collection_date
2017-01-03
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1040
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
12.7
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
12.664178
host_height
45.49079535
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-12-13T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40022
FinalReads_ASVpipeline
14959
sampling_induced_expectorated
expectorated
barcode
BSP0042
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
183725.24
templateDNA_16SqPCR_Cq
20.41902368
templateDNA_16SqPCR
0.130317042
well
C03
plate_number
P3
barcode_806R
806rcbc219
index_sequence
CGTAACCAACCA
DOB
2004-04-16T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-01
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2007-10-15T00:00:00
datehiv
2007-08-15T00:00:00
ageyart
3.5
duryart
9.22
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-4.0510802
weight
22.2
f24mrcscore
1
FEV1_baseline
0.74
FEVpcpred
45.49079535
FVC
0.96312499
FVCZ
-3.871171613
FVCpcpred
52.69408123
FEV1FVC
0.768332269
FEV1FVCZ
-1.827780687
cd4
659
vload
411
zwauk
-4.3044758
zhauk
-2.661248
zbmiuk
-4.0768461
vllog
2.6138418
endtreatdate
['2017-12-05T00:00:00', '2017-12-05T00:00:00']
sp05time
12:00:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-05-22T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-05-22T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated