13338.St.chronic.GLD040.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617029
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD040.T
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
No
acid_regurgitation_new
not collected
adiponectin
14.4
alcohol_g_usda
0
alpha_carotene_mcg_usda
6.4
art_years
5
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
121.09
beta_cryptoxanthin_mcg_usda
7.66
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
58.13
calcium_mg_usda
183.08
carbohydrate_g_usda
119.13
cd4_cd38_single_positive_cells
63
cd4_count
431
cd4_hladr_cd38_percent
12
cd4_hladr_single_positive_cells
3
cd4_nadir
140
cd4_percent
12
cd8_cd38_single_positive_cells
81
cd8_count
2084
cd8_hladr_cd38_percent
14
cd8_hladr_single_positive_cells
0
cd8_percent
58
cholesterol_drugs_1mo
No
cholesterol_mg_usda
30.56
cohort
HIV treated
collection_timestamp
10/7/15
constipation_24hr_new
NO
copper_mg_usda
0.36
crp_ng_ml
1826.347191
current_art
Triumeq
current_art_start_date
1/1/15
decreased_stools_new
not collected
dietary_fiber_g_usda
2.27
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
595.67
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
105.58
folic_acid_mcg_usda
50.29
food_folate_mcg_usda
20.1
gender
male
gi_summary_score
not collected
glucose
98
gm_csf_pg_ml
0.20618854
gramwt_g_usda
2858.43
hard_stools_new
not collected
hdl
29
heartburn_new
not collected
hispanic
No
host age
45
host body habitat
colon
host body mass index
23.9
host body product
feces
host common name
human
host height
153
host scientific name
Homo sapiens
host subject id
HIV157
host taxid
9606
host weight
56
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
665.7618784
ifabp_pg_ml
2569.51
il_10_pg_ml
280.0856357
il_12_23p40_pg_ml
209.825388
il_15_pg_ml
2.391028707
il_16_pg_ml
409.4726354
il_17a_pg_ml
1.18493507
il_22_pg_ml
108.8977729
il_6_pg_ml
602.7805787
il_7_pg_ml
11.48994636
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
initial_art_start_date
2010
insulin
10
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
3.15
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
11101.50376
ldl
86
leptin
1.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
180.53
lycopene_mcg_usda
502.75
lymphocyte_count
3593.1
lymphocyte_percent
41.3
magnesium_mg_usda
54.32
mcp_1_pg_ml
10526.12519
metab_disease_score_binary
LOW
metabolic_disease_score
1.297810191
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.16
mfa_18_1_octadecenoic_acid_g_usda
3.88
mfa_20_1_eicosenoic_acid_g_usda
0.03
mfa_22_1_docosenoic_acid_g_usda
0
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0
mped_add_sug_usda
23.88
mped_dairy_cheese_usda
0.03
mped_dairy_milk_usda
0.2
mped_dairy_total_usda
0.24
mped_dairy_yogurt_usda
0.01
mped_discfat_oil_usda
2.09
mped_discfat_sol_usda
6.44
mped_fruit_citmlb_usda
0.01
mped_fruit_other_usda
0.07
mped_fruit_total_usda
0.07
mped_grain_nwhl_usda
0.65
mped_grain_total_usda
0.77
mped_grain_whl_usda
0.11
mped_legumes_usda
0.01
mped_m_egg_usda
0.03
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.05
mped_m_frank_usda
0.06
mped_m_meat_usda
0.32
mped_m_mpf_usda
0.53
mped_m_nutsd_usda
0.12
mped_m_organ_usda
0
mped_m_poult_usda
0.1
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0.01
mped_vegetable_other_usda
0.05
mped_vegetable_potato_usda
0.04
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.03
mped_vegetable_total_usda
0.14
nadir_date
1/1/14
nadir_report
Patient report
nadir_years
1.76
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
not collected
niacin_mg_usda
3.43
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
1.75
pfa_18_3_octadecatrienoic_acig_g_usda
0.17
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.01
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
218.75
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
324.91
probiotics_1wk
not collected
protein_g_usda
10.09
race
Black/African American
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
94.95
riboflavin_vitamin_b2_mg_usda
0.32
saa_ng_ml
993.823495
sample name
qiita_sid_13338:13338.St.chronic.GLD040.T
sample type
stool
scd14_pg_ml
1563142.871
scd163_ng_ml
554.7218575
selenium_mcg_usda
12.01
sfa_10_0_decanoic_acid_g_usda
0.07
sfa_12_0_dodecanoic_acid_g_usda
0.09
sfa_14_0_tetradecanoic_acid_g_usda
0.33
sfa_16_0_hexadecanoic_acid_g_usda
1.96
sfa_18_0_octadecanoic_acid_g_usda
0.92
sfa_4_0_butanoic_acid_g_usda
0.09
sfa_6_0_hexanoic_acid_g_usda
0.05
sfa_8_0_octanoic_acid_g_usda
0.03
sodium_mg_usda
501.31
statin_type
pitavastatin/placebo
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
0.24
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
777.6718935
tnf_beta_pg_ml
0.149446138
total_fat_g_usda
10.64
total_folate_mcg_usda
70.37
total_monounsaturated_fatty_acids_g_usda
4.13
total_polyunsaturated_fatty_acids_g_usda
1.96
total_saturated_fatty_acids_g_usda
3.69
total_sugars_g_usda
88.72
triglycerides
57
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
not collected
vcam_1_ng_ml
625.0123427
vegf_pg_ml
146.7880713
viral load
20
vitamin_a_rae_mcg_usda
105.77
vitamin_b12_mcg_usda
1.06
vitamin_b6_mg_usda
0.32
vitamin_c_mg_usda
5.2
vitamin_e_as_alpha_tocopherol_mg_usda
0.88
vitamin_k_mcg_usda
10.41
watery_diarrhea_24hr_new
NO
zinc_mg_usda
2.44