13338.St.neg.DM035.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617064
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:17Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM035.1
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
11.4
alcohol_g_usda
0
alpha_carotene_mcg_usda
18.84
beta_carotene_mcg_usda
115.8
beta_cryptoxanthin_mcg_usda
13.18
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
47.6
calcium_mg_usda
183.66
carbohydrate_g_usda
39.53
cd4_cd38_single_positive_cells
67
cd4_count
not collected
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
1
cd4_percent
not collected
cd8_cd38_single_positive_cells
12
cd8_count
not collected
cd8_hladr_cd38_percent
7
cd8_hladr_single_positive_cells
5
cd8_percent
not collected
cholest_type
fenofibrate
cholesterol_drugs_1mo
Yes
cholesterol_mg_usda
46.2
cohort
HIV negative MSM
collection_timestamp
1/11/17
constipation_24hr_new
NO
copper_mg_usda
0.17
crp_ng_ml
1187.420416
decreased_stools_new
1
dietary_fiber_g_usda
2.64
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
336.83
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
134.05
folic_acid_mcg_usda
60.24
food_folate_mcg_usda
31.6
gender
male
gi_summary_score
1
glucose
361
gm_csf_pg_ml
0.277111968
gramwt_g_usda
451.82
hard_stools_new
1
hdl
36
heartburn_new
1
hispanic
No
host age
64
host body habitat
colon
host body mass index
25.6
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV262
host taxid
9606
host weight
79.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
191.7732938
ifabp_pg_ml
2817.238
il_10_pg_ml
352.6812207
il_12_23p40_pg_ml
143.1358294
il_15_pg_ml
4.195030499
il_16_pg_ml
503.8925506
il_17a_pg_ml
8.38159026
il_22_pg_ml
569.7732631
il_6_pg_ml
426.365011
il_7_pg_ml
12.07904893
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
4
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
4.24
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14122.93144
ldl
93
leptin
9.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
72.44
lycopene_mcg_usda
912.22
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
46.71
mcp_1_pg_ml
9768.398579
metab_disease_score_binary
HIGH
metabolic_disease_score
2.501893298
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.26
mfa_18_1_octadecenoic_acid_g_usda
4.28
mfa_20_1_eicosenoic_acid_g_usda
0.05
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
1.93
mped_dairy_cheese_usda
0.08
mped_dairy_milk_usda
0.17
mped_dairy_total_usda
0.31
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
1.44
mped_discfat_sol_usda
8.12
mped_fruit_citmlb_usda
0.05
mped_fruit_other_usda
0.08
mped_fruit_total_usda
0.13
mped_grain_nwhl_usda
0.96
mped_grain_total_usda
1.33
mped_grain_whl_usda
0.38
mped_legumes_usda
0.01
mped_m_egg_usda
0.03
mped_m_fish_hi_usda
0.22
mped_m_fish_lo_usda
0.03
mped_m_frank_usda
0.3
mped_m_meat_usda
0.17
mped_m_mpf_usda
0.87
mped_m_nutsd_usda
0.02
mped_m_organ_usda
0
mped_m_poult_usda
0.15
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0
mped_vegetable_other_usda
0.02
mped_vegetable_potato_usda
0
mped_vegetable_starcy_usda
0
mped_vegetable_tomato_usda
0.05
mped_vegetable_total_usda
0.07
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
5.11
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
1.58
pfa_18_3_octadecatrienoic_acig_g_usda
0.18
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.02
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.05
phosphorus_mg_usda
316.63
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
455.66
probiotics_1wk
not collected
protein_g_usda
17.28
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
144.61
riboflavin_vitamin_b2_mg_usda
0.59
saa_ng_ml
3012.912909
sample name
qiita_sid_13338:13338.St.neg.DM035.1
sample type
stool
scd14_pg_ml
2094974.389
scd163_ng_ml
762.0133737
selenium_mcg_usda
21.84
sfa_10_0_decanoic_acid_g_usda
0.1
sfa_12_0_dodecanoic_acid_g_usda
0.13
sfa_14_0_tetradecanoic_acid_g_usda
0.48
sfa_16_0_hexadecanoic_acid_g_usda
2.47
sfa_18_0_octadecanoic_acid_g_usda
1.14
sfa_4_0_butanoic_acid_g_usda
0.12
sfa_6_0_hexanoic_acid_g_usda
0.07
sfa_8_0_octanoic_acid_g_usda
0.06
sodium_mg_usda
713.29
statin_type
crestor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
0.38
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
712.2160701
tnf_beta_pg_ml
0.168299522
total_fat_g_usda
12.58
total_folate_mcg_usda
91.89
total_monounsaturated_fatty_acids_g_usda
4.67
total_polyunsaturated_fatty_acids_g_usda
1.92
total_saturated_fatty_acids_g_usda
4.7
total_sugars_g_usda
15.99
triglycerides
726
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
226.7499091
vegf_pg_ml
70.06598116
vitamin_a_rae_mcg_usda
155.62
vitamin_b12_mcg_usda
1.64
vitamin_b6_mg_usda
0.47
vitamin_c_mg_usda
8.2
vitamin_e_as_alpha_tocopherol_mg_usda
0.83
vitamin_k_mcg_usda
5.55
watery_diarrhea_24hr_new
NO
zinc_mg_usda
2.17