13338.St.neg.GLD137
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617110
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:22Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD137
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
not collected
adiponectin
13.5
alcohol_g_usda
23.43
alpha_carotene_mcg_usda
828.07
beta_carotene_mcg_usda
3148.45
beta_cryptoxanthin_mcg_usda
77.61
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
82.5
calcium_mg_usda
2636.41
carbohydrate_g_usda
284.05
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
394.15
cohort
HIV negative MSM
collection_timestamp
1/4/17
constipation_24hr_new
NO
copper_mg_usda
2.32
crp_ng_ml
1548.402073
decreased_stools_new
not collected
dietary_fiber_g_usda
15.9
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2917.19
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
845.86
folic_acid_mcg_usda
323.12
food_folate_mcg_usda
296.09
gender
male
gi_summary_score
not collected
glucose
93
gm_csf_pg_ml
0.372355737
gramwt_g_usda
5615.68
hard_stools_new
not collected
hdl
57
heartburn_new
not collected
hispanic
No
host age
31
host body habitat
colon
host body mass index
23.5
host body product
feces
host common name
human
host height
177.8
host scientific name
Homo sapiens
host subject id
HIV256
host taxid
9606
host weight
74.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
273.4453592
ifabp_pg_ml
7280.626
il_10_pg_ml
365.7451057
il_12_23p40_pg_ml
226.1847317
il_15_pg_ml
5.554118578
il_16_pg_ml
374.4467167
il_17a_pg_ml
3.960475326
il_22_pg_ml
267.282411
il_6_pg_ml
308.7430826
il_7_pg_ml
10.65344884
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
25.81
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
4229.314421
ldl
57
leptin
8.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
1407.64
lycopene_mcg_usda
6782.95
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
530.64
mcp_1_pg_ml
11947.86871
metab_disease_score_binary
LOW
metabolic_disease_score
0.834869374
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.82
mfa_18_1_octadecenoic_acid_g_usda
40.95
mfa_20_1_eicosenoic_acid_g_usda
0.37
mfa_22_1_docosenoic_acid_g_usda
0.15
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.68
mped_add_sug_usda
19.41
mped_dairy_cheese_usda
1.75
mped_dairy_milk_usda
4
mped_dairy_total_usda
5.87
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
27.93
mped_discfat_sol_usda
79.88
mped_fruit_citmlb_usda
0.2
mped_fruit_other_usda
0.35
mped_fruit_total_usda
0.56
mped_grain_nwhl_usda
5.36
mped_grain_total_usda
6.1
mped_grain_whl_usda
0.75
mped_legumes_usda
0.09
mped_m_egg_usda
0.48
mped_m_fish_hi_usda
1.24
mped_m_fish_lo_usda
0.66
mped_m_frank_usda
0.5
mped_m_meat_usda
1.84
mped_m_mpf_usda
4.79
mped_m_nutsd_usda
0.83
mped_m_organ_usda
0.01
mped_m_poult_usda
0.54
mped_m_soy_usda
0.11
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.18
mped_vegetable_other_usda
0.71
mped_vegetable_potato_usda
0.28
mped_vegetable_starcy_usda
0.11
mped_vegetable_tomato_usda
0.41
mped_vegetable_total_usda
1.83
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
Yes
niacin_mg_usda
44.57
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
18.06
pfa_18_3_octadecatrienoic_acig_g_usda
2.47
pfa_18_4_octadecatetraenoic_acid_g_usda
0.04
pfa_20_4_eicosatetraenoic_acid_g_usda
0.16
pfa_20_5_eicosapentaenoic_acid_g_usda
0.21
pfa_22_5_docosapentaenoic_acid_g_usda
0.06
pfa_22_6_docosahexaenoic_acid_g_usda
0.32
phosphorus_mg_usda
2535.71
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4274.09
probiotics_1wk
not collected
protein_g_usda
129.33
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1735.51
riboflavin_vitamin_b2_mg_usda
4.95
saa_ng_ml
500.2126562
sample name
qiita_sid_13338:13338.St.neg.GLD137
sample type
stool
scd14_pg_ml
1820718.803
scd163_ng_ml
454.3661704
selenium_mcg_usda
161.64
sfa_10_0_decanoic_acid_g_usda
1.28
sfa_12_0_dodecanoic_acid_g_usda
1.33
sfa_14_0_tetradecanoic_acid_g_usda
5.77
sfa_16_0_hexadecanoic_acid_g_usda
24.75
sfa_18_0_octadecanoic_acid_g_usda
10.62
sfa_4_0_butanoic_acid_g_usda
1.56
sfa_6_0_hexanoic_acid_g_usda
1.05
sfa_8_0_octanoic_acid_g_usda
0.99
sodium_mg_usda
4196.55
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.87
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
818.3385223
tnf_beta_pg_ml
0.262113902
total_fat_g_usda
125.22
total_folate_mcg_usda
619.06
total_monounsaturated_fatty_acids_g_usda
43.81
total_polyunsaturated_fatty_acids_g_usda
21.46
total_saturated_fatty_acids_g_usda
48.49
total_sugars_g_usda
151.46
triglycerides
71
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
not collected
vcam_1_ng_ml
434.8811618
vegf_pg_ml
113.5361259
vitamin_a_rae_mcg_usda
2032.85
vitamin_b12_mcg_usda
14.19
vitamin_b6_mg_usda
4.25
vitamin_c_mg_usda
135.95
vitamin_e_as_alpha_tocopherol_mg_usda
14.28
vitamin_k_mcg_usda
149.49
watery_diarrhea_24hr_new
NO
zinc_mg_usda
22.58