collection_date
2017-05-17
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1001
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
10.8
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
21.125214
host_height
73.24787059
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-05-17T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
41106
FinalReads_ASVpipeline
17345
sampling_induced_expectorated
expectorated
barcode
BSP0082
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
181191.53
templateDNA_16SqPCR_Cq
20.56786981
templateDNA_16SqPCR
0.128519871
well
C12
plate_number
P1
barcode_806R
806rcbc98
index_sequence
TCGTCGATAATC
DOB
2006-07-07T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2016-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-06-15T00:00:00
datehiv
2008-09-15T00:00:00
ageyart
4.94
duryart
5
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.030202091
weight
37.2
f24mrcscore
2
FEV1_baseline
1.129999995
FEVpcpred
73.24787059
FVC
1.52125001
FVCZ
-0.900744908
FVCpcpred
88.5809391
FEV1FVC
0.742810181
FEV1FVCZ
-2.247583972
cd4
601
vload
39
zwauk
0.24557695
zhauk
-1.5570301
zbmiuk
1.3423966
vllog
1.5910646
endtreatdate
['NA', '2017-05-17T00:00:00']
sp05time
09:00:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2017-11-01T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2017-11-01T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
yes
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated