13338.St.neg.GLD082
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617093
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:20Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD082
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.3
alcohol_g_usda
17.48
alpha_carotene_mcg_usda
1625.68
beta_carotene_mcg_usda
11073.16
beta_cryptoxanthin_mcg_usda
242.05
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
220.77
calcium_mg_usda
1309.63
carbohydrate_g_usda
325.78
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
359.9
cohort
HIV negative MSM
collection_timestamp
4/5/16
constipation_24hr_new
NO
copper_mg_usda
2.24
crp_ng_ml
291.638496
decreased_stools_new
1
dietary_fiber_g_usda
32.69
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2980.76
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
860.17
folic_acid_mcg_usda
233.35
food_folate_mcg_usda
463.83
gender
male
gi_summary_score
1.142857143
glucose
84
gm_csf_pg_ml
0.159003801
gramwt_g_usda
4354.97
hard_stools_new
1
hdl
52
heartburn_new
1
hispanic
No
host age
28
host body habitat
colon
host body mass index
22.2
host body product
feces
host common name
human
host height
181
host scientific name
Homo sapiens
host subject id
HIV183
host taxid
9606
host weight
72.8
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
409.2609475
ifabp_pg_ml
3756.19
il_10_pg_ml
287.9020854
il_12_23p40_pg_ml
178.5074153
il_15_pg_ml
2.119290494
il_16_pg_ml
398.1181437
il_17a_pg_ml
2.317003711
il_22_pg_ml
288.2650614
il_6_pg_ml
1189.562196
il_7_pg_ml
7.753896099
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
1
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
23.73
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6947.368421
ldl
76
leptin
2.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
7792.57
lycopene_mcg_usda
11141.76
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
505.31
mcp_1_pg_ml
8640.848852
metab_disease_score_binary
LOW
metabolic_disease_score
0.93748584
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.01
mfa_18_1_octadecenoic_acid_g_usda
43.52
mfa_20_1_eicosenoic_acid_g_usda
0.42
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.31
mped_add_sug_usda
10.71
mped_dairy_cheese_usda
1.17
mped_dairy_milk_usda
0.5
mped_dairy_total_usda
2.02
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
30.07
mped_discfat_sol_usda
62.34
mped_fruit_citmlb_usda
0.71
mped_fruit_other_usda
1.14
mped_fruit_total_usda
1.85
mped_grain_nwhl_usda
8.23
mped_grain_total_usda
9.51
mped_grain_whl_usda
1.28
mped_legumes_usda
0.37
mped_m_egg_usda
0.42
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.26
mped_m_frank_usda
1.9
mped_m_meat_usda
2.63
mped_m_mpf_usda
7.39
mped_m_nutsd_usda
2.01
mped_m_organ_usda
0.02
mped_m_poult_usda
2.3
mped_m_soy_usda
0.18
mped_vegetable_dpyel_usda
0.47
mped_vegetable_drkgr_usda
0.85
mped_vegetable_other_usda
1.04
mped_vegetable_potato_usda
0.44
mped_vegetable_starcy_usda
0.18
mped_vegetable_tomato_usda
0.56
mped_vegetable_total_usda
3.55
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
38.78
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
20.98
pfa_18_3_octadecatrienoic_acig_g_usda
2.33
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.16
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.1
phosphorus_mg_usda
1981.05
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4526.74
probiotics_1wk
No
protein_g_usda
129.24
race
White
rai_frequency_new
>1 time per week
relationship_status_new
In a relationship but not living together
retinol_mcg_usda
555.9
riboflavin_vitamin_b2_mg_usda
3.08
saa_ng_ml
719.547073
sample name
qiita_sid_13338:13338.St.neg.GLD082
sample type
stool
scd14_pg_ml
1755739.966
scd163_ng_ml
765.3016839
selenium_mcg_usda
156.2
sfa_10_0_decanoic_acid_g_usda
0.68
sfa_12_0_dodecanoic_acid_g_usda
1.09
sfa_14_0_tetradecanoic_acid_g_usda
3.69
sfa_16_0_hexadecanoic_acid_g_usda
21.51
sfa_18_0_octadecanoic_acid_g_usda
9.47
sfa_4_0_butanoic_acid_g_usda
0.94
sfa_6_0_hexanoic_acid_g_usda
0.44
sfa_8_0_octanoic_acid_g_usda
0.37
sodium_mg_usda
5347.31
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.56
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1061.778398
tnf_beta_pg_ml
0.178821475
total_fat_g_usda
121.26
total_folate_mcg_usda
697.48
total_monounsaturated_fatty_acids_g_usda
46.76
total_polyunsaturated_fatty_acids_g_usda
23.94
total_saturated_fatty_acids_g_usda
39.95
total_sugars_g_usda
106.88
triglycerides
63
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
543.5508899
vegf_pg_ml
110.8387679
vitamin_a_rae_mcg_usda
1556.48
vitamin_b12_mcg_usda
6.23
vitamin_b6_mg_usda
3.25
vitamin_c_mg_usda
186.92
vitamin_e_as_alpha_tocopherol_mg_usda
13.06
vitamin_k_mcg_usda
399.25
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.09