collection_date
2017-04-10
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1065
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.2
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
19.267817
host_height
73.9653553
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-04-06T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40422
FinalReads_ASVpipeline
15058
sampling_induced_expectorated
expectorated
barcode
BSP0072
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
11919.39
templateDNA_16SqPCR_Cq
24.61702581
templateDNA_16SqPCR
0.008454471
well
C04
plate_number
P2
barcode_806R
806rcbc130
index_sequence
ATGGTTGTTGGC
DOB
1999-01-01T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2017-04
attendschool
no
rs15antibty
NA
rs14antib
no
dateart
2014-04-22T00:00:00
datehiv
2007-05-15T00:00:00
ageyart
15.3
duryart
2.97
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.9872032
weight
57.6
f24mrcscore
1
FEV1_baseline
2.71
FEVpcpred
73.9653553
FVC
3.300625086
FVCZ
-1.771293296
FVCpcpred
78.00293376
FEV1FVC
0.821056608
FEV1FVCZ
-0.778780818
cd4
493
vload
1440
zwauk
-1.203719
zhauk
-0.6164403
zbmiuk
-0.87774295
vllog
3.1583624
endtreatdate
['2018-03-12T00:00:00', '2018-03-12T00:00:00']
sp05time
10:44:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-27T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-27T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated