collection_date
2018-03-09
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1029
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.4
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
21.285339
host_height
78.77967502
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-03-09T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
32969
FinalReads_ASVpipeline
10488
sampling_induced_expectorated
expectorated
barcode
BSP0339
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
3156986.58
templateDNA_16SqPCR_Cq
16.16885259
templateDNA_16SqPCR
2.239263149
well
F08
plate_number
P3
barcode_806R
806rcbc262
index_sequence
CCTTAAGTCAGT
DOB
1999-09-17T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2009-05-25T00:00:00
datehiv
2009-02-03T00:00:00
ageyart
9.69
duryart
7.41
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.616714752
weight
51.8
f24mrcscore
1
FEV1_baseline
2.069999933
FEVpcpred
78.77967502
FVC
2.5
FVCZ
-1.12954826
FVCpcpred
85.12515748
FEV1FVC
0.827999973
FEV1FVCZ
-1.115806171
cd4
NA
vload
9490
zwauk
-0.7932874
zhauk
-1.2598042
zbmiuk
-0.018317834
vllog
3.9772663
endtreatdate
['NA', '2017-09-22T00:00:00']
sp05time
08:15:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated