13338.St.neg.GLD012
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617078
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD012
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
10.5
alcohol_g_usda
5.69
alpha_carotene_mcg_usda
2082.88
beta_carotene_mcg_usda
11555.2
beta_cryptoxanthin_mcg_usda
73.54
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
4
caffeine_mg_usda
175.65
calcium_mg_usda
1268.97
carbohydrate_g_usda
173.8
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
980.38
cohort
HIV negative MSM
collection_timestamp
1/27/15
constipation_24hr_new
NO
copper_mg_usda
2.19
crp_ng_ml
not collected
decreased_stools_new
2
dietary_fiber_g_usda
12.48
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2917.28
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
473.91
folic_acid_mcg_usda
32.73
food_folate_mcg_usda
416.84
gender
male
gi_summary_score
1.571428571
glucose
77
gm_csf_pg_ml
not collected
gramwt_g_usda
9159.55
hard_stools_new
3
hdl
45
heartburn_new
2
hispanic
No
host age
30
host body habitat
colon
host body mass index
22.6
host body product
feces
host common name
human
host height
189
host scientific name
Homo sapiens
host subject id
HIV147
host taxid
9606
host weight
80.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
17.53
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
140
leptin
3.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
11485.78
lycopene_mcg_usda
6659.57
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
418.55
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
1.031619345
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
4.42
mfa_18_1_octadecenoic_acid_g_usda
62.43
mfa_20_1_eicosenoic_acid_g_usda
0.62
mfa_22_1_docosenoic_acid_g_usda
0.06
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.39
mped_add_sug_usda
21.69
mped_dairy_cheese_usda
1.32
mped_dairy_milk_usda
0.14
mped_dairy_total_usda
1.47
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
32.62
mped_discfat_sol_usda
94.36
mped_fruit_citmlb_usda
0.08
mped_fruit_other_usda
0.19
mped_fruit_total_usda
0.27
mped_grain_nwhl_usda
1.53
mped_grain_total_usda
1.54
mped_grain_whl_usda
0.01
mped_legumes_usda
0.02
mped_m_egg_usda
2.25
mped_m_fish_hi_usda
0.56
mped_m_fish_lo_usda
0.81
mped_m_frank_usda
5.09
mped_m_meat_usda
5.41
mped_m_mpf_usda
15.74
mped_m_nutsd_usda
1.09
mped_m_organ_usda
0
mped_m_poult_usda
3.87
mped_m_soy_usda
0.1
mped_vegetable_dpyel_usda
0.29
mped_vegetable_drkgr_usda
1.37
mped_vegetable_other_usda
0.88
mped_vegetable_potato_usda
0.22
mped_vegetable_starcy_usda
0.11
mped_vegetable_tomato_usda
0.37
mped_vegetable_total_usda
3.24
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
39.3
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
22.15
pfa_18_3_octadecatrienoic_acig_g_usda
2.55
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.47
pfa_20_5_eicosapentaenoic_acid_g_usda
0.14
pfa_22_5_docosapentaenoic_acid_g_usda
0.05
pfa_22_6_docosahexaenoic_acid_g_usda
0.25
phosphorus_mg_usda
2042.76
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3819.78
probiotics_1wk
No
protein_g_usda
165.8
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
546.34
riboflavin_vitamin_b2_mg_usda
2.87
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.neg.GLD012
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
193.56
sfa_10_0_decanoic_acid_g_usda
0.88
sfa_12_0_dodecanoic_acid_g_usda
0.93
sfa_14_0_tetradecanoic_acid_g_usda
4.89
sfa_16_0_hexadecanoic_acid_g_usda
33.25
sfa_18_0_octadecanoic_acid_g_usda
14.84
sfa_4_0_butanoic_acid_g_usda
1.14
sfa_6_0_hexanoic_acid_g_usda
0.61
sfa_8_0_octanoic_acid_g_usda
0.4
sodium_mg_usda
6754.66
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.59
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
170.61
total_folate_mcg_usda
450.98
total_monounsaturated_fatty_acids_g_usda
68.23
total_polyunsaturated_fatty_acids_g_usda
26.73
total_saturated_fatty_acids_g_usda
59.15
total_sugars_g_usda
73.57
triglycerides
57
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
vitamin_a_rae_mcg_usda
1599.1
vitamin_b12_mcg_usda
10.82
vitamin_b6_mg_usda
2.9
vitamin_c_mg_usda
83.83
vitamin_e_as_alpha_tocopherol_mg_usda
12.61
vitamin_k_mcg_usda
564.84
watery_diarrhea_24hr_new
NO
zinc_mg_usda
23.53