13338.St.chronic.GLD152.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617056
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD152.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
7.8
alcohol_g_usda
0
alpha_carotene_mcg_usda
27.21
art_years
23
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
274.53
beta_cryptoxanthin_mcg_usda
27.4
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
1432.5
calcium_mg_usda
1336.03
carbohydrate_g_usda
437.45
cd4_cd38_single_positive_cells
72
cd4_count
311
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
1
cd4_nadir
95
cd4_percent
15
cd8_cd38_single_positive_cells
59
cd8_count
1120
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
1
cd8_percent
54
cholesterol_drugs_1mo
No
cholesterol_mg_usda
576.46
cohort
HIV treated LD
collection_timestamp
3/15/17
constipation_24hr_new
NO
copper_mg_usda
1.15
crp_ng_ml
642.0924194
current_art
DRV/RTV/Truvada
decreased_stools_new
1
dietary_fiber_g_usda
16.56
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2794.53
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
946.1
folic_acid_mcg_usda
407.85
food_folate_mcg_usda
252.59
gender
male
gi_summary_score
1.428571429
glucose
92
gm_csf_pg_ml
0.396868906
gramwt_g_usda
5737.09
hard_stools_new
1
hdl
34
heartburn_new
2
hispanic
Yes
host age
55
host body habitat
colon
host body mass index
24.1
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV263
host taxid
9606
host weight
75.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
499.0344467
ifabp_pg_ml
6385.675
il_10_pg_ml
160.0633318
il_12_23p40_pg_ml
280.6903083
il_15_pg_ml
4.928509434
il_16_pg_ml
213.2774478
il_17a_pg_ml
5.173423278
il_22_pg_ml
474.8329602
il_6_pg_ml
260.4598659
il_7_pg_ml
9.931831479
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1994
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
28.02
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6817.966903
ldl
81
leptin
6.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
659.19
lycopene_mcg_usda
1887.8
lymphocyte_count
2073.6
lymphocyte_percent
43.2
magnesium_mg_usda
408.88
mcp_1_pg_ml
9633.261185
metab_disease_score_binary
HIGH
metabolic_disease_score
1.542510749
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.18
mfa_18_1_octadecenoic_acid_g_usda
25.61
mfa_20_1_eicosenoic_acid_g_usda
0.13
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
47.65
mped_dairy_cheese_usda
0.8
mped_dairy_milk_usda
1.96
mped_dairy_total_usda
2.88
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
7.72
mped_discfat_sol_usda
53.28
mped_fruit_citmlb_usda
0.07
mped_fruit_other_usda
0.17
mped_fruit_total_usda
0.24
mped_grain_nwhl_usda
7.76
mped_grain_total_usda
11.12
mped_grain_whl_usda
3.36
mped_legumes_usda
0.12
mped_m_egg_usda
2.04
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
1.4
mped_m_meat_usda
0.4
mped_m_mpf_usda
1.88
mped_m_nutsd_usda
0.22
mped_m_organ_usda
0
mped_m_poult_usda
0.08
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0
mped_vegetable_other_usda
0.14
mped_vegetable_potato_usda
0.01
mped_vegetable_starcy_usda
0
mped_vegetable_tomato_usda
0.11
mped_vegetable_total_usda
0.27
nadir_date
1/1/13
nadir_report
Patient report
nadir_years
4.2
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
28.63
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.34
pfa_18_3_octadecatrienoic_acig_g_usda
1.2
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
1698.69
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3941.14
probiotics_1wk
No
protein_g_usda
83.97
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
961.33
riboflavin_vitamin_b2_mg_usda
5.84
saa_ng_ml
786.9739493
sample name
qiita_sid_13338:13338.St.chronic.GLD152.T
sample type
stool
scd14_pg_ml
1922205.452
scd163_ng_ml
806.9543186
selenium_mcg_usda
128.87
sfa_10_0_decanoic_acid_g_usda
0.8
sfa_12_0_dodecanoic_acid_g_usda
1.21
sfa_14_0_tetradecanoic_acid_g_usda
3.51
sfa_16_0_hexadecanoic_acid_g_usda
16.18
sfa_18_0_octadecanoic_acid_g_usda
6.94
sfa_4_0_butanoic_acid_g_usda
0.96
sfa_6_0_hexanoic_acid_g_usda
0.65
sfa_8_0_octanoic_acid_g_usda
0.58
sodium_mg_usda
3370.11
statin_type
pitivastatin/p
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
2.51
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
575.2416294
tnf_beta_pg_ml
0.291665063
total_fat_g_usda
87.14
total_folate_mcg_usda
661.03
total_monounsaturated_fatty_acids_g_usda
27.57
total_polyunsaturated_fatty_acids_g_usda
11.84
total_saturated_fatty_acids_g_usda
31.53
total_sugars_g_usda
289.31
triglycerides
256
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
419.9859814
vegf_pg_ml
70.83902533
viral load
0
vitamin_a_rae_mcg_usda
986.09
vitamin_b12_mcg_usda
7.61
vitamin_b6_mg_usda
2.36
vitamin_c_mg_usda
27.45
vitamin_e_as_alpha_tocopherol_mg_usda
6.05
vitamin_k_mcg_usda
30.39
watery_diarrhea_24hr_new
NO
zinc_mg_usda
14.9