13338.St.neg.GLD129
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617108
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD129
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.5
alcohol_g_usda
7.87
alpha_carotene_mcg_usda
176.09
beta_carotene_mcg_usda
1225.8
beta_cryptoxanthin_mcg_usda
6.01
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
549.95
calcium_mg_usda
2322.11
carbohydrate_g_usda
238.21
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
170.68
cohort
HIV negative MSW
collection_timestamp
7/14/16
constipation_24hr_new
NO
copper_mg_usda
1.64
crp_ng_ml
844.0675873
decreased_stools_new
2
dietary_fiber_g_usda
9.59
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1918
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
515.49
folic_acid_mcg_usda
180.27
food_folate_mcg_usda
208.86
gender
male
gi_summary_score
1.214285714
glucose
84
gm_csf_pg_ml
0.295315985
gramwt_g_usda
7195.7
hard_stools_new
1
hdl
43
heartburn_new
1
hispanic
No
host age
32
host body habitat
colon
host body mass index
28.6
host body product
feces
host common name
human
host height
181
host scientific name
Homo sapiens
host subject id
HIV221
host taxid
9606
host weight
93.8
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
417.4074831
ifabp_pg_ml
1758.148
il_10_pg_ml
237.1931668
il_12_23p40_pg_ml
149.5433614
il_15_pg_ml
3.899891569
il_16_pg_ml
483.348349
il_17a_pg_ml
2.313882565
il_22_pg_ml
329.6612203
il_6_pg_ml
224.9566853
il_7_pg_ml
9.225550506
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
8
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
18.8
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8921.985816
ldl
139
leptin
13
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
379.46
lycopene_mcg_usda
11999.39
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
446.06
mcp_1_pg_ml
8643.029573
metab_disease_score_binary
HIGH
metabolic_disease_score
1.390963693
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.02
mfa_18_1_octadecenoic_acid_g_usda
18.55
mfa_20_1_eicosenoic_acid_g_usda
0.09
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.56
mped_add_sug_usda
20.25
mped_dairy_cheese_usda
1.61
mped_dairy_milk_usda
3.65
mped_dairy_total_usda
5.35
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
8.93
mped_discfat_sol_usda
37.63
mped_fruit_citmlb_usda
0.41
mped_fruit_other_usda
0.12
mped_fruit_total_usda
0.52
mped_grain_nwhl_usda
3.03
mped_grain_total_usda
4.51
mped_grain_whl_usda
1.48
mped_legumes_usda
0.01
mped_m_egg_usda
0.1
mped_m_fish_hi_usda
0.09
mped_m_fish_lo_usda
0.38
mped_m_frank_usda
1.17
mped_m_meat_usda
0.98
mped_m_mpf_usda
3.02
mped_m_nutsd_usda
0.16
mped_m_organ_usda
0
mped_m_poult_usda
0.4
mped_m_soy_usda
0.15
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.02
mped_vegetable_other_usda
0.14
mped_vegetable_potato_usda
0.1
mped_vegetable_starcy_usda
0
mped_vegetable_tomato_usda
0.54
mped_vegetable_total_usda
0.83
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
28.82
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
6.8
pfa_18_3_octadecatrienoic_acig_g_usda
0.75
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
2263.28
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3987.34
probiotics_1wk
No
protein_g_usda
102.06
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1541.59
riboflavin_vitamin_b2_mg_usda
4.67
saa_ng_ml
2670.477853
sample name
qiita_sid_13338:13338.St.neg.GLD129
sample type
stool
scd14_pg_ml
1304828.339
scd163_ng_ml
557.7964331
selenium_mcg_usda
106.95
sfa_10_0_decanoic_acid_g_usda
0.56
sfa_12_0_dodecanoic_acid_g_usda
0.79
sfa_14_0_tetradecanoic_acid_g_usda
2.73
sfa_16_0_hexadecanoic_acid_g_usda
11.38
sfa_18_0_octadecanoic_acid_g_usda
5.13
sfa_4_0_butanoic_acid_g_usda
0.78
sfa_6_0_hexanoic_acid_g_usda
0.35
sfa_8_0_octanoic_acid_g_usda
0.36
sodium_mg_usda
3371.41
statin_type
lipitor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
2.2
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
585.1244603
tnf_beta_pg_ml
0.274595626
total_fat_g_usda
58.51
total_folate_mcg_usda
391.09
total_monounsaturated_fatty_acids_g_usda
20.3
total_polyunsaturated_fatty_acids_g_usda
7.83
total_saturated_fatty_acids_g_usda
23.14
total_sugars_g_usda
145.34
triglycerides
159
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
531.7360516
vegf_pg_ml
48.23538602
vitamin_a_rae_mcg_usda
1651.76
vitamin_b12_mcg_usda
9.37
vitamin_b6_mg_usda
2.8
vitamin_c_mg_usda
104.79
vitamin_e_as_alpha_tocopherol_mg_usda
6.59
vitamin_k_mcg_usda
64.2
watery_diarrhea_24hr_new
NO
zinc_mg_usda
15.52