13338.St.chronic.GLD073.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617037
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD073.U
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
pencillin
acid_regurgitation_new
1
adiponectin
10.6
alcohol_g_usda
204.43
alpha_carotene_mcg_usda
2081.18
beta_carotene_mcg_usda
8669.1
beta_cryptoxanthin_mcg_usda
138.7
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
4
caffeine_mg_usda
113.84
calcium_mg_usda
1410.39
carbohydrate_g_usda
353.51
cd4_cd38_single_positive_cells
35
cd4_count
766.64
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
1
cd4_nadir
766.64
cd4_percent
37
cd8_cd38_single_positive_cells
30
cd8_count
911.68
cd8_hladr_cd38_percent
51
cd8_hladr_single_positive_cells
1
cd8_percent
44
cholesterol_drugs_1mo
No
cholesterol_mg_usda
309.15
cohort
HIV untreated
collection_timestamp
2/11/16
constipation_24hr_new
NO
copper_mg_usda
2.35
crp_ng_ml
not collected
decreased_stools_new
1
dietary_fiber_g_usda
17.41
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
4099.35
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
801.51
folic_acid_mcg_usda
108.17
food_folate_mcg_usda
617.73
gender
male
gi_summary_score
1.5
glucose
80
gm_csf_pg_ml
not collected
gramwt_g_usda
10524.38
hard_stools_new
1
hdl
74
heartburn_new
1
hispanic
No
host age
38
host body habitat
colon
host body mass index
21.7
host body product
feces
host common name
human
host height
186
host scientific name
Homo sapiens
host subject id
HIV130
host taxid
9606
host weight
75.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
15.7
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
60
leptin
2.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
4904.84
lycopene_mcg_usda
37738.8
lymphocyte_count
2072
lymphocyte_percent
51.8
magnesium_mg_usda
613.12
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
0.629028944
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.88
mfa_18_1_octadecenoic_acid_g_usda
34.74
mfa_20_1_eicosenoic_acid_g_usda
0.31
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
16.05
mped_add_sug_usda
13.83
mped_dairy_cheese_usda
1.86
mped_dairy_milk_usda
0.26
mped_dairy_total_usda
2.15
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
23.79
mped_discfat_sol_usda
59.36
mped_fruit_citmlb_usda
0.55
mped_fruit_other_usda
0.51
mped_fruit_total_usda
1.06
mped_grain_nwhl_usda
4.33
mped_grain_total_usda
4.76
mped_grain_whl_usda
0.43
mped_legumes_usda
0.08
mped_m_egg_usda
0.36
mped_m_fish_hi_usda
0.22
mped_m_fish_lo_usda
0.56
mped_m_frank_usda
0.64
mped_m_meat_usda
2.2
mped_m_mpf_usda
4.78
mped_m_nutsd_usda
0.36
mped_m_organ_usda
0.01
mped_m_poult_usda
1.15
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.26
mped_vegetable_drkgr_usda
0.39
mped_vegetable_other_usda
0.6
mped_vegetable_potato_usda
0.35
mped_vegetable_starcy_usda
0.14
mped_vegetable_tomato_usda
1.8
mped_vegetable_total_usda
3.53
nadir_date
2/11/16
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
46.72
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
14.12
pfa_18_3_octadecatrienoic_acig_g_usda
1.98
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.13
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.08
phosphorus_mg_usda
2029.13
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4476.26
probiotics_1wk
No
protein_g_usda
103.42
race
Black/African American
rai_frequency_new
< 1 time per week
relationship_status_new
In a relationship but not living together
retinol_mcg_usda
423.52
riboflavin_vitamin_b2_mg_usda
3.08
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.chronic.GLD073.U
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
138.39
sfa_10_0_decanoic_acid_g_usda
0.82
sfa_12_0_dodecanoic_acid_g_usda
0.9
sfa_14_0_tetradecanoic_acid_g_usda
4.01
sfa_16_0_hexadecanoic_acid_g_usda
19.26
sfa_18_0_octadecanoic_acid_g_usda
8.58
sfa_4_0_butanoic_acid_g_usda
1.22
sfa_6_0_hexanoic_acid_g_usda
0.63
sfa_8_0_octanoic_acid_g_usda
0.42
sodium_mg_usda
4628.55
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
1.77
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
99.05
total_folate_mcg_usda
725.72
total_monounsaturated_fatty_acids_g_usda
37.58
total_polyunsaturated_fatty_acids_g_usda
16.67
total_saturated_fatty_acids_g_usda
37.17
total_sugars_g_usda
108.22
triglycerides
109
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
2
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
viral load
522935
vitamin_a_rae_mcg_usda
1239.7
vitamin_b12_mcg_usda
6.14
vitamin_b6_mg_usda
4.23
vitamin_c_mg_usda
190.03
vitamin_e_as_alpha_tocopherol_mg_usda
8.94
vitamin_k_mcg_usda
303.72
watery_diarrhea_24hr_new
NO
zinc_mg_usda
13.9