13338.St.chronic.GLD146.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617055
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD146.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
9.4
alcohol_g_usda
0
alpha_carotene_mcg_usda
1870.07
art_years
23
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
4827.06
beta_cryptoxanthin_mcg_usda
906.77
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
510.53
calcium_mg_usda
1240.5
carbohydrate_g_usda
270.52
cd4_cd38_single_positive_cells
60
cd4_count
678
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
2
cd4_nadir
175
cd4_percent
32
cd8_cd38_single_positive_cells
13
cd8_count
720
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
1
cd8_percent
34
cholesterol_drugs_1mo
No
cholesterol_mg_usda
260.19
cohort
HIV treated LD
collection_timestamp
2/23/17
constipation_24hr_new
NO
copper_mg_usda
2.05
crp_ng_ml
1543.475167
current_art
Descovy & Nevirapine
current_art_start_date
8/1/16
decreased_stools_new
2
dietary_fiber_g_usda
27.61
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1961.14
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
691.72
folic_acid_mcg_usda
148.85
food_folate_mcg_usda
438.61
gender
male
gi_summary_score
1.285714286
glucose
85
gm_csf_pg_ml
0.174458319
gramwt_g_usda
4544.22
hard_stools_new
2
hdl
63
heartburn_new
1
hispanic
No
host age
65
host body habitat
colon
host body mass index
25.8
host body product
feces
host common name
human
host height
184
host scientific name
Homo sapiens
host subject id
HIV264
host taxid
9606
host weight
87.3
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
441.2460145
ifabp_pg_ml
3994.985
il_10_pg_ml
163.3530441
il_12_23p40_pg_ml
188.1375706
il_15_pg_ml
5.205381161
il_16_pg_ml
347.4571024
il_17a_pg_ml
5.85362767
il_22_pg_ml
383.810184
il_6_pg_ml
298.7837279
il_7_pg_ml
8.298703509
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1994
insulin
6
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
16.78
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
7196.217494
ldl
101
leptin
15.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
2063.93
lycopene_mcg_usda
3652.34
lymphocyte_count
2118.4
lymphocyte_percent
33.1
magnesium_mg_usda
506.69
mcp_1_pg_ml
6853.475289
metab_disease_score_binary
LOW
metabolic_disease_score
0.878507034
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.8
mfa_18_1_octadecenoic_acid_g_usda
29.49
mfa_20_1_eicosenoic_acid_g_usda
0.42
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
3.32
mped_dairy_cheese_usda
1.25
mped_dairy_milk_usda
0.59
mped_dairy_total_usda
2.18
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
30.1
mped_discfat_sol_usda
18.16
mped_fruit_citmlb_usda
2.9
mped_fruit_other_usda
3.82
mped_fruit_total_usda
6.72
mped_grain_nwhl_usda
1.77
mped_grain_total_usda
2.63
mped_grain_whl_usda
0.86
mped_legumes_usda
0
mped_m_egg_usda
0.95
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0
mped_m_frank_usda
1.1
mped_m_meat_usda
0.31
mped_m_mpf_usda
1.42
mped_m_nutsd_usda
5.6
mped_m_organ_usda
0
mped_m_poult_usda
0
mped_m_soy_usda
0.04
mped_vegetable_dpyel_usda
0.37
mped_vegetable_drkgr_usda
0.03
mped_vegetable_other_usda
1.23
mped_vegetable_potato_usda
0.01
mped_vegetable_starcy_usda
0.11
mped_vegetable_tomato_usda
0.25
mped_vegetable_total_usda
2
nadir_date
1/1/94
nadir_report
Patient report
nadir_years
23.15
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
24.03
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
16.98
pfa_18_3_octadecatrienoic_acig_g_usda
0.88
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.1
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1554.1
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4989.07
probiotics_1wk
No
protein_g_usda
74.21
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
368.11
riboflavin_vitamin_b2_mg_usda
2.99
saa_ng_ml
1650.146896
sample name
qiita_sid_13338:13338.St.chronic.GLD146.T
sample type
stool
scd14_pg_ml
1924621.801
scd163_ng_ml
1044.216072
selenium_mcg_usda
94.87
sfa_10_0_decanoic_acid_g_usda
0.26
sfa_12_0_dodecanoic_acid_g_usda
0.33
sfa_14_0_tetradecanoic_acid_g_usda
1.34
sfa_16_0_hexadecanoic_acid_g_usda
10.76
sfa_18_0_octadecanoic_acid_g_usda
3.87
sfa_4_0_butanoic_acid_g_usda
0.4
sfa_6_0_hexanoic_acid_g_usda
0.13
sfa_8_0_octanoic_acid_g_usda
0.13
sodium_mg_usda
2293.8
statin_type
pitivastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.8
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
589.6558797
tnf_beta_pg_ml
0.198735364
total_fat_g_usda
76.18
total_folate_mcg_usda
587.55
total_monounsaturated_fatty_acids_g_usda
30.99
total_polyunsaturated_fatty_acids_g_usda
17.98
total_saturated_fatty_acids_g_usda
18.55
total_sugars_g_usda
164.99
triglycerides
74
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
527.8281948
vegf_pg_ml
57.12404012
viral load
0
vitamin_a_rae_mcg_usda
887.69
vitamin_b12_mcg_usda
3.94
vitamin_b6_mg_usda
2.88
vitamin_c_mg_usda
333.35
vitamin_e_as_alpha_tocopherol_mg_usda
12.78
vitamin_k_mcg_usda
72.56
watery_diarrhea_24hr_new
NO
zinc_mg_usda
12.31