13338.St.chronic.DM034.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617007
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM034.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
11.4
alcohol_g_usda
1.38
alpha_carotene_mcg_usda
697.22
art_years
10
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2542.32
beta_cryptoxanthin_mcg_usda
51.99
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
512.96
calcium_mg_usda
690.35
carbohydrate_g_usda
213.9
cd4_cd38_single_positive_cells
79
cd4_count
753
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_nadir
211
cd4_percent
47
cd8_cd38_single_positive_cells
42
cd8_count
753
cd8_hladr_cd38_percent
7
cd8_hladr_single_positive_cells
3
cd8_percent
47
cholesterol_drugs_1mo
No
cholesterol_mg_usda
320.03
cohort
HIV treated
collection_timestamp
1/11/17
constipation_24hr_new
NO
copper_mg_usda
1.16
crp_ng_ml
11351.22218
current_art
triumeq
current_art_start_date
1/1/15
decreased_stools_new
2
dietary_fiber_g_usda
15.81
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1748.84
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
559.43
folic_acid_mcg_usda
209.56
food_folate_mcg_usda
203.02
gender
male
gi_summary_score
1.357142857
glucose
92
gm_csf_pg_ml
0.199167655
gramwt_g_usda
3537.59
hard_stools_new
1
hdl
55
heartburn_new
1
hispanic
No
host age
52
host body habitat
colon
host body mass index
22.5
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV261
host taxid
9606
host weight
70.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
360.6221926
ifabp_pg_ml
982.776
il_10_pg_ml
364.0186936
il_12_23p40_pg_ml
160.8277874
il_15_pg_ml
3.955770461
il_16_pg_ml
491.2641112
il_17a_pg_ml
1.123651311
il_22_pg_ml
964.5800296
il_6_pg_ml
408.7462681
il_7_pg_ml
5.471013171
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
2007
insulin
4
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
15.05
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
18676.69173
ldl
94
leptin
5.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1415.35
lycopene_mcg_usda
4280.05
lymphocyte_count
1601.6
lymphocyte_percent
36.4
magnesium_mg_usda
290.35
mcp_1_pg_ml
11704.96788
metab_disease_score_binary
LOW
metabolic_disease_score
1.026323886
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.12
mfa_18_1_octadecenoic_acid_g_usda
23.41
mfa_20_1_eicosenoic_acid_g_usda
0.2
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.1
mped_add_sug_usda
10.98
mped_dairy_cheese_usda
0.21
mped_dairy_milk_usda
1.05
mped_dairy_total_usda
1.26
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
23.41
mped_discfat_sol_usda
30.57
mped_fruit_citmlb_usda
0.13
mped_fruit_other_usda
0.98
mped_fruit_total_usda
1.11
mped_grain_nwhl_usda
3.97
mped_grain_total_usda
4.69
mped_grain_whl_usda
0.72
mped_legumes_usda
0.13
mped_m_egg_usda
0.63
mped_m_fish_hi_usda
0.29
mped_m_fish_lo_usda
0.46
mped_m_frank_usda
0.27
mped_m_meat_usda
1.46
mped_m_mpf_usda
4.6
mped_m_nutsd_usda
0.47
mped_m_organ_usda
0
mped_m_poult_usda
2.11
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.11
mped_vegetable_other_usda
0.44
mped_vegetable_potato_usda
0.25
mped_vegetable_starcy_usda
0.18
mped_vegetable_tomato_usda
0.26
mped_vegetable_total_usda
1.38
nadir_date
1/1/07
nadir_report
not collected
nadir_years
10.03
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
24.55
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
11.56
pfa_18_3_octadecatrienoic_acig_g_usda
1.12
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.15
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.11
phosphorus_mg_usda
1218.94
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3077.64
probiotics_1wk
not collected
protein_g_usda
72.28
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
515.92
riboflavin_vitamin_b2_mg_usda
2.82
saa_ng_ml
16961.02944
sample name
qiita_sid_13338:13338.St.chronic.DM034.1.T
sample type
stool
scd14_pg_ml
1448827.176
scd163_ng_ml
464.3805122
selenium_mcg_usda
90.53
sfa_10_0_decanoic_acid_g_usda
0.49
sfa_12_0_dodecanoic_acid_g_usda
0.62
sfa_14_0_tetradecanoic_acid_g_usda
2.04
sfa_16_0_hexadecanoic_acid_g_usda
12.13
sfa_18_0_octadecanoic_acid_g_usda
5.57
sfa_4_0_butanoic_acid_g_usda
0.65
sfa_6_0_hexanoic_acid_g_usda
0.37
sfa_8_0_octanoic_acid_g_usda
0.24
sodium_mg_usda
2778.2
statin_type
pravastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.49
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
902.2547389
tnf_beta_pg_ml
0.188330844
total_fat_g_usda
70.41
total_folate_mcg_usda
412.41
total_monounsaturated_fatty_acids_g_usda
25.18
total_polyunsaturated_fatty_acids_g_usda
13.61
total_saturated_fatty_acids_g_usda
23.02
total_sugars_g_usda
90.78
triglycerides
93
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
586.0191279
vegf_pg_ml
25.18449569
viral load
35
vitamin_a_rae_mcg_usda
759.84
vitamin_b12_mcg_usda
5.48
vitamin_b6_mg_usda
2.19
vitamin_c_mg_usda
62.49
vitamin_e_as_alpha_tocopherol_mg_usda
6.31
vitamin_k_mcg_usda
76.79
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.46