collection_date
2018-04-30
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1077
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
8.4
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
13.704433
host_height
95.66209103
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-04-30T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
52152
FinalReads_ASVpipeline
20741
sampling_induced_expectorated
expectorated
barcode
BSP0390
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
93048.96
templateDNA_16SqPCR_Cq
21.55
templateDNA_16SqPCR
0.066
well
D02
plate_number
P4
barcode_806R
806rcbc308
index_sequence
GGCTGTATGGGT
DOB
2009-11-24T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2014-06-30T00:00:00
datehiv
2014-06-14T00:00:00
ageyart
4.6
duryart
2.91
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-0.330500654
weight
18.6
f24mrcscore
1
FEV1_baseline
1.039999962
FEVpcpred
95.66209103
FVC
1.21875
FVCZ
0.176244744
FVCpcpred
102.3136826
FEV1FVC
0.853333302
FEV1FVCZ
-1.031172824
cd4
1096
vload
23600
zwauk
-2.6422694
zhauk
-2.3604376
zbmiuk
-1.555858
vllog
4.3729119
endtreatdate
['NA', '2018-04-30T00:00:00']
sp05time
10:20:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-15T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-15T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated