collection_date
2017-04-06
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1063
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
14.455246
host_height
65.9442836
samp_size
['2.3', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-03-30T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
33179
FinalReads_ASVpipeline
10866
sampling_induced_expectorated
expectorated
barcode
BSP0070
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
686588.56
templateDNA_16SqPCR_Cq
18.6
templateDNA_16SqPCR
0.487
well
B01
plate_number
P4
barcode_806R
806rcbc298
index_sequence
AACGCCGAATGC
DOB
2000-11-17T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-04
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2011-10-24T00:00:00
datehiv
2009-06-15T00:00:00
ageyart
10.93
duryart
5.45
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.516619
weight
45.8
f24mrcscore
1
FEV1_baseline
2.46
FEVpcpred
65.9442836
FVC
2.538749933
FVCZ
-3.340244056
FVCpcpred
58.85350096
FEV1FVC
0.968980838
FEV1FVCZ
1.789631323
cd4
694
vload
13400
zwauk
-2.0849261
zhauk
0.46394399
zbmiuk
-3.7382555
vllog
4.1271048
endtreatdate
['2018-03-08T00:00:00', '2018-03-08T00:00:00']
sp05time
11:50:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-23T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-23T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated