13338.St.chronic.GLD119.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617045
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD119.T
abdominal_distension_new
3
abdominal_pain_24hr_new
YES
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
4.7
alcohol_g_usda
21.72
alpha_carotene_mcg_usda
176.61
art_years
17
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
1777.26
beta_cryptoxanthin_mcg_usda
41.37
bloating_24hr_new
YES
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
935.05
calcium_mg_usda
2275.01
carbohydrate_g_usda
321.93
cd4_cd38_single_positive_cells
61
cd4_count
566
cd4_hladr_cd38_percent
9
cd4_hladr_single_positive_cells
10
cd4_nadir
152
cd4_percent
24
cd8_cd38_single_positive_cells
10
cd8_count
944
cd8_hladr_cd38_percent
7
cd8_hladr_single_positive_cells
14
cd8_percent
40
cholesterol_drugs_1mo
No
cholesterol_mg_usda
152
cohort
HIV treated LD
collection_timestamp
5/27/16
constipation_24hr_new
YES
copper_mg_usda
3.01
crp_ng_ml
10928.68163
current_art
Norvir, combivir, prezista, isentress
current_art_start_date
1/1/07
decreased_stools_new
3
dietary_fiber_g_usda
13.87
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2518.2
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
838.62
folic_acid_mcg_usda
283.81
food_folate_mcg_usda
354.91
gender
male
gi_summary_score
1.785714286
glucose
130
gm_csf_pg_ml
0.392734367
gramwt_g_usda
6859.2
hard_stools_new
3
hdl
35
heartburn_new
2
hispanic
No
host age
64
host body habitat
colon
host body mass index
28.1
host body product
feces
host common name
human
host height
179
host scientific name
Homo sapiens
host subject id
HIV212
host taxid
9606
host weight
90
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
505.2496347
ifabp_pg_ml
1743.209
il_10_pg_ml
231.7258559
il_12_23p40_pg_ml
261.0822811
il_15_pg_ml
5.843213108
il_16_pg_ml
302.5031122
il_17a_pg_ml
4.270471722
il_22_pg_ml
324.5859019
il_6_pg_ml
455.6333
il_7_pg_ml
12.50445919
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1999
insulin
112
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
27.87
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
16179.66903
ldl
137
leptin
4.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2459.64
lycopene_mcg_usda
2227.56
lymphocyte_count
2359.8
lymphocyte_percent
43.7
magnesium_mg_usda
710.15
mcp_1_pg_ml
13215.75366
metab_disease_score_binary
HIGH
metabolic_disease_score
2.246459457
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.51
mfa_18_1_octadecenoic_acid_g_usda
26.94
mfa_20_1_eicosenoic_acid_g_usda
0.19
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.54
mped_add_sug_usda
33.43
mped_dairy_cheese_usda
0.08
mped_dairy_milk_usda
2.8
mped_dairy_total_usda
2.92
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
41.56
mped_discfat_sol_usda
32.51
mped_fruit_citmlb_usda
0.08
mped_fruit_other_usda
1.13
mped_fruit_total_usda
1.22
mped_grain_nwhl_usda
3.27
mped_grain_total_usda
3.55
mped_grain_whl_usda
0.28
mped_legumes_usda
0.03
mped_m_egg_usda
0.35
mped_m_fish_hi_usda
0.14
mped_m_fish_lo_usda
0.12
mped_m_frank_usda
0.17
mped_m_meat_usda
0.39
mped_m_mpf_usda
1.34
mped_m_nutsd_usda
1.26
mped_m_organ_usda
0
mped_m_poult_usda
0.5
mped_m_soy_usda
0.24
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.36
mped_vegetable_other_usda
0.47
mped_vegetable_potato_usda
0.6
mped_vegetable_starcy_usda
0.02
mped_vegetable_tomato_usda
0.1
mped_vegetable_total_usda
1.58
nadir_date
1/1/07
nadir_report
Patient report
nadir_years
9.4
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
48.89
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
20.15
pfa_18_3_octadecatrienoic_acig_g_usda
1.59
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.05
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
1982.12
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
5453.09
probiotics_1wk
No
protein_g_usda
88.57
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
2691.29
riboflavin_vitamin_b2_mg_usda
5.76
saa_ng_ml
46617.51454
sample name
qiita_sid_13338:13338.St.chronic.GLD119.T
sample type
stool
scd14_pg_ml
1747020.165
scd163_ng_ml
703.5240558
selenium_mcg_usda
84.64
sfa_10_0_decanoic_acid_g_usda
0.52
sfa_12_0_dodecanoic_acid_g_usda
0.68
sfa_14_0_tetradecanoic_acid_g_usda
1.64
sfa_16_0_hexadecanoic_acid_g_usda
12.82
sfa_18_0_octadecanoic_acid_g_usda
5.74
sfa_4_0_butanoic_acid_g_usda
0.43
sfa_6_0_hexanoic_acid_g_usda
0.32
sfa_8_0_octanoic_acid_g_usda
0.51
sodium_mg_usda
2764.84
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.29
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
698.9895163
tnf_beta_pg_ml
0.303014081
total_fat_g_usda
87.62
total_folate_mcg_usda
638.51
total_monounsaturated_fatty_acids_g_usda
28.63
total_polyunsaturated_fatty_acids_g_usda
22.08
total_saturated_fatty_acids_g_usda
23.32
total_sugars_g_usda
194.41
triglycerides
220
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
573.3915559
vegf_pg_ml
80.59470958
viral load
10
vitamin_a_rae_mcg_usda
2847.6
vitamin_b12_mcg_usda
8.13
vitamin_b6_mg_usda
4.64
vitamin_c_mg_usda
189.94
vitamin_e_as_alpha_tocopherol_mg_usda
20.15
vitamin_k_mcg_usda
272.94
watery_diarrhea_24hr_new
NO
zinc_mg_usda
19.63