13338.St.neg.GLD113
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617101
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD113
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.8
alcohol_g_usda
10.14
alpha_carotene_mcg_usda
199.56
beta_carotene_mcg_usda
1507.83
beta_cryptoxanthin_mcg_usda
35.14
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
516.13
calcium_mg_usda
837.35
carbohydrate_g_usda
229.22
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
439.81
cohort
HIV negative MSW
collection_timestamp
8/19/16
constipation_24hr_new
NO
copper_mg_usda
1.32
crp_ng_ml
964.4908923
decreased_stools_new
1
dietary_fiber_g_usda
13.06
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2217.03
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
449.23
folic_acid_mcg_usda
146.77
food_folate_mcg_usda
199.7
gender
male
gi_summary_score
1.071428571
glucose
106
gm_csf_pg_ml
0.263118055
gramwt_g_usda
5098.32
hard_stools_new
1
hdl
42
heartburn_new
2
hispanic
No
host age
39
host body habitat
colon
host body mass index
24.6
host body product
feces
host common name
human
host height
185
host scientific name
Homo sapiens
host subject id
HIV208
host taxid
9606
host weight
84.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
428.5459801
ifabp_pg_ml
2311.379
il_10_pg_ml
303.1549429
il_12_23p40_pg_ml
195.9767651
il_15_pg_ml
3.582426277
il_16_pg_ml
336.296416
il_17a_pg_ml
2.721204358
il_22_pg_ml
188.2856939
il_6_pg_ml
336.6379314
il_7_pg_ml
14.96418743
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
17
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
13.4
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10857.14286
ldl
211
leptin
15.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1407.66
lycopene_mcg_usda
6508.16
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
264.87
mcp_1_pg_ml
10442.84695
metab_disease_score_binary
HIGH
metabolic_disease_score
1.546362342
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.85
mfa_18_1_octadecenoic_acid_g_usda
38.34
mfa_20_1_eicosenoic_acid_g_usda
0.28
mfa_22_1_docosenoic_acid_g_usda
0.06
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.7
mped_add_sug_usda
23.16
mped_dairy_cheese_usda
1.05
mped_dairy_milk_usda
0.2
mped_dairy_total_usda
1.3
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
18.55
mped_discfat_sol_usda
68.03
mped_fruit_citmlb_usda
0.1
mped_fruit_other_usda
0.27
mped_fruit_total_usda
0.36
mped_grain_nwhl_usda
5.96
mped_grain_total_usda
6.2
mped_grain_whl_usda
0.24
mped_legumes_usda
0.24
mped_m_egg_usda
1.04
mped_m_fish_hi_usda
0.33
mped_m_fish_lo_usda
0.44
mped_m_frank_usda
1.6
mped_m_meat_usda
1.69
mped_m_mpf_usda
4.56
mped_m_nutsd_usda
0.31
mped_m_organ_usda
0
mped_m_poult_usda
0.49
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.04
mped_vegetable_drkgr_usda
0.19
mped_vegetable_other_usda
0.3
mped_vegetable_potato_usda
0.15
mped_vegetable_starcy_usda
0.03
mped_vegetable_tomato_usda
0.41
mped_vegetable_total_usda
1.12
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
19.8
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
16.34
pfa_18_3_octadecatrienoic_acig_g_usda
1.73
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.06
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.12
phosphorus_mg_usda
1205.8
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2523.68
probiotics_1wk
No
protein_g_usda
77.74
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
376.54
riboflavin_vitamin_b2_mg_usda
2.48
saa_ng_ml
1255.711915
sample name
qiita_sid_13338:13338.St.neg.GLD113
sample type
stool
scd14_pg_ml
1407822.633
scd163_ng_ml
678.5349962
selenium_mcg_usda
107.98
sfa_10_0_decanoic_acid_g_usda
0.57
sfa_12_0_dodecanoic_acid_g_usda
0.72
sfa_14_0_tetradecanoic_acid_g_usda
3
sfa_16_0_hexadecanoic_acid_g_usda
19.08
sfa_18_0_octadecanoic_acid_g_usda
9.08
sfa_4_0_butanoic_acid_g_usda
0.79
sfa_6_0_hexanoic_acid_g_usda
0.41
sfa_8_0_octanoic_acid_g_usda
0.29
sodium_mg_usda
3656.43
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.44
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
704.8960786
tnf_beta_pg_ml
0.212441065
total_fat_g_usda
106.24
total_folate_mcg_usda
346.35
total_monounsaturated_fatty_acids_g_usda
41.14
total_polyunsaturated_fatty_acids_g_usda
18.77
total_saturated_fatty_acids_g_usda
34.95
total_sugars_g_usda
116.74
triglycerides
120
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
460.1167475
vegf_pg_ml
153.4063871
vitamin_a_rae_mcg_usda
512.4
vitamin_b12_mcg_usda
4.82
vitamin_b6_mg_usda
1.29
vitamin_c_mg_usda
36.2
vitamin_e_as_alpha_tocopherol_mg_usda
7.31
vitamin_k_mcg_usda
98.5
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.56