collection_date
2018-04-24
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1038
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.4
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.043161
host_height
63.25299916
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-04-24T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45215
FinalReads_ASVpipeline
15101
sampling_induced_expectorated
expectorated
barcode
BSP0387
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
294828.91
templateDNA_16SqPCR_Cq
19.71220827
templateDNA_16SqPCR
0.209123322
well
D05
plate_number
P3
barcode_806R
806rcbc236
index_sequence
AGATAGGACAGG
DOB
2000-11-15T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-12
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2009-01-27T00:00:00
datehiv
2008-12-12T00:00:00
ageyart
8.2
duryart
7.85
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.749591284
weight
49.6
f24mrcscore
1
FEV1_baseline
2.079999924
FEVpcpred
63.25299916
FVC
3.337500095
FVCZ
-0.896535904
FVCpcpred
88.83786878
FEV1FVC
0.623220933
FEV1FVCZ
-3.206260205
cd4
NA
vload
NA
zwauk
-2.1161437
zhauk
-1.5218813
zbmiuk
-1.3385847
vllog
NA
endtreatdate
['NA', '2017-11-03T00:00:00']
sp05time
08:50:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-04-24T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-04-24T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated