collection_date
2018-05-31
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1044
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.7
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
22.164091
host_height
37.73150118
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-05-31T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
49465
FinalReads_ASVpipeline
10355
sampling_induced_expectorated
expectorated
barcode
BSP0414
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
394428.43
templateDNA_16SqPCR_Cq
19.34508228
templateDNA_16SqPCR
0.279769656
well
F07
plate_number
P4
barcode_806R
806rcbc350
index_sequence
AATTAGGCAGAG
DOB
1998-08-19T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2013-04-29T00:00:00
datehiv
2010-05-05T00:00:00
ageyart
14.69
duryart
3.71
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-4.530630067
weight
46.6
f24mrcscore
1
FEV1_baseline
0.850000024
FEVpcpred
37.73150118
FVC
1.135625005
FVCZ
-4.333932308
FVCpcpred
45.33380597
FEV1FVC
0.748486534
FEV1FVCZ
-2.106692161
cd4
NA
vload
1770
zwauk
-1.6667918
zhauk
-3.0860174
zbmiuk
0.173163
vllog
3.2479732
endtreatdate
['NA', '2017-12-14T00:00:00']
sp05time
10:35:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-05-31T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-05-31T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated