13338.St.neg.GLD050
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617086
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD050
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
2.7
alcohol_g_usda
0
alpha_carotene_mcg_usda
912.44
beta_carotene_mcg_usda
3813.29
beta_cryptoxanthin_mcg_usda
449.18
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
2
caffeine_mg_usda
296.09
calcium_mg_usda
1260.2
carbohydrate_g_usda
566.61
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
248.2
cohort
HIV negative MSM
collection_timestamp
12/14/15
constipation_24hr_new
YES
copper_mg_usda
1.86
crp_ng_ml
273.764014
decreased_stools_new
2
dietary_fiber_g_usda
18.01
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3366.77
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
658.34
folic_acid_mcg_usda
199.07
food_folate_mcg_usda
319.8
gender
male
gi_summary_score
1.571428571
glucose
103
gm_csf_pg_ml
0.514389792
gramwt_g_usda
5960.59
hard_stools_new
1
hdl
27
heartburn_new
1
hispanic
No
host age
48
host body habitat
colon
host body mass index
25.4
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV163
host taxid
9606
host weight
79.7
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
178.5031508
ifabp_pg_ml
614.497
il_10_pg_ml
214.7981703
il_12_23p40_pg_ml
85.40691894
il_15_pg_ml
5.565477266
il_16_pg_ml
8093.278569
il_17a_pg_ml
1.709674352
il_22_pg_ml
235.7780953
il_6_pg_ml
239.2233357
il_7_pg_ml
39.18870926
incomplete_evacuation_new
1
increased_flatus_new
4
increased_stools_new
1
insulin
30
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
22.97
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
3996.240602
ldl
75
leptin
15.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
3230.03
lycopene_mcg_usda
8386.23
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
368.94
mcp_1_pg_ml
9369.757506
metab_disease_score_binary
HIGH
metabolic_disease_score
1.855396928
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.51
mfa_18_1_octadecenoic_acid_g_usda
29.45
mfa_20_1_eicosenoic_acid_g_usda
0.22
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0
mped_add_sug_usda
76.47
mped_dairy_cheese_usda
0.64
mped_dairy_milk_usda
0.58
mped_dairy_total_usda
1.22
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
20.63
mped_discfat_sol_usda
46.46
mped_fruit_citmlb_usda
1.23
mped_fruit_other_usda
1.52
mped_fruit_total_usda
2.75
mped_grain_nwhl_usda
7.93
mped_grain_total_usda
9.15
mped_grain_whl_usda
1.21
mped_legumes_usda
0.02
mped_m_egg_usda
0.61
mped_m_fish_hi_usda
0.29
mped_m_fish_lo_usda
0.19
mped_m_frank_usda
0.34
mped_m_meat_usda
3.42
mped_m_mpf_usda
5.42
mped_m_nutsd_usda
0.27
mped_m_organ_usda
0
mped_m_poult_usda
1.17
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.1
mped_vegetable_drkgr_usda
0.4
mped_vegetable_other_usda
0.37
mped_vegetable_potato_usda
0.65
mped_vegetable_starcy_usda
0.13
mped_vegetable_tomato_usda
0.41
mped_vegetable_total_usda
2.07
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
31.88
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
15.5
pfa_18_3_octadecatrienoic_acig_g_usda
1.74
pfa_18_4_octadecatetraenoic_acid_g_usda
0.03
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
1551.55
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3726.85
probiotics_1wk
Yes
protein_g_usda
96.27
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
498.17
riboflavin_vitamin_b2_mg_usda
2.27
saa_ng_ml
114.748656
sample name
qiita_sid_13338:13338.St.neg.GLD050
sample type
stool
scd14_pg_ml
971683.4064
scd163_ng_ml
840.6944612
selenium_mcg_usda
127.57
sfa_10_0_decanoic_acid_g_usda
0.42
sfa_12_0_dodecanoic_acid_g_usda
0.52
sfa_14_0_tetradecanoic_acid_g_usda
2.4
sfa_16_0_hexadecanoic_acid_g_usda
15.43
sfa_18_0_octadecanoic_acid_g_usda
7.56
sfa_4_0_butanoic_acid_g_usda
0.58
sfa_6_0_hexanoic_acid_g_usda
0.31
sfa_8_0_octanoic_acid_g_usda
0.22
sodium_mg_usda
4054.34
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.17
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
473.2619606
tnf_beta_pg_ml
0.631211379
total_fat_g_usda
86.06
total_folate_mcg_usda
518.87
total_monounsaturated_fatty_acids_g_usda
31.81
total_polyunsaturated_fatty_acids_g_usda
17.75
total_saturated_fatty_acids_g_usda
28.39
total_sugars_g_usda
371.32
triglycerides
277
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
279.3596278
vegf_pg_ml
703.0727461
vitamin_a_rae_mcg_usda
873.23
vitamin_b12_mcg_usda
6.17
vitamin_b6_mg_usda
2.8
vitamin_c_mg_usda
203.9
vitamin_e_as_alpha_tocopherol_mg_usda
9.18
vitamin_k_mcg_usda
194.55
watery_diarrhea_24hr_new
NO
zinc_mg_usda
15.74