13338.St.chronic.GLD025.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617021
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD025.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
73
alcohol_g_usda
14.89
alpha_carotene_mcg_usda
399.73
art_years
not collected
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2749.98
beta_cryptoxanthin_mcg_usda
73.74
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
19.28
calcium_mg_usda
1366.86
carbohydrate_g_usda
323.23
cd4_cd38_single_positive_cells
45
cd4_count
622
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
2
cd4_nadir
not collected
cd4_percent
26
cd8_cd38_single_positive_cells
12
cd8_count
1339
cd8_hladr_cd38_percent
7
cd8_hladr_single_positive_cells
20
cd8_percent
56
cholesterol_drugs_1mo
No
cholesterol_mg_usda
277.76
cohort
HIV treated LD
collection_timestamp
3/26/15
constipation_24hr_new
NO
copper_mg_usda
2.23
crp_ng_ml
not collected
current_art
epzicom & tivicay
current_art_start_date
1/1/14
decreased_stools_new
1
dietary_fiber_g_usda
30.97
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3127.01
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
584.14
folic_acid_mcg_usda
156.53
food_folate_mcg_usda
318.2
gender
male
gi_summary_score
1.857142857
glucose
121
gm_csf_pg_ml
not collected
gramwt_g_usda
2952.06
hard_stools_new
2
hdl
51
heartburn_new
2
hispanic
No
host age
67
host body habitat
colon
host body mass index
29.7
host body product
feces
host common name
human
host height
175
host scientific name
Homo sapiens
host subject id
HIV154
host taxid
9606
host weight
90.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
not collected
insulin
9
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
19.13
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
107
leptin
13.9
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2281.51
lycopene_mcg_usda
8706.65
lymphocyte_count
2391.9
lymphocyte_percent
46.9
magnesium_mg_usda
471.47
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
0.614649441
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.95
mfa_18_1_octadecenoic_acid_g_usda
55.48
mfa_20_1_eicosenoic_acid_g_usda
0.5
mfa_22_1_docosenoic_acid_g_usda
0.06
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
1
mped_add_sug_usda
13.98
mped_dairy_cheese_usda
1.14
mped_dairy_milk_usda
1.55
mped_dairy_total_usda
2.76
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
46.04
mped_discfat_sol_usda
73.93
mped_fruit_citmlb_usda
0.16
mped_fruit_other_usda
1.6
mped_fruit_total_usda
1.76
mped_grain_nwhl_usda
6.66
mped_grain_total_usda
7.46
mped_grain_whl_usda
0.8
mped_legumes_usda
0.35
mped_m_egg_usda
0.19
mped_m_fish_hi_usda
0.28
mped_m_fish_lo_usda
0.42
mped_m_frank_usda
0.86
mped_m_meat_usda
2.97
mped_m_mpf_usda
5.52
mped_m_nutsd_usda
3.57
mped_m_organ_usda
0.01
mped_m_poult_usda
0.97
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.08
mped_vegetable_drkgr_usda
0.15
mped_vegetable_other_usda
1.09
mped_vegetable_potato_usda
0.92
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.56
mped_vegetable_total_usda
2.86
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
not collected
niacin_mg_usda
29.59
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
27.26
pfa_18_3_octadecatrienoic_acig_g_usda
2.6
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
1954.39
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4300.81
probiotics_1wk
No
protein_g_usda
116.38
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
497.53
riboflavin_vitamin_b2_mg_usda
2.64
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.chronic.GLD025.T
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
151.48
sfa_10_0_decanoic_acid_g_usda
0.77
sfa_12_0_dodecanoic_acid_g_usda
1.7
sfa_14_0_tetradecanoic_acid_g_usda
3.81
sfa_16_0_hexadecanoic_acid_g_usda
24.08
sfa_18_0_octadecanoic_acid_g_usda
12.2
sfa_4_0_butanoic_acid_g_usda
1.03
sfa_6_0_hexanoic_acid_g_usda
0.52
sfa_8_0_octanoic_acid_g_usda
0.43
sodium_mg_usda
4715.95
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.01
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
146.8
total_folate_mcg_usda
474.72
total_monounsaturated_fatty_acids_g_usda
59.2
total_polyunsaturated_fatty_acids_g_usda
30.73
total_saturated_fatty_acids_g_usda
46.31
total_sugars_g_usda
124.55
triglycerides
127
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
viral load
20
vitamin_a_rae_mcg_usda
746.2
vitamin_b12_mcg_usda
6.35
vitamin_b6_mg_usda
2.73
vitamin_c_mg_usda
87.35
vitamin_e_as_alpha_tocopherol_mg_usda
13.26
vitamin_k_mcg_usda
149.43
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.12