13338.St.chronic.GLD028.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617023
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD028.U
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
8.7
alcohol_g_usda
21.48
alpha_carotene_mcg_usda
98.43
beta_carotene_mcg_usda
763.92
beta_cryptoxanthin_mcg_usda
67.19
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
526.38
calcium_mg_usda
520.37
carbohydrate_g_usda
102.77
cd4_cd38_single_positive_cells
68
cd4_count
598
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
1
cd4_nadir
598
cd4_percent
43
cd8_cd38_single_positive_cells
2
cd8_count
445
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
11
cd8_percent
32
cholesterol_drugs_1mo
No
cholesterol_mg_usda
169.53
cohort
HIV untreated
collection_timestamp
5/5/15
constipation_24hr_new
NO
copper_mg_usda
0.92
crp_ng_ml
2194.867041
decreased_stools_new
1
dietary_fiber_g_usda
7.7
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1223.82
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
248.86
folic_acid_mcg_usda
56.33
food_folate_mcg_usda
153.08
gender
male
gi_summary_score
1.285714286
glucose
85
gm_csf_pg_ml
0.121064451
gramwt_g_usda
2970.13
hard_stools_new
2
hdl
34
heartburn_new
1
hispanic
No
host age
36
host body habitat
colon
host body mass index
25.4
host body product
feces
host common name
human
host height
185
host scientific name
Homo sapiens
host subject id
HIV115
host taxid
9606
host weight
87
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
308.3733353
ifabp_pg_ml
2707.127
il_10_pg_ml
229.4092473
il_12_23p40_pg_ml
217.35137
il_15_pg_ml
4.33891346
il_16_pg_ml
406.3027341
il_17a_pg_ml
3.651199685
il_22_pg_ml
351.7466807
il_6_pg_ml
253.1809271
il_7_pg_ml
17.28640406
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
insulin
4
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
7.18
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5307.432432
ldl
112
leptin
2.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
680.78
lycopene_mcg_usda
2662.27
lymphocyte_count
1391
lymphocyte_percent
29.6
magnesium_mg_usda
235.14
mcp_1_pg_ml
8366.617172
metab_disease_score_binary
LOW
metabolic_disease_score
1.28018576
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.74
mfa_18_1_octadecenoic_acid_g_usda
17.83
mfa_20_1_eicosenoic_acid_g_usda
0.36
mfa_22_1_docosenoic_acid_g_usda
0.14
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.51
mped_add_sug_usda
7.92
mped_dairy_cheese_usda
0.17
mped_dairy_milk_usda
0.33
mped_dairy_total_usda
0.85
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
16.29
mped_discfat_sol_usda
15.71
mped_fruit_citmlb_usda
0.24
mped_fruit_other_usda
0.27
mped_fruit_total_usda
0.52
mped_grain_nwhl_usda
1.58
mped_grain_total_usda
1.76
mped_grain_whl_usda
0.18
mped_legumes_usda
0.03
mped_m_egg_usda
0.19
mped_m_fish_hi_usda
1.25
mped_m_fish_lo_usda
0.51
mped_m_frank_usda
0.14
mped_m_meat_usda
0.82
mped_m_mpf_usda
4.4
mped_m_nutsd_usda
1.71
mped_m_organ_usda
0
mped_m_poult_usda
1.68
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.11
mped_vegetable_other_usda
0.21
mped_vegetable_potato_usda
0.07
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.19
mped_vegetable_total_usda
0.67
nadir_date
5/5/15
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
21.52
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.85
pfa_18_3_octadecatrienoic_acig_g_usda
0.77
pfa_18_4_octadecatetraenoic_acid_g_usda
0.04
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0.2
pfa_22_5_docosapentaenoic_acid_g_usda
0.06
pfa_22_6_docosahexaenoic_acid_g_usda
0.31
phosphorus_mg_usda
874.5
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2185.69
probiotics_1wk
No
protein_g_usda
60.85
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
237.96
riboflavin_vitamin_b2_mg_usda
1.83
saa_ng_ml
1025.245032
sample name
qiita_sid_13338:13338.St.chronic.GLD028.U
sample type
stool
scd14_pg_ml
1451984.738
scd163_ng_ml
705.8899202
selenium_mcg_usda
73.72
sfa_10_0_decanoic_acid_g_usda
0.23
sfa_12_0_dodecanoic_acid_g_usda
0.52
sfa_14_0_tetradecanoic_acid_g_usda
1.06
sfa_16_0_hexadecanoic_acid_g_usda
7.17
sfa_18_0_octadecanoic_acid_g_usda
2.85
sfa_4_0_butanoic_acid_g_usda
0.25
sfa_6_0_hexanoic_acid_g_usda
0.14
sfa_8_0_octanoic_acid_g_usda
0.14
sodium_mg_usda
1528.74
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.85
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
954.3868704
tnf_beta_pg_ml
0.23165389
total_fat_g_usda
49.76
total_folate_mcg_usda
209.35
total_monounsaturated_fatty_acids_g_usda
19.35
total_polyunsaturated_fatty_acids_g_usda
10.46
total_saturated_fatty_acids_g_usda
13.14
total_sugars_g_usda
54.35
triglycerides
97
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
613.0744558
vegf_pg_ml
153.4006979
viral load
159
vitamin_a_rae_mcg_usda
308.41
vitamin_b12_mcg_usda
4.57
vitamin_b6_mg_usda
1.3
vitamin_c_mg_usda
52.91
vitamin_e_as_alpha_tocopherol_mg_usda
6.72
vitamin_k_mcg_usda
62.46
watery_diarrhea_24hr_new
NO
zinc_mg_usda
7.38