collection_date
2017-06-29
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1090
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.9
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE & AMOXICILLIN
host_hiv_stat
yes
host_body_mass_index
26.423262
host_height
82.87827289
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-06-22T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
36672
FinalReads_ASVpipeline
12531
sampling_induced_expectorated
expectorated
barcode
BSP0110
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
18017.14
templateDNA_16SqPCR_Cq
23.89013962
templateDNA_16SqPCR
0.012779631
well
C10
plate_number
P4
barcode_806R
806rcbc371
index_sequence
TTGGGCGTGAAC
DOB
1998-07-10T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE & AMOXICILLIN
rs14antib
yes
dateart
2012-09-09T00:00:00
datehiv
2012-05-15T00:00:00
ageyart
14.17
duryart
4.8
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.3085567
weight
63.4
f24mrcscore
2
FEV1_baseline
2.15
FEVpcpred
82.87827289
FVC
2.386250019
FVCZ
-1.352025251
FVCpcpred
82.21554716
FEV1FVC
0.900995318
FEV1FVCZ
0.049294582
cd4
417
vload
495
zwauk
0.62368584
zhauk
-1.4454647
zbmiuk
1.4626176
vllog
2.6946051
endtreatdate
['2018-05-31T00:00:00', '2018-05-31T00:00:00']
sp05time
09:10:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-15T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-15T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated