13338.St.neg.GLD127
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617107
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD127
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
22.6
alcohol_g_usda
11.69
alpha_carotene_mcg_usda
493.11
beta_carotene_mcg_usda
1958.74
beta_cryptoxanthin_mcg_usda
463.15
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
64.81
calcium_mg_usda
1392.21
carbohydrate_g_usda
331.23
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
361.38
cohort
HIV negative MSW
collection_timestamp
6/22/16
constipation_24hr_new
NO
copper_mg_usda
1.85
crp_ng_ml
2413.009548
decreased_stools_new
1
dietary_fiber_g_usda
21.06
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2745.66
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1029.65
folic_acid_mcg_usda
417.21
food_folate_mcg_usda
320.42
gender
male
gi_summary_score
1.571428571
glucose
78
gm_csf_pg_ml
0.366258412
gramwt_g_usda
3642.36
hard_stools_new
1
hdl
45
heartburn_new
2
hispanic
No
host age
37
host body habitat
colon
host body mass index
30.4
host body product
feces
host common name
human
host height
185
host scientific name
Homo sapiens
host subject id
HIV219
host taxid
9606
host weight
104.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
381.1865594
ifabp_pg_ml
1351.956
il_10_pg_ml
361.3668709
il_12_23p40_pg_ml
143.5361286
il_15_pg_ml
4.193534162
il_16_pg_ml
44.14496327
il_17a_pg_ml
8.13988779
il_22_pg_ml
465.8362801
il_6_pg_ml
291.3078794
il_7_pg_ml
13.73728242
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
28.96
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6132.387707
ldl
114
leptin
14.2
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
4
lutein_zeaxanthin_mcg_usda
1866.85
lycopene_mcg_usda
6647.44
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
417.24
mcp_1_pg_ml
10285.34176
metab_disease_score_binary
LOW
metabolic_disease_score
0.885739314
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.8
mfa_18_1_octadecenoic_acid_g_usda
32.88
mfa_20_1_eicosenoic_acid_g_usda
0.28
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.85
mped_add_sug_usda
20.99
mped_dairy_cheese_usda
0.85
mped_dairy_milk_usda
1.78
mped_dairy_total_usda
2.7
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
21.81
mped_discfat_sol_usda
49.14
mped_fruit_citmlb_usda
1.37
mped_fruit_other_usda
0.39
mped_fruit_total_usda
1.75
mped_grain_nwhl_usda
6
mped_grain_total_usda
7.31
mped_grain_whl_usda
1.31
mped_legumes_usda
0.03
mped_m_egg_usda
0.34
mped_m_fish_hi_usda
0.26
mped_m_fish_lo_usda
0.4
mped_m_frank_usda
4.25
mped_m_meat_usda
2.87
mped_m_mpf_usda
9.35
mped_m_nutsd_usda
1
mped_m_organ_usda
0
mped_m_poult_usda
1.57
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.09
mped_vegetable_drkgr_usda
0.14
mped_vegetable_other_usda
0.64
mped_vegetable_potato_usda
0.36
mped_vegetable_starcy_usda
0.31
mped_vegetable_tomato_usda
0.35
mped_vegetable_total_usda
1.89
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
42.5
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
16.83
pfa_18_3_octadecatrienoic_acig_g_usda
1.69
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.21
pfa_20_5_eicosapentaenoic_acid_g_usda
0.06
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.11
phosphorus_mg_usda
2039.06
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4016.48
probiotics_1wk
No
protein_g_usda
125.54
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
818.53
riboflavin_vitamin_b2_mg_usda
3.8
saa_ng_ml
2627.174769
sample name
qiita_sid_13338:13338.St.neg.GLD127
sample type
stool
scd14_pg_ml
1278248.503
scd163_ng_ml
570.68391
selenium_mcg_usda
146.99
sfa_10_0_decanoic_acid_g_usda
0.59
sfa_12_0_dodecanoic_acid_g_usda
1.4
sfa_14_0_tetradecanoic_acid_g_usda
3.01
sfa_16_0_hexadecanoic_acid_g_usda
17.75
sfa_18_0_octadecanoic_acid_g_usda
8.67
sfa_4_0_butanoic_acid_g_usda
0.73
sfa_6_0_hexanoic_acid_g_usda
0.35
sfa_8_0_octanoic_acid_g_usda
0.34
sodium_mg_usda
5026.91
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.05
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
598.7946666
tnf_beta_pg_ml
1.196712051
total_fat_g_usda
97.75
total_folate_mcg_usda
737.57
total_monounsaturated_fatty_acids_g_usda
35.98
total_polyunsaturated_fatty_acids_g_usda
19.18
total_saturated_fatty_acids_g_usda
34.3
total_sugars_g_usda
160.49
triglycerides
79
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
511.2984183
vegf_pg_ml
56.97780815
vitamin_a_rae_mcg_usda
1024.11
vitamin_b12_mcg_usda
10.72
vitamin_b6_mg_usda
3.89
vitamin_c_mg_usda
199.15
vitamin_e_as_alpha_tocopherol_mg_usda
9.14
vitamin_k_mcg_usda
93.66
watery_diarrhea_24hr_new
NO
zinc_mg_usda
20.09