collection_date
2018-07-17
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
C141
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.8
ethnicity
black
host_occupation
student
host_disease
No HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
not applicable
host_height
not applicable
samp_size
['not applicable', '']
study_complt_stat
not applicable
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
comparison group
visit
Week 0
visit_date
not applicable
run_processing_batch
R1
sample_type
sequencing_control
RawReads_ASVpipeline
41367
FinalReads_ASVpipeline
8414
sampling_induced_expectorated
expectorated
barcode
BSP0459
sequencing_controls
yes
sequencing_control_details
WRrepeat
WRrepeats
Y
WRrepeats_WP
Y
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
38650.21
templateDNA_16SqPCR_Cq
22.74873697
templateDNA_16SqPCR
0.027414746
well
H11
plate_number
P3
barcode_806R
806rcbc288
index_sequence
GGCAACCTCAGA
DOB
1999-09-16T00:00:00
trial_arm
not applicable
adherence
not applicable
enrolmonth
NA
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-05-18T00:00:00
datehiv
2011-05-01T00:00:00
ageyart
11.67
duryart
7.16
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
not applicable
weight
not applicable
f24mrcscore
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
cd4
not applicable
vload
not applicable
zwauk
not applicable
zhauk
not applicable
zbmiuk
not applicable
vllog
not applicable
endtreatdate
['not applicable', 'not applicable']
sp05time
not applicable
all_3
not applicable
visit012
not applicable
visit1218
not applicable
visit018
not applicable
only2visits
not applicable
one_visit
not applicable
endfollowup
not applicable
dow
not applicable
dod
not applicable
lastvisit
not applicable
visittotno
not applicable
lastvisitdate
not applicable
treatstopreason
not applicable
cough_enrl
not applicable
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
not applicable
hospitalised12m
not applicable
reason_hospi
not applicable
antibiotic12m
not applicable
any3_reasons
not applicable
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated