13338.St.chronic.GLD045.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617031
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD045.T
abdominal_distension_new
2
abdominal_pain_24hr_new
YES
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
4.3
alcohol_g_usda
6.23
alpha_carotene_mcg_usda
3599.27
art_years
20
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
12660.68
beta_cryptoxanthin_mcg_usda
510.18
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
532.27
calcium_mg_usda
3338.4
carbohydrate_g_usda
697.26
cd4_cd38_single_positive_cells
62
cd4_count
908
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_nadir
350
cd4_percent
25
cd8_cd38_single_positive_cells
61
cd8_count
1743
cd8_hladr_cd38_percent
19
cd8_hladr_single_positive_cells
0
cd8_percent
48
cholesterol_drugs_1mo
No
cholesterol_mg_usda
667.51
cohort
HIV treated LD
collection_timestamp
10/16/15
constipation_24hr_new
NO
copper_mg_usda
3.42
crp_ng_ml
4628.430084
current_art
Truvada, Isentress
current_art_start_date
3/1/14
decreased_stools_new
2
dietary_fiber_g_usda
50.48
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
5377.04
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
1730.98
folic_acid_mcg_usda
614.36
food_folate_mcg_usda
686.73
gender
male
gi_summary_score
1.928571429
glucose
103
gm_csf_pg_ml
0.286736201
gramwt_g_usda
8213.45
hard_stools_new
2
hdl
36
heartburn_new
2
hispanic
No
host age
51
host body habitat
colon
host body mass index
26.3
host body product
feces
host common name
human
host height
178
host scientific name
Homo sapiens
host subject id
HIV159
host taxid
9606
host weight
83.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
806.5501681
ifabp_pg_ml
6612.272
il_10_pg_ml
335.4751727
il_12_23p40_pg_ml
245.4016367
il_15_pg_ml
2.927925641
il_16_pg_ml
880.9504617
il_17a_pg_ml
2.089315132
il_22_pg_ml
291.0765194
il_6_pg_ml
517.233714
il_7_pg_ml
20.86028667
incomplete_evacuation_new
3
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
1995
insulin
19
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
40.67
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
11496.2406
ldl
74
leptin
11.6
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
8481.33
lycopene_mcg_usda
16021.26
lymphocyte_count
3631.2
lymphocyte_percent
35.6
magnesium_mg_usda
854.54
mcp_1_pg_ml
5898.519107
metab_disease_score_binary
HIGH
metabolic_disease_score
1.428603689
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
3.02
mfa_18_1_octadecenoic_acid_g_usda
69.96
mfa_20_1_eicosenoic_acid_g_usda
0.45
mfa_22_1_docosenoic_acid_g_usda
0.07
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.45
mped_add_sug_usda
49.88
mped_dairy_cheese_usda
0.82
mped_dairy_milk_usda
6.3
mped_dairy_total_usda
7.16
mped_dairy_yogurt_usda
0.03
mped_discfat_oil_usda
54.64
mped_discfat_sol_usda
117.93
mped_fruit_citmlb_usda
1.64
mped_fruit_other_usda
0.78
mped_fruit_total_usda
2.43
mped_grain_nwhl_usda
13.46
mped_grain_total_usda
15.11
mped_grain_whl_usda
1.46
mped_legumes_usda
0.14
mped_m_egg_usda
0.8
mped_m_fish_hi_usda
0.37
mped_m_fish_lo_usda
0.77
mped_m_frank_usda
0.35
mped_m_meat_usda
3.52
mped_m_mpf_usda
9.16
mped_m_nutsd_usda
0.86
mped_m_organ_usda
0.02
mped_m_poult_usda
4.13
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.78
mped_vegetable_drkgr_usda
0.68
mped_vegetable_other_usda
1.69
mped_vegetable_potato_usda
0.93
mped_vegetable_starcy_usda
0.67
mped_vegetable_tomato_usda
0.83
mped_vegetable_total_usda
5.57
nadir_date
1/1/95
nadir_report
Patient report
nadir_years
20.79
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
56.46
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
35.96
pfa_18_3_octadecatrienoic_acig_g_usda
3.9
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.29
pfa_20_5_eicosapentaenoic_acid_g_usda
0.1
pfa_22_5_docosapentaenoic_acid_g_usda
0.04
pfa_22_6_docosahexaenoic_acid_g_usda
0.17
phosphorus_mg_usda
3946.49
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
8693.89
probiotics_1wk
No
protein_g_usda
205.82
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
1571.84
riboflavin_vitamin_b2_mg_usda
7.24
saa_ng_ml
2507.465419
sample name
qiita_sid_13338:13338.St.chronic.GLD045.T
sample type
stool
scd14_pg_ml
1406580.072
scd163_ng_ml
1304.425036
selenium_mcg_usda
262.9
sfa_10_0_decanoic_acid_g_usda
1.43
sfa_12_0_dodecanoic_acid_g_usda
2.22
sfa_14_0_tetradecanoic_acid_g_usda
6.26
sfa_16_0_hexadecanoic_acid_g_usda
37.91
sfa_18_0_octadecanoic_acid_g_usda
18.87
sfa_4_0_butanoic_acid_g_usda
1.71
sfa_6_0_hexanoic_acid_g_usda
1
sfa_8_0_octanoic_acid_g_usda
0.68
sodium_mg_usda
7658.99
statin_type
lipator
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
4.12
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
681.1790643
tnf_beta_pg_ml
0.214160438
total_fat_g_usda
204.47
total_folate_mcg_usda
1300.67
total_monounsaturated_fatty_acids_g_usda
75.15
total_polyunsaturated_fatty_acids_g_usda
41.42
total_saturated_fatty_acids_g_usda
72.16
total_sugars_g_usda
359.9
triglycerides
67
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
897.8976505
vegf_pg_ml
257.033086
viral load
20
vitamin_a_rae_mcg_usda
2797.85
vitamin_b12_mcg_usda
17.61
vitamin_b6_mg_usda
4.93
vitamin_c_mg_usda
242.07
vitamin_e_as_alpha_tocopherol_mg_usda
21.84
vitamin_k_mcg_usda
404.01
watery_diarrhea_24hr_new
NO
zinc_mg_usda
35.59