collection_date
2017-02-20
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1054
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.1
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
23.604361
host_height
78.06069144
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-02-02T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
41818
FinalReads_ASVpipeline
15097
sampling_induced_expectorated
expectorated
barcode
BSP0057
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2299036.32
templateDNA_16SqPCR_Cq
16.88205619
templateDNA_16SqPCR
1.630715614
well
A04
plate_number
P1
barcode_806R
806rcbc32
index_sequence
CAGTGCATATGC
DOB
1998-12-16T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-02
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2009-08-28T00:00:00
datehiv
2009-08-01T00:00:00
ageyart
10.7
duryart
7.48
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.6708758
weight
55.4
f24mrcscore
2
FEV1_baseline
1.97
FEVpcpred
78.06069144
FVC
2.233124971
FVCZ
-1.568750824
FVCpcpred
79.48620297
FEV1FVC
0.882171869
FEV1FVCZ
-0.336180729
cd4
19
vload
36400
zwauk
-0.28183669
zhauk
-1.7197642
zbmiuk
0.78369415
vllog
4.5611014
endtreatdate
['2018-01-22T00:00:00', '2018-01-22T00:00:00']
sp05time
11:07:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-07-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-07-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated