13338.St.neg.GLD102
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617100
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD102
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6
alcohol_g_usda
12.74
alpha_carotene_mcg_usda
298.37
beta_carotene_mcg_usda
6747.71
beta_cryptoxanthin_mcg_usda
232.31
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
238.27
calcium_mg_usda
1854.02
carbohydrate_g_usda
191.63
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
558.08
cohort
HIV negative MSM
collection_timestamp
9/8/16
constipation_24hr_new
YES
copper_mg_usda
1.97
crp_ng_ml
715.2015448
decreased_stools_new
2
dietary_fiber_g_usda
19.13
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2429.7
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
654.58
folic_acid_mcg_usda
90.05
food_folate_mcg_usda
501.58
gender
male
gi_summary_score
1.5
glucose
98
gm_csf_pg_ml
0.233748633
gramwt_g_usda
3766.88
hard_stools_new
1
hdl
54
heartburn_new
2
hispanic
No
host age
28
host body habitat
colon
host body mass index
27.5
host body product
feces
host common name
human
host height
165.1
host scientific name
Homo sapiens
host subject id
HIV235
host taxid
9606
host weight
74.8
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
378.7187524
ifabp_pg_ml
5170.937
il_10_pg_ml
482.2335335
il_12_23p40_pg_ml
75.46519414
il_15_pg_ml
5.14475444
il_16_pg_ml
511.7177629
il_17a_pg_ml
5.431424995
il_22_pg_ml
510.4742163
il_6_pg_ml
290.4981111
il_7_pg_ml
19.32259625
incomplete_evacuation_new
2
increased_flatus_new
1
increased_stools_new
3
insulin
9
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
16.71
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14654.13534
ldl
146
leptin
28.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
12059.52
lycopene_mcg_usda
3571.16
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
488.53
mcp_1_pg_ml
11127.96067
metab_disease_score_binary
HIGH
metabolic_disease_score
1.513283182
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.16
mfa_18_1_octadecenoic_acid_g_usda
45
mfa_20_1_eicosenoic_acid_g_usda
0.44
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.93
mped_add_sug_usda
8.65
mped_dairy_cheese_usda
3.79
mped_dairy_milk_usda
0.16
mped_dairy_total_usda
4.17
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
38.01
mped_discfat_sol_usda
59.98
mped_fruit_citmlb_usda
0.69
mped_fruit_other_usda
0.71
mped_fruit_total_usda
1.4
mped_grain_nwhl_usda
3.36
mped_grain_total_usda
3.93
mped_grain_whl_usda
0.57
mped_legumes_usda
0.12
mped_m_egg_usda
1.53
mped_m_fish_hi_usda
0.43
mped_m_fish_lo_usda
1.02
mped_m_frank_usda
0.9
mped_m_meat_usda
1.1
mped_m_mpf_usda
4.48
mped_m_nutsd_usda
4.29
mped_m_organ_usda
0
mped_m_poult_usda
1.02
mped_m_soy_usda
0.22
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
1.77
mped_vegetable_other_usda
0.82
mped_vegetable_potato_usda
0.09
mped_vegetable_starcy_usda
0.02
mped_vegetable_tomato_usda
0.21
mped_vegetable_total_usda
2.98
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
26.02
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
21.4
pfa_18_3_octadecatrienoic_acig_g_usda
2.08
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.21
pfa_20_5_eicosapentaenoic_acid_g_usda
0.09
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.16
phosphorus_mg_usda
2274.3
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3569.91
probiotics_1wk
No
protein_g_usda
122.65
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
594.04
riboflavin_vitamin_b2_mg_usda
2.93
saa_ng_ml
2925.463466
sample name
qiita_sid_13338:13338.St.neg.GLD102
sample type
stool
scd14_pg_ml
1206527.606
scd163_ng_ml
563.4960169
selenium_mcg_usda
163.55
sfa_10_0_decanoic_acid_g_usda
0.92
sfa_12_0_dodecanoic_acid_g_usda
1.29
sfa_14_0_tetradecanoic_acid_g_usda
4.68
sfa_16_0_hexadecanoic_acid_g_usda
22.95
sfa_18_0_octadecanoic_acid_g_usda
9.41
sfa_4_0_butanoic_acid_g_usda
1.38
sfa_6_0_hexanoic_acid_g_usda
0.57
sfa_8_0_octanoic_acid_g_usda
0.51
sodium_mg_usda
4377.85
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.56
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
699.298472
tnf_beta_pg_ml
0.189996769
total_fat_g_usda
125.76
total_folate_mcg_usda
592.09
total_monounsaturated_fatty_acids_g_usda
48.32
total_polyunsaturated_fatty_acids_g_usda
24.14
total_saturated_fatty_acids_g_usda
43.2
total_sugars_g_usda
87.23
triglycerides
256
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
398.6451079
vegf_pg_ml
41.28752049
vitamin_a_rae_mcg_usda
1179.25
vitamin_b12_mcg_usda
7.01
vitamin_b6_mg_usda
2.24
vitamin_c_mg_usda
186.37
vitamin_e_as_alpha_tocopherol_mg_usda
14.22
vitamin_k_mcg_usda
528.82
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.66