collection_date
2019-08-14
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1197
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.9
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
not applicable
host_height
not applicable
samp_size
['not applicable', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
not applicable
run_processing_batch
R1
sample_type
sequencing_control
RawReads_ASVpipeline
41502
FinalReads_ASVpipeline
17435
sampling_induced_expectorated
expectorated
barcode
BSP0740
sequencing_controls
yes
sequencing_control_details
WRrepeat
WRrepeats
AAA
WRrepeats_WP
AAA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
5046.42
templateDNA_16SqPCR_Cq
25.79128969
templateDNA_16SqPCR
0.003579443
well
H10
plate_number
P3
barcode_806R
806rcbc280
index_sequence
ACTTATGCGGTT
DOB
1998-09-04T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2018-03
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-02-15T00:00:00
datehiv
2011-02-01T00:00:00
ageyart
12.45
duryart
7.11
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
not applicable
weight
not applicable
f24mrcscore
not applicable
FEV1_baseline
not applicable
FEVpcpred
not applicable
FVC
not applicable
FVCZ
not applicable
FVCpcpred
not applicable
FEV1FVC
not applicable
FEV1FVCZ
not applicable
cd4
not applicable
vload
not applicable
zwauk
not applicable
zhauk
not applicable
zbmiuk
not applicable
vllog
not applicable
endtreatdate
['not applicable', '2019-02-27T00:00:00']
sp05time
not applicable
all_3
not applicable
visit012
not applicable
visit1218
not applicable
visit018
not applicable
only2visits
not applicable
one_visit
not applicable
endfollowup
2019-08-14T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2019-08-14T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
not applicable
hospitalised12m
not applicable
reason_hospi
not applicable
antibiotic12m
not applicable
any3_reasons
not applicable
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated