collection_date
2018-05-29
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1087
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.1
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
16.832069
host_height
48.56989438
samp_size
['NA', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-05-29T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
45283
FinalReads_ASVpipeline
20282
sampling_induced_expectorated
expectorated
barcode
BSP0411
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
1684611.31
templateDNA_16SqPCR_Cq
17.10750399
templateDNA_16SqPCR
1.194901506
well
D08
plate_number
P3
barcode_806R
806rcbc260
index_sequence
AAGCCTACACGT
DOB
2002-03-29T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-06
attendschool
yes
rs15antibty
NA
rs14antib
NA
dateart
2010-11-15T00:00:00
datehiv
2010-09-05T00:00:00
ageyart
8.63
duryart
6.6
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-3.734692929
weight
35
f24mrcscore
1
FEV1_baseline
1.129999995
FEVpcpred
48.56989438
FVC
1.438125014
FVCZ
-3.604297199
FVCpcpred
55.6642822
FEV1FVC
0.785745317
FEV1FVCZ
-1.613728302
cd4
351
vload
262000
zwauk
-3.8954735
zhauk
-3.949424
zbmiuk
-1.7147236
vllog
5.4183011
endtreatdate
['NA', '2018-05-29T00:00:00']
sp05time
NA
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-11-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-11-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated