13338.St.chronic.GLD037.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617028
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD037.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
PCN
acid_regurgitation_new
1
adiponectin
4.1
alcohol_g_usda
26.09
alpha_carotene_mcg_usda
696.94
art_years
14
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2502.04
beta_cryptoxanthin_mcg_usda
114.57
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
513.8
calcium_mg_usda
836.24
carbohydrate_g_usda
183.5
cd4_cd38_single_positive_cells
60
cd4_count
659
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
2
cd4_nadir
not collected
cd4_percent
24
cd8_cd38_single_positive_cells
23
cd8_count
871
cd8_hladr_cd38_percent
3
cd8_hladr_single_positive_cells
3
cd8_percent
37
cholesterol_drugs_1mo
No
cholesterol_mg_usda
539.82
cohort
HIV treated LD
collection_timestamp
10/7/15
constipation_24hr_new
NO
copper_mg_usda
1.25
crp_ng_ml
13288.97511
current_art
Truvada & Isentress
current_art_start_date
1/1/12
decreased_stools_new
1
dietary_fiber_g_usda
13.69
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1836.82
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
439.67
folic_acid_mcg_usda
105.51
food_folate_mcg_usda
260.43
gender
male
gi_summary_score
1.071428571
glucose
105
gm_csf_pg_ml
0.223718308
gramwt_g_usda
4556.9
hard_stools_new
1
hdl
43
heartburn_new
1
hispanic
No
host age
57
host body habitat
colon
host body mass index
23.6
host body product
feces
host common name
human
host height
195
host scientific name
Homo sapiens
host subject id
HIV041
host taxid
9606
host weight
89.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
689.5889412
ifabp_pg_ml
1980.019
il_10_pg_ml
257.6125557
il_12_23p40_pg_ml
170.3258584
il_15_pg_ml
3.301994653
il_16_pg_ml
820.6380291
il_17a_pg_ml
2.766155276
il_22_pg_ml
449.7295275
il_6_pg_ml
650.3338522
il_7_pg_ml
17.10576141
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
2001
insulin
8
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.85
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
32191.72932
ldl
97
leptin
5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1547
lycopene_mcg_usda
6575.2
lymphocyte_count
2353
lymphocyte_percent
36.2
magnesium_mg_usda
300.1
mcp_1_pg_ml
5634.742899
metab_disease_score_binary
LOW
metabolic_disease_score
1.346978315
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.28
mfa_18_1_octadecenoic_acid_g_usda
25.96
mfa_20_1_eicosenoic_acid_g_usda
0.25
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
Yes
mped_a_bev_usda
1.98
mped_add_sug_usda
6.76
mped_dairy_cheese_usda
1.12
mped_dairy_milk_usda
0.14
mped_dairy_total_usda
1.48
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
16.24
mped_discfat_sol_usda
40.33
mped_fruit_citmlb_usda
0.3
mped_fruit_other_usda
1.14
mped_fruit_total_usda
1.44
mped_grain_nwhl_usda
4.99
mped_grain_total_usda
5.18
mped_grain_whl_usda
0.19
mped_legumes_usda
0.05
mped_m_egg_usda
2.05
mped_m_fish_hi_usda
0.05
mped_m_fish_lo_usda
0.19
mped_m_frank_usda
0.43
mped_m_meat_usda
0.74
mped_m_mpf_usda
1.91
mped_m_nutsd_usda
1.41
mped_m_organ_usda
0
mped_m_poult_usda
0.5
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.15
mped_vegetable_drkgr_usda
0.11
mped_vegetable_other_usda
0.37
mped_vegetable_potato_usda
0.17
mped_vegetable_starcy_usda
0.03
mped_vegetable_tomato_usda
0.48
mped_vegetable_total_usda
1.31
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
19.23
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.24
pfa_18_3_octadecatrienoic_acig_g_usda
1.06
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.07
phosphorus_mg_usda
1152.53
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2873.74
probiotics_1wk
yogurt
protein_g_usda
69.75
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
370.23
riboflavin_vitamin_b2_mg_usda
2.65
saa_ng_ml
21808.9734
sample name
qiita_sid_13338:13338.St.chronic.GLD037.T
sample type
stool
scd14_pg_ml
1015173.073
scd163_ng_ml
1132.191536
selenium_mcg_usda
97.27
sfa_10_0_decanoic_acid_g_usda
0.43
sfa_12_0_dodecanoic_acid_g_usda
0.73
sfa_14_0_tetradecanoic_acid_g_usda
2.23
sfa_16_0_hexadecanoic_acid_g_usda
13.66
sfa_18_0_octadecanoic_acid_g_usda
5.82
sfa_4_0_butanoic_acid_g_usda
0.62
sfa_6_0_hexanoic_acid_g_usda
0.29
sfa_8_0_octanoic_acid_g_usda
0.24
sodium_mg_usda
2856.44
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.21
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
861.0555183
tnf_beta_pg_ml
0.145959807
total_fat_g_usda
75.67
total_folate_mcg_usda
366
total_monounsaturated_fatty_acids_g_usda
27.88
total_polyunsaturated_fatty_acids_g_usda
13.65
total_saturated_fatty_acids_g_usda
25.04
total_sugars_g_usda
68.61
triglycerides
96
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
744.0758724
vegf_pg_ml
266.6635332
viral load
20
vitamin_a_rae_mcg_usda
613.01
vitamin_b12_mcg_usda
3.56
vitamin_b6_mg_usda
1.74
vitamin_c_mg_usda
67.74
vitamin_e_as_alpha_tocopherol_mg_usda
6.9
vitamin_k_mcg_usda
80.85
watery_diarrhea_24hr_new
NO
zinc_mg_usda
8.86