13338.St.neg.GLD047
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617084
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD047
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.2
alcohol_g_usda
4.16
alpha_carotene_mcg_usda
398.98
beta_carotene_mcg_usda
2395.83
beta_cryptoxanthin_mcg_usda
47.23
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
9.77
calcium_mg_usda
1262.19
carbohydrate_g_usda
179.77
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
298.81
cohort
HIV negative MSM
collection_timestamp
10/16/15
constipation_24hr_new
NO
copper_mg_usda
1.35
crp_ng_ml
3338.818156
decreased_stools_new
1
dietary_fiber_g_usda
14.59
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1663.71
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
404.63
folic_acid_mcg_usda
97.24
food_folate_mcg_usda
239.2
gender
male
gi_summary_score
2.071428571
glucose
96
gm_csf_pg_ml
0.195416098
gramwt_g_usda
5471.15
hard_stools_new
1
hdl
32
heartburn_new
4
hispanic
No
host age
39
host body habitat
colon
host body mass index
29.8
host body product
feces
host common name
human
host height
188
host scientific name
Homo sapiens
host subject id
HIV161
host taxid
9606
host weight
105.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
253.2959942
ifabp_pg_ml
3009.022
il_10_pg_ml
232.6728708
il_12_23p40_pg_ml
192.3799747
il_15_pg_ml
3.219279027
il_16_pg_ml
374.3386096
il_17a_pg_ml
3.22280917
il_22_pg_ml
327.8565932
il_6_pg_ml
417.5511146
il_7_pg_ml
8.002714724
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
3
insulin
11
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.12
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10628.37838
ldl
84
leptin
27
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
4
lutein_zeaxanthin_mcg_usda
1985.58
lycopene_mcg_usda
3753.88
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
303.65
mcp_1_pg_ml
9402.793703
metab_disease_score_binary
HIGH
metabolic_disease_score
1.613373797
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.37
mfa_18_1_octadecenoic_acid_g_usda
25.11
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.3
mped_add_sug_usda
9.09
mped_dairy_cheese_usda
0.58
mped_dairy_milk_usda
0.92
mped_dairy_total_usda
2.23
mped_dairy_yogurt_usda
0.73
mped_discfat_oil_usda
11.54
mped_discfat_sol_usda
54.09
mped_fruit_citmlb_usda
0.12
mped_fruit_other_usda
0.45
mped_fruit_total_usda
0.57
mped_grain_nwhl_usda
3.31
mped_grain_total_usda
3.55
mped_grain_whl_usda
0.24
mped_legumes_usda
0.16
mped_m_egg_usda
0.57
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.05
mped_m_frank_usda
0.28
mped_m_meat_usda
1.22
mped_m_mpf_usda
2.1
mped_m_nutsd_usda
0.23
mped_m_organ_usda
0.01
mped_m_poult_usda
0.54
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.09
mped_vegetable_drkgr_usda
0.43
mped_vegetable_other_usda
0.58
mped_vegetable_potato_usda
0.4
mped_vegetable_starcy_usda
0.1
mped_vegetable_tomato_usda
0.21
mped_vegetable_total_usda
1.82
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
13.07
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.58
pfa_18_3_octadecatrienoic_acig_g_usda
1.45
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1227.41
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2897.49
probiotics_1wk
greek yogurt
protein_g_usda
63.28
race
White
rai_frequency_new
Never
relationship_status_new
Married/living with partner
retinol_mcg_usda
408.96
riboflavin_vitamin_b2_mg_usda
2
saa_ng_ml
814.4865954
sample name
qiita_sid_13338:13338.St.neg.GLD047
sample type
stool
scd14_pg_ml
1189510.574
scd163_ng_ml
733.9538319
selenium_mcg_usda
72.39
sfa_10_0_decanoic_acid_g_usda
0.95
sfa_12_0_dodecanoic_acid_g_usda
1.25
sfa_14_0_tetradecanoic_acid_g_usda
4.08
sfa_16_0_hexadecanoic_acid_g_usda
16.05
sfa_18_0_octadecanoic_acid_g_usda
7.07
sfa_4_0_butanoic_acid_g_usda
1.18
sfa_6_0_hexanoic_acid_g_usda
0.73
sfa_8_0_octanoic_acid_g_usda
0.53
sodium_mg_usda
2810.17
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.09
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
878.9174271
tnf_beta_pg_ml
0.154169763
total_fat_g_usda
76.94
total_folate_mcg_usda
336.28
total_monounsaturated_fatty_acids_g_usda
27.18
total_polyunsaturated_fatty_acids_g_usda
10.38
total_saturated_fatty_acids_g_usda
32.88
total_sugars_g_usda
77.2
triglycerides
235
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
3
vcam_1_ng_ml
366.9041271
vegf_pg_ml
67.97503172
vitamin_a_rae_mcg_usda
626.37
vitamin_b12_mcg_usda
4.5
vitamin_b6_mg_usda
1.43
vitamin_c_mg_usda
93.76
vitamin_e_as_alpha_tocopherol_mg_usda
5.92
vitamin_k_mcg_usda
141.36
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.53