collection_date
2017-09-20
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1028
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
20.855429
host_height
78.12760329
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-09-20T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
43427
FinalReads_ASVpipeline
13611
sampling_induced_expectorated
expectorated
barcode
BSP0188
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
31435.39
templateDNA_16SqPCR_Cq
23.1089684
templateDNA_16SqPCR
0.02229725
well
G08
plate_number
P1
barcode_806R
806rcbc70
index_sequence
TGAGCCGGAATC
DOB
1998-02-25T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2006-06-17T00:00:00
datehiv
2006-06-05T00:00:00
ageyart
8.31
duryart
10.34
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.697284835
weight
57.4
f24mrcscore
1
FEV1_baseline
2.650000095
FEVpcpred
78.12760329
FVC
2.895625114
FVCZ
-2.079471026
FVCpcpred
74.18258965
FEV1FVC
0.91517375
FEV1FVCZ
0.662809824
cd4
96
vload
983000
zwauk
-1.503619
zhauk
-1.6347572
zbmiuk
-0.39429566
vllog
5.9925537
endtreatdate
['NA', '2017-09-20T00:00:00']
sp05time
09:01:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-07T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-07T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated