collection_date
2017-01-30
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1049
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
14.9
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
16.468374
host_height
73.63990248
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-01-25T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
53992
FinalReads_ASVpipeline
19214
sampling_induced_expectorated
expectorated
barcode
BSP0052
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
C
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2718.01
templateDNA_16SqPCR_Cq
26.83528544
templateDNA_16SqPCR
0.001927897
well
D05
plate_number
P2
barcode_806R
806rcbc139
index_sequence
TAGCGGATCACG
DOB
2002-02-18T00:00:00
trial_arm
Azithromycin
adherence
Not Adherent
enrolmonth
2017-01
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2012-08-15T00:00:00
datehiv
2003-04-15T00:00:00
ageyart
10.49
duryart
4.46
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.9380056
weight
40.8
f24mrcscore
1
FEV1_baseline
1.98
FEVpcpred
73.63990248
FVC
2.335624933
FVCZ
-1.901549192
FVCpcpred
76.4876472
FEV1FVC
0.84773886
FEV1FVCZ
-0.532010222
cd4
824
vload
4200
zwauk
-1.7370037
zhauk
-1.3803678
zbmiuk
-1.5373679
vllog
3.6232493
endtreatdate
['2017-03-20T00:00:00', '2017-03-20T00:00:00']
sp05time
10:28:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-06-18T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-06-18T00:00:00
treatstopreason
By Physician
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated