collection_date
2016-09-09
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1011
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
15.4
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
20.609356
host_height
76.22997518
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2016-09-07T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
46492
FinalReads_ASVpipeline
17661
sampling_induced_expectorated
expectorated
barcode
BSP0011
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
362436.25
templateDNA_16SqPCR_Cq
19.49301263
templateDNA_16SqPCR
0.257077476
well
F07
plate_number
P2
barcode_806R
806rcbc157
index_sequence
CCATGCGATAAC
DOB
2001-03-23T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2016-09
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2008-06-15T00:00:00
datehiv
2008-06-15T00:00:00
ageyart
7.23
duryart
8.24
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.7538322
weight
50.8
f24mrcscore
1
FEV1_baseline
2.08
FEVpcpred
76.22997518
FVC
2.153100014
FVCZ
-2.451176445
FVCpcpred
69.731654
FEV1FVC
0.966048911
FEV1FVCZ
1.4501427
cd4
518
vload
90
zwauk
-0.77759981
zhauk
-1.8090644
zbmiuk
0.40727264
vllog
1.9542425
endtreatdate
['2017-08-11T00:00:00', '2017-08-11T00:00:00']
sp05time
09:55:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-01-30T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-01-30T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated