13338.St.chronic.GLD042.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617030
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD042.U
abdominal_distension_new
3
abdominal_pain_24hr_new
YES
abdominal_pains_new
3
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
1
adiponectin
20.2
alcohol_g_usda
5.66
alpha_carotene_mcg_usda
1903.16
beta_carotene_mcg_usda
6415.16
beta_cryptoxanthin_mcg_usda
200.91
bloating_24hr_new
NO
borborygmus_new
3
bristol_stool_scale_sample
4
caffeine_mg_usda
51.31
calcium_mg_usda
776.77
carbohydrate_g_usda
184.14
cd4_cd38_single_positive_cells
67
cd4_count
616
cd4_hladr_cd38_percent
15
cd4_hladr_single_positive_cells
4
cd4_nadir
616
cd4_percent
20
cd8_cd38_single_positive_cells
39
cd8_count
2064
cd8_hladr_cd38_percent
56
cd8_hladr_single_positive_cells
0
cd8_percent
67
cholesterol_drugs_1mo
No
cholesterol_mg_usda
355.83
cohort
HIV untreated
collection_timestamp
9/24/15
constipation_24hr_new
NO
copper_mg_usda
1.23
crp_ng_ml
1788.806289
decreased_stools_new
2
dietary_fiber_g_usda
12.78
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1635.07
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
353.45
folic_acid_mcg_usda
74.39
food_folate_mcg_usda
227.01
gender
male
gi_summary_score
2.384615385
glucose
91
gm_csf_pg_ml
0.429537451
gramwt_g_usda
2754.75
hard_stools_new
2
hdl
34
heartburn_new
2
hispanic
No
host age
44
host body habitat
colon
host body mass index
20
host body product
feces
host common name
human
host height
178
host scientific name
Homo sapiens
host subject id
HIV120
host taxid
9606
host weight
63.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
619.8592913
ifabp_pg_ml
1123.833
il_10_pg_ml
487.6804121
il_12_23p40_pg_ml
812.1041289
il_15_pg_ml
2.589491126
il_16_pg_ml
767.1642903
il_17a_pg_ml
4.986038245
il_22_pg_ml
787.2743074
il_6_pg_ml
840.6437434
il_7_pg_ml
8.972518202
incomplete_evacuation_new
3
increased_flatus_new
3
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.7
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
9944.256757
ldl
113
leptin
2.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
2600.43
lycopene_mcg_usda
14517.13
lymphocyte_count
3081
lymphocyte_percent
48.9
magnesium_mg_usda
253.4
mcp_1_pg_ml
8042.109911
metab_disease_score_binary
LOW
metabolic_disease_score
1.091967628
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.26
mfa_18_1_octadecenoic_acid_g_usda
25.23
mfa_20_1_eicosenoic_acid_g_usda
0.26
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.39
mped_add_sug_usda
10.86
mped_dairy_cheese_usda
0.34
mped_dairy_milk_usda
0.57
mped_dairy_total_usda
1.26
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
14.39
mped_discfat_sol_usda
40.46
mped_fruit_citmlb_usda
0.71
mped_fruit_other_usda
0.78
mped_fruit_total_usda
1.49
mped_grain_nwhl_usda
2.99
mped_grain_total_usda
3.32
mped_grain_whl_usda
0.33
mped_legumes_usda
0.08
mped_m_egg_usda
1
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.39
mped_m_frank_usda
0.24
mped_m_meat_usda
2.08
mped_m_mpf_usda
3.37
mped_m_nutsd_usda
0.44
mped_m_organ_usda
0.01
mped_m_poult_usda
0.38
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.24
mped_vegetable_drkgr_usda
0.26
mped_vegetable_other_usda
0.47
mped_vegetable_potato_usda
0.26
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.69
mped_vegetable_total_usda
1.96
nadir_date
9/24/15
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
17.15
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.05
pfa_18_3_octadecatrienoic_acig_g_usda
1.24
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.16
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.1
phosphorus_mg_usda
1096.65
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2793.26
probiotics_1wk
yes- yogurt, probiotic drink, probiotic tablets
protein_g_usda
66.21
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
332.01
riboflavin_vitamin_b2_mg_usda
1.77
saa_ng_ml
2105.530958
sample name
qiita_sid_13338:13338.St.chronic.GLD042.U
sample type
stool
scd14_pg_ml
1988102.18
scd163_ng_ml
1360.274308
selenium_mcg_usda
89.52
sfa_10_0_decanoic_acid_g_usda
0.39
sfa_12_0_dodecanoic_acid_g_usda
0.7
sfa_14_0_tetradecanoic_acid_g_usda
1.93
sfa_16_0_hexadecanoic_acid_g_usda
12.84
sfa_18_0_octadecanoic_acid_g_usda
5.79
sfa_4_0_butanoic_acid_g_usda
0.48
sfa_6_0_hexanoic_acid_g_usda
0.26
sfa_8_0_octanoic_acid_g_usda
0.21
sodium_mg_usda
3018.68
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.16
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1561.290466
tnf_beta_pg_ml
0.444952808
total_fat_g_usda
68.93
total_folate_mcg_usda
301.48
total_monounsaturated_fatty_acids_g_usda
27.09
total_polyunsaturated_fatty_acids_g_usda
12.29
total_saturated_fatty_acids_g_usda
23.27
total_sugars_g_usda
98.32
triglycerides
58
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
2
vcam_1_ng_ml
885.850029
vegf_pg_ml
129.1909287
viral load
518000
vitamin_a_rae_mcg_usda
954.66
vitamin_b12_mcg_usda
4.8
vitamin_b6_mg_usda
1.85
vitamin_c_mg_usda
138.05
vitamin_e_as_alpha_tocopherol_mg_usda
6.84
vitamin_k_mcg_usda
138.95
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.56