collection_date
2018-10-16
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1076
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
13
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.463089
host_height
82.99728438
samp_size
['1', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-10-16T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
38587
FinalReads_ASVpipeline
8809
sampling_induced_expectorated
expectorated
barcode
BSP0544
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
331608.01
templateDNA_16SqPCR_Cq
19.60058005
templateDNA_16SqPCR
0.235210884
well
G03
plate_number
P4
barcode_806R
806rcbc319
index_sequence
TGCGCTTGGATA
DOB
2005-09-14T00:00:00
trial_arm
Placebo
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
NA
datehiv
2007-06-15T00:00:00
ageyart
NA
duryart
NA
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.301141293
weight
45.8
f24mrcscore
1
FEV1_baseline
2.019999981
FEVpcpred
82.99728438
FVC
2.071249962
FVCZ
-1.893955417
FVCpcpred
76.00540837
FEV1FVC
0.975256496
FEV1FVCZ
1.654897623
cd4
NA
vload
NA
zwauk
-0.000794482
zhauk
0.25815332
zbmiuk
-0.15326171
vllog
NA
endtreatdate
['NA', '2018-04-24T00:00:00']
sp05time
09:28:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-16T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-16T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
yes
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
1
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated