13338.St.chronic.GLD128.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617047
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD128.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
10.2
alcohol_g_usda
0
alpha_carotene_mcg_usda
583.74
art_years
9
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
3501.56
beta_cryptoxanthin_mcg_usda
42.78
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
1
caffeine_mg_usda
0.84
calcium_mg_usda
779.91
carbohydrate_g_usda
61.86
cd4_cd38_single_positive_cells
59
cd4_count
594
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
2
cd4_nadir
100
cd4_percent
37
cd8_cd38_single_positive_cells
20
cd8_count
546
cd8_hladr_cd38_percent
4
cd8_hladr_single_positive_cells
3
cd8_percent
34
cholesterol_drugs_1mo
No
cholesterol_mg_usda
20.11
cohort
HIV treated
collection_timestamp
7/14/16
constipation_24hr_new
YES
copper_mg_usda
0.44
crp_ng_ml
140.7476554
current_art
Isentress and Truvada
current_art_start_date
1/15/15
decreased_stools_new
1
dietary_fiber_g_usda
8.02
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
354.22
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
473.02
folic_acid_mcg_usda
226.81
food_folate_mcg_usda
87.42
gender
male
gi_summary_score
1.214285714
glucose
97
gm_csf_pg_ml
0.299377551
gramwt_g_usda
1159.35
hard_stools_new
2
hdl
76
heartburn_new
1
hispanic
No
host age
42
host body habitat
colon
host body mass index
21.2
host body product
feces
host common name
human
host height
188
host scientific name
Homo sapiens
host subject id
HIV220
host taxid
9606
host weight
165
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
317.0743285
ifabp_pg_ml
2116.852
il_10_pg_ml
223.2323147
il_12_23p40_pg_ml
124.450946
il_15_pg_ml
6.032518946
il_16_pg_ml
164.5056486
il_17a_pg_ml
2.810141055
il_22_pg_ml
202.1561236
il_6_pg_ml
339.0179624
il_7_pg_ml
11.16072076
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
2007
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.09
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5966.903073
ldl
89
leptin
3.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
3983.62
lycopene_mcg_usda
1399.11
lymphocyte_count
1606
lymphocyte_percent
30.3
magnesium_mg_usda
128.56
mcp_1_pg_ml
7915.885941
metab_disease_score_binary
LOW
metabolic_disease_score
0.858253527
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.15
mfa_18_1_octadecenoic_acid_g_usda
1.66
mfa_20_1_eicosenoic_acid_g_usda
0.05
mfa_22_1_docosenoic_acid_g_usda
0.06
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
1.7
mped_dairy_cheese_usda
0
mped_dairy_milk_usda
0.93
mped_dairy_total_usda
1.04
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
0.49
mped_discfat_sol_usda
1.31
mped_fruit_citmlb_usda
0.21
mped_fruit_other_usda
0.28
mped_fruit_total_usda
0.49
mped_grain_nwhl_usda
0.87
mped_grain_total_usda
1.19
mped_grain_whl_usda
0.31
mped_legumes_usda
0
mped_m_egg_usda
0
mped_m_fish_hi_usda
0.58
mped_m_fish_lo_usda
0.06
mped_m_frank_usda
0
mped_m_meat_usda
0
mped_m_mpf_usda
0.64
mped_m_nutsd_usda
0.07
mped_m_organ_usda
0
mped_m_poult_usda
0
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.06
mped_vegetable_drkgr_usda
0.18
mped_vegetable_other_usda
0.04
mped_vegetable_potato_usda
0
mped_vegetable_starcy_usda
0
mped_vegetable_tomato_usda
0.09
mped_vegetable_total_usda
0.37
nadir_date
not collected
nadir_report
Patient report
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
12.01
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
0.95
pfa_18_3_octadecatrienoic_acig_g_usda
0.25
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.02
pfa_20_5_eicosapentaenoic_acid_g_usda
0.08
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.13
phosphorus_mg_usda
503.15
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1072.35
probiotics_1wk
No
protein_g_usda
19.84
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
245.83
riboflavin_vitamin_b2_mg_usda
1.43
saa_ng_ml
1137.932068
sample name
qiita_sid_13338:13338.St.chronic.GLD128.T
sample type
stool
scd14_pg_ml
2621738.423
scd163_ng_ml
373.7368281
selenium_mcg_usda
27.9
sfa_10_0_decanoic_acid_g_usda
0.03
sfa_12_0_dodecanoic_acid_g_usda
0.11
sfa_14_0_tetradecanoic_acid_g_usda
0.15
sfa_16_0_hexadecanoic_acid_g_usda
0.82
sfa_18_0_octadecanoic_acid_g_usda
0.22
sfa_4_0_butanoic_acid_g_usda
0.03
sfa_6_0_hexanoic_acid_g_usda
0.01
sfa_8_0_octanoic_acid_g_usda
0.02
sodium_mg_usda
503.66
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.01
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
446.0795051
tnf_beta_pg_ml
0.22654792
total_fat_g_usda
5.46
total_folate_mcg_usda
314.24
total_monounsaturated_fatty_acids_g_usda
1.97
total_polyunsaturated_fatty_acids_g_usda
1.49
total_saturated_fatty_acids_g_usda
1.52
total_sugars_g_usda
31.05
triglycerides
127
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
399.6323517
vegf_pg_ml
34.83805778
viral load
0
vitamin_a_rae_mcg_usda
563.7
vitamin_b12_mcg_usda
5.15
vitamin_b6_mg_usda
1.53
vitamin_c_mg_usda
43.68
vitamin_e_as_alpha_tocopherol_mg_usda
6.27
vitamin_k_mcg_usda
181.44
watery_diarrhea_24hr_new
NO
zinc_mg_usda
7.9