collection_date
2017-08-11
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1011
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
20.80703
host_height
57.82784817
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-08-11T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
26030
FinalReads_ASVpipeline
5685
sampling_induced_expectorated
expectorated
barcode
BSP0142
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
106667.37
templateDNA_16SqPCR_Cq
21.32842545
templateDNA_16SqPCR
0.075659587
well
F08
plate_number
P2
barcode_806R
806rcbc165
index_sequence
TGGCATACGGCA
DOB
2001-03-23T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2016-09
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2008-06-15T00:00:00
datehiv
2008-06-15T00:00:00
ageyart
7.23
duryart
8.24
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-3.097558072
weight
53
f24mrcscore
1
FEV1_baseline
1.7
FEVpcpred
57.82784817
FVC
1.716249943
FVCZ
-3.943133353
FVCpcpred
51.55823483
FEV1FVC
0.990531743
FEV1FVCZ
1.876022339
cd4
909
vload
39
zwauk
-1.0596255
zhauk
-2.0137644
zbmiuk
0.26014379
vllog
1.5910646
endtreatdate
['NA', '2017-08-11T00:00:00']
sp05time
11:01:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-01-30T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-01-30T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated