collection_date
2017-09-12
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1021
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.8
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
17.481098
host_height
55.72699864
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2017-09-12T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
38148
FinalReads_ASVpipeline
11211
sampling_induced_expectorated
expectorated
barcode
BSP0175
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1609088.47
templateDNA_16SqPCR_Cq
17.27442502
templateDNA_16SqPCR
1.141332856
well
E09
plate_number
P4
barcode_806R
806rcbc365
index_sequence
CCTATCCTTGGC
DOB
2000-11-18T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2016-10
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2013-03-06T00:00:00
datehiv
2012-05-09T00:00:00
ageyart
12.3
duryart
3.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-3.300086354
weight
36.4
f24mrcscore
1
FEV1_baseline
1.230000019
FEVpcpred
55.72699864
FVC
1.36500001
FVCZ
-3.45274186
FVCpcpred
56.29143312
FEV1FVC
0.901098909
FEV1FVCZ
-0.176875419
cd4
1196
vload
439
zwauk
-3.4896643
zhauk
-3.1685331
zbmiuk
-1.5122757
vllog
2.6424646
endtreatdate
['NA', '2017-09-12T00:00:00']
sp05time
12:05:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-02-27T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-02-27T00:00:00
treatstopreason
Completed
cough_enrl
yes
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated