collection_date
2018-11-15
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1090
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
23.534435
host_height
89.8638095
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-11-15T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
37946
FinalReads_ASVpipeline
12159
sampling_induced_expectorated
expectorated
barcode
BSP0562
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
71916.16
templateDNA_16SqPCR_Cq
21.85160018
templateDNA_16SqPCR
0.051010418
well
C12
plate_number
P4
barcode_806R
806rcbc2
index_sequence
AATCCGTACAGC
DOB
1998-07-10T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2012-09-09T00:00:00
datehiv
2012-05-15T00:00:00
ageyart
14.17
duryart
4.8
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-0.777884866
weight
57.2
f24mrcscore
1
FEV1_baseline
2.359999895
FEVpcpred
89.8638095
FVC
2.688124895
FVCZ
-0.682945499
FVCpcpred
90.90043919
FEV1FVC
0.877935359
FEV1FVCZ
-0.240226234
cd4
NA
vload
NA
zwauk
-0.11574092
zhauk
-1.283739
zbmiuk
0.57962203
vllog
NA
endtreatdate
['NA', '2018-05-31T00:00:00']
sp05time
08:35:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-15T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-15T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated