collection_date
2018-03-29
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1035
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.8
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
15.5278
host_height
43.0729805
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-03-29T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
46400
FinalReads_ASVpipeline
7978
sampling_induced_expectorated
expectorated
barcode
BSP0364
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
16043.9
templateDNA_16SqPCR_Cq
24.15
templateDNA_16SqPCR
0.01138
well
G01
plate_number
P2
barcode_806R
806rcbc110
index_sequence
AATGGAGCATGA
DOB
2001-05-11T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-11
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2010-06-08T00:00:00
datehiv
2008-10-13T00:00:00
ageyart
9.08
duryart
6.44
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-4.147647133
weight
40
f24mrcscore
2
FEV1_baseline
1.299999952
FEVpcpred
43.0729805
FVC
1.751250029
FVCZ
-3.973216765
FVCpcpred
51.17167668
FEV1FVC
0.74232687
FEV1FVCZ
-1.985501749
cd4
NA
vload
NA
zwauk
-3.5384152
zhauk
-2.0991631
zbmiuk
-2.9384894
vllog
NA
endtreatdate
['NA', '2017-10-16T00:00:00']
sp05time
10:30:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-29T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-29T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated