced_expectorated
expectorated
barcode
BSP0040
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
D
WRrepeats_WP
NA
WRrepeats_BP
D
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
456829.24
templateDNA_16SqPCR_Cq
19.05775826
templateDNA_16SqPCR
0.324030798
well
D03
plate_number
P3
barcode_806R
806rcbc220
index_sequence
CATTTGGACGAC
DOB
2000-11-15T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-12
attendschool
yes
rs15antibty
NA
rs14antib
NA
dateart
2009-01-27T00:00:00
datehiv
2008-12-12T00:00:00
ageyart
8.2
duryart
7.85
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-3.4245245
weight
44.8
f24mrcscore
2
FEV1_baseline
1.59
FEVpcpred
52.96980637
FVC
2.144999981
FVCZ
-3.008820798
FVCpcpred
62.89744375
FEV1FVC
0.741258763
FEV1FVCZ
-1.994340824
cd4
248
vload
16800
zwauk
-1.9860432
zhauk
-1.5083362
zbmiuk
-1.5325589
vllog
4.2253094
endtreatdate
['2017-11-03T00:00:00', '2017-11-03T00:00:00']
sp05time
NA
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-04-24T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-04-24T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated