collection_date
2018-08-10
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1060
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
18.8
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
25.422043
host_height
79.5842938
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-08-10T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
28527
FinalReads_ASVpipeline
8442
sampling_induced_expectorated
expectorated
barcode
BSP0484
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1093325.32
templateDNA_16SqPCR_Cq
17.91
templateDNA_16SqPCR
0.7755
well
C02
plate_number
P3
barcode_806R
806rcbc211
index_sequence
TTATCACGTGCA
DOB
1999-10-02T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-03
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2010-05-20T00:00:00
datehiv
2001-06-15T00:00:00
ageyart
10.63
duryart
6.84
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-1.55595537
weight
66.8
f24mrcscore
1
FEV1_baseline
2.269999981
FEVpcpred
79.5842938
FVC
2.710000038
FVCZ
-1.182784297
FVCpcpred
84.41290311
FEV1FVC
0.837638358
FEV1FVCZ
-0.906055267
cd4
NA
vload
175000
zwauk
0.97214663
zhauk
-0.25342464
zbmiuk
1.2254837
vllog
5.2430382
endtreatdate
['NA', '2018-02-23T00:00:00']
sp05time
09:26:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-10T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-10T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated