collection_date
2018-10-19
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1080
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
10.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
14.096098
host_height
88.28171259
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-10-19T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
30656
FinalReads_ASVpipeline
9898
sampling_induced_expectorated
expectorated
barcode
BSP0547
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
88160
templateDNA_16SqPCR_Cq
21.61296556
templateDNA_16SqPCR
0.0625
well
F10
plate_number
P1
barcode_806R
806rcbc85
index_sequence
CAGCTAGAACGC
DOB
2008-03-22T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-03-31T00:00:00
datehiv
2010-07-15T00:00:00
ageyart
3.02
duryart
6.17
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-0.934878743
weight
20.4
f24mrcscore
1
FEV1_baseline
1.100000024
FEVpcpred
88.28171259
FVC
1.279374957
FVCZ
-0.664345636
FVCpcpred
91.71487027
FEV1FVC
0.859794869
FEV1FVCZ
-0.529956673
cd4
NA
vload
360
zwauk
-3.8085079
zhauk
-3.2635171
zbmiuk
-1.7796254
vllog
2.5563025
endtreatdate
['NA', '2018-05-04T00:00:00']
sp05time
08:46:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-19T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-19T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated