13338.St.chronic.GLD092.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617040
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD092.U
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
No
acid_regurgitation_new
not collected
adiponectin
7.7
alcohol_g_usda
94.59
alpha_carotene_mcg_usda
868.38
beta_carotene_mcg_usda
9201.53
beta_cryptoxanthin_mcg_usda
153.99
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
424.24
calcium_mg_usda
1621.02
carbohydrate_g_usda
730.54
cd4_cd38_single_positive_cells
65
cd4_count
201
cd4_hladr_cd38_percent
14
cd4_hladr_single_positive_cells
5
cd4_nadir
201
cd4_percent
13
cd8_cd38_single_positive_cells
53
cd8_count
880
cd8_hladr_cd38_percent
35
cd8_hladr_single_positive_cells
2
cd8_percent
57
cholesterol_drugs_1mo
No
cholesterol_mg_usda
307.21
cohort
HIV untreated
collection_timestamp
4/28/16
constipation_24hr_new
NO
copper_mg_usda
2.31
crp_ng_ml
11675.45331
decreased_stools_new
not collected
dietary_fiber_g_usda
29.35
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
5167.43
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
679.62
folic_acid_mcg_usda
153.38
food_folate_mcg_usda
418.78
gender
male
gi_summary_score
not collected
glucose
90
gm_csf_pg_ml
0.657128399
gramwt_g_usda
7519.2
hard_stools_new
not collected
hdl
33
heartburn_new
not collected
hispanic
No
host age
28
host body habitat
colon
host body mass index
26.8
host body product
feces
host common name
human
host height
167
host scientific name
Homo sapiens
host subject id
HIV134
host taxid
9606
host weight
75.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
818.4029642
ifabp_pg_ml
1487.542
il_10_pg_ml
494.1004616
il_12_23p40_pg_ml
1109.887931
il_15_pg_ml
4.636348886
il_16_pg_ml
788.5667709
il_17a_pg_ml
7.831355236
il_22_pg_ml
697.2889044
il_6_pg_ml
455.5730947
il_7_pg_ml
14.50747328
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
insulin
4
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
22.39
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11092.10526
ldl
107
leptin
5.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
12187.67
lycopene_mcg_usda
10150.53
lymphocyte_count
1544.4
lymphocyte_percent
29.7
magnesium_mg_usda
485.42
mcp_1_pg_ml
9435.138351
metab_disease_score_binary
LOW
metabolic_disease_score
1.301065204
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.09
mfa_18_1_octadecenoic_acid_g_usda
51.02
mfa_20_1_eicosenoic_acid_g_usda
0.35
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
6.68
mped_add_sug_usda
113.59
mped_dairy_cheese_usda
1.15
mped_dairy_milk_usda
1.66
mped_dairy_total_usda
2.82
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
35.91
mped_discfat_sol_usda
85.1
mped_fruit_citmlb_usda
0.33
mped_fruit_other_usda
0.44
mped_fruit_total_usda
0.77
mped_grain_nwhl_usda
6.56
mped_grain_total_usda
6.79
mped_grain_whl_usda
0.23
mped_legumes_usda
0.17
mped_m_egg_usda
0.26
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.03
mped_m_frank_usda
0.34
mped_m_meat_usda
3.74
mped_m_mpf_usda
4.88
mped_m_nutsd_usda
0.31
mped_m_organ_usda
0.01
mped_m_poult_usda
0.77
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.16
mped_vegetable_drkgr_usda
0.92
mped_vegetable_other_usda
1.24
mped_vegetable_potato_usda
1.64
mped_vegetable_starcy_usda
0.28
mped_vegetable_tomato_usda
0.88
mped_vegetable_total_usda
5.12
nadir_date
4/28/16
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
No
niacin_mg_usda
35.11
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
23.28
pfa_18_3_octadecatrienoic_acig_g_usda
2.83
pfa_18_4_octadecatetraenoic_acid_g_usda
0.04
pfa_20_4_eicosatetraenoic_acid_g_usda
0.11
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
2167.4
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4912.81
probiotics_1wk
not collected
protein_g_usda
109.12
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
467.9
riboflavin_vitamin_b2_mg_usda
3.2
saa_ng_ml
2109.812941
sample name
qiita_sid_13338:13338.St.chronic.GLD092.U
sample type
stool
scd14_pg_ml
1945851.937
scd163_ng_ml
1459.760155
selenium_mcg_usda
118.99
sfa_10_0_decanoic_acid_g_usda
0.79
sfa_12_0_dodecanoic_acid_g_usda
1.1
sfa_14_0_tetradecanoic_acid_g_usda
4.12
sfa_16_0_hexadecanoic_acid_g_usda
24.9
sfa_18_0_octadecanoic_acid_g_usda
12.67
sfa_4_0_butanoic_acid_g_usda
1.1
sfa_6_0_hexanoic_acid_g_usda
0.6
sfa_8_0_octanoic_acid_g_usda
0.42
sodium_mg_usda
5043.43
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
1326.879903
tnf_beta_pg_ml
1.624683469
total_fat_g_usda
139.34
total_folate_mcg_usda
572.08
total_monounsaturated_fatty_acids_g_usda
54.53
total_polyunsaturated_fatty_acids_g_usda
26.79
total_saturated_fatty_acids_g_usda
47.2
total_sugars_g_usda
498.25
triglycerides
90
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
not collected
vcam_1_ng_ml
1589.880748
vegf_pg_ml
90.97670022
viral load
140000
vitamin_a_rae_mcg_usda
1277.15
vitamin_b12_mcg_usda
8.11
vitamin_b6_mg_usda
3.62
vitamin_c_mg_usda
151.9
vitamin_e_as_alpha_tocopherol_mg_usda
11.89
vitamin_k_mcg_usda
598.53
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.56