collection_date
2018-01-15
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1049
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
15.9
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
18.082064
host_height
82.21280308
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-01-15T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
52222
FinalReads_ASVpipeline
16144
sampling_induced_expectorated
expectorated
barcode
BSP0267
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
48052.4
templateDNA_16SqPCR_Cq
22.52502507
templateDNA_16SqPCR
0.034083755
well
D07
plate_number
P2
barcode_806R
806rcbc155
index_sequence
AACGAGAACTGA
DOB
2002-02-18T00:00:00
trial_arm
Azithromycin
adherence
Not Adherent
enrolmonth
2017-01
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2012-08-15T00:00:00
datehiv
2003-04-15T00:00:00
ageyart
10.49
duryart
4.46
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.323350315
weight
51.4
f24mrcscore
1
FEV1_baseline
2.680000067
FEVpcpred
82.21280308
FVC
3.145625114
FVCZ
-1.268034941
FVCpcpred
84.25966035
FEV1FVC
0.851976942
FEV1FVCZ
-0.376697973
cd4
646
vload
89
zwauk
-0.97892314
zhauk
-0.58284855
zbmiuk
-0.87410456
vllog
1.9493901
endtreatdate
['NA', '2017-03-20T00:00:00']
sp05time
08:27:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-06-18T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-06-18T00:00:00
treatstopreason
By Physician
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
yes
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated