collection_date
2017-04-05
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1062
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
14.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
16.498163
host_height
76.8082612
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-04-03T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
35647
FinalReads_ASVpipeline
13552
sampling_induced_expectorated
expectorated
barcode
BSP0069
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
379245.02
templateDNA_16SqPCR_Cq
19.48
templateDNA_16SqPCR
0.269
well
F01
plate_number
P1
barcode_806R
806rcbc13
index_sequence
CCTCGTTCGACT
DOB
2002-08-17T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-04
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2014-10-14T00:00:00
datehiv
2011-06-15T00:00:00
ageyart
12.16
duryart
2.48
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.7093667
weight
32.8
f24mrcscore
2
FEV1_baseline
1.59
FEVpcpred
76.8082612
FVC
1.83375001
FVCZ
-1.656925403
FVCpcpred
79.50504097
FEV1FVC
0.867075678
FEV1FVCZ
-0.442377326
cd4
668
vload
1130
zwauk
-2.8313529
zhauk
-3.1176
zbmiuk
-1.4048965
vllog
3.0530784
endtreatdate
['2018-03-07T00:00:00', '2018-03-07T00:00:00']
sp05time
11:16:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-22T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-22T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated