collection_date
2017-03-24
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1060
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.4
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
25.329271
host_height
77.75807115
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-03-22T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
38309
FinalReads_ASVpipeline
16452
sampling_induced_expectorated
expectorated
barcode
BSP0064
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1610406.97
templateDNA_16SqPCR_Cq
17.17482678
templateDNA_16SqPCR
1.14
well
B12
plate_number
P3
barcode_806R
806rcbc290
index_sequence
TACGGTATGTCT
DOB
1999-10-02T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-03
attendschool
no
rs15antibty
NA
rs14antib
no
dateart
2010-05-20T00:00:00
datehiv
2001-06-15T00:00:00
ageyart
10.63
duryart
6.84
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.6941388
weight
64.6
f24mrcscore
1
FEV1_baseline
2.15
FEVpcpred
77.75807115
FVC
2.508749962
FVCZ
-1.439410554
FVCpcpred
81.1966727
FEV1FVC
0.857000549
FEV1FVCZ
-0.704476999
cd4
266
vload
107000
zwauk
0.82465208
zhauk
-0.63254297
zbmiuk
1.3202248
vllog
5.0293837
endtreatdate
['2018-02-23T00:00:00', '2018-02-23T00:00:00']
sp05time
09:15:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-10T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-10T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated