13338.St.chronic.GLD055.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617033
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD055.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
4.7
alcohol_g_usda
0.89
alpha_carotene_mcg_usda
49.68
art_years
17
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
YES
arv_pi
YES
beta_carotene_mcg_usda
358.34
beta_cryptoxanthin_mcg_usda
38.15
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
81.27
calcium_mg_usda
546.92
carbohydrate_g_usda
170.57
cd4_cd38_single_positive_cells
51
cd4_count
550
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
1
cd4_nadir
4
cd4_percent
17
cd8_cd38_single_positive_cells
5
cd8_count
2007
cd8_hladr_cd38_percent
12
cd8_hladr_single_positive_cells
1
cd8_percent
62
cholesterol_drugs_1mo
No
cholesterol_mg_usda
139.4
cohort
HIV treated LD
collection_timestamp
12/19/15
constipation_24hr_new
NO
copper_mg_usda
0.74
crp_ng_ml
5420.916264
current_art
Epzicom, Intelence, Isentress
current_art_start_date
10/17/08
decreased_stools_new
1
dietary_fiber_g_usda
9.39
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1331.53
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
283.59
folic_acid_mcg_usda
105.58
food_folate_mcg_usda
104.22
gender
male
gi_summary_score
1.071428571
glucose
89
gm_csf_pg_ml
0.494492446
gramwt_g_usda
1933.58
hard_stools_new
1
hdl
37
heartburn_new
1
hispanic
No
host age
48
host body habitat
colon
host body mass index
27
host body product
feces
host common name
human
host height
179
host scientific name
Homo sapiens
host subject id
HIV168
host taxid
9606
host weight
86.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
754.289875
ifabp_pg_ml
2270.83
il_10_pg_ml
217.2336346
il_12_23p40_pg_ml
413.3157284
il_15_pg_ml
4.74256172
il_16_pg_ml
4949.098779
il_17a_pg_ml
5.165882385
il_22_pg_ml
464.37297
il_6_pg_ml
304.3455443
il_7_pg_ml
26.54080093
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
1998
insulin
14
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
8.62
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
13620.30075
ldl
145
leptin
21.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
403.11
lycopene_mcg_usda
3090.48
lymphocyte_count
3237
lymphocyte_percent
49.8
magnesium_mg_usda
163.8
mcp_1_pg_ml
9317.293434
metab_disease_score_binary
HIGH
metabolic_disease_score
1.546671175
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.82
mfa_18_1_octadecenoic_acid_g_usda
19.51
mfa_20_1_eicosenoic_acid_g_usda
0.15
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.06
mped_add_sug_usda
17.91
mped_dairy_cheese_usda
0.36
mped_dairy_milk_usda
0.69
mped_dairy_total_usda
1.06
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
12.73
mped_discfat_sol_usda
31.48
mped_fruit_citmlb_usda
0.11
mped_fruit_other_usda
0.29
mped_fruit_total_usda
0.4
mped_grain_nwhl_usda
3.53
mped_grain_total_usda
4.03
mped_grain_whl_usda
0.49
mped_legumes_usda
0.03
mped_m_egg_usda
0.13
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.06
mped_m_frank_usda
0.68
mped_m_meat_usda
1.16
mped_m_mpf_usda
2.21
mped_m_nutsd_usda
0.76
mped_m_organ_usda
0
mped_m_poult_usda
0.3
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.01
mped_vegetable_drkgr_usda
0
mped_vegetable_other_usda
0.34
mped_vegetable_potato_usda
0.16
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.16
mped_vegetable_total_usda
0.71
nadir_date
1/1/98
nadir_report
Patient report
nadir_years
17.96
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
11.81
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
9.35
pfa_18_3_octadecatrienoic_acig_g_usda
0.88
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.05
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
737.98
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1373.06
probiotics_1wk
No
protein_g_usda
42.53
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
225.23
riboflavin_vitamin_b2_mg_usda
1.21
saa_ng_ml
5354.020631
sample name
qiita_sid_13338:13338.St.chronic.GLD055.T
sample type
stool
scd14_pg_ml
1914787.889
scd163_ng_ml
1061.023354
selenium_mcg_usda
53.68
sfa_10_0_decanoic_acid_g_usda
0.43
sfa_12_0_dodecanoic_acid_g_usda
0.77
sfa_14_0_tetradecanoic_acid_g_usda
1.99
sfa_16_0_hexadecanoic_acid_g_usda
10.24
sfa_18_0_octadecanoic_acid_g_usda
4.63
sfa_4_0_butanoic_acid_g_usda
0.51
sfa_6_0_hexanoic_acid_g_usda
0.31
sfa_8_0_octanoic_acid_g_usda
0.27
sodium_mg_usda
2034.94
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.86
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
749.8416449
tnf_beta_pg_ml
0.518166613
total_fat_g_usda
55.39
total_folate_mcg_usda
209.65
total_monounsaturated_fatty_acids_g_usda
20.71
total_polyunsaturated_fatty_acids_g_usda
10.42
total_saturated_fatty_acids_g_usda
19.78
total_sugars_g_usda
92.35
triglycerides
178
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
869.2332284
vegf_pg_ml
390.3648493
viral load
10
vitamin_a_rae_mcg_usda
258.72
vitamin_b12_mcg_usda
2.75
vitamin_b6_mg_usda
0.95
vitamin_c_mg_usda
35.66
vitamin_e_as_alpha_tocopherol_mg_usda
4.44
vitamin_k_mcg_usda
29.83
watery_diarrhea_24hr_new
NO
zinc_mg_usda
6.98