13338.St.chronic.GLD079.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617038
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD079.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
1.7
alcohol_g_usda
4.26
alpha_carotene_mcg_usda
119.31
art_years
23
arv_ccr5_antagonist
YES
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
1739.06
beta_cryptoxanthin_mcg_usda
20.58
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
948.65
calcium_mg_usda
802.42
carbohydrate_g_usda
184.81
cd4_cd38_single_positive_cells
32
cd4_count
190
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
2
cd4_nadir
13
cd4_percent
17
cd8_cd38_single_positive_cells
20
cd8_count
358
cd8_hladr_cd38_percent
16
cd8_hladr_single_positive_cells
3
cd8_percent
32
cholesterol_drugs_1mo
not collected
cholesterol_mg_usda
249.53
cohort
HIV treated LD
collection_timestamp
2/18/16
constipation_24hr_new
NO
copper_mg_usda
1.15
crp_ng_ml
2697.710228
current_art
maraviroc, isentress, rilpivirine, epivir
decreased_stools_new
1
dietary_fiber_g_usda
14.5
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1863.99
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
518.92
folic_acid_mcg_usda
149.64
food_folate_mcg_usda
264.86
gender
male
gi_summary_score
2
glucose
97
gm_csf_pg_ml
0.496617953
gramwt_g_usda
3962.6
hard_stools_new
1
hdl
26
heartburn_new
2
hispanic
No
host age
63
host body habitat
colon
host body mass index
23
host body product
feces
host common name
human
host height
177.8
host scientific name
Homo sapiens
host subject id
HIV181
host taxid
9606
host weight
72.8
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
541.067391
ifabp_pg_ml
3705.176
il_10_pg_ml
458.8476362
il_12_23p40_pg_ml
330.605603
il_15_pg_ml
6.976643597
il_16_pg_ml
1603.914533
il_17a_pg_ml
10.835239
il_22_pg_ml
348.5026538
il_6_pg_ml
753.3438879
il_7_pg_ml
24.03946161
incomplete_evacuation_new
3
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
1993
insulin
10
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
14.05
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
9737.588652
ldl
86
leptin
2.8
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2140.3
lycopene_mcg_usda
4956.65
lymphocyte_count
1120
lymphocyte_percent
16
magnesium_mg_usda
317.33
mcp_1_pg_ml
8194.817623
metab_disease_score_binary
HIGH
metabolic_disease_score
1.599718714
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.22
mfa_18_1_octadecenoic_acid_g_usda
28.65
mfa_20_1_eicosenoic_acid_g_usda
0.26
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.29
mped_add_sug_usda
7.55
mped_dairy_cheese_usda
0.32
mped_dairy_milk_usda
0.42
mped_dairy_total_usda
1.07
mped_dairy_yogurt_usda
0.32
mped_discfat_oil_usda
23.11
mped_discfat_sol_usda
44.68
mped_fruit_citmlb_usda
0.05
mped_fruit_other_usda
0.13
mped_fruit_total_usda
0.18
mped_grain_nwhl_usda
6.53
mped_grain_total_usda
7.31
mped_grain_whl_usda
0.77
mped_legumes_usda
0.05
mped_m_egg_usda
0.22
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.18
mped_m_frank_usda
0.07
mped_m_meat_usda
1.26
mped_m_mpf_usda
4.05
mped_m_nutsd_usda
1.7
mped_m_organ_usda
0.01
mped_m_poult_usda
2.53
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.42
mped_vegetable_other_usda
0.49
mped_vegetable_potato_usda
0.44
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.27
mped_vegetable_total_usda
1.72
nadir_date
not collected
nadir_report
Medical records report
nadir_years
not collected
nausea_vomiting_24hr_new
YES
nausea_vomiting_new
3
new_sti_12mo_new
not collected
niacin_mg_usda
25.54
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
14.22
pfa_18_3_octadecatrienoic_acig_g_usda
1.25
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
1198.74
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3327.42
probiotics_1wk
No
protein_g_usda
82.08
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
341.67
riboflavin_vitamin_b2_mg_usda
3.15
saa_ng_ml
9806.39808
sample name
qiita_sid_13338:13338.St.chronic.GLD079.T
sample type
stool
scd14_pg_ml
2521459.948
scd163_ng_ml
1015.467085
selenium_mcg_usda
109.5
sfa_10_0_decanoic_acid_g_usda
0.79
sfa_12_0_dodecanoic_acid_g_usda
0.97
sfa_14_0_tetradecanoic_acid_g_usda
3.26
sfa_16_0_hexadecanoic_acid_g_usda
16.09
sfa_18_0_octadecanoic_acid_g_usda
6.84
sfa_4_0_butanoic_acid_g_usda
1.02
sfa_6_0_hexanoic_acid_g_usda
0.6
sfa_8_0_octanoic_acid_g_usda
0.38
sodium_mg_usda
2913.8
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
1.59
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
834.3333179
tnf_beta_pg_ml
0.310733306
total_fat_g_usda
89.99
total_folate_mcg_usda
414.15
total_monounsaturated_fatty_acids_g_usda
30.77
total_polyunsaturated_fatty_acids_g_usda
15.76
total_saturated_fatty_acids_g_usda
31.29
total_sugars_g_usda
56.28
triglycerides
172
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
1477.218347
vegf_pg_ml
53.89585241
viral load
0
vitamin_a_rae_mcg_usda
494.68
vitamin_b12_mcg_usda
3.63
vitamin_b6_mg_usda
1.37
vitamin_c_mg_usda
47.59
vitamin_e_as_alpha_tocopherol_mg_usda
8.42
vitamin_k_mcg_usda
142.03
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.8