collection_date
2016-10-21
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1029
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
21.477627
host_height
68.23423274
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-10-17T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
35874
FinalReads_ASVpipeline
12341
sampling_induced_expectorated
expectorated
barcode
BSP0030
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
899494.82
templateDNA_16SqPCR_Cq
18.04521946
templateDNA_16SqPCR
0.638015258
well
F05
plate_number
P3
barcode_806R
806rcbc238
index_sequence
CTCCTACTGTCT
DOB
1999-09-17T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2009-05-25T00:00:00
datehiv
2009-02-03T00:00:00
ageyart
9.69
duryart
7.41
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.3984113
weight
51.6
f24mrcscore
2
FEV1_baseline
1.76
FEVpcpred
68.23423274
FVC
2.15062499
FVCZ
-1.9253711
FVCpcpred
75.05208823
FEV1FVC
0.818366753
FEV1FVCZ
-1.321942686
cd4
264
vload
136000
zwauk
-0.70853001
zhauk
-1.4064789
zbmiuk
0.21784551
vllog
5.1335387
endtreatdate
['2017-09-22T00:00:00', '2017-09-22T00:00:00']
sp05time
09:56:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated