collection_date
2017-01-18
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1045
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.9
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
16.819008
host_height
76.78705028
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-01-12T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
42960
FinalReads_ASVpipeline
17108
sampling_induced_expectorated
expectorated
barcode
BSP0048
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
29644.52
templateDNA_16SqPCR_Cq
23.1567814
templateDNA_16SqPCR
0.021026974
well
B10
plate_number
P4
barcode_806R
806rcbc370
index_sequence
GAAAGGACAGGT
DOB
1999-02-20T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
NA
rs14antib
no
dateart
2011-06-15T00:00:00
datehiv
2011-06-15T00:00:00
ageyart
12.31
duryart
5.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.7661328
weight
31.2
f24mrcscore
1
FEV1_baseline
1.51
FEVpcpred
76.78705028
FVC
1.695624948
FVCZ
-1.621527699
FVCpcpred
78.83103671
FEV1FVC
0.890527114
FEV1FVCZ
-0.394978813
cd4
753
vload
127000
zwauk
-5.1584754
zhauk
-4.527144
zbmiuk
-2.0917742
vllog
5.1038036
endtreatdate
['2018-01-10T00:00:00', '2018-01-10T00:00:00']
sp05time
10:05:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-06-06T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-06-06T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated