13338.St.chronic.GLD009.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617014
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD009.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3.8
alcohol_g_usda
0.71
alpha_carotene_mcg_usda
362.3
art_years
12
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
3899.72
beta_cryptoxanthin_mcg_usda
370.59
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
519.89
calcium_mg_usda
994.1
carbohydrate_g_usda
218.77
cd4_cd38_single_positive_cells
66
cd4_count
819
cd4_hladr_cd38_percent
6
cd4_hladr_single_positive_cells
2
cd4_nadir
300
cd4_percent
27
cd8_cd38_single_positive_cells
13
cd8_count
1335
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
20
cd8_percent
44
cholesterol_drugs_1mo
not collected
cholesterol_mg_usda
147.66
cohort
HIV treated
collection_timestamp
12/18/14
constipation_24hr_new
NO
copper_mg_usda
1.43
crp_ng_ml
7349.777317
current_art
viramune, reyataz, truvada
current_art_start_date
1/1/09
decreased_stools_new
1
dietary_fiber_g_usda
19.83
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1560.42
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
429.21
folic_acid_mcg_usda
72.7
food_folate_mcg_usda
305.39
gender
male
gi_summary_score
1.142857143
glucose
71
gm_csf_pg_ml
0.200881353
gramwt_g_usda
4552.18
hard_stools_new
1
hdl
29
heartburn_new
1
hispanic
No
host age
46
host body habitat
colon
host body mass index
26.5
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV056
host taxid
9606
host weight
82.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
503.0821876
ifabp_pg_ml
10442.719
il_10_pg_ml
299.4884964
il_12_23p40_pg_ml
88.72511964
il_15_pg_ml
4.902639603
il_16_pg_ml
333.4316949
il_17a_pg_ml
1.581183314
il_22_pg_ml
366.0170811
il_6_pg_ml
420.7895688
il_7_pg_ml
15.76558217
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
2002
insulin
9
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
11.13
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
12342.90541
ldl
83
leptin
9.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
3504.44
lycopene_mcg_usda
4075.81
lymphocyte_count
3034
lymphocyte_percent
39.4
magnesium_mg_usda
324.36
mcp_1_pg_ml
7691.240319
metab_disease_score_binary
LOW
metabolic_disease_score
1.299877144
metabolome_data
Yes
metformin_1mo
not collected
mfa_16_1_hexadecenoic_acid_g_usda
0.74
mfa_18_1_octadecenoic_acid_g_usda
20.19
mfa_20_1_eicosenoic_acid_g_usda
0.19
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.06
mped_add_sug_usda
7.02
mped_dairy_cheese_usda
0.13
mped_dairy_milk_usda
0.26
mped_dairy_total_usda
0.74
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
14.66
mped_discfat_sol_usda
22.53
mped_fruit_citmlb_usda
0.96
mped_fruit_other_usda
2.8
mped_fruit_total_usda
3.76
mped_grain_nwhl_usda
2.78
mped_grain_total_usda
3.17
mped_grain_whl_usda
0.39
mped_legumes_usda
0.1
mped_m_egg_usda
0.1
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.5
mped_m_frank_usda
0.03
mped_m_meat_usda
2.35
mped_m_mpf_usda
3.24
mped_m_nutsd_usda
2.03
mped_m_organ_usda
0
mped_m_poult_usda
0.08
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.08
mped_vegetable_drkgr_usda
0.56
mped_vegetable_other_usda
0.73
mped_vegetable_potato_usda
0.05
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.25
mped_vegetable_total_usda
1.74
nadir_date
not collected
nadir_report
Patient report
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
16.73
no_symptoms_24hr_new
YES
orientation_new
Bisexual
pfa_18_2_octadecadienoic_acid_g_usda
10.19
pfa_18_3_octadecatrienoic_acig_g_usda
0.99
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
1148.37
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3821.52
probiotics_1wk
No
protein_g_usda
62.23
race
Black/African American
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
221.38
riboflavin_vitamin_b2_mg_usda
2.26
saa_ng_ml
17230.93265
sample name
qiita_sid_13338:13338.St.chronic.GLD009.T
sample type
stool
scd14_pg_ml
2496296.838
scd163_ng_ml
588.6818184
selenium_mcg_usda
76.72
sfa_10_0_decanoic_acid_g_usda
0.29
sfa_12_0_dodecanoic_acid_g_usda
0.44
sfa_14_0_tetradecanoic_acid_g_usda
1.43
sfa_16_0_hexadecanoic_acid_g_usda
8.47
sfa_18_0_octadecanoic_acid_g_usda
3.85
sfa_4_0_butanoic_acid_g_usda
0.37
sfa_6_0_hexanoic_acid_g_usda
0.19
sfa_8_0_octanoic_acid_g_usda
0.14
sodium_mg_usda
2172.8
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
1.22
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
914.6542475
tnf_beta_pg_ml
0.075280854
total_fat_g_usda
56.37
total_folate_mcg_usda
378.18
total_monounsaturated_fatty_acids_g_usda
21.6
total_polyunsaturated_fatty_acids_g_usda
11.54
total_saturated_fatty_acids_g_usda
15.82
total_sugars_g_usda
121.52
triglycerides
82
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
479.5531066
vegf_pg_ml
226.6687162
viral load
28
vitamin_a_rae_mcg_usda
577.04
vitamin_b12_mcg_usda
3.85
vitamin_b6_mg_usda
1.69
vitamin_c_mg_usda
241.56
vitamin_e_as_alpha_tocopherol_mg_usda
7.78
vitamin_k_mcg_usda
195.8
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.24