collection_date
2017-12-14
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1044
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.3
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
20.166468
host_height
78.12801395
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-12-14T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
52107
FinalReads_ASVpipeline
17183
sampling_induced_expectorated
expectorated
barcode
BSP0253
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
765451.69
templateDNA_16SqPCR_Cq
18.36861087
templateDNA_16SqPCR
0.542937932
well
F05
plate_number
P4
barcode_806R
806rcbc334
index_sequence
CCATGGACACAG
DOB
1998-08-19T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2013-04-29T00:00:00
datehiv
2010-05-05T00:00:00
ageyart
14.69
duryart
3.71
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.663781951
weight
42.4
f24mrcscore
1
FEV1_baseline
1.76
FEVpcpred
78.12801395
FVC
2.094374895
FVCZ
-1.232375438
FVCpcpred
83.74015264
FEV1FVC
0.840346203
FEV1FVCZ
-0.981611716
cd4
285
vload
10800
zwauk
-2.4374776
zhauk
-3.0846505
zbmiuk
-0.55607986
vllog
4.0334239
endtreatdate
['NA', '2017-12-14T00:00:00']
sp05time
08:41:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-05-31T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-05-31T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated