13338.St.chronic.DM003.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617004
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM003.1.T
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
No
acid_regurgitation_new
not collected
adiponectin
3.4
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
55.81
art_years
4
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
4547.37
beta_cryptoxanthin_mcg_usda
63.15
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
317.07
calcium_mg_usda
1076.1
carbohydrate_g_usda
253.27
cd4_cd38_single_positive_cells
64
cd4_count
486
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
0
cd4_nadir
not collected
cd4_percent
28
cd8_cd38_single_positive_cells
27
cd8_count
746
cd8_hladr_cd38_percent
2
cd8_hladr_single_positive_cells
0
cd8_percent
43
cholesterol_drugs_1mo
not collected
cholesterol_mg_usda
653.91
cohort
HIV treated
collection_timestamp
2/10/16
constipation_24hr_new
NO
copper_mg_usda
1.68
crp_ng_ml
433.3332205
current_art
Stribild
current_art_start_date
4/15/15
decreased_stools_new
not collected
dietary_fiber_g_usda
19.03
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2501.97
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
738.1
folic_acid_mcg_usda
198.43
food_folate_mcg_usda
400.76
gender
male
gi_summary_score
not collected
glucose
88
gm_csf_pg_ml
0.398459268
gramwt_g_usda
3968.42
hard_stools_new
not collected
hdl
34
heartburn_new
not collected
hispanic
No
host age
31
host body habitat
colon
host body mass index
not collected
host body product
feces
host common name
human
host height
not collected
host scientific name
Homo sapiens
host subject id
HIV059
host taxid
9606
host weight
not collected
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
422.9032398
ifabp_pg_ml
2565.613
il_10_pg_ml
232.3482002
il_12_23p40_pg_ml
230.7349741
il_15_pg_ml
4.315932334
il_16_pg_ml
4525.653977
il_17a_pg_ml
2.677419265
il_22_pg_ml
not collected
il_6_pg_ml
212.3972672
il_7_pg_ml
10.75424226
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
initial_art_start_date
2012
insulin
3
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
18.34
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
3507.518797
ldl
81
leptin
2.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
2869.1
lycopene_mcg_usda
1519.33
lymphocyte_count
1734.6
lymphocyte_percent
41.3
magnesium_mg_usda
397.01
mcp_1_pg_ml
8951.352059
metab_disease_score_binary
LOW
metabolic_disease_score
1.269929463
metabolome_data
Yes
metformin_1mo
not collected
mfa_16_1_hexadecenoic_acid_g_usda
1.94
mfa_18_1_octadecenoic_acid_g_usda
54.34
mfa_20_1_eicosenoic_acid_g_usda
0.52
mfa_22_1_docosenoic_acid_g_usda
0.15
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
13.45
mped_dairy_cheese_usda
0.37
mped_dairy_milk_usda
1.39
mped_dairy_total_usda
1.78
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
59.01
mped_discfat_sol_usda
40.36
mped_fruit_citmlb_usda
0.19
mped_fruit_other_usda
1.07
mped_fruit_total_usda
1.25
mped_grain_nwhl_usda
5.08
mped_grain_total_usda
6.13
mped_grain_whl_usda
1.05
mped_legumes_usda
0.01
mped_m_egg_usda
2.25
mped_m_fish_hi_usda
2.19
mped_m_fish_lo_usda
0.29
mped_m_frank_usda
0.13
mped_m_meat_usda
1.85
mped_m_mpf_usda
5.14
mped_m_nutsd_usda
2.13
mped_m_organ_usda
0.02
mped_m_poult_usda
0.65
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.13
mped_vegetable_drkgr_usda
0.67
mped_vegetable_other_usda
0.85
mped_vegetable_potato_usda
0.45
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.08
mped_vegetable_total_usda
2.21
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
Yes
niacin_mg_usda
36.57
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
21.19
pfa_18_3_octadecatrienoic_acig_g_usda
1.93
pfa_18_4_octadecatetraenoic_acid_g_usda
0.07
pfa_20_4_eicosatetraenoic_acid_g_usda
0.29
pfa_20_5_eicosapentaenoic_acid_g_usda
0.32
pfa_22_5_docosapentaenoic_acid_g_usda
0.08
pfa_22_6_docosahexaenoic_acid_g_usda
0.54
phosphorus_mg_usda
1716.95
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3554.97
probiotics_1wk
not collected
protein_g_usda
104.24
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
825.04
riboflavin_vitamin_b2_mg_usda
3.63
saa_ng_ml
783.3763669
sample name
qiita_sid_13338:13338.St.chronic.DM003.1.T
sample type
stool
scd14_pg_ml
1253744.958
scd163_ng_ml
583.9690556
selenium_mcg_usda
165.61
sfa_10_0_decanoic_acid_g_usda
0.46
sfa_12_0_dodecanoic_acid_g_usda
0.76
sfa_14_0_tetradecanoic_acid_g_usda
2.3
sfa_16_0_hexadecanoic_acid_g_usda
19.26
sfa_18_0_octadecanoic_acid_g_usda
7.21
sfa_4_0_butanoic_acid_g_usda
0.54
sfa_6_0_hexanoic_acid_g_usda
0.29
sfa_8_0_octanoic_acid_g_usda
0.25
sodium_mg_usda
3630.86
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
2.21
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
766.6915855
tnf_beta_pg_ml
0.37229712
total_fat_g_usda
124.41
total_folate_mcg_usda
601.01
total_monounsaturated_fatty_acids_g_usda
57.33
total_polyunsaturated_fatty_acids_g_usda
24.66
total_saturated_fatty_acids_g_usda
32.35
total_sugars_g_usda
108.15
triglycerides
81
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
not collected
vcam_1_ng_ml
764.6784435
vegf_pg_ml
164.1777826
viral load
0
vitamin_a_rae_mcg_usda
1208.95
vitamin_b12_mcg_usda
9.22
vitamin_b6_mg_usda
3.46
vitamin_c_mg_usda
120.83
vitamin_e_as_alpha_tocopherol_mg_usda
15.29
vitamin_k_mcg_usda
225.98
watery_diarrhea_24hr_new
NO
zinc_mg_usda
14.12