13338.St.neg.DM037.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617065
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:17Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM037.1
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
11.6
alcohol_g_usda
3.33
alpha_carotene_mcg_usda
48.35
beta_carotene_mcg_usda
632.98
beta_cryptoxanthin_mcg_usda
384.14
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
173.3
calcium_mg_usda
1889.65
carbohydrate_g_usda
210.5
cd4_cd38_single_positive_cells
69
cd4_count
not collected
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
1
cd4_percent
not collected
cd8_cd38_single_positive_cells
21
cd8_count
not collected
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
3
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
478.8
cohort
HIV negative MSM
collection_timestamp
3/1/17
constipation_24hr_new
NO
copper_mg_usda
1.51
crp_ng_ml
649.3563559
decreased_stools_new
1
dietary_fiber_g_usda
11.09
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1743.11
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
525.92
folic_acid_mcg_usda
134.01
food_folate_mcg_usda
297.71
gender
male
gi_summary_score
1.153846154
glucose
111
gm_csf_pg_ml
0.234706129
gramwt_g_usda
4405.77
hard_stools_new
2
hdl
31
heartburn_new
1
hispanic
No
host age
47
host body habitat
colon
host body mass index
25.8
host body product
feces
host common name
human
host height
180.4
host scientific name
Homo sapiens
host subject id
HIV266
host taxid
9606
host weight
84.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
164.6539702
ifabp_pg_ml
2471.426
il_10_pg_ml
244.0238111
il_12_23p40_pg_ml
115.0926221
il_15_pg_ml
3.560950097
il_16_pg_ml
321.8992678
il_17a_pg_ml
2.291081738
il_22_pg_ml
224.9791202
il_6_pg_ml
274.9872153
il_7_pg_ml
9.289244901
incomplete_evacuation_new
1
increased_flatus_new
1
insulin
24
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
13.4
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
7267.13948
ldl
121
leptin
9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1215
lycopene_mcg_usda
1403.61
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
362.86
mcp_1_pg_ml
8931.848542
metab_disease_score_binary
HIGH
metabolic_disease_score
1.517724955
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1
mfa_18_1_octadecenoic_acid_g_usda
19.94
mfa_20_1_eicosenoic_acid_g_usda
0.19
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.24
mped_add_sug_usda
13.01
mped_dairy_cheese_usda
0.31
mped_dairy_milk_usda
3.54
mped_dairy_total_usda
3.87
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
13.13
mped_discfat_sol_usda
35.76
mped_fruit_citmlb_usda
1.28
mped_fruit_other_usda
0.54
mped_fruit_total_usda
1.82
mped_grain_nwhl_usda
2.15
mped_grain_total_usda
2.29
mped_grain_whl_usda
0.14
mped_legumes_usda
0.31
mped_m_egg_usda
1.49
mped_m_fish_hi_usda
0.17
mped_m_fish_lo_usda
0.21
mped_m_frank_usda
1.09
mped_m_meat_usda
0.23
mped_m_mpf_usda
3.36
mped_m_nutsd_usda
0.05
mped_m_organ_usda
0
mped_m_poult_usda
1.67
mped_m_soy_usda
0.05
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0.12
mped_vegetable_other_usda
0.18
mped_vegetable_potato_usda
0.13
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.1
mped_vegetable_total_usda
0.55
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
22.44
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.97
pfa_18_3_octadecatrienoic_acig_g_usda
1.33
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.08
phosphorus_mg_usda
1681.59
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3617.73
probiotics_1wk
not collected
protein_g_usda
86.53
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
1153.14
riboflavin_vitamin_b2_mg_usda
3.31
saa_ng_ml
1205.159899
sample name
qiita_sid_13338:13338.St.neg.DM037.1
sample type
stool
scd14_pg_ml
1560961.31
scd163_ng_ml
605.7114111
selenium_mcg_usda
96.76
sfa_10_0_decanoic_acid_g_usda
0.63
sfa_12_0_dodecanoic_acid_g_usda
0.7
sfa_14_0_tetradecanoic_acid_g_usda
2.39
sfa_16_0_hexadecanoic_acid_g_usda
12.03
sfa_18_0_octadecanoic_acid_g_usda
4.94
sfa_4_0_butanoic_acid_g_usda
0.88
sfa_6_0_hexanoic_acid_g_usda
0.49
sfa_8_0_octanoic_acid_g_usda
0.34
sodium_mg_usda
2352.69
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.59
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
565.6921594
tnf_beta_pg_ml
0.216146213
total_fat_g_usda
60.8
total_folate_mcg_usda
431.55
total_monounsaturated_fatty_acids_g_usda
21.42
total_polyunsaturated_fatty_acids_g_usda
10.74
total_saturated_fatty_acids_g_usda
23.01
total_sugars_g_usda
133.27
triglycerides
61
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
272.5941186
vegf_pg_ml
84.81987454
vitamin_a_rae_mcg_usda
1223.23
vitamin_b12_mcg_usda
7.28
vitamin_b6_mg_usda
2.45
vitamin_c_mg_usda
172.2
vitamin_e_as_alpha_tocopherol_mg_usda
7.86
vitamin_k_mcg_usda
88.8
watery_diarrhea_24hr_new
NO
zinc_mg_usda
12.24