13338.St.chronic.GLD131.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617049
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD131.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
clindamycin; minocycline
acid_regurgitation_new
2
adiponectin
3.5
alcohol_g_usda
6.13
alpha_carotene_mcg_usda
311.12
art_years
23
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
1670.53
beta_cryptoxanthin_mcg_usda
198.38
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
748.16
calcium_mg_usda
1737.63
carbohydrate_g_usda
196.25
cd4_cd38_single_positive_cells
56
cd4_count
692
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
1
cd4_nadir
350
cd4_percent
48
cd8_cd38_single_positive_cells
20
cd8_count
274
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
6
cd8_percent
19
cholesterol_drugs_1mo
No
cholesterol_mg_usda
200.91
cohort
HIV treated LD
collection_timestamp
7/21/16
constipation_24hr_new
NO
copper_mg_usda
1.48
crp_ng_ml
7974.070246
current_art
atripla
current_art_start_date
11/1/06
decreased_stools_new
2
dietary_fiber_g_usda
10.44
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1513.43
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
428.72
folic_acid_mcg_usda
94.17
food_folate_mcg_usda
268.5
gender
male
gi_summary_score
1.571428571
glucose
105
gm_csf_pg_ml
0.18493704
gramwt_g_usda
10763.63
hard_stools_new
2
hdl
36
heartburn_new
1
hispanic
No
host age
54
host body habitat
colon
host body mass index
29.4
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV229
host taxid
9606
host weight
87
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
403.8836889
ifabp_pg_ml
2066.654
il_10_pg_ml
367.4363796
il_12_23p40_pg_ml
198.4311354
il_15_pg_ml
3.104230861
il_16_pg_ml
365.0035589
il_17a_pg_ml
9.8113514
il_22_pg_ml
364.2367492
il_6_pg_ml
494.937543
il_7_pg_ml
9.625414447
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1993
insulin
16
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
8.7
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11405.40541
ldl
105
leptin
23.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1123.83
lycopene_mcg_usda
2866.66
lymphocyte_count
1441.6
lymphocyte_percent
27.2
magnesium_mg_usda
433.34
mcp_1_pg_ml
9788.223363
metab_disease_score_binary
HIGH
metabolic_disease_score
1.630508344
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.76
mfa_18_1_octadecenoic_acid_g_usda
20.04
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.47
mped_add_sug_usda
11.63
mped_dairy_cheese_usda
0.4
mped_dairy_milk_usda
2.42
mped_dairy_total_usda
2.88
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
16.36
mped_discfat_sol_usda
22.16
mped_fruit_citmlb_usda
0.68
mped_fruit_other_usda
0.37
mped_fruit_total_usda
1.05
mped_grain_nwhl_usda
3.24
mped_grain_total_usda
3.52
mped_grain_whl_usda
0.29
mped_legumes_usda
0.07
mped_m_egg_usda
0.82
mped_m_fish_hi_usda
0.03
mped_m_fish_lo_usda
0.1
mped_m_frank_usda
0.2
mped_m_meat_usda
0.51
mped_m_mpf_usda
1.6
mped_m_nutsd_usda
1.3
mped_m_organ_usda
0
mped_m_poult_usda
0.77
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.08
mped_vegetable_drkgr_usda
0.09
mped_vegetable_other_usda
0.29
mped_vegetable_potato_usda
0.15
mped_vegetable_starcy_usda
0.07
mped_vegetable_tomato_usda
0.23
mped_vegetable_total_usda
0.91
nadir_date
not collected
nadir_report
Patient report
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
16.44
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.59
pfa_18_3_octadecatrienoic_acig_g_usda
0.68
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1350.82
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3541.72
probiotics_1wk
Daily
protein_g_usda
61.67
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
523.62
riboflavin_vitamin_b2_mg_usda
3.07
saa_ng_ml
3220.781049
sample name
qiita_sid_13338:13338.St.chronic.GLD131.T
sample type
stool
scd14_pg_ml
2042830.835
scd163_ng_ml
758.3859432
selenium_mcg_usda
79.95
sfa_10_0_decanoic_acid_g_usda
0.33
sfa_12_0_dodecanoic_acid_g_usda
0.39
sfa_14_0_tetradecanoic_acid_g_usda
1.37
sfa_16_0_hexadecanoic_acid_g_usda
8.61
sfa_18_0_octadecanoic_acid_g_usda
3.7
sfa_4_0_butanoic_acid_g_usda
0.36
sfa_6_0_hexanoic_acid_g_usda
0.22
sfa_8_0_octanoic_acid_g_usda
0.15
sodium_mg_usda
2241.84
statin_type
atorvastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.1
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
942.5877563
tnf_beta_pg_ml
0.220099097
total_fat_g_usda
52.92
total_folate_mcg_usda
362.7
total_monounsaturated_fatty_acids_g_usda
21.28
total_polyunsaturated_fatty_acids_g_usda
9.57
total_saturated_fatty_acids_g_usda
15.69
total_sugars_g_usda
107.24
triglycerides
199
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
632.2516261
vegf_pg_ml
71.21763033
viral load
0
vitamin_a_rae_mcg_usda
683.62
vitamin_b12_mcg_usda
4.61
vitamin_b6_mg_usda
1.55
vitamin_c_mg_usda
106.88
vitamin_e_as_alpha_tocopherol_mg_usda
5.76
vitamin_k_mcg_usda
61.08
watery_diarrhea_24hr_new
NO
zinc_mg_usda
8.38