collection_date
2016-11-14
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1035
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
15.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
15.101076
host_height
45.92973983
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-11-08T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
64715
FinalReads_ASVpipeline
22333
sampling_induced_expectorated
expectorated
barcode
BSP0037
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
B
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
22230.78
templateDNA_16SqPCR_Cq
23.68169579
templateDNA_16SqPCR
0.015768378
well
F11
plate_number
P2
barcode_806R
806rcbc189
index_sequence
CCAAGTCTTACA
DOB
2001-05-11T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-11
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2010-06-08T00:00:00
datehiv
2008-10-13T00:00:00
ageyart
9.08
duryart
6.44
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-3.8937263
weight
36
f24mrcscore
1
FEV1_baseline
1.21
FEVpcpred
45.92973983
FVC
1.452499986
FVCZ
-4.168799929
FVCpcpred
48.9057465
FEV1FVC
0.833046506
FEV1FVCZ
-0.828994598
cd4
276
vload
74000
zwauk
-2.9986949
zhauk
-2.1713679
zbmiuk
-2.7932572
vllog
4.8692317
endtreatdate
['2017-10-16T00:00:00', '2017-10-16T00:00:00']
sp05time
10:14:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-29T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-29T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated