13338.St.chronic.GLD020.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617017
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD020.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
2.7
alcohol_g_usda
1.98
alpha_carotene_mcg_usda
1348.76
art_years
14
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
6805.27
beta_cryptoxanthin_mcg_usda
818.8
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
526.62
calcium_mg_usda
3451.29
carbohydrate_g_usda
477.85
cd4_cd38_single_positive_cells
76
cd4_count
1200
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
1
cd4_nadir
not collected
cd4_percent
35
cd8_cd38_single_positive_cells
11
cd8_count
1166
cd8_hladr_cd38_percent
2
cd8_hladr_single_positive_cells
2
cd8_percent
34
cholesterol_drugs_1mo
No
cholesterol_mg_usda
724.12
cohort
HIV treated LD
collection_timestamp
5/12/15
constipation_24hr_new
NO
copper_mg_usda
2.93
crp_ng_ml
2477.103877
current_art
Stribild
current_art_start_date
5/5/14
decreased_stools_new
1
dietary_fiber_g_usda
23.06
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3923
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
750.41
folic_acid_mcg_usda
106.83
food_folate_mcg_usda
568.69
gender
male
gi_summary_score
1.142857143
glucose
93
gm_csf_pg_ml
0.204917759
gramwt_g_usda
8225.77
hard_stools_new
1
hdl
41
heartburn_new
1
hispanic
No
host age
54
host body habitat
colon
host body mass index
25.3
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV152
host taxid
9606
host weight
74.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
346.5931633
ifabp_pg_ml
5260.12
il_10_pg_ml
133.771802
il_12_23p40_pg_ml
88.9202713
il_15_pg_ml
3.890531524
il_16_pg_ml
203.3356864
il_17a_pg_ml
4.373828475
il_22_pg_ml
579.7391112
il_6_pg_ml
333.1172975
il_7_pg_ml
6.425768857
incomplete_evacuation_new
2
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
2001
insulin
3
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
20.46
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
5881.756757
ldl
126
leptin
2.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
3802.88
lycopene_mcg_usda
56495.29
lymphocyte_count
3429
lymphocyte_percent
43.4
magnesium_mg_usda
595.03
mcp_1_pg_ml
5680.502258
metab_disease_score_binary
LOW
metabolic_disease_score
1.246407702
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.84
mfa_18_1_octadecenoic_acid_g_usda
49.12
mfa_20_1_eicosenoic_acid_g_usda
0.25
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.15
mped_add_sug_usda
38.19
mped_dairy_cheese_usda
1.36
mped_dairy_milk_usda
6.41
mped_dairy_total_usda
7.78
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
24.94
mped_discfat_sol_usda
117.79
mped_fruit_citmlb_usda
2.49
mped_fruit_other_usda
0.35
mped_fruit_total_usda
2.85
mped_grain_nwhl_usda
4.61
mped_grain_total_usda
4.85
mped_grain_whl_usda
0.24
mped_legumes_usda
0.08
mped_m_egg_usda
1.59
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.04
mped_m_frank_usda
0.33
mped_m_meat_usda
3.17
mped_m_mpf_usda
3.88
mped_m_nutsd_usda
0.37
mped_m_organ_usda
0.02
mped_m_poult_usda
0.31
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.11
mped_vegetable_drkgr_usda
0.32
mped_vegetable_other_usda
1
mped_vegetable_potato_usda
1.53
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
2.57
mped_vegetable_total_usda
5.57
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
not collected
niacin_mg_usda
27.69
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
21.03
pfa_18_3_octadecatrienoic_acig_g_usda
3.26
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.2
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
3110.2
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
7974.04
probiotics_1wk
No
protein_g_usda
148.1
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
992.36
riboflavin_vitamin_b2_mg_usda
6
saa_ng_ml
1896.434404
sample name
qiita_sid_13338:13338.St.chronic.GLD020.T
sample type
stool
scd14_pg_ml
1198445.864
scd163_ng_ml
432.8445675
selenium_mcg_usda
164.32
sfa_10_0_decanoic_acid_g_usda
1.87
sfa_12_0_dodecanoic_acid_g_usda
2.36
sfa_14_0_tetradecanoic_acid_g_usda
8.13
sfa_16_0_hexadecanoic_acid_g_usda
34.46
sfa_18_0_octadecanoic_acid_g_usda
16.33
sfa_4_0_butanoic_acid_g_usda
2.17
sfa_6_0_hexanoic_acid_g_usda
1.63
sfa_8_0_octanoic_acid_g_usda
1.49
sodium_mg_usda
7115.59
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.79
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
397.7509664
tnf_beta_pg_ml
0.199712098
total_fat_g_usda
165.64
total_folate_mcg_usda
675.76
total_monounsaturated_fatty_acids_g_usda
52.26
total_polyunsaturated_fatty_acids_g_usda
24.79
total_saturated_fatty_acids_g_usda
69.57
total_sugars_g_usda
312.62
triglycerides
66
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
370.4019037
vegf_pg_ml
116.2733302
viral load
40
vitamin_a_rae_mcg_usda
1646.38
vitamin_b12_mcg_usda
12.04
vitamin_b6_mg_usda
3.88
vitamin_c_mg_usda
390.67
vitamin_e_as_alpha_tocopherol_mg_usda
12.53
vitamin_k_mcg_usda
287.36
watery_diarrhea_24hr_new
NO
zinc_mg_usda
21.95