13338.St.neg.GLD159
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617112
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:22Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD159
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
acid_regurgitation_new
1
adiponectin
13.9
alcohol_g_usda
0.87
alpha_carotene_mcg_usda
1251.97
beta_carotene_mcg_usda
28375.89
beta_cryptoxanthin_mcg_usda
67.7
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
20.29
calcium_mg_usda
1432.42
carbohydrate_g_usda
224.61
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
257.4
cohort
HIV negative MSM
collection_timestamp
5/30/17
constipation_24hr_new
NO
copper_mg_usda
3.24
crp_ng_ml
1210.433184
decreased_stools_new
1
dietary_fiber_g_usda
31.72
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2185.39
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
976.09
folic_acid_mcg_usda
163.1
food_folate_mcg_usda
698.76
gender
male
gi_summary_score
1
glucose
98
gm_csf_pg_ml
0.370350717
gramwt_g_usda
11821.73
hard_stools_new
1
hdl
44
heartburn_new
1
hispanic
No
host age
32
host body habitat
colon
host body mass index
25.5
host body product
feces
host common name
human
host height
170
host scientific name
Homo sapiens
host subject id
HIV281
host taxid
9606
host weight
73.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
381.9251426
ifabp_pg_ml
2534.745
il_10_pg_ml
244.7958442
il_12_23p40_pg_ml
231.2602796
il_15_pg_ml
4.73644467
il_16_pg_ml
223.2632554
il_17a_pg_ml
5.887629963
il_22_pg_ml
330.6777944
il_6_pg_ml
358.6699643
il_7_pg_ml
10.73477701
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
3
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
25.58
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6936.170213
ldl
96
leptin
3.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
32839.5
lycopene_mcg_usda
5920.52
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
695.08
mcp_1_pg_ml
9450.921413
metab_disease_score_binary
LOW
metabolic_disease_score
1.207146941
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.3
mfa_18_1_octadecenoic_acid_g_usda
38.84
mfa_20_1_eicosenoic_acid_g_usda
0.48
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
Yes
mped_a_bev_usda
0.06
mped_add_sug_usda
7.08
mped_dairy_cheese_usda
0.67
mped_dairy_milk_usda
0.27
mped_dairy_total_usda
0.96
mped_dairy_yogurt_usda
0.01
mped_discfat_oil_usda
49.43
mped_discfat_sol_usda
27.77
mped_fruit_citmlb_usda
0.12
mped_fruit_other_usda
0.63
mped_fruit_total_usda
0.75
mped_grain_nwhl_usda
4.87
mped_grain_total_usda
5.96
mped_grain_whl_usda
1.09
mped_legumes_usda
0.07
mped_m_egg_usda
1.18
mped_m_fish_hi_usda
0.48
mped_m_fish_lo_usda
0.24
mped_m_frank_usda
0.13
mped_m_meat_usda
1.42
mped_m_mpf_usda
4.74
mped_m_nutsd_usda
4.16
mped_m_organ_usda
0
mped_m_poult_usda
2.46
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.56
mped_vegetable_drkgr_usda
3.16
mped_vegetable_other_usda
0.53
mped_vegetable_potato_usda
0.08
mped_vegetable_starcy_usda
0.33
mped_vegetable_tomato_usda
0.31
mped_vegetable_total_usda
4.98
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
35.65
no_symptoms_24hr_new
YES
pfa_18_2_octadecadienoic_acid_g_usda
24.44
pfa_18_3_octadecatrienoic_acig_g_usda
2.28
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.13
phosphorus_mg_usda
1586.65
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4125.24
probiotics_1wk
No
protein_g_usda
107.72
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
632.13
riboflavin_vitamin_b2_mg_usda
2.75
saa_ng_ml
4217.692855
sample name
qiita_sid_13338:13338.St.neg.GLD159
sample type
stool
scd14_pg_ml
1518675.206
scd163_ng_ml
627.1905392
selenium_mcg_usda
145.17
sfa_10_0_decanoic_acid_g_usda
0.22
sfa_12_0_dodecanoic_acid_g_usda
0.47
sfa_14_0_tetradecanoic_acid_g_usda
1.49
sfa_16_0_hexadecanoic_acid_g_usda
14.56
sfa_18_0_octadecanoic_acid_g_usda
5.77
sfa_4_0_butanoic_acid_g_usda
0.34
sfa_6_0_hexanoic_acid_g_usda
0.12
sfa_8_0_octanoic_acid_g_usda
0.14
sodium_mg_usda
4405.63
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.12
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
636.8435022
tnf_beta_pg_ml
0.431003514
total_fat_g_usda
101.63
total_folate_mcg_usda
863.18
total_monounsaturated_fatty_acids_g_usda
41.01
total_polyunsaturated_fatty_acids_g_usda
27.44
total_saturated_fatty_acids_g_usda
24.71
total_sugars_g_usda
73.14
triglycerides
119
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
603.6739222
vegf_pg_ml
37.73540525
vitamin_a_rae_mcg_usda
3052
vitamin_b12_mcg_usda
4.24
vitamin_b6_mg_usda
3.05
vitamin_c_mg_usda
154.67
vitamin_e_as_alpha_tocopherol_mg_usda
20.47
vitamin_k_mcg_usda
1555.9
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.12