collection_date
2018-06-06
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1045
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.2
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
22.854229
host_height
74.41285396
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-06-06T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45475
FinalReads_ASVpipeline
19185
sampling_induced_expectorated
expectorated
barcode
BSP0416
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
295701.5
templateDNA_16SqPCR_Cq
19.76936113
templateDNA_16SqPCR
0.20974225
well
B12
plate_number
P4
barcode_806R
806rcbc1
index_sequence
AATCAGTCTCGT
DOB
1999-02-20T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-01
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-06-15T00:00:00
datehiv
2011-06-15T00:00:00
ageyart
12.31
duryart
5.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.940040016
weight
46.8
f24mrcscore
1
FEV1_baseline
1.629999995
FEVpcpred
74.41285396
FVC
1.830625057
FVCZ
-1.877672056
FVCpcpred
75.4453462
FEV1FVC
0.890406252
FEV1FVCZ
-0.238842267
cd4
NA
vload
NA
zwauk
-1.6186666
zhauk
-3.3992417
zbmiuk
0.44888172
vllog
NA
endtreatdate
['NA', '2018-01-10T00:00:00']
sp05time
08:45:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-06-06T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-06-06T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated