13338.St.neg.GLD011
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617077
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD011
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7.4
alcohol_g_usda
3.36
alpha_carotene_mcg_usda
475.88
beta_carotene_mcg_usda
2974.45
beta_cryptoxanthin_mcg_usda
76.12
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
124.91
calcium_mg_usda
843.2
carbohydrate_g_usda
189.57
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
193.52
cohort
HIV negative MSM
collection_timestamp
1/21/15
constipation_24hr_new
NO
copper_mg_usda
1.04
crp_ng_ml
612.8543753
decreased_stools_new
1
dietary_fiber_g_usda
12.66
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1591.74
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
376.12
folic_acid_mcg_usda
111.89
food_folate_mcg_usda
185.9
gender
male
gi_summary_score
2.071428571
glucose
84
gm_csf_pg_ml
0.176747338
gramwt_g_usda
2425.83
hard_stools_new
2
hdl
36
heartburn_new
3
hispanic
No
host age
31
host body habitat
colon
host body mass index
25.2
host body product
feces
host common name
human
host height
181
host scientific name
Homo sapiens
host subject id
HIV146
host taxid
9606
host weight
82.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
267.002481
ifabp_pg_ml
6182.701
il_10_pg_ml
211.4589247
il_12_23p40_pg_ml
179.2027039
il_15_pg_ml
3.791547769
il_16_pg_ml
312.3330932
il_17a_pg_ml
3.453086204
il_22_pg_ml
218.521791
il_6_pg_ml
285.4565566
il_7_pg_ml
16.03295927
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
3
insulin
11
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
11.11
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8204.391892
ldl
83
leptin
10.1
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2041.44
lycopene_mcg_usda
6758.33
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
235.31
mcp_1_pg_ml
8958.261202
metab_disease_score_binary
LOW
metabolic_disease_score
1.315212425
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1
mfa_18_1_octadecenoic_acid_g_usda
23.59
mfa_20_1_eicosenoic_acid_g_usda
0.16
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.24
mped_add_sug_usda
13.95
mped_dairy_cheese_usda
0.74
mped_dairy_milk_usda
0.72
mped_dairy_total_usda
1.68
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
16.28
mped_discfat_sol_usda
37.6
mped_fruit_citmlb_usda
0.21
mped_fruit_other_usda
0.35
mped_fruit_total_usda
0.55
mped_grain_nwhl_usda
4.2
mped_grain_total_usda
4.68
mped_grain_whl_usda
0.47
mped_legumes_usda
0.1
mped_m_egg_usda
0.26
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.03
mped_m_frank_usda
0.57
mped_m_meat_usda
1.38
mped_m_mpf_usda
2.97
mped_m_nutsd_usda
0.63
mped_m_organ_usda
0
mped_m_poult_usda
0.99
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.32
mped_vegetable_other_usda
0.58
mped_vegetable_potato_usda
0.31
mped_vegetable_starcy_usda
0.03
mped_vegetable_tomato_usda
0.37
mped_vegetable_total_usda
1.75
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
19.74
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
9.79
pfa_18_3_octadecatrienoic_acig_g_usda
0.89
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
1070.11
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2171.29
probiotics_1wk
No
protein_g_usda
61.56
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
396.49
riboflavin_vitamin_b2_mg_usda
1.94
saa_ng_ml
594.8877138
sample name
qiita_sid_13338:13338.St.neg.GLD011
sample type
stool
scd14_pg_ml
1085637.819
scd163_ng_ml
889.4609191
selenium_mcg_usda
74.46
sfa_10_0_decanoic_acid_g_usda
0.47
sfa_12_0_dodecanoic_acid_g_usda
0.98
sfa_14_0_tetradecanoic_acid_g_usda
2.19
sfa_16_0_hexadecanoic_acid_g_usda
11.86
sfa_18_0_octadecanoic_acid_g_usda
5.91
sfa_4_0_butanoic_acid_g_usda
0.63
sfa_6_0_hexanoic_acid_g_usda
0.3
sfa_8_0_octanoic_acid_g_usda
0.26
sodium_mg_usda
2553.97
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.27
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
778.4406543
tnf_beta_pg_ml
0.382475289
total_fat_g_usda
65.14
total_folate_mcg_usda
298.79
total_monounsaturated_fatty_acids_g_usda
25.38
total_polyunsaturated_fatty_acids_g_usda
11.03
total_saturated_fatty_acids_g_usda
23.46
total_sugars_g_usda
89.21
triglycerides
101
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
3
vcam_1_ng_ml
414.4271284
vegf_pg_ml
269.7556683
vitamin_a_rae_mcg_usda
667.32
vitamin_b12_mcg_usda
4.12
vitamin_b6_mg_usda
1.81
vitamin_c_mg_usda
72.85
vitamin_e_as_alpha_tocopherol_mg_usda
5.78
vitamin_k_mcg_usda
117.26
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.39