collection_date
2017-06-19
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1086
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
9.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
17.127468
host_height
81.89047672
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-06-15T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
44598
FinalReads_ASVpipeline
12909
sampling_induced_expectorated
expectorated
barcode
BSP0103
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
22005.52
templateDNA_16SqPCR_Cq
23.62635263
templateDNA_16SqPCR
0.0156086
well
F04
plate_number
P1
barcode_806R
806rcbc37
index_sequence
TCGAGGACTGCA
DOB
2007-10-09T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2015-06-08T00:00:00
datehiv
2014-04-28T00:00:00
ageyart
7.66
duryart
2.03
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.4291943
weight
30.8
f24mrcscore
1
FEV1_baseline
1.28
FEVpcpred
81.89047672
FVC
1.614374995
FVCZ
-0.769372074
FVCpcpred
90.2944328
FEV1FVC
0.792876485
FEV1FVCZ
-1.342653501
cd4
949
vload
48
zwauk
0.079242885
zhauk
-0.44906044
zbmiuk
0.44248366
vllog
1.6812413
endtreatdate
['2018-05-21T00:00:00', '2018-05-21T00:00:00']
sp05time
09:06:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-05T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-05T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated