13338.St.chronic.GLD031.U.b
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617026
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD031.U.b
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
2.9
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
369.34
beta_carotene_mcg_usda
2672.81
beta_cryptoxanthin_mcg_usda
2055.41
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
372.15
calcium_mg_usda
7279.41
carbohydrate_g_usda
952.03
cd4_cd38_single_positive_cells
12
cd4_count
447
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
0
cd4_nadir
493
cd4_percent
13
cd8_cd38_single_positive_cells
29
cd8_count
2749
cd8_hladr_cd38_percent
52
cd8_hladr_single_positive_cells
0
cd8_percent
80
cholesterol_drugs_1mo
No
cholesterol_mg_usda
322.35
cohort
HIV untreated
collection_timestamp
5/26/15
constipation_24hr_new
NO
copper_mg_usda
4.45
crp_ng_ml
16792.22829
decreased_stools_new
1
dietary_fiber_g_usda
45.74
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
5709.9
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1282.07
folic_acid_mcg_usda
301.46
food_folate_mcg_usda
769.4
gender
male
gi_summary_score
1.642857143
glucose
302
gm_csf_pg_ml
0.552366253
gramwt_g_usda
10518.88
hard_stools_new
2
hdl
31
heartburn_new
2
hispanic
No
host age
50
host body habitat
colon
host body mass index
30.2
host body product
feces
host common name
human
host height
171
host scientific name
Homo sapiens
host subject id
HIV087
host taxid
9606
host weight
88.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
589.8192795
ifabp_pg_ml
1864.567
il_10_pg_ml
431.2000406
il_12_23p40_pg_ml
609.2018828
il_15_pg_ml
3.880758308
il_16_pg_ml
664.8908402
il_17a_pg_ml
7.481134235
il_22_pg_ml
425.4794464
il_6_pg_ml
305.656515
il_7_pg_ml
14.26517234
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
9
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
34.79
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
22663.85135
ldl
92
leptin
7.2
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
3654.3
lycopene_mcg_usda
4745.91
lymphocyte_count
3436
lymphocyte_percent
49.8
magnesium_mg_usda
1131.92
mcp_1_pg_ml
4296.903711
metab_disease_score_binary
HIGH
metabolic_disease_score
2.169638409
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.57
mfa_18_1_octadecenoic_acid_g_usda
49.6
mfa_20_1_eicosenoic_acid_g_usda
0.49
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
51.51
mped_dairy_cheese_usda
0.2
mped_dairy_milk_usda
12.27
mped_dairy_total_usda
12.55
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
53.36
mped_discfat_sol_usda
61.45
mped_fruit_citmlb_usda
6.72
mped_fruit_other_usda
7.49
mped_fruit_total_usda
14.2
mped_grain_nwhl_usda
8.25
mped_grain_total_usda
10.09
mped_grain_whl_usda
1.84
mped_legumes_usda
0.06
mped_m_egg_usda
0.33
mped_m_fish_hi_usda
0.44
mped_m_fish_lo_usda
0.12
mped_m_frank_usda
0.54
mped_m_meat_usda
1.11
mped_m_mpf_usda
2.41
mped_m_nutsd_usda
4.58
mped_m_organ_usda
0.01
mped_m_poult_usda
0.2
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.04
mped_vegetable_drkgr_usda
0.13
mped_vegetable_other_usda
0.34
mped_vegetable_potato_usda
0.67
mped_vegetable_starcy_usda
0.1
mped_vegetable_tomato_usda
0.12
mped_vegetable_total_usda
1.4
nadir_date
10/2/14
nadir_report
Medical records report
nadir_years
0.65
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
38.16
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
30.85
pfa_18_3_octadecatrienoic_acig_g_usda
2.09
pfa_18_4_octadecatetraenoic_acid_g_usda
0.04
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.11
phosphorus_mg_usda
4598.88
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
12724.6
probiotics_1wk
No
protein_g_usda
181.04
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1956.42
riboflavin_vitamin_b2_mg_usda
8.58
saa_ng_ml
5554.707633
sample name
qiita_sid_13338:13338.St.chronic.GLD031.U.b
sample type
stool
scd14_pg_ml
1539103.822
scd163_ng_ml
1184.627237
selenium_mcg_usda
201.32
sfa_10_0_decanoic_acid_g_usda
1.2
sfa_12_0_dodecanoic_acid_g_usda
1.55
sfa_14_0_tetradecanoic_acid_g_usda
4.52
sfa_16_0_hexadecanoic_acid_g_usda
26.39
sfa_18_0_octadecanoic_acid_g_usda
11.35
sfa_4_0_butanoic_acid_g_usda
1.33
sfa_6_0_hexanoic_acid_g_usda
0.84
sfa_8_0_octanoic_acid_g_usda
0.52
sodium_mg_usda
5649.29
statin_type
atorvastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
3.96
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1108.597369
tnf_beta_pg_ml
0.45853723
total_fat_g_usda
146.51
total_folate_mcg_usda
1070.74
total_monounsaturated_fatty_acids_g_usda
52.39
total_polyunsaturated_fatty_acids_g_usda
33.74
total_saturated_fatty_acids_g_usda
49.44
total_sugars_g_usda
679.54
triglycerides
271
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
1053.263079
vegf_pg_ml
113.6673764
viral load
414000
vitamin_a_rae_mcg_usda
2278.2
vitamin_b12_mcg_usda
17.21
vitamin_b6_mg_usda
5.69
vitamin_c_mg_usda
1081.07
vitamin_e_as_alpha_tocopherol_mg_usda
20.54
vitamin_k_mcg_usda
108.4
watery_diarrhea_24hr_new
NO
zinc_mg_usda
31.94