collection_date
2018-10-29
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1082
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
20.9
ethnicity
black
host_occupation
missing
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
17.731833
host_height
80.72764628
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 72
visit_date
2018-10-29T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
33032
FinalReads_ASVpipeline
12947
sampling_induced_expectorated
expectorated
barcode
BSP0549
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
AG
WRrepeats_WP
AG
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
740737.05
templateDNA_16SqPCR_Cq
18.33542702
templateDNA_16SqPCR
0.525407735
well
G05
plate_number
P3
barcode_806R
806rcbc239
index_sequence
GTAAGTCGTGGC
DOB
1997-11-07T00:00:00
trial_arm
Azithromycin
adherence
Not Adherent
enrolmonth
2017-06
attendschool
no
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2014-04-30T00:00:00
datehiv
2009-08-21T00:00:00
ageyart
16.48
duryart
3.12
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.46624871
weight
41.4
f24mrcscore
1
FEV1_baseline
2.029999971
FEVpcpred
80.72764628
FVC
2.253124952
FVCZ
-1.54561687
FVCpcpred
79.60264328
FEV1FVC
0.90097088
FEV1FVCZ
0.159692727
cd4
NA
vload
NA
zwauk
-2.6742487
zhauk
-1.7983322
zbmiuk
-1.9397188
vllog
NA
endtreatdate
['NA', '2018-05-14T00:00:00']
sp05time
09:03:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-29T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-29T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated