collection_date
2017-01-12
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1044
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.4
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
19.896383
host_height
65.7301533
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-01-10T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
58826
FinalReads_ASVpipeline
22594
sampling_induced_expectorated
expectorated
barcode
BSP0046
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
243371.78
templateDNA_16SqPCR_Cq
20.05619322
templateDNA_16SqPCR
0.172624572
well
F04
plate_number
P4
barcode_806R
806rcbc326
index_sequence
TGCTGCTTAACA
DOB
1998-08-19T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
NA
rs14antib
no
dateart
2013-04-29T00:00:00
datehiv
2010-05-05T00:00:00
ageyart
14.69
duryart
3.71
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.5791602
weight
40.8
f24mrcscore
1
FEV1_baseline
1.44
FEVpcpred
65.7301533
FVC
1.791875005
FVCZ
-1.990008156
FVCpcpred
74.09843042
FEV1FVC
0.803627515
FEV1FVCZ
-1.545279727
cd4
793
vload
279
zwauk
-2.7161508
zhauk
-3.3784616
zbmiuk
-0.56817436
vllog
2.4456041
endtreatdate
['2017-12-14T00:00:00', '2017-12-14T00:00:00']
sp05time
09:02:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-05-31T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-05-31T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated