collection_date
2018-02-27
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1022
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.5
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
17.221476
host_height
67.00432156
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-02-27T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40592
FinalReads_ASVpipeline
13376
sampling_induced_expectorated
expectorated
barcode
BSP0321
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
64181.98
templateDNA_16SqPCR_Cq
22.07346671
templateDNA_16SqPCR
0.045524532
well
E10
plate_number
P1
barcode_806R
806rcbc84
index_sequence
AGGCATCTTACG
DOB
1999-08-25T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2016-10
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2007-10-16T00:00:00
datehiv
2001-06-21T00:00:00
ageyart
8.14
duryart
8.99
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.511478547
weight
38.8
f24mrcscore
1
FEV1_baseline
1.799999952
FEVpcpred
67.00432156
FVC
2.286250114
FVCZ
-1.96012353
FVCpcpred
75.67129627
FEV1FVC
0.787315413
FEV1FVCZ
-1.480229874
cd4
NA
vload
81
zwauk
-4.9535403
zhauk
-3.8911793
zbmiuk
-2.149472
vllog
1.9084851
endtreatdate
['NA', '2017-09-12T00:00:00']
sp05time
08:56:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-02-27T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-02-27T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated