collection_date
2018-05-14
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1082
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.5
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
19.530714
host_height
79.48344284
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-05-14T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
37293
FinalReads_ASVpipeline
13274
sampling_induced_expectorated
expectorated
barcode
BSP0395
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
29336.1
templateDNA_16SqPCR_Cq
23.16081213
templateDNA_16SqPCR
0.020808213
well
G04
plate_number
P3
barcode_806R
806rcbc231
index_sequence
TTCTGGGAACAC
DOB
1997-11-07T00:00:00
trial_arm
Azithromycin
adherence
Not Adherent
enrolmonth
2017-06
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2014-04-30T00:00:00
datehiv
2009-08-21T00:00:00
ageyart
16.48
duryart
3.12
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.560225902
weight
45.6
f24mrcscore
2
FEV1_baseline
2
FEVpcpred
79.48344284
FVC
2.351875067
FVCZ
-1.270669951
FVCpcpred
83.18862107
FEV1FVC
0.850385307
FEV1FVCZ
-0.693512092
cd4
693
vload
136
zwauk
-1.8551744
zhauk
-1.7972349
zbmiuk
-0.95988089
vllog
2.133539
endtreatdate
['NA', '2018-05-14T00:00:00']
sp05time
09:40:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-29T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-29T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated