collection_date
2017-05-31
env_broad_scale
human
env_local_scale
respiratory tract
env_medium
sputum
geo_loc_name
Zimbabwe: Harare
host
Homo sapiens
lat_lon
17.82 S 31.04 E
host_subject_id
B1079
host_sex
female
host_tissue_sampled
['human respiratory', 'human respiratory']
host_age
16.1
ethnicity
black
host_occupation
student
host_disease
HIV-associated chronic lung disease
drug_usage
NA
host_hiv_stat
yes
host_body_mass_index
22.83062
host_height
80.78355482
samp_size
['2', '']
study_complt_stat
completed 18 months
isolation_source
sputum
pulmonary_disord
HIV-associated chronic lung disease
samp_mat_process
stored in primestore
samp_store_temp
-80 °C
smoker
no
group
trial
visit
Week 0
visit_date
2017-05-24T00:00:00
run_processing_batch
R1
sample_type
SP
RawReads_ASVpipeline
32941
FinalReads_ASVpipeline
9653
sampling_induced_expectorated
expectorated
barcode
BSP0092
sequencing_controls
no
sequencing_control_details
NA
WRrepeats
NA
WRrepeats_WP
NA
WRrepeats_BP
NA
BRrepeats
NA
EXrepeats
NA
nontemplate
NA
primestore_detail
NA
mock
NA
sample_extraction_controls
no
zymo_DNA
no
templateDNA_16SqPCR_copies
2048797.69
templateDNA_16SqPCR_Cq
17.04923191
templateDNA_16SqPCR
1.453220358
well
F11
plate_number
P1
barcode_806R
806rcbc93
index_sequence
CCACCTACTCCA
DOB
2001-04-15T00:00:00
trial_arm
Azithromycin
adherence
Adherent
enrolmonth
2017-05
attendschool
yes
rs15antibty
NA
rs14antib
no
dateart
2009-06-16T00:00:00
datehiv
2007-10-12T00:00:00
ageyart
8.17
duryart
7.96
artdrug1stline
yes
artdrug2ndline
no
artreg
EFV/NVP
fev1z
-1.4680216
weight
59.4
f24mrcscore
2
FEV1_baseline
2.24
FEVpcpred
80.78355482
FVC
2.501874924
FVCZ
-1.465912017
FVCpcpred
80.97638782
FEV1FVC
0.895328535
FEV1FVCZ
-0.109655239
cd4
601
vload
348
zwauk
0.43374562
zhauk
-0.32647675
zbmiuk
0.79361093
vllog
2.5415792
endtreatdate
['2018-05-02T00:00:00', '2018-05-02T00:00:00']
sp05time
10:38:00
all_3
yes
visit012
yes
visit1218
yes
visit018
yes
only2visits
no
one_visit
no
endfollowup
2018-10-17T00:00:00
dow
NA
dod
NA
lastvisit
18 mths
visittotno
7
lastvisitdate
2018-10-17T00:00:00
treatstopreason
Completed
cough_enrl
no
cotrimoxazole
no
adm
no
nadm
NA
tbtreat
no
acut_exac12m
no
hospitalised12m
no
reason_hospi
no
antibiotic12m
no
any3_reasons
0
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated