collection_date
2018-08-27
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1065
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
19.6
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
19.443666
host_height
58.38571308
samp_size
['1.5', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-08-27T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
41031
FinalReads_ASVpipeline
13213
sampling_induced_expectorated
expectorated
barcode
BSP0504
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
24593.4
templateDNA_16SqPCR_Cq
23.53013597
templateDNA_16SqPCR
0.017444199
well
C07
plate_number
P2
barcode_806R
806rcbc154
index_sequence
CTCGAGAGTACG
DOB
1999-01-01T00:00:00
trial_arm
Placebo
adherence
Not Adherent
enrolmonth
2017-04
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2014-04-22T00:00:00
datehiv
2007-05-15T00:00:00
ageyart
15.3
duryart
2.97
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-3.17498407
weight
58.8
f24mrcscore
1
FEV1_baseline
2.200000048
FEVpcpred
58.38571308
FVC
3.02125001
FVCZ
-2.499064304
FVCpcpred
69.02274036
FEV1FVC
0.728175438
FEV1FVCZ
-1.956414081
cd4
NA
vload
NA
zwauk
-1.3100771
zhauk
-0.48751661
zbmiuk
-1.0897506
vllog
NA
endtreatdate
['NA', '2018-03-12T00:00:00']
sp05time
09:10:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-27T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-27T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated