collection_date
2018-03-08
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1063
host_sex
male
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
17.3
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
COTRIMOXAZOLE
host_hiv_stat
yes
host_body_mass_index
15.182168
host_height
69.76583089
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 48
visit_date
2018-03-08T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
55889
FinalReads_ASVpipeline
23464
sampling_induced_expectorated
expectorated
barcode
BSP0336
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2478.49
templateDNA_16SqPCR_Cq
26.91
templateDNA_16SqPCR
0.001758
well
B02
plate_number
P4
barcode_806R
806rcbc306
index_sequence
ACGTAAATCGCC
DOB
2000-11-17T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-04
attendschool
yes
rs15antibty
COTRIMOXAZOLE
rs14antib
yes
dateart
2011-10-24T00:00:00
datehiv
2009-06-15T00:00:00
ageyart
10.93
duryart
5.45
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-2.270278987
weight
50.4
f24mrcscore
1
FEV1_baseline
2.819999933
FEVpcpred
69.76583089
FVC
2.894375086
FVCZ
-3.114210056
FVCpcpred
61.56321572
FEV1FVC
0.974303554
FEV1FVCZ
1.932444907
cd4
619
vload
37000
zwauk
-1.9210248
zhauk
0.8132717
zbmiuk
-3.3860335
vllog
4.5682015
endtreatdate
['NA', '2018-03-08T00:00:00']
sp05time
10:11:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-08-23T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-08-23T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
yes
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated