13338.St.chronic.GLD030.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617025
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD030.T
abdominal_distension_new
2
abdominal_pain_24hr_new
YES
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
2
adiponectin
1.7
alcohol_g_usda
19.31
alpha_carotene_mcg_usda
988.07
art_years
6
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
6151.27
beta_cryptoxanthin_mcg_usda
96.53
bloating_24hr_new
YES
borborygmus_new
1
bristol_stool_scale_sample
5.5
caffeine_mg_usda
235.73
calcium_mg_usda
1213.38
carbohydrate_g_usda
202.24
cd4_cd38_single_positive_cells
57
cd4_count
998
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
2
cd4_nadir
478
cd4_percent
44
cd8_cd38_single_positive_cells
10
cd8_count
885
cd8_hladr_cd38_percent
11
cd8_hladr_single_positive_cells
8
cd8_percent
39
cholesterol_drugs_1mo
No
cholesterol_mg_usda
158.98
cohort
HIV treated
collection_timestamp
5/5/15
constipation_24hr_new
NO
copper_mg_usda
1.9
crp_ng_ml
1296.617867
current_art
tivicay & truvada
current_art_start_date
10/10/14
decreased_stools_new
1
dietary_fiber_g_usda
19.14
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1794.64
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
612.13
folic_acid_mcg_usda
150.97
food_folate_mcg_usda
355.23
gender
male
gi_summary_score
1.785714286
glucose
93
gm_csf_pg_ml
0.238066813
gramwt_g_usda
3597.36
hard_stools_new
1
hdl
43
heartburn_new
3
hispanic
Yes
host age
37
host body habitat
colon
host body mass index
25.8
host body product
feces
host common name
human
host height
167
host scientific name
Homo sapiens
host subject id
HIV074
host taxid
9606
host weight
71.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
442.1423065
ifabp_pg_ml
7396.116
il_10_pg_ml
238.1686958
il_12_23p40_pg_ml
270.8120093
il_15_pg_ml
3.19939524
il_16_pg_ml
415.6169933
il_17a_pg_ml
1.869405669
il_22_pg_ml
206.6278427
il_6_pg_ml
303.4772969
il_7_pg_ml
16.73509038
incomplete_evacuation_new
2
increased_flatus_new
1
increased_stools_new
2
initial_art_start_date
2009
insulin
5
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
17.93
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
12934.21053
ldl
128
leptin
10.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
7560.18
lycopene_mcg_usda
2335.63
lymphocyte_count
2269
lymphocyte_percent
34.9
magnesium_mg_usda
451.68
mcp_1_pg_ml
10643.73611
metab_disease_score_binary
LOW
metabolic_disease_score
1.313082065
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.85
mfa_18_1_octadecenoic_acid_g_usda
26.61
mfa_20_1_eicosenoic_acid_g_usda
0.26
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
1.34
mped_add_sug_usda
18.68
mped_dairy_cheese_usda
0.52
mped_dairy_milk_usda
1.88
mped_dairy_total_usda
2.57
mped_dairy_yogurt_usda
0.16
mped_discfat_oil_usda
25.8
mped_discfat_sol_usda
27.29
mped_fruit_citmlb_usda
0.15
mped_fruit_other_usda
0.33
mped_fruit_total_usda
0.49
mped_grain_nwhl_usda
1.1
mped_grain_total_usda
1.57
mped_grain_whl_usda
0.47
mped_legumes_usda
0.11
mped_m_egg_usda
0.3
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0
mped_m_frank_usda
0.18
mped_m_meat_usda
0.97
mped_m_mpf_usda
1.4
mped_m_nutsd_usda
3.18
mped_m_organ_usda
0
mped_m_poult_usda
0.25
mped_m_soy_usda
0.06
mped_vegetable_dpyel_usda
0.2
mped_vegetable_drkgr_usda
0.57
mped_vegetable_other_usda
0.54
mped_vegetable_potato_usda
0.23
mped_vegetable_starcy_usda
0.59
mped_vegetable_tomato_usda
0.14
mped_vegetable_total_usda
2.25
nadir_date
7/2/09
nadir_report
Medical records report
nadir_years
5.84
nausea_vomiting_24hr_new
YES
nausea_vomiting_new
2
new_sti_12mo_new
not collected
niacin_mg_usda
26.98
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
13.98
pfa_18_3_octadecatrienoic_acig_g_usda
1.23
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.06
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
1468.05
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3219.56
probiotics_1wk
No
protein_g_usda
68.4
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
849.99
riboflavin_vitamin_b2_mg_usda
2.94
saa_ng_ml
1145.618707
sample name
qiita_sid_13338:13338.St.chronic.GLD030.T
sample type
stool
scd14_pg_ml
925708.616
scd163_ng_ml
1298.900565
selenium_mcg_usda
74.95
sfa_10_0_decanoic_acid_g_usda
0.44
sfa_12_0_dodecanoic_acid_g_usda
0.63
sfa_14_0_tetradecanoic_acid_g_usda
1.86
sfa_16_0_hexadecanoic_acid_g_usda
10.88
sfa_18_0_octadecanoic_acid_g_usda
4.69
sfa_4_0_butanoic_acid_g_usda
0.59
sfa_6_0_hexanoic_acid_g_usda
0.3
sfa_8_0_octanoic_acid_g_usda
0.24
sodium_mg_usda
2499.66
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.73
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
926.0573323
tnf_beta_pg_ml
0.269715291
total_fat_g_usda
70.11
total_folate_mcg_usda
506.81
total_monounsaturated_fatty_acids_g_usda
28.1
total_polyunsaturated_fatty_acids_g_usda
15.4
total_saturated_fatty_acids_g_usda
20.51
total_sugars_g_usda
116.69
triglycerides
97
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
3
vcam_1_ng_ml
986.1538755
vegf_pg_ml
126.835442
viral load
20
vitamin_a_rae_mcg_usda
1407.71
vitamin_b12_mcg_usda
6.31
vitamin_b6_mg_usda
2.72
vitamin_c_mg_usda
87.71
vitamin_e_as_alpha_tocopherol_mg_usda
13.47
vitamin_k_mcg_usda
360.29
watery_diarrhea_24hr_new
NO
zinc_mg_usda
14.43