collection_date
2018-11-09
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1087
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.6
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
14.634734
host_height
40.8261166
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-11-09T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40130
FinalReads_ASVpipeline
19074
sampling_induced_expectorated
expectorated
barcode
BSP0559
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2534389.11
templateDNA_16SqPCR_Cq
16.49713586
templateDNA_16SqPCR
1.797652285
well
D09
plate_number
P3
barcode_806R
806rcbc268
index_sequence
ATGGATACGCTC
DOB
2002-03-29T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2010-11-15T00:00:00
datehiv
2010-09-05T00:00:00
ageyart
8.63
duryart
6.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-4.286481009
weight
30.6
f24mrcscore
1
FEV1_baseline
0.970000029
FEVpcpred
40.8261166
FVC
1.254999995
FVCZ
-4.275570512
FVCpcpred
47.54809211
FEV1FVC
0.772908392
FEV1FVCZ
-1.768936003
cd4
NA
vload
296000
zwauk
-5.5823784
zhauk
-4.1624417
zbmiuk
-3.6508605
vllog
5.4712915
endtreatdate
['NA', '2018-05-29T00:00:00']
sp05time
09:41:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated