collection_date
2017-05-29
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1077
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
7.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
14.080856
host_height
83.49876674
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-05-22T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45130
FinalReads_ASVpipeline
9382
sampling_induced_expectorated
expectorated
barcode
BSP0089
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
100225.01
templateDNA_16SqPCR_Cq
21.44
templateDNA_16SqPCR
0.07109
well
D01
plate_number
P4
barcode_806R
806rcbc300
index_sequence
TCTGCAGTTGGA
DOB
2009-11-24T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2014-06-30T00:00:00
datehiv
2014-06-14T00:00:00
ageyart
4.6
duryart
2.91
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.2252978
weight
17.6
f24mrcscore
1
FEV1_baseline
0.82
FEVpcpred
83.49876674
FVC
1.013124943
FVCZ
-0.387997796
FVCpcpred
94.82262637
FEV1FVC
0.809376966
FEV1FVCZ
-1.693180896
cd4
1057
vload
6510
zwauk
-2.3713689
zhauk
-2.3659554
zbmiuk
-1.126081
vllog
3.813581
endtreatdate
['2018-04-30T00:00:00', '2018-04-30T00:00:00']
sp05time
10:59:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-15T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-15T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated