13338.St.chronic.GLD125.U.b
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617046
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD125.U.b
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
acid_regurgitation_new
1
adiponectin
4.9
alcohol_g_usda
5.03
alpha_carotene_mcg_usda
271.26
beta_carotene_mcg_usda
8395.61
beta_cryptoxanthin_mcg_usda
83.57
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
not collected
caffeine_mg_usda
11.13
calcium_mg_usda
1314.12
carbohydrate_g_usda
250.28
cd4_cd38_single_positive_cells
49
cd4_count
704
cd4_hladr_cd38_percent
13
cd4_hladr_single_positive_cells
2
cd4_nadir
364
cd4_percent
16
cd8_cd38_single_positive_cells
52
cd8_count
2905
cd8_hladr_cd38_percent
35
cd8_hladr_single_positive_cells
1
cd8_percent
66
cholesterol_drugs_1mo
No
cholesterol_mg_usda
214.15
cohort
HIV untreated
collection_timestamp
7/20/16
constipation_24hr_new
NO
copper_mg_usda
2.16
crp_ng_ml
46502.89283
decreased_stools_new
2
dietary_fiber_g_usda
21.58
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1753.16
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1075.97
folic_acid_mcg_usda
395.09
food_folate_mcg_usda
403.86
gender
male
gi_summary_score
1.333333333
glucose
88
gm_csf_pg_ml
0.428800949
gramwt_g_usda
9191.97
hard_stools_new
2
hdl
32
heartburn_new
2
hispanic
No
host age
49
host body habitat
colon
host body mass index
28.6
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV217
host taxid
9606
host weight
89.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
840.2218575
ifabp_pg_ml
3584.997
il_10_pg_ml
326.6084057
il_12_23p40_pg_ml
737.7414479
il_15_pg_ml
3.792606443
il_16_pg_ml
576.4557676
il_17a_pg_ml
5.884391481
il_22_pg_ml
449.9076571
il_6_pg_ml
489.4231461
il_7_pg_ml
14.66525728
increased_flatus_new
1
increased_stools_new
1
insulin
6
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
27.61
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
32896.61654
ldl
114
leptin
12.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
13005.49
lycopene_mcg_usda
2937.47
lymphocyte_count
4401.9
lymphocyte_percent
65.7
magnesium_mg_usda
433.98
mcp_1_pg_ml
9726.728369
metab_disease_score_binary
LOW
metabolic_disease_score
1.371564913
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.89
mfa_18_1_octadecenoic_acid_g_usda
20.32
mfa_20_1_eicosenoic_acid_g_usda
0.15
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.36
mped_add_sug_usda
23.53
mped_dairy_cheese_usda
0.09
mped_dairy_milk_usda
0.36
mped_dairy_total_usda
0.46
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
16.13
mped_discfat_sol_usda
25.94
mped_fruit_citmlb_usda
0.37
mped_fruit_other_usda
0.09
mped_fruit_total_usda
0.47
mped_grain_nwhl_usda
4.35
mped_grain_total_usda
5.83
mped_grain_whl_usda
1.47
mped_legumes_usda
0.05
mped_m_egg_usda
0.66
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0
mped_m_frank_usda
1.14
mped_m_meat_usda
0.94
mped_m_mpf_usda
3.72
mped_m_nutsd_usda
0.36
mped_m_organ_usda
0
mped_m_poult_usda
1.64
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.12
mped_vegetable_drkgr_usda
1.79
mped_vegetable_other_usda
0.22
mped_vegetable_potato_usda
0.14
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.15
mped_vegetable_total_usda
2.46
nadir_date
6/3/16
nadir_report
Medical records report
nadir_years
0.13
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
37.8
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
9.86
pfa_18_3_octadecatrienoic_acig_g_usda
1.07
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.11
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1293.92
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2672.36
probiotics_1wk
No
protein_g_usda
68.12
race
Black/African American
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
856.36
riboflavin_vitamin_b2_mg_usda
3
saa_ng_ml
37395.19155
sample name
qiita_sid_13338:13338.St.chronic.GLD125.U.b
sample type
stool
scd14_pg_ml
1998039.536
scd163_ng_ml
1210.834002
selenium_mcg_usda
90.37
sfa_10_0_decanoic_acid_g_usda
0.28
sfa_12_0_dodecanoic_acid_g_usda
0.43
sfa_14_0_tetradecanoic_acid_g_usda
1.17
sfa_16_0_hexadecanoic_acid_g_usda
9.11
sfa_18_0_octadecanoic_acid_g_usda
4.32
sfa_4_0_butanoic_acid_g_usda
0.33
sfa_6_0_hexanoic_acid_g_usda
0.2
sfa_8_0_octanoic_acid_g_usda
0.15
sodium_mg_usda
3425.77
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.61
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1389.434736
tnf_beta_pg_ml
0.396128114
total_fat_g_usda
54.17
total_folate_mcg_usda
799.93
total_monounsaturated_fatty_acids_g_usda
21.52
total_polyunsaturated_fatty_acids_g_usda
11.34
total_saturated_fatty_acids_g_usda
16.58
total_sugars_g_usda
117.65
triglycerides
103
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
not collected
vcam_1_ng_ml
965.1185489
vegf_pg_ml
98.28447898
viral load
162400
vitamin_a_rae_mcg_usda
1569.97
vitamin_b12_mcg_usda
8.19
vitamin_b6_mg_usda
4.27
vitamin_c_mg_usda
193.61
vitamin_e_as_alpha_tocopherol_mg_usda
16.54
vitamin_k_mcg_usda
698.27
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18