collection_date
2018-11-02
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1085
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
14.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
20.380285
host_height
86.11868831
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-11-02T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45973
FinalReads_ASVpipeline
12827
sampling_induced_expectorated
expectorated
barcode
BSP0556
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
66343.25
templateDNA_16SqPCR_Cq
22.04101202
templateDNA_16SqPCR
0.047057532
well
E09
plate_number
P2
barcode_806R
806rcbc172
index_sequence
TATGCACCAGTG
DOB
2004-06-12T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2009-11-15T00:00:00
datehiv
2009-03-15T00:00:00
ageyart
5.43
duryart
7.58
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.030364555
weight
44.4
f24mrcscore
1
FEV1_baseline
1.950000048
FEVpcpred
86.11868831
FVC
2.263750076
FVCZ
-0.907678408
FVCpcpred
88.74745186
FEV1FVC
0.861402532
FEV1FVCZ
-0.409964902
cd4
NA
vload
1700
zwauk
-0.84252745
zhauk
-2.1121352
zbmiuk
0.5939067
vllog
3.230449
endtreatdate
['NA', '2018-05-21T00:00:00']
sp05time
08:30:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-02T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-02T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated