collection_date
2018-01-10
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1045
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.8
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
21.930487
host_height
65.97387315
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-01-10T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
39548
FinalReads_ASVpipeline
15178
sampling_induced_expectorated
expectorated
barcode
BSP0262
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
38764.1
templateDNA_16SqPCR_Cq
22.7617657
templateDNA_16SqPCR
0.027495531
well
B11
plate_number
P4
barcode_806R
806rcbc378
index_sequence
GTGTTGCAGCAT
DOB
1999-02-20T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-06-15T00:00:00
datehiv
2011-06-15T00:00:00
ageyart
12.31
duryart
5.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.560239204
weight
43.6
f24mrcscore
1
FEV1_baseline
1.399999976
FEVpcpred
65.97387315
FVC
1.600000024
FVCZ
-2.445010705
FVCpcpred
68.32134718
FEV1FVC
0.874999972
FEV1FVCZ
-0.532681686
cd4
735
vload
0
zwauk
-2.1823223
zhauk
-3.7470198
zbmiuk
0.17334028
vllog
0
endtreatdate
['NA', '2018-01-10T00:00:00']
sp05time
08:51:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-06-06T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-06-06T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated