13338.St.chronic.GLD130.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617048
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD130.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3.2
alcohol_g_usda
2.83
alpha_carotene_mcg_usda
368.38
art_years
24
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
YES
arv_pi
NO
beta_carotene_mcg_usda
3039.65
beta_cryptoxanthin_mcg_usda
262.88
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
266.32
calcium_mg_usda
1515.32
carbohydrate_g_usda
408.39
cd4_cd38_single_positive_cells
68
cd4_count
802
cd4_hladr_cd38_percent
6
cd4_hladr_single_positive_cells
4
cd4_nadir
200
cd4_percent
27
cd8_cd38_single_positive_cells
31
cd8_count
1603
cd8_hladr_cd38_percent
10
cd8_hladr_single_positive_cells
6
cd8_percent
54
cholesterol_drugs_1mo
No
cholesterol_mg_usda
460.27
cohort
HIV treated LD
collection_timestamp
7/14/16
constipation_24hr_new
NO
copper_mg_usda
2.25
crp_ng_ml
1774.886505
current_art
Genvoya
current_art_start_date
12/11/15
decreased_stools_new
1
dietary_fiber_g_usda
22.81
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3182.75
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
765.31
folic_acid_mcg_usda
245.71
food_folate_mcg_usda
347.37
gender
male
gi_summary_score
1.142857143
glucose
110
gm_csf_pg_ml
6.82350364
gramwt_g_usda
10779.9
hard_stools_new
1
hdl
29
heartburn_new
1
hispanic
No
host age
65
host body habitat
colon
host body mass index
24.3
host body product
feces
host common name
human
host height
174
host scientific name
Homo sapiens
host subject id
HIV230
host taxid
9606
host weight
73.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
375.4127281
ifabp_pg_ml
1561.84
il_10_pg_ml
297.5146377
il_12_23p40_pg_ml
289.6061593
il_15_pg_ml
3.646765295
il_16_pg_ml
693.902665
il_17a_pg_ml
7.683979934
il_22_pg_ml
540.674805
il_6_pg_ml
401.4672778
il_7_pg_ml
9.738358611
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
initial_art_start_date
1992
insulin
30
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
20.26
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5991.554054
ldl
80
leptin
10
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2604.03
lycopene_mcg_usda
4225.27
lymphocyte_count
2968.4
lymphocyte_percent
36.2
magnesium_mg_usda
480.96
mcp_1_pg_ml
11710.4682
metab_disease_score_binary
HIGH
metabolic_disease_score
1.766192075
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.96
mfa_18_1_octadecenoic_acid_g_usda
47.74
mfa_20_1_eicosenoic_acid_g_usda
0.39
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.2
mped_add_sug_usda
46.78
mped_dairy_cheese_usda
0.89
mped_dairy_milk_usda
0.7
mped_dairy_total_usda
1.61
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
39.69
mped_discfat_sol_usda
69.45
mped_fruit_citmlb_usda
0.76
mped_fruit_other_usda
1.03
mped_fruit_total_usda
1.78
mped_grain_nwhl_usda
5.34
mped_grain_total_usda
6.41
mped_grain_whl_usda
1.07
mped_legumes_usda
0.08
mped_m_egg_usda
1.06
mped_m_fish_hi_usda
0.23
mped_m_fish_lo_usda
0.44
mped_m_frank_usda
1.3
mped_m_meat_usda
2.38
mped_m_mpf_usda
4.97
mped_m_nutsd_usda
2.2
mped_m_organ_usda
0.01
mped_m_poult_usda
0.6
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
0.52
mped_vegetable_other_usda
0.55
mped_vegetable_potato_usda
0.61
mped_vegetable_starcy_usda
0.09
mped_vegetable_tomato_usda
0.24
mped_vegetable_total_usda
2.09
nadir_date
1/1/95
nadir_report
Patient report
nadir_years
21.53
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
29.44
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
22.32
pfa_18_3_octadecatrienoic_acig_g_usda
2.22
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.16
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1624.57
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3683.56
probiotics_1wk
No
protein_g_usda
98.09
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
544.02
riboflavin_vitamin_b2_mg_usda
2.79
saa_ng_ml
3407.528681
sample name
qiita_sid_13338:13338.St.chronic.GLD130.T
sample type
stool
scd14_pg_ml
1795993.43
scd163_ng_ml
725.6997402
selenium_mcg_usda
141.13
sfa_10_0_decanoic_acid_g_usda
1.01
sfa_12_0_dodecanoic_acid_g_usda
1.52
sfa_14_0_tetradecanoic_acid_g_usda
4.39
sfa_16_0_hexadecanoic_acid_g_usda
24.41
sfa_18_0_octadecanoic_acid_g_usda
11.11
sfa_4_0_butanoic_acid_g_usda
1.28
sfa_6_0_hexanoic_acid_g_usda
0.76
sfa_8_0_octanoic_acid_g_usda
0.58
sodium_mg_usda
4279.85
statin_type
crestor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
2.22
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1032.014244
tnf_beta_pg_ml
0.119489643
total_fat_g_usda
134.31
total_folate_mcg_usda
593.02
total_monounsaturated_fatty_acids_g_usda
51.1
total_polyunsaturated_fatty_acids_g_usda
25.02
total_saturated_fatty_acids_g_usda
46.5
total_sugars_g_usda
172.28
triglycerides
189
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
536.6364631
vegf_pg_ml
90.69208049
viral load
0
vitamin_a_rae_mcg_usda
823.37
vitamin_b12_mcg_usda
6.16
vitamin_b6_mg_usda
2.5
vitamin_c_mg_usda
156.81
vitamin_e_as_alpha_tocopherol_mg_usda
12.55
vitamin_k_mcg_usda
196.02
watery_diarrhea_24hr_new
NO
zinc_mg_usda
17.42