collection_date
2017-10-02
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1032
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.6
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.747648
host_height
61.07388196
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-10-02T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
38735
FinalReads_ASVpipeline
16818
sampling_induced_expectorated
expectorated
barcode
BSP0199
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
485826.52
templateDNA_16SqPCR_Cq
18.96578566
templateDNA_16SqPCR
0.344598687
well
G10
plate_number
P3
barcode_806R
806rcbc279
index_sequence
AGTTTGCAACGC
DOB
1997-02-16T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2016-10
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2006-07-11T00:00:00
datehiv
2006-05-15T00:00:00
ageyart
9.4
duryart
10.31
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.907558748
weight
43.6
f24mrcscore
1
FEV1_baseline
1.53
FEVpcpred
61.07388196
FVC
1.63499999
FVCZ
-3.259198973
FVCpcpred
58.05954978
FEV1FVC
0.935779804
FEV1FVCZ
0.771744332
cd4
235
vload
166000
zwauk
-2.2292759
zhauk
-1.8469281
zbmiuk
-1.3523988
vllog
5.220108
endtreatdate
['NA', '2017-10-02T00:00:00']
sp05time
11:04:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-03-19T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-03-19T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated