13338.St.chronic.GLD001.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617011
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD001.U
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6
alcohol_g_usda
4.21
alpha_carotene_mcg_usda
130.83
beta_carotene_mcg_usda
1229.69
beta_cryptoxanthin_mcg_usda
214.11
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
2
caffeine_mg_usda
139.81
calcium_mg_usda
1702.22
carbohydrate_g_usda
307.01
cd4_cd38_single_positive_cells
86
cd4_count
741
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
0
cd4_nadir
741
cd4_percent
36
cd8_cd38_single_positive_cells
49
cd8_count
782
cd8_hladr_cd38_percent
34
cd8_hladr_single_positive_cells
3
cd8_percent
38
cholesterol_drugs_1mo
No
cholesterol_mg_usda
182.02
cohort
HIV untreated
collection_timestamp
11/19/14
constipation_24hr_new
NO
copper_mg_usda
1.86
crp_ng_ml
not collected
decreased_stools_new
1
dietary_fiber_g_usda
16.83
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2288.31
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
670.07
folic_acid_mcg_usda
251.58
food_folate_mcg_usda
241.94
gender
male
gi_summary_score
1.142857143
glucose
94
gm_csf_pg_ml
not collected
gramwt_g_usda
3526.89
hard_stools_new
1
hdl
38
heartburn_new
1
hispanic
Yes
host age
24
host body habitat
colon
host body mass index
24.2
host body product
feces
host common name
human
host height
175
host scientific name
Homo sapiens
host subject id
HIV097
host taxid
9606
host weight
74
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
insulin
3
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
21.85
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
79
leptin
3.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
658.36
lycopene_mcg_usda
3789.48
lymphocyte_count
2059
lymphocyte_percent
35.5
magnesium_mg_usda
414.79
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
1.196615294
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.1
mfa_18_1_octadecenoic_acid_g_usda
28.86
mfa_20_1_eicosenoic_acid_g_usda
0.13
mfa_22_1_docosenoic_acid_g_usda
0
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.31
mped_add_sug_usda
25.8
mped_dairy_cheese_usda
0.74
mped_dairy_milk_usda
1.73
mped_dairy_total_usda
2.5
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
16.17
mped_discfat_sol_usda
50.99
mped_fruit_citmlb_usda
1.02
mped_fruit_other_usda
0.76
mped_fruit_total_usda
1.79
mped_grain_nwhl_usda
5.54
mped_grain_total_usda
6.15
mped_grain_whl_usda
0.61
mped_legumes_usda
0.29
mped_m_egg_usda
0.14
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
0.28
mped_m_meat_usda
2.22
mped_m_mpf_usda
3.23
mped_m_nutsd_usda
0.24
mped_m_organ_usda
0.01
mped_m_poult_usda
0.71
mped_m_soy_usda
0.1
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.04
mped_vegetable_other_usda
0.42
mped_vegetable_potato_usda
0.19
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.22
mped_vegetable_total_usda
0.96
nadir_date
11/19/14
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
YES
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
40.12
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
12.98
pfa_18_3_octadecatrienoic_acig_g_usda
1.33
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
1611.04
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3412.18
probiotics_1wk
No
protein_g_usda
85.39
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
1348.88
riboflavin_vitamin_b2_mg_usda
3.5
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.chronic.GLD001.U
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
91.42
sfa_10_0_decanoic_acid_g_usda
0.53
sfa_12_0_dodecanoic_acid_g_usda
0.53
sfa_14_0_tetradecanoic_acid_g_usda
2.53
sfa_16_0_hexadecanoic_acid_g_usda
14.09
sfa_18_0_octadecanoic_acid_g_usda
6.76
sfa_4_0_butanoic_acid_g_usda
0.62
sfa_6_0_hexanoic_acid_g_usda
0.4
sfa_8_0_octanoic_acid_g_usda
0.4
sodium_mg_usda
3039.74
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.36
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
79.46
total_folate_mcg_usda
493.49
total_monounsaturated_fatty_acids_g_usda
30.61
total_polyunsaturated_fatty_acids_g_usda
14.53
total_saturated_fatty_acids_g_usda
26.66
total_sugars_g_usda
156.96
triglycerides
64
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
viral load
2530
vitamin_a_rae_mcg_usda
1465.1
vitamin_b12_mcg_usda
8.19
vitamin_b6_mg_usda
3.93
vitamin_c_mg_usda
207.28
vitamin_e_as_alpha_tocopherol_mg_usda
10.77
vitamin_k_mcg_usda
99.78
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.62