13338.St.neg.GLD161
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617113
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:22Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD161
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
5.6
alcohol_g_usda
15.92
alpha_carotene_mcg_usda
855.26
beta_carotene_mcg_usda
2388.14
beta_cryptoxanthin_mcg_usda
140.21
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
445.08
calcium_mg_usda
545.14
carbohydrate_g_usda
293.95
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
81.83
cohort
HIV negative MSM
collection_timestamp
7/26/17
constipation_24hr_new
NO
copper_mg_usda
1.33
crp_ng_ml
1367.52269
decreased_stools_new
1
dietary_fiber_g_usda
10.86
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1762.84
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
167.49
folic_acid_mcg_usda
10.64
food_folate_mcg_usda
149.4
gender
male
gi_summary_score
1.357142857
glucose
123
gm_csf_pg_ml
0.496631042
gramwt_g_usda
9751.64
hard_stools_new
1
hdl
34
heartburn_new
2
hispanic
No
host age
42
host body habitat
colon
host body mass index
28.9
host body product
feces
host common name
human
host height
175
host scientific name
Homo sapiens
host subject id
HIV293
host taxid
9606
host weight
88.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
581.580828
ifabp_pg_ml
2754.958
il_10_pg_ml
419.5711092
il_12_23p40_pg_ml
262.2862874
il_15_pg_ml
5.223413926
il_16_pg_ml
448.1421706
il_17a_pg_ml
4.894194051
il_22_pg_ml
248.4117079
il_6_pg_ml
358.878567
il_7_pg_ml
10.83195504
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
insulin
9
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
6.09
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11096.92671
ldl
123
leptin
15.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1309.42
lycopene_mcg_usda
1500.38
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
254.92
mcp_1_pg_ml
12186.27813
metab_disease_score_binary
HIGH
metabolic_disease_score
1.668194249
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.57
mfa_18_1_octadecenoic_acid_g_usda
16.97
mfa_20_1_eicosenoic_acid_g_usda
0.22
mfa_22_1_docosenoic_acid_g_usda
0
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.09
mped_add_sug_usda
53.65
mped_dairy_cheese_usda
0.56
mped_dairy_milk_usda
0.04
mped_dairy_total_usda
0.61
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
16.2
mped_discfat_sol_usda
13.81
mped_fruit_citmlb_usda
0.07
mped_fruit_other_usda
1.12
mped_fruit_total_usda
1.19
mped_grain_nwhl_usda
0.64
mped_grain_total_usda
0.68
mped_grain_whl_usda
0.04
mped_legumes_usda
0.03
mped_m_egg_usda
0.04
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
0.01
mped_m_meat_usda
1.3
mped_m_mpf_usda
1.89
mped_m_nutsd_usda
1.98
mped_m_organ_usda
0
mped_m_poult_usda
0.57
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.15
mped_vegetable_drkgr_usda
0.07
mped_vegetable_other_usda
0.47
mped_vegetable_potato_usda
0.08
mped_vegetable_starcy_usda
0.51
mped_vegetable_tomato_usda
0.08
mped_vegetable_total_usda
1.34
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
12.85
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
6.98
pfa_18_3_octadecatrienoic_acig_g_usda
0.37
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.04
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
815.49
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1796.97
probiotics_1wk
No
protein_g_usda
41.36
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
85.56
riboflavin_vitamin_b2_mg_usda
1.01
saa_ng_ml
7544.288706
sample name
qiita_sid_13338:13338.St.neg.GLD161
sample type
stool
scd14_pg_ml
1394233.244
scd163_ng_ml
1290.730372
selenium_mcg_usda
35.08
sfa_10_0_decanoic_acid_g_usda
0.23
sfa_12_0_dodecanoic_acid_g_usda
0.68
sfa_14_0_tetradecanoic_acid_g_usda
1.24
sfa_16_0_hexadecanoic_acid_g_usda
6.82
sfa_18_0_octadecanoic_acid_g_usda
2.75
sfa_4_0_butanoic_acid_g_usda
0.27
sfa_6_0_hexanoic_acid_g_usda
0.13
sfa_8_0_octanoic_acid_g_usda
0.14
sodium_mg_usda
1553.97
statin_type
lipitor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
0.64
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
758.9485038
tnf_beta_pg_ml
0.497734261
total_fat_g_usda
42.83
total_folate_mcg_usda
160.03
total_monounsaturated_fatty_acids_g_usda
17.98
total_polyunsaturated_fatty_acids_g_usda
7.49
total_saturated_fatty_acids_g_usda
13.1
total_sugars_g_usda
235.07
triglycerides
211
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
595.157484
vegf_pg_ml
54.84230909
vitamin_a_rae_mcg_usda
326
vitamin_b12_mcg_usda
1.52
vitamin_b6_mg_usda
1.13
vitamin_c_mg_usda
59.27
vitamin_e_as_alpha_tocopherol_mg_usda
4.87
vitamin_k_mcg_usda
54.03
watery_diarrhea_24hr_new
YES
zinc_mg_usda
6.21