13338.St.chronic.GLD022.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617019
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD022.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
7.7
alcohol_g_usda
0.28
alpha_carotene_mcg_usda
438.34
art_years
23
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
1831.82
beta_cryptoxanthin_mcg_usda
411.43
bloating_24hr_new
NO
borborygmus_new
3
bristol_stool_scale_sample
6
caffeine_mg_usda
512.28
calcium_mg_usda
3604.39
carbohydrate_g_usda
594.38
cd4_cd38_single_positive_cells
73
cd4_count
545
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
2
cd4_nadir
59
cd4_percent
19
cd8_cd38_single_positive_cells
36
cd8_count
1399
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
14
cd8_percent
49
cholesterol_drugs_1mo
No
cholesterol_mg_usda
364.06
cohort
HIV treated LD
collection_timestamp
3/4/15
constipation_24hr_new
NO
copper_mg_usda
3.16
crp_ng_ml
568.5232188
current_art
viramune, truvada
current_art_start_date
1/1/07
decreased_stools_new
1
dietary_fiber_g_usda
57.45
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
4095.28
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
3
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1567.33
folic_acid_mcg_usda
600.79
food_folate_mcg_usda
545.51
gender
male
gi_summary_score
1.928571429
glucose
77
gm_csf_pg_ml
0.210389695
gramwt_g_usda
8541.11
hard_stools_new
1
hdl
47
heartburn_new
1
hispanic
Yes
host age
55
host body habitat
colon
host body mass index
27.4
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV153
host taxid
9606
host weight
82
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
484.6759707
ifabp_pg_ml
2181.078
il_10_pg_ml
244.0466896
il_12_23p40_pg_ml
219.2309706
il_15_pg_ml
3.026717827
il_16_pg_ml
392.0258684
il_17a_pg_ml
3.484040199
il_22_pg_ml
447.735149
il_6_pg_ml
594.1524091
il_7_pg_ml
10.40180786
incomplete_evacuation_new
1
increased_flatus_new
3
increased_stools_new
3
initial_art_start_date
1992
insulin
11
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
43.86
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
7900.337838
ldl
80
leptin
9.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
2198.95
lycopene_mcg_usda
978.42
lymphocyte_count
2855
lymphocyte_percent
30.7
magnesium_mg_usda
1028.89
mcp_1_pg_ml
9311.58347
metab_disease_score_binary
LOW
metabolic_disease_score
1.270781007
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.8
mfa_18_1_octadecenoic_acid_g_usda
36.17
mfa_20_1_eicosenoic_acid_g_usda
0.27
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.02
mped_add_sug_usda
13.83
mped_dairy_cheese_usda
0.11
mped_dairy_milk_usda
7.99
mped_dairy_total_usda
8.17
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
16.91
mped_discfat_sol_usda
53.41
mped_fruit_citmlb_usda
1.3
mped_fruit_other_usda
2.38
mped_fruit_total_usda
3.68
mped_grain_nwhl_usda
10.45
mped_grain_total_usda
21.6
mped_grain_whl_usda
11.13
mped_legumes_usda
0.02
mped_m_egg_usda
0.02
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.05
mped_m_frank_usda
0.03
mped_m_meat_usda
0.53
mped_m_mpf_usda
7.55
mped_m_nutsd_usda
2.79
mped_m_organ_usda
0
mped_m_poult_usda
6.94
mped_m_soy_usda
0.09
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
0.22
mped_vegetable_other_usda
0.28
mped_vegetable_potato_usda
0.09
mped_vegetable_starcy_usda
0.18
mped_vegetable_tomato_usda
0.05
mped_vegetable_total_usda
0.89
nadir_date
1/1/01
nadir_report
Patient report
nadir_years
14.17
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
3
new_sti_12mo_new
No
niacin_mg_usda
57.32
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
19.29
pfa_18_3_octadecatrienoic_acig_g_usda
1.73
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.27
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.05
pfa_22_6_docosahexaenoic_acid_g_usda
0.1
phosphorus_mg_usda
4048.27
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
7764.16
probiotics_1wk
No
protein_g_usda
202.29
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
2182.03
riboflavin_vitamin_b2_mg_usda
8.13
saa_ng_ml
2106.02774
sample name
qiita_sid_13338:13338.St.chronic.GLD022.T
sample type
stool
scd14_pg_ml
1129197.362
scd163_ng_ml
1062.136517
selenium_mcg_usda
294.51
sfa_10_0_decanoic_acid_g_usda
1.25
sfa_12_0_dodecanoic_acid_g_usda
1.53
sfa_14_0_tetradecanoic_acid_g_usda
4.28
sfa_16_0_hexadecanoic_acid_g_usda
21.31
sfa_18_0_octadecanoic_acid_g_usda
8.83
sfa_4_0_butanoic_acid_g_usda
1.3
sfa_6_0_hexanoic_acid_g_usda
0.91
sfa_8_0_octanoic_acid_g_usda
0.59
sodium_mg_usda
4956.86
statin_type
atorvastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
4.52
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
733.8741358
tnf_beta_pg_ml
0.126293636
total_fat_g_usda
114.66
total_folate_mcg_usda
1147.4
total_monounsaturated_fatty_acids_g_usda
38.76
total_polyunsaturated_fatty_acids_g_usda
21.62
total_saturated_fatty_acids_g_usda
41.17
total_sugars_g_usda
247.19
triglycerides
153
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
546.4232914
vegf_pg_ml
84.80405524
viral load
20
vitamin_a_rae_mcg_usda
2366.93
vitamin_b12_mcg_usda
13.77
vitamin_b6_mg_usda
5.93
vitamin_c_mg_usda
183.94
vitamin_e_as_alpha_tocopherol_mg_usda
10.83
vitamin_k_mcg_usda
102.43
watery_diarrhea_24hr_new
NO
zinc_mg_usda
31.27