collection_date
2017-12-20
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1006
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
9.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
13.945799
host_height
81.28162653
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2017-12-20T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
41620
FinalReads_ASVpipeline
10609
sampling_induced_expectorated
expectorated
barcode
BSP0257
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
742573.04
templateDNA_16SqPCR_Cq
18.52154217
templateDNA_16SqPCR
0.526710013
well
C08
plate_number
P1
barcode_806R
806rcbc66
index_sequence
TTCCTAGGTGAG
DOB
2008-08-03T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2016-08
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2009-08-28T00:00:00
datehiv
2009-03-18T00:00:00
ageyart
1.07
duryart
6.95
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.423215949
weight
22
f24mrcscore
1
FEV1_baseline
1.059999943
FEVpcpred
81.28162653
FVC
1.220000029
FVCZ
-1.231834796
FVCpcpred
84.34305546
FEV1FVC
0.868852392
FEV1FVCZ
-0.637541132
cd4
NA
vload
NA
zwauk
-2.0271688
zhauk
-1.546201
zbmiuk
-1.5803158
vllog
NA
endtreatdate
['NA', '2017-07-12T00:00:00']
sp05time
08:50:00
all_3
no
visit012
no
visit1218
yes
visit018
no
only2visits
yes
one_visit
no
endfollowup
2017-12-20T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2017-12-20T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated