collection_date
2018-04-24
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1076
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
12.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.202068
host_height
81.60211344
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-04-24T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
39066
FinalReads_ASVpipeline
9141
sampling_induced_expectorated
expectorated
barcode
BSP0388
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
447057.97
templateDNA_16SqPCR_Cq
19.24
templateDNA_16SqPCR
0.3171
well
G02
plate_number
P4
barcode_806R
806rcbc311
index_sequence
AGGCTTTCGTAG
DOB
2005-09-14T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
NA
datehiv
2007-06-15T00:00:00
ageyart
NA
duryart
NA
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.406386631
weight
43
f24mrcscore
2
FEV1_baseline
1.850000024
FEVpcpred
81.60211344
FVC
1.95875001
FVCZ
-1.809362513
FVCpcpred
77.1257006
FEV1FVC
0.944479905
FEV1FVCZ
0.976056469
cd4
619
vload
114
zwauk
-0.042411976
zhauk
0.071431503
zbmiuk
-0.13392442
vllog
2.0569048
endtreatdate
['NA', '2018-04-24T00:00:00']
sp05time
10:52:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-16T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-16T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated