collection_date
2018-05-21
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1086
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
10.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
16.491028
host_height
80.49855695
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-05-21T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
27584
FinalReads_ASVpipeline
8627
sampling_induced_expectorated
expectorated
barcode
BSP0401
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1632350.94
templateDNA_16SqPCR_Cq
17.37888018
templateDNA_16SqPCR
1.157833016
well
F05
plate_number
P1
barcode_806R
806rcbc45
index_sequence
GTCTAATTCCGA
DOB
2007-10-09T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2015-06-08T00:00:00
datehiv
2014-04-28T00:00:00
ageyart
7.66
duryart
2.03
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.54959984
weight
32
f24mrcscore
1
FEV1_baseline
1.389999986
FEVpcpred
80.49855695
FVC
1.796249986
FVCZ
-0.776680195
FVCpcpred
90.3211073
FEV1FVC
0.773834375
FEV1FVCZ
-1.545955592
cd4
878
vload
597
zwauk
-0.2489071
zhauk
-0.34420991
zbmiuk
-0.11559197
vllog
2.7759743
endtreatdate
['NA', '2018-05-21T00:00:00']
sp05time
09:05:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-05T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-05T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated