13338.St.neg.GLD086
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617095
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:20Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD086
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7.6
alcohol_g_usda
3.47
alpha_carotene_mcg_usda
755.13
beta_carotene_mcg_usda
6573.27
beta_cryptoxanthin_mcg_usda
157.82
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
57.76
calcium_mg_usda
891.91
carbohydrate_g_usda
144.51
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
117.76
cohort
HIV negative MSW
collection_timestamp
3/22/16
constipation_24hr_new
NO
copper_mg_usda
1.21
crp_ng_ml
814.9285085
decreased_stools_new
1
dietary_fiber_g_usda
18.33
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1211.53
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
566.6
folic_acid_mcg_usda
157.47
food_folate_mcg_usda
298.88
gender
male
gi_summary_score
1.071428571
glucose
91
gm_csf_pg_ml
0.162054545
gramwt_g_usda
4569.87
hard_stools_new
1
hdl
44
heartburn_new
1
hispanic
No
host age
39
host body habitat
colon
host body mass index
26.3
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV187
host taxid
9606
host weight
77.8
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
262.0354522
ifabp_pg_ml
1402.738
il_10_pg_ml
201.5429111
il_12_23p40_pg_ml
146.0204592
il_15_pg_ml
4.257960662
il_16_pg_ml
544.1304188
il_17a_pg_ml
1.810531848
il_22_pg_ml
316.4944931
il_6_pg_ml
254.7508484
il_7_pg_ml
6.575981384
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
14.1
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8491.554054
ldl
86
leptin
2.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
8351.98
lycopene_mcg_usda
6561.75
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
297.09
mcp_1_pg_ml
8759.265895
metab_disease_score_binary
LOW
metabolic_disease_score
1.098445175
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.87
mfa_18_1_octadecenoic_acid_g_usda
21.07
mfa_20_1_eicosenoic_acid_g_usda
0.17
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.26
mped_add_sug_usda
5.46
mped_dairy_cheese_usda
0.36
mped_dairy_milk_usda
0.54
mped_dairy_total_usda
0.95
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
15.88
mped_discfat_sol_usda
22.99
mped_fruit_citmlb_usda
0.59
mped_fruit_other_usda
0.9
mped_fruit_total_usda
1.49
mped_grain_nwhl_usda
1.91
mped_grain_total_usda
2.59
mped_grain_whl_usda
0.68
mped_legumes_usda
0.2
mped_m_egg_usda
0.16
mped_m_fish_hi_usda
0.1
mped_m_fish_lo_usda
0.02
mped_m_frank_usda
0.64
mped_m_meat_usda
1.38
mped_m_mpf_usda
2.45
mped_m_nutsd_usda
0.72
mped_m_organ_usda
0
mped_m_poult_usda
0.31
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.82
mped_vegetable_other_usda
0.5
mped_vegetable_potato_usda
0.26
mped_vegetable_starcy_usda
0.07
mped_vegetable_tomato_usda
0.55
mped_vegetable_total_usda
2.35
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
15.96
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
8.45
pfa_18_3_octadecatrienoic_acig_g_usda
0.88
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.05
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.03
phosphorus_mg_usda
824.56
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2400.71
probiotics_1wk
No
protein_g_usda
47.73
race
White
rai_frequency_new
Never
relationship_status_new
In a relationship but not living together
retinol_mcg_usda
250.95
riboflavin_vitamin_b2_mg_usda
1.52
saa_ng_ml
1098.708705
sample name
qiita_sid_13338:13338.St.neg.GLD086
sample type
stool
scd14_pg_ml
1505596.482
scd163_ng_ml
620.0473667
selenium_mcg_usda
53.94
sfa_10_0_decanoic_acid_g_usda
0.18
sfa_12_0_dodecanoic_acid_g_usda
0.22
sfa_14_0_tetradecanoic_acid_g_usda
1.07
sfa_16_0_hexadecanoic_acid_g_usda
8.52
sfa_18_0_octadecanoic_acid_g_usda
3.66
sfa_4_0_butanoic_acid_g_usda
0.26
sfa_6_0_hexanoic_acid_g_usda
0.13
sfa_8_0_octanoic_acid_g_usda
0.08
sodium_mg_usda
2040.88
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.13
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
800.279728
tnf_beta_pg_ml
0.130373317
total_fat_g_usda
50.55
total_folate_mcg_usda
456.33
total_monounsaturated_fatty_acids_g_usda
22.36
total_polyunsaturated_fatty_acids_g_usda
9.55
total_saturated_fatty_acids_g_usda
14.66
total_sugars_g_usda
60.4
triglycerides
66
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
548.5778335
vegf_pg_ml
48.34539458
vitamin_a_rae_mcg_usda
837.12
vitamin_b12_mcg_usda
3.88
vitamin_b6_mg_usda
1.76
vitamin_c_mg_usda
129.67
vitamin_e_as_alpha_tocopherol_mg_usda
7.49
vitamin_k_mcg_usda
408.62
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.79