13338.St.chronic.GLD048.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617032
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD048.U
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
11.5
alcohol_g_usda
45.44
alpha_carotene_mcg_usda
278.18
beta_carotene_mcg_usda
679.59
beta_cryptoxanthin_mcg_usda
34.91
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
not collected
caffeine_mg_usda
126.61
calcium_mg_usda
689.82
carbohydrate_g_usda
128.6
cd4_cd38_single_positive_cells
69
cd4_count
291
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
0
cd4_nadir
241
cd4_percent
21
cd8_cd38_single_positive_cells
50
cd8_count
678
cd8_hladr_cd38_percent
31
cd8_hladr_single_positive_cells
1
cd8_percent
49
cholesterol_drugs_1mo
No
cholesterol_mg_usda
237.56
cohort
HIV untreated
collection_timestamp
11/3/15
constipation_24hr_new
YES
copper_mg_usda
1.04
crp_ng_ml
6457.049472
decreased_stools_new
1
dietary_fiber_g_usda
8.59
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1463.7
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
425.6
folic_acid_mcg_usda
146.71
food_folate_mcg_usda
176.06
gender
male
gi_summary_score
1.142857143
glucose
88
gm_csf_pg_ml
0.202184476
gramwt_g_usda
3746.32
hard_stools_new
1
hdl
40
heartburn_new
2
hispanic
No
host age
23
host body habitat
colon
host body mass index
20.2
host body product
feces
host common name
human
host height
190
host scientific name
Homo sapiens
host subject id
HIV125
host taxid
9606
host weight
73
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
543.8663589
ifabp_pg_ml
2031.077
il_10_pg_ml
986.4476968
il_12_23p40_pg_ml
339.0057815
il_15_pg_ml
4.250903007
il_16_pg_ml
440.0456942
il_17a_pg_ml
2.982903533
il_22_pg_ml
447.9841194
il_6_pg_ml
326.3451981
il_7_pg_ml
8.664768663
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
3
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.46
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
7199.324324
ldl
78
leptin
2.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
351.02
lycopene_mcg_usda
1094.53
lymphocyte_count
1383.8
lymphocyte_percent
37.4
magnesium_mg_usda
286.95
mcp_1_pg_ml
9153.442107
metab_disease_score_binary
LOW
metabolic_disease_score
1.066349118
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.43
mfa_18_1_octadecenoic_acid_g_usda
22.18
mfa_20_1_eicosenoic_acid_g_usda
0.37
mfa_22_1_docosenoic_acid_g_usda
0
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
3.39
mped_add_sug_usda
9.25
mped_dairy_cheese_usda
0.12
mped_dairy_milk_usda
1.19
mped_dairy_total_usda
1.31
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
24.9
mped_discfat_sol_usda
13.66
mped_fruit_citmlb_usda
0.1
mped_fruit_other_usda
0.16
mped_fruit_total_usda
0.26
mped_grain_nwhl_usda
1.67
mped_grain_total_usda
2.26
mped_grain_whl_usda
0.58
mped_legumes_usda
0.01
mped_m_egg_usda
0.96
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.02
mped_m_frank_usda
0.03
mped_m_meat_usda
0.16
mped_m_mpf_usda
0.34
mped_m_nutsd_usda
3.86
mped_m_organ_usda
0
mped_m_poult_usda
0.13
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.02
mped_vegetable_other_usda
0.03
mped_vegetable_potato_usda
0.05
mped_vegetable_starcy_usda
0
mped_vegetable_tomato_usda
0.05
mped_vegetable_total_usda
0.18
nadir_date
10/15/15
nadir_report
Medical records report
nadir_years
0.05
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
29.95
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.59
pfa_18_3_octadecatrienoic_acig_g_usda
0.47
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.08
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
902.58
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1685.84
probiotics_1wk
No
protein_g_usda
45.27
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
421.42
riboflavin_vitamin_b2_mg_usda
2.32
saa_ng_ml
5085.28507
sample name
qiita_sid_13338:13338.St.chronic.GLD048.U
sample type
stool
scd14_pg_ml
1760252.267
scd163_ng_ml
1428.948351
selenium_mcg_usda
52.6
sfa_10_0_decanoic_acid_g_usda
0.17
sfa_12_0_dodecanoic_acid_g_usda
0.26
sfa_14_0_tetradecanoic_acid_g_usda
0.82
sfa_16_0_hexadecanoic_acid_g_usda
8.02
sfa_18_0_octadecanoic_acid_g_usda
2.9
sfa_4_0_butanoic_acid_g_usda
0.26
sfa_6_0_hexanoic_acid_g_usda
0.13
sfa_8_0_octanoic_acid_g_usda
0.08
sodium_mg_usda
1454.37
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.96
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
900.8465356
tnf_beta_pg_ml
0.305034198
total_fat_g_usda
54.46
total_folate_mcg_usda
322.79
total_monounsaturated_fatty_acids_g_usda
23.08
total_polyunsaturated_fatty_acids_g_usda
13.23
total_saturated_fatty_acids_g_usda
14.08
total_sugars_g_usda
62.29
triglycerides
56
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
935.5527503
vegf_pg_ml
69.75017361
viral load
62800
vitamin_a_rae_mcg_usda
491.15
vitamin_b12_mcg_usda
5.84
vitamin_b6_mg_usda
2.76
vitamin_c_mg_usda
30.67
vitamin_e_as_alpha_tocopherol_mg_usda
8.58
vitamin_k_mcg_usda
26.72
watery_diarrhea_24hr_new
NO
zinc_mg_usda
7.84