13338.St.chronic.GLD133.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617051
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:15Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD133.T
abdominal_distension_new
3
abdominal_pain_24hr_new
YES
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
4.5
alcohol_g_usda
0
alpha_carotene_mcg_usda
744.97
art_years
19
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2493.04
beta_cryptoxanthin_mcg_usda
98.23
bloating_24hr_new
YES
borborygmus_new
1
bristol_stool_scale_sample
2
caffeine_mg_usda
603.45
calcium_mg_usda
621.07
carbohydrate_g_usda
138.95
cd4_cd38_single_positive_cells
58
cd4_count
1013
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
1
cd4_nadir
38
cd4_percent
22
cd8_cd38_single_positive_cells
38
cd8_count
2441
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
1
cd8_percent
53
cholest_type
Fenofibrate
cholesterol_drugs_1mo
Yes
cholesterol_mg_usda
159.03
cohort
HIV treated LD
collection_timestamp
9/29/16
constipation_24hr_new
YES
copper_mg_usda
1.1
crp_ng_ml
6111.283194
current_art
Epzicom and Raltegravir
current_art_start_date
1/1/08
decreased_stools_new
3
dietary_fiber_g_usda
13.49
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1180.39
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
558.76
folic_acid_mcg_usda
177.36
food_folate_mcg_usda
257.3
gender
male
gi_summary_score
1.857142857
glucose
77
gm_csf_pg_ml
0.340016027
gramwt_g_usda
4115.14
hard_stools_new
3
hdl
18
heartburn_new
3
hispanic
No
host age
61
host body habitat
colon
host body mass index
28
host body product
feces
host common name
human
host height
182
host scientific name
Homo sapiens
host subject id
HIV238
host taxid
9606
host weight
92.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
745.7372882
ifabp_pg_ml
2072.287
il_10_pg_ml
269.9510932
il_12_23p40_pg_ml
469.7631914
il_15_pg_ml
3.18448681
il_16_pg_ml
1099.911869
il_17a_pg_ml
4.518044145
il_22_pg_ml
628.569961
il_6_pg_ml
573.3966074
il_7_pg_ml
8.145006863
incomplete_evacuation_new
3
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
1997
insulin
17
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
12.4
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14496.62162
ldl
64
leptin
17.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1190.89
lycopene_mcg_usda
2406.78
lymphocyte_count
4605.7
lymphocyte_percent
58.3
magnesium_mg_usda
265.37
mcp_1_pg_ml
11795.11707
metab_disease_score_binary
HIGH
metabolic_disease_score
1.636616622
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.86
mfa_18_1_octadecenoic_acid_g_usda
15.83
mfa_20_1_eicosenoic_acid_g_usda
0.16
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
3.8
mped_dairy_cheese_usda
0.17
mped_dairy_milk_usda
0.97
mped_dairy_total_usda
1.19
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
13.39
mped_discfat_sol_usda
21.61
mped_fruit_citmlb_usda
0.25
mped_fruit_other_usda
0.91
mped_fruit_total_usda
1.16
mped_grain_nwhl_usda
2.91
mped_grain_total_usda
3.27
mped_grain_whl_usda
0.35
mped_legumes_usda
0.03
mped_m_egg_usda
0.11
mped_m_fish_hi_usda
0.12
mped_m_fish_lo_usda
0.33
mped_m_frank_usda
1.69
mped_m_meat_usda
1.71
mped_m_mpf_usda
4.55
mped_m_nutsd_usda
0.43
mped_m_organ_usda
0
mped_m_poult_usda
0.69
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.18
mped_vegetable_other_usda
0.44
mped_vegetable_potato_usda
0.2
mped_vegetable_starcy_usda
0.07
mped_vegetable_tomato_usda
0.22
mped_vegetable_total_usda
1.24
nadir_date
10/1/97
nadir_report
Patient report
nadir_years
19
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
17.82
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
9.04
pfa_18_3_octadecatrienoic_acig_g_usda
1.12
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.08
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
909.14
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2963.67
probiotics_1wk
No
protein_g_usda
57.17
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
294.79
riboflavin_vitamin_b2_mg_usda
2.04
saa_ng_ml
748.4595421
sample name
qiita_sid_13338:13338.St.chronic.GLD133.T
sample type
stool
scd14_pg_ml
1780356.671
scd163_ng_ml
1014.592949
selenium_mcg_usda
70.11
sfa_10_0_decanoic_acid_g_usda
0.27
sfa_12_0_dodecanoic_acid_g_usda
0.41
sfa_14_0_tetradecanoic_acid_g_usda
1.28
sfa_16_0_hexadecanoic_acid_g_usda
8.53
sfa_18_0_octadecanoic_acid_g_usda
3.87
sfa_4_0_butanoic_acid_g_usda
0.35
sfa_6_0_hexanoic_acid_g_usda
0.18
sfa_8_0_octanoic_acid_g_usda
0.13
sodium_mg_usda
2268.11
statin_type
Lipitor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.33
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1032.26724
tnf_beta_pg_ml
0.23233058
total_fat_g_usda
47.71
total_folate_mcg_usda
434.67
total_monounsaturated_fatty_acids_g_usda
17.12
total_polyunsaturated_fatty_acids_g_usda
10.43
total_saturated_fatty_acids_g_usda
15.61
total_sugars_g_usda
60.28
triglycerides
197
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
757.3351475
vegf_pg_ml
49.41720486
viral load
0
vitamin_a_rae_mcg_usda
537.88
vitamin_b12_mcg_usda
5.02
vitamin_b6_mg_usda
1.62
vitamin_c_mg_usda
58.71
vitamin_e_as_alpha_tocopherol_mg_usda
4.44
vitamin_k_mcg_usda
77.19
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.14