13338.St.neg.DM057.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617070
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM057.1
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7.9
alcohol_g_usda
5.2
alpha_carotene_mcg_usda
89.88
beta_carotene_mcg_usda
1094.08
beta_cryptoxanthin_mcg_usda
23.72
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
0.75
calcium_mg_usda
1299.67
carbohydrate_g_usda
143.99
cd4_cd38_single_positive_cells
74
cd4_count
not collected
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_percent
not collected
cd8_cd38_single_positive_cells
41
cd8_count
not collected
cd8_hladr_cd38_percent
9
cd8_hladr_single_positive_cells
3
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
73.28
cohort
HIV negative MSM
collection_timestamp
10/18/17
constipation_24hr_new
NO
copper_mg_usda
1.45
crp_ng_ml
9231.755488
decreased_stools_new
1
dietary_fiber_g_usda
16.83
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1366.1
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
650.44
folic_acid_mcg_usda
256.07
food_folate_mcg_usda
215.02
gender
male
gi_summary_score
1.357142857
glucose
78
gm_csf_pg_ml
0.279115185
gramwt_g_usda
3616.44
hard_stools_new
1
hdl
51
heartburn_new
2
hispanic
No
host age
29
host body habitat
colon
host body mass index
23.5
host body product
feces
host common name
human
host height
182
host scientific name
Homo sapiens
host subject id
HIV284
host taxid
9606
host weight
77.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
314.5963459
ifabp_pg_ml
998.892
il_10_pg_ml
274.2977225
il_12_23p40_pg_ml
186.8937322
il_15_pg_ml
4.150445396
il_16_pg_ml
341.1973983
il_17a_pg_ml
7.985736267
il_22_pg_ml
468.0005389
il_6_pg_ml
316.3132352
il_7_pg_ml
16.50009136
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
insulin
4
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
18.33
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
9855.791962
ldl
78
leptin
7.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
948.39
lycopene_mcg_usda
6798.83
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
342.34
mcp_1_pg_ml
9674.40061
metab_disease_score_binary
LOW
metabolic_disease_score
0.95658606
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.46
mfa_18_1_octadecenoic_acid_g_usda
21.49
mfa_20_1_eicosenoic_acid_g_usda
0.34
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.4
mped_add_sug_usda
3.04
mped_dairy_cheese_usda
0.05
mped_dairy_milk_usda
1.64
mped_dairy_total_usda
1.69
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
24.32
mped_discfat_sol_usda
21.58
mped_fruit_citmlb_usda
0.01
mped_fruit_other_usda
0.39
mped_fruit_total_usda
0.4
mped_grain_nwhl_usda
0.86
mped_grain_total_usda
2.03
mped_grain_whl_usda
1.17
mped_legumes_usda
0.18
mped_m_egg_usda
0.01
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
0
mped_m_meat_usda
0.1
mped_m_mpf_usda
0.14
mped_m_nutsd_usda
3.33
mped_m_organ_usda
0
mped_m_poult_usda
0.03
mped_m_soy_usda
2.25
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.13
mped_vegetable_other_usda
0.17
mped_vegetable_potato_usda
0.01
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.31
mped_vegetable_total_usda
0.65
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
Yes
niacin_mg_usda
23.59
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.99
pfa_18_3_octadecatrienoic_acig_g_usda
1.01
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0
phosphorus_mg_usda
1435.7
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2501.2
probiotics_1wk
not collected
protein_g_usda
63.82
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
453.24
riboflavin_vitamin_b2_mg_usda
2.45
saa_ng_ml
6167.14465
sample name
qiita_sid_13338:13338.St.neg.DM057.1
sample type
stool
scd14_pg_ml
1732522.073
scd163_ng_ml
705.8371927
selenium_mcg_usda
36.23
sfa_10_0_decanoic_acid_g_usda
0.24
sfa_12_0_dodecanoic_acid_g_usda
0.49
sfa_14_0_tetradecanoic_acid_g_usda
1.79
sfa_16_0_hexadecanoic_acid_g_usda
9.47
sfa_18_0_octadecanoic_acid_g_usda
3.83
sfa_4_0_butanoic_acid_g_usda
0.51
sfa_6_0_hexanoic_acid_g_usda
0.32
sfa_8_0_octanoic_acid_g_usda
0.17
sodium_mg_usda
1863.46
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.65
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
648.4223901
tnf_beta_pg_ml
0.316368344
total_fat_g_usda
59.21
total_folate_mcg_usda
471.16
total_monounsaturated_fatty_acids_g_usda
22.64
total_polyunsaturated_fatty_acids_g_usda
14.18
total_saturated_fatty_acids_g_usda
18.61
total_sugars_g_usda
71.03
triglycerides
71
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
510.1184848
vegf_pg_ml
54.05919678
vitamin_a_rae_mcg_usda
551.01
vitamin_b12_mcg_usda
4.32
vitamin_b6_mg_usda
2.18
vitamin_c_mg_usda
33.19
vitamin_e_as_alpha_tocopherol_mg_usda
9.29
vitamin_k_mcg_usda
63.18
watery_diarrhea_24hr_new
NO
zinc_mg_usda
12.51