collection_date
2018-05-28
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1043
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.9
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
19.540367
host_height
63.59746087
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-05-28T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45765
FinalReads_ASVpipeline
18345
sampling_induced_expectorated
expectorated
barcode
BSP0407
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
32534.03
templateDNA_16SqPCR_Cq
23.01980208
templateDNA_16SqPCR
0.02307652
well
F12
plate_number
P4
barcode_806R
806rcbc5
index_sequence
TTACTGTGCGAT
DOB
1997-06-04T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-01
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-08-26T00:00:00
datehiv
2010-06-15T00:00:00
ageyart
14.23
duryart
5.37
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.725054355
weight
49.4
f24mrcscore
1
FEV1_baseline
1.74000001
FEVpcpred
63.59746087
FVC
2.15062499
FVCZ
-2.341248009
FVCpcpred
69.4393254
FEV1FVC
0.80906714
FEV1FVCZ
-1.207524801
cd4
NA
vload
90
zwauk
-1.2161527
zhauk
-0.77149528
zbmiuk
-0.99919528
vllog
1.9542425
endtreatdate
['NA', '2017-12-11T00:00:00']
sp05time
11:14:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-05-28T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-05-28T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
yes
any3_reasons
2
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated