collection_date
2018-05-04
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1080
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
10.1
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
13.588454
host_height
87.81741169
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-05-04T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
36596
FinalReads_ASVpipeline
13065
sampling_induced_expectorated
expectorated
barcode
BSP0393
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
66357.44
templateDNA_16SqPCR_Cq
22.02510946
templateDNA_16SqPCR
0.047067596
well
F09
plate_number
P1
barcode_806R
806rcbc77
index_sequence
ACGGGACATGCT
DOB
2008-03-22T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-03-31T00:00:00
datehiv
2010-07-15T00:00:00
ageyart
3.02
duryart
6.17
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-0.97061103
weight
19.6
f24mrcscore
1
FEV1_baseline
1.080000043
FEVpcpred
87.81741169
FVC
1.210625052
FVCZ
-0.964235394
FVCpcpred
87.92379376
FEV1FVC
0.892101184
FEV1FVCZ
0.002230363
cd4
405
vload
123
zwauk
-3.8542998
zhauk
-3.0308878
zbmiuk
-2.1160624
vllog
2.089905
endtreatdate
['NA', '2018-05-04T00:00:00']
sp05time
08:55:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-19T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-19T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated