collection_date
2017-06-23
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1087
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
15.2
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
17.205196
host_height
56.90579455
samp_size
['1.5', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-06-21T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
34306
FinalReads_ASVpipeline
9901
sampling_induced_expectorated
expectorated
barcode
BSP0104
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1860694.14
templateDNA_16SqPCR_Cq
16.95893161
templateDNA_16SqPCR
1.319797762
well
D07
plate_number
P3
barcode_806R
806rcbc252
index_sequence
TGAGGATGATAG
DOB
2002-03-29T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2010-11-15T00:00:00
datehiv
2010-09-05T00:00:00
ageyart
8.63
duryart
6.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-3.1298749
weight
34.4
f24mrcscore
1
FEV1_baseline
1.22
FEVpcpred
56.90579455
FVC
1.527500033
FVCZ
-2.90612547
FVCpcpred
64.19194883
FEV1FVC
0.798690672
FEV1FVCZ
-1.461198267
cd4
342
vload
183000
zwauk
-3.0388582
zhauk
-3.5922568
zbmiuk
-1.1666681
vllog
5.2624512
endtreatdate
['2018-05-29T00:00:00', '2018-05-29T00:00:00']
sp05time
09:00:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated