collection_date
2018-07-09
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1054
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.5
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
19.812695
host_height
71.28775522
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-07-09T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
40854
FinalReads_ASVpipeline
14529
sampling_induced_expectorated
expectorated
barcode
BSP0448
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
X
WRrepeats_WP
NA
WRrepeats_BP
X
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
593190.7
templateDNA_16SqPCR_Cq
18.84738005
templateDNA_16SqPCR
0.420752525
well
A07
plate_number
P1
barcode_806R
806rcbc56
index_sequence
AGTAGAGGGATG
DOB
1998-12-16T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-02
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2009-08-28T00:00:00
datehiv
2009-08-01T00:00:00
ageyart
10.7
duryart
7.48
artdrug1stline
no
artdrug2ndline
yes
artreg
ATV/LPV/PI
fev1z
-2.169737883
weight
47.6
f24mrcscore
1
FEV1_baseline
1.85
FEVpcpred
71.28775522
FVC
2.128750086
FVCZ
-2.058550586
FVCpcpred
73.11856805
FEV1FVC
0.869054586
FEV1FVCZ
-0.440586254
cd4
NA
vload
36000
zwauk
-1.4910641
zhauk
-1.42931
zbmiuk
-0.73549092
vllog
4.5563025
endtreatdate
['NA', '2018-01-22T00:00:00']
sp05time
09:30:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-07-09T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-07-09T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated