collection_date
2017-03-10
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1056
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
13.2
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
15.957246
host_height
64.68830161
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-02-28T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
54834
FinalReads_ASVpipeline
25711
sampling_induced_expectorated
expectorated
barcode
BSP0059
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
525590.94
templateDNA_16SqPCR_Cq
18.92227867
templateDNA_16SqPCR
0.372803744
well
B04
plate_number
P4
barcode_806R
806rcbc322
index_sequence
CATATCGCAGTT
DOB
2003-12-25T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-03
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2013-06-25T00:00:00
datehiv
2012-04-05T00:00:00
ageyart
9.5
duryart
3.71
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.6564991
weight
35
f24mrcscore
1
FEV1_baseline
1.39
FEVpcpred
64.68830161
FVC
2.198124886
FVCZ
-0.604280418
FVCpcpred
92.21479253
FEV1FVC
0.632357149
FEV1FVCZ
-3.178195252
cd4
1362
vload
39
zwauk
-1.7038066
zhauk
-1.1978892
zbmiuk
-1.4657197
vllog
1.5910646
endtreatdate
['2018-02-16T00:00:00', '2018-02-16T00:00:00']
sp05time
09:39:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-07-27T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-07-27T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated