13338.St.chronic.GLD144
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617053
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD144
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
No
acid_regurgitation_new
not collected
adiponectin
13.6
alcohol_g_usda
21.91
alpha_carotene_mcg_usda
44.52
beta_carotene_mcg_usda
773.66
beta_cryptoxanthin_mcg_usda
48.85
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
204.95
calcium_mg_usda
2338.95
carbohydrate_g_usda
505.45
cd4_cd38_single_positive_cells
78
cd4_count
792
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
1
cd4_nadir
545
cd4_percent
33
cd8_cd38_single_positive_cells
57
cd8_count
1057
cd8_hladr_cd38_percent
23
cd8_hladr_single_positive_cells
1
cd8_percent
44
cholesterol_drugs_1mo
No
cholesterol_mg_usda
230.4
cohort
HIV untreated
collection_timestamp
1/11/17
constipation_24hr_new
NO
copper_mg_usda
1.27
crp_ng_ml
978.9549669
decreased_stools_new
not collected
dietary_fiber_g_usda
15.77
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3340.77
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1044.49
folic_acid_mcg_usda
497.93
food_folate_mcg_usda
198.17
gender
male
gi_summary_score
not collected
glucose
75
gm_csf_pg_ml
0.382535772
gramwt_g_usda
4784.24
hard_stools_new
not collected
hdl
43
heartburn_new
not collected
hispanic
No
host age
26
host body habitat
colon
host body mass index
20.3
host body product
feces
host common name
human
host height
180
host scientific name
Homo sapiens
host subject id
HIV257
host taxid
9606
host weight
65.7
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
618.0362981
ifabp_pg_ml
1624.335
il_10_pg_ml
445.9449087
il_12_23p40_pg_ml
366.3656632
il_15_pg_ml
4.98592656
il_16_pg_ml
242.0796894
il_17a_pg_ml
4.296546947
il_22_pg_ml
181.7722392
il_6_pg_ml
319.5695282
il_7_pg_ml
10.78781155
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
insulin
6
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
28.8
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11747.04492
ldl
133
leptin
5.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
878.24
lycopene_mcg_usda
4600.04
lymphocyte_count
2401.2
lymphocyte_percent
26.1
magnesium_mg_usda
391.55
mcp_1_pg_ml
4543.79755
metab_disease_score_binary
LOW
metabolic_disease_score
1.218638082
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.91
mfa_18_1_octadecenoic_acid_g_usda
30.08
mfa_20_1_eicosenoic_acid_g_usda
0.3
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.68
mped_add_sug_usda
66.42
mped_dairy_cheese_usda
1.97
mped_dairy_milk_usda
4.29
mped_dairy_total_usda
6.27
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
12.42
mped_discfat_sol_usda
65.17
mped_fruit_citmlb_usda
0.13
mped_fruit_other_usda
1.48
mped_fruit_total_usda
1.61
mped_grain_nwhl_usda
4.1
mped_grain_total_usda
5.62
mped_grain_whl_usda
1.52
mped_legumes_usda
0.01
mped_m_egg_usda
0.05
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.07
mped_m_frank_usda
1.17
mped_m_meat_usda
0.59
mped_m_mpf_usda
2.16
mped_m_nutsd_usda
1.42
mped_m_organ_usda
0
mped_m_poult_usda
0.32
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.01
mped_vegetable_drkgr_usda
0.15
mped_vegetable_other_usda
0.17
mped_vegetable_potato_usda
0.02
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.24
mped_vegetable_total_usda
0.6
nadir_date
12/16/15
nadir_report
Medical records report
nadir_years
1.07
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
Yes
niacin_mg_usda
31.18
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.42
pfa_18_3_octadecatrienoic_acig_g_usda
1.01
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.04
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
2458.07
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3407.29
probiotics_1wk
not collected
protein_g_usda
104.97
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1286.45
riboflavin_vitamin_b2_mg_usda
4.54
saa_ng_ml
2347.713825
sample name
qiita_sid_13338:13338.St.chronic.GLD144
sample type
stool
scd14_pg_ml
2256869.757
scd163_ng_ml
1147.976782
selenium_mcg_usda
115.13
sfa_10_0_decanoic_acid_g_usda
1.04
sfa_12_0_dodecanoic_acid_g_usda
1.23
sfa_14_0_tetradecanoic_acid_g_usda
4.86
sfa_16_0_hexadecanoic_acid_g_usda
20.12
sfa_18_0_octadecanoic_acid_g_usda
8.87
sfa_4_0_butanoic_acid_g_usda
1.34
sfa_6_0_hexanoic_acid_g_usda
0.72
sfa_8_0_octanoic_acid_g_usda
0.52
sodium_mg_usda
3728.38
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.22
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
823.0664401
tnf_beta_pg_ml
0.548265909
total_fat_g_usda
91.27
total_folate_mcg_usda
695.85
total_monounsaturated_fatty_acids_g_usda
33.02
total_polyunsaturated_fatty_acids_g_usda
11.54
total_saturated_fatty_acids_g_usda
40.43
total_sugars_g_usda
360.5
triglycerides
138
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
not collected
vcam_1_ng_ml
916.7409
vegf_pg_ml
25.09700836
viral load
19000
vitamin_a_rae_mcg_usda
1355.35
vitamin_b12_mcg_usda
13.49
vitamin_b6_mg_usda
3.38
vitamin_c_mg_usda
95.39
vitamin_e_as_alpha_tocopherol_mg_usda
6.57
vitamin_k_mcg_usda
56.54
watery_diarrhea_24hr_new
NO
zinc_mg_usda
19.34