13338.St.chronic.GLD036.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617027
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD036.T
abdominal_distension_new
2
abdominal_pain_24hr_new
YES
abdominal_pains_new
2
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
1
adiponectin
8.8
alcohol_g_usda
0.02
alpha_carotene_mcg_usda
1424.2
art_years
7
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
30790.78
beta_cryptoxanthin_mcg_usda
983.51
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
337.07
calcium_mg_usda
3591.73
carbohydrate_g_usda
856.51
cd4_cd38_single_positive_cells
81
cd4_count
334
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
2
cd4_nadir
110
cd4_percent
22
cd8_cd38_single_positive_cells
52
cd8_count
713
cd8_hladr_cd38_percent
9
cd8_hladr_single_positive_cells
6
cd8_percent
47
cholesterol_drugs_1mo
No
cholesterol_mg_usda
645.61
cohort
HIV treated
collection_timestamp
7/8/15
constipation_24hr_new
YES
copper_mg_usda
4.82
crp_ng_ml
not collected
current_art
Atripla
current_art_start_date
4/1/08
decreased_stools_new
3
dietary_fiber_g_usda
73.52
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
5981.23
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1765.52
folic_acid_mcg_usda
220.79
food_folate_mcg_usda
1390.45
gender
male
gi_summary_score
1.785714286
glucose
87
gm_csf_pg_ml
not collected
gramwt_g_usda
18256.42
hard_stools_new
2
hdl
54
heartburn_new
2
hispanic
No
host age
46
host body habitat
colon
host body mass index
20.1
host body product
feces
host common name
human
host height
182
host scientific name
Homo sapiens
host subject id
HIV062
host taxid
9606
host weight
66.7
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
2008
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
43.31
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
79
leptin
0.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
47176.74
lycopene_mcg_usda
20906.94
lymphocyte_count
1516.2
lymphocyte_percent
39.9
magnesium_mg_usda
1142.88
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
0.927565492
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
3.28
mfa_18_1_octadecenoic_acid_g_usda
75.14
mfa_20_1_eicosenoic_acid_g_usda
0.53
mfa_22_1_docosenoic_acid_g_usda
0.07
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
62.53
mped_dairy_cheese_usda
1.14
mped_dairy_milk_usda
1.83
mped_dairy_total_usda
3.19
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
68.04
mped_discfat_sol_usda
116.26
mped_fruit_citmlb_usda
4.32
mped_fruit_other_usda
5.95
mped_fruit_total_usda
10.27
mped_grain_nwhl_usda
9.6
mped_grain_total_usda
10.82
mped_grain_whl_usda
1.22
mped_legumes_usda
0.23
mped_m_egg_usda
1.16
mped_m_fish_hi_usda
0.33
mped_m_fish_lo_usda
0.43
mped_m_frank_usda
1.36
mped_m_meat_usda
3.98
mped_m_mpf_usda
7.86
mped_m_nutsd_usda
0.88
mped_m_organ_usda
0
mped_m_poult_usda
1.75
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.22
mped_vegetable_drkgr_usda
4.43
mped_vegetable_other_usda
3.73
mped_vegetable_potato_usda
1.33
mped_vegetable_starcy_usda
0.86
mped_vegetable_tomato_usda
1.22
mped_vegetable_total_usda
11.79
nadir_date
1/15/08
nadir_report
Patient report
nadir_years
7.48
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
50.34
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
41.35
pfa_18_3_octadecatrienoic_acig_g_usda
6.42
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.26
pfa_20_5_eicosapentaenoic_acid_g_usda
0.06
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.13
phosphorus_mg_usda
3204.29
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
11465.56
probiotics_1wk
No
protein_g_usda
189.88
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
In a relationship but not living together
retinol_mcg_usda
993.12
riboflavin_vitamin_b2_mg_usda
5.82
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.chronic.GLD036.T
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
216.74
sfa_10_0_decanoic_acid_g_usda
1.43
sfa_12_0_dodecanoic_acid_g_usda
1.86
sfa_14_0_tetradecanoic_acid_g_usda
6.74
sfa_16_0_hexadecanoic_acid_g_usda
38.74
sfa_18_0_octadecanoic_acid_g_usda
17.57
sfa_4_0_butanoic_acid_g_usda
1.99
sfa_6_0_hexanoic_acid_g_usda
1.02
sfa_8_0_octanoic_acid_g_usda
0.69
sodium_mg_usda
9010.17
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.87
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
221.73
total_folate_mcg_usda
1610.87
total_monounsaturated_fatty_acids_g_usda
80.53
total_polyunsaturated_fatty_acids_g_usda
48.72
total_saturated_fatty_acids_g_usda
72.62
total_sugars_g_usda
462.78
triglycerides
61
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
viral load
20
vitamin_a_rae_mcg_usda
3658.98
vitamin_b12_mcg_usda
9.88
vitamin_b6_mg_usda
5.69
vitamin_c_mg_usda
825.81
vitamin_e_as_alpha_tocopherol_mg_usda
30.83
vitamin_k_mcg_usda
2259.55
watery_diarrhea_24hr_new
NO
zinc_mg_usda
29.95