collection_date
2018-03-07
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1028
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.129969
host_height
79.1182261
samp_size
['1.5', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-03-07T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
36471
FinalReads_ASVpipeline
15360
sampling_induced_expectorated
expectorated
barcode
BSP0334
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
157218.61
templateDNA_16SqPCR_Cq
20.77375124
templateDNA_16SqPCR
0.111515785
well
G09
plate_number
P1
barcode_806R
806rcbc78
index_sequence
GTCATATCGTAC
DOB
1998-02-25T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2006-06-17T00:00:00
datehiv
2006-06-05T00:00:00
ageyart
8.31
duryart
10.34
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.62613624
weight
50.2
f24mrcscore
1
FEV1_baseline
2.710000038
FEVpcpred
79.1182261
FVC
2.829999924
FVCZ
-2.284124406
FVCpcpred
71.65326562
FEV1FVC
0.957597212
FEV1FVCZ
1.439980721
cd4
NA
vload
840000
zwauk
-2.8083551
zhauk
-1.5712149
zbmiuk
-1.9210403
vllog
5.9242792
endtreatdate
['NA', '2017-09-20T00:00:00']
sp05time
10:40:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-07T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-07T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated