13338.St.neg.GLD008
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617075
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD008
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.2
alcohol_g_usda
19.72
alpha_carotene_mcg_usda
635.43
beta_carotene_mcg_usda
10666.61
beta_cryptoxanthin_mcg_usda
95.51
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
598.86
calcium_mg_usda
967.29
carbohydrate_g_usda
214.75
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
212.14
cohort
HIV negative MSM
collection_timestamp
2/13/15
constipation_24hr_new
NO
copper_mg_usda
3.2
crp_ng_ml
367.0744525
decreased_stools_new
3
dietary_fiber_g_usda
26.55
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2387.08
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
756.12
folic_acid_mcg_usda
118.89
food_folate_mcg_usda
553.69
gender
male
gi_summary_score
1.785714286
glucose
85
gm_csf_pg_ml
0.276027512
gramwt_g_usda
11055.43
hard_stools_new
3
hdl
39
heartburn_new
2
hispanic
No
host age
35
host body habitat
colon
host body mass index
25
host body product
feces
host common name
human
host height
185
host scientific name
Homo sapiens
host subject id
HIV144
host taxid
9606
host weight
84.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
286.158909
ifabp_pg_ml
1716.97
il_10_pg_ml
183.4746067
il_12_23p40_pg_ml
98.96079853
il_15_pg_ml
2.618383072
il_16_pg_ml
308.4992333
il_17a_pg_ml
2.399393778
il_22_pg_ml
345.3846591
il_6_pg_ml
171.743854
il_7_pg_ml
5.292375657
incomplete_evacuation_new
1
increased_flatus_new
3
increased_stools_new
1
insulin
3
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
18.94
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
5814.189189
ldl
107
leptin
2.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
12389.1
lycopene_mcg_usda
10535.81
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
706.37
mcp_1_pg_ml
9727.44824
metab_disease_score_binary
LOW
metabolic_disease_score
1.210746749
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.2
mfa_18_1_octadecenoic_acid_g_usda
48.51
mfa_20_1_eicosenoic_acid_g_usda
0.75
mfa_22_1_docosenoic_acid_g_usda
0.07
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
1.39
mped_add_sug_usda
8.61
mped_dairy_cheese_usda
0.33
mped_dairy_milk_usda
0.44
mped_dairy_total_usda
0.78
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
52.73
mped_discfat_sol_usda
25.01
mped_fruit_citmlb_usda
0.29
mped_fruit_other_usda
0.98
mped_fruit_total_usda
1.27
mped_grain_nwhl_usda
3.48
mped_grain_total_usda
3.89
mped_grain_whl_usda
0.4
mped_legumes_usda
0.06
mped_m_egg_usda
0.67
mped_m_fish_hi_usda
0.92
mped_m_fish_lo_usda
0.26
mped_m_frank_usda
0.24
mped_m_meat_usda
2.41
mped_m_mpf_usda
5.85
mped_m_nutsd_usda
7.45
mped_m_organ_usda
0
mped_m_poult_usda
2.02
mped_m_soy_usda
0.06
mped_vegetable_dpyel_usda
0.24
mped_vegetable_drkgr_usda
1.9
mped_vegetable_other_usda
0.73
mped_vegetable_potato_usda
0.25
mped_vegetable_starcy_usda
0.13
mped_vegetable_tomato_usda
0.58
mped_vegetable_total_usda
3.83
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
44.24
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
24.51
pfa_18_3_octadecatrienoic_acig_g_usda
1.41
pfa_18_4_octadecatetraenoic_acid_g_usda
0.03
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.14
pfa_22_5_docosapentaenoic_acid_g_usda
0.04
pfa_22_6_docosahexaenoic_acid_g_usda
0.22
phosphorus_mg_usda
1617.33
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4877.8
probiotics_1wk
No
protein_g_usda
110.76
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
475.93
riboflavin_vitamin_b2_mg_usda
3.05
saa_ng_ml
352.753096
sample name
qiita_sid_13338:13338.St.neg.GLD008
sample type
stool
scd14_pg_ml
1781473.582
scd163_ng_ml
1147.648907
selenium_mcg_usda
132.87
sfa_10_0_decanoic_acid_g_usda
0.23
sfa_12_0_dodecanoic_acid_g_usda
0.76
sfa_14_0_tetradecanoic_acid_g_usda
1.41
sfa_16_0_hexadecanoic_acid_g_usda
15.01
sfa_18_0_octadecanoic_acid_g_usda
5.96
sfa_4_0_butanoic_acid_g_usda
0.23
sfa_6_0_hexanoic_acid_g_usda
0.12
sfa_8_0_octanoic_acid_g_usda
0.16
sodium_mg_usda
3789.07
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.03
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
726.5373464
tnf_beta_pg_ml
0.204471446
total_fat_g_usda
114.58
total_folate_mcg_usda
674.12
total_monounsaturated_fatty_acids_g_usda
50.98
total_polyunsaturated_fatty_acids_g_usda
26.82
total_saturated_fatty_acids_g_usda
26.14
total_sugars_g_usda
77.76
triglycerides
79
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
511.5840125
vegf_pg_ml
118.317148
vitamin_a_rae_mcg_usda
1395.57
vitamin_b12_mcg_usda
4.92
vitamin_b6_mg_usda
3.73
vitamin_c_mg_usda
134.49
vitamin_e_as_alpha_tocopherol_mg_usda
20.22
vitamin_k_mcg_usda
592.43
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.58