13338.St.chronic.GLD069.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617035
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD069.T
abdominal_distension_new
4
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
4.5
alcohol_g_usda
24.25
alpha_carotene_mcg_usda
6116.47
art_years
17
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
19292.09
beta_cryptoxanthin_mcg_usda
262.43
bloating_24hr_new
YES
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
279.67
calcium_mg_usda
3612.18
carbohydrate_g_usda
443.21
cd4_cd38_single_positive_cells
70
cd4_count
1149.98
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
1
cd4_nadir
not collected
cd4_percent
48
cd8_cd38_single_positive_cells
28
cd8_count
742.7
cd8_hladr_cd38_percent
4
cd8_hladr_single_positive_cells
3
cd8_percent
31
cholesterol_drugs_1mo
No
cholesterol_mg_usda
1009.98
cohort
HIV treated LD
collection_timestamp
1/29/16
constipation_24hr_new
NO
copper_mg_usda
4.97
crp_ng_ml
658.6393591
current_art
Stribild
current_art_start_date
11/1/14
decreased_stools_new
1
dietary_fiber_g_usda
30.53
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3763.02
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
1376.46
folic_acid_mcg_usda
416.78
food_folate_mcg_usda
666.79
gender
male
gi_summary_score
1.214285714
glucose
109
gm_csf_pg_ml
0.123899236
gramwt_g_usda
14266.71
hard_stools_new
1
hdl
44
heartburn_new
1
hispanic
No
host age
49
host body habitat
colon
host body mass index
28.9
host body product
feces
host common name
human
host height
188
host scientific name
Homo sapiens
host subject id
HIV177
host taxid
9606
host weight
102
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
385.7275948
ifabp_pg_ml
4306.338
il_10_pg_ml
517.9020988
il_12_23p40_pg_ml
105.1125887
il_15_pg_ml
2.865380757
il_16_pg_ml
511.9979086
il_17a_pg_ml
23.9340753
il_22_pg_ml
1032.310677
il_6_pg_ml
277.9401519
il_7_pg_ml
7.460944378
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
1999
insulin
4
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
42.9
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
7558.270677
ldl
102
leptin
3.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
10533.07
lycopene_mcg_usda
3288.64
lymphocyte_count
2395.8
lymphocyte_percent
36.3
magnesium_mg_usda
1072.98
mcp_1_pg_ml
10103.08863
metab_disease_score_binary
LOW
metabolic_disease_score
1.275845003
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.63
mfa_18_1_octadecenoic_acid_g_usda
52.36
mfa_20_1_eicosenoic_acid_g_usda
0.51
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
1.68
mped_add_sug_usda
40.19
mped_dairy_cheese_usda
0.34
mped_dairy_milk_usda
2.78
mped_dairy_total_usda
3.89
mped_dairy_yogurt_usda
0.73
mped_discfat_oil_usda
59.3
mped_discfat_sol_usda
54.99
mped_fruit_citmlb_usda
0.62
mped_fruit_other_usda
1.97
mped_fruit_total_usda
2.6
mped_grain_nwhl_usda
4.46
mped_grain_total_usda
5.22
mped_grain_whl_usda
0.76
mped_legumes_usda
0.11
mped_m_egg_usda
4.1
mped_m_fish_hi_usda
0.57
mped_m_fish_lo_usda
1.54
mped_m_frank_usda
0.32
mped_m_meat_usda
0.48
mped_m_mpf_usda
3.22
mped_m_nutsd_usda
4.17
mped_m_organ_usda
0.01
mped_m_poult_usda
0.3
mped_m_soy_usda
0.37
mped_vegetable_dpyel_usda
0.92
mped_vegetable_drkgr_usda
0.93
mped_vegetable_other_usda
1.04
mped_vegetable_potato_usda
0.11
mped_vegetable_starcy_usda
0.13
mped_vegetable_tomato_usda
0.15
mped_vegetable_total_usda
3.28
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
65.48
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
31.31
pfa_18_3_octadecatrienoic_acig_g_usda
2.79
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.35
pfa_20_5_eicosapentaenoic_acid_g_usda
0.08
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.23
phosphorus_mg_usda
3075.73
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
6810.68
probiotics_1wk
No
protein_g_usda
155.15
race
Black/African American
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
3394.89
riboflavin_vitamin_b2_mg_usda
7.08
saa_ng_ml
3574.562894
sample name
qiita_sid_13338:13338.St.chronic.GLD069.T
sample type
stool
scd14_pg_ml
1584266.423
scd163_ng_ml
448.7820066
selenium_mcg_usda
228.02
sfa_10_0_decanoic_acid_g_usda
0.85
sfa_12_0_dodecanoic_acid_g_usda
1.24
sfa_14_0_tetradecanoic_acid_g_usda
2.92
sfa_16_0_hexadecanoic_acid_g_usda
21.9
sfa_18_0_octadecanoic_acid_g_usda
8.36
sfa_4_0_butanoic_acid_g_usda
0.77
sfa_6_0_hexanoic_acid_g_usda
0.53
sfa_8_0_octanoic_acid_g_usda
0.7
sodium_mg_usda
5168.87
statins_1mo
No
thiamin_vitamin_b1_mg_usda
4.6
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
699.3964621
tnf_beta_pg_ml
0.32504793
total_fat_g_usda
142.61
total_folate_mcg_usda
1085.23
total_monounsaturated_fatty_acids_g_usda
54.78
total_polyunsaturated_fatty_acids_g_usda
34.83
total_saturated_fatty_acids_g_usda
38.86
total_sugars_g_usda
267.13
triglycerides
74
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
538.8546788
vegf_pg_ml
123.8873645
viral load
20
vitamin_a_rae_mcg_usda
5267.9
vitamin_b12_mcg_usda
14.64
vitamin_b6_mg_usda
6.61
vitamin_c_mg_usda
264.32
vitamin_e_as_alpha_tocopherol_mg_usda
30.97
vitamin_k_mcg_usda
633.37
watery_diarrhea_24hr_new
NO
zinc_mg_usda
30.62