13338.St.neg.GLD083
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617094
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:20Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD083
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
72
alcohol_g_usda
0.55
alpha_carotene_mcg_usda
389.59
beta_carotene_mcg_usda
4054.07
beta_cryptoxanthin_mcg_usda
51.13
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
165.95
calcium_mg_usda
986.58
carbohydrate_g_usda
175.01
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholest_type
niacin, fish oil
cholesterol_drugs_1mo
Yes
cholesterol_mg_usda
138.57
cohort
HIV negative MSW
collection_timestamp
3/15/16
constipation_24hr_new
NO
copper_mg_usda
1.26
crp_ng_ml
354.153756
decreased_stools_new
1
dietary_fiber_g_usda
15.45
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1427.64
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
545.73
folic_acid_mcg_usda
176.38
food_folate_mcg_usda
245.91
gender
male
gi_summary_score
1
glucose
110
gm_csf_pg_ml
0.286710475
gramwt_g_usda
4399.55
hard_stools_new
1
hdl
46
heartburn_new
1
hispanic
No
host age
70
host body habitat
colon
host body mass index
27.4
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV184
host taxid
9606
host weight
84.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
328.3866304
ifabp_pg_ml
1752.464
il_10_pg_ml
349.242216
il_12_23p40_pg_ml
194.0047151
il_15_pg_ml
5.8724021
il_16_pg_ml
203.7677585
il_17a_pg_ml
3.12954303
il_22_pg_ml
122.0392336
il_6_pg_ml
443.9171476
il_7_pg_ml
9.914552455
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
6
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
14.07
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8060.810811
ldl
39
leptin
7.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
4435.39
lycopene_mcg_usda
2530.34
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
296.09
mcp_1_pg_ml
8678.32652
metab_disease_score_binary
LOW
metabolic_disease_score
0
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.88
mfa_18_1_octadecenoic_acid_g_usda
19.45
mfa_20_1_eicosenoic_acid_g_usda
0.16
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.04
mped_add_sug_usda
11.72
mped_dairy_cheese_usda
0.42
mped_dairy_milk_usda
0.93
mped_dairy_total_usda
1.46
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
13.27
mped_discfat_sol_usda
29.42
mped_fruit_citmlb_usda
0.19
mped_fruit_other_usda
0.78
mped_fruit_total_usda
0.97
mped_grain_nwhl_usda
3.46
mped_grain_total_usda
4.19
mped_grain_whl_usda
0.73
mped_legumes_usda
0.05
mped_m_egg_usda
0.05
mped_m_fish_hi_usda
0.15
mped_m_fish_lo_usda
0.36
mped_m_frank_usda
0.45
mped_m_meat_usda
1.7
mped_m_mpf_usda
3.07
mped_m_nutsd_usda
1.28
mped_m_organ_usda
0
mped_m_poult_usda
0.41
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.08
mped_vegetable_drkgr_usda
0.65
mped_vegetable_other_usda
0.56
mped_vegetable_potato_usda
0.22
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.17
mped_vegetable_total_usda
1.73
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
20.73
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
9.02
pfa_18_3_octadecatrienoic_acig_g_usda
0.93
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.06
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
1036.95
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2333.3
probiotics_1wk
not collected
protein_g_usda
62.45
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
429.1
riboflavin_vitamin_b2_mg_usda
2.21
saa_ng_ml
1721.641025
sample name
qiita_sid_13338:13338.St.neg.GLD083
sample type
stool
scd14_pg_ml
1095690.021
scd163_ng_ml
735.6046502
selenium_mcg_usda
77.89
sfa_10_0_decanoic_acid_g_usda
0.49
sfa_12_0_dodecanoic_acid_g_usda
0.95
sfa_14_0_tetradecanoic_acid_g_usda
2.11
sfa_16_0_hexadecanoic_acid_g_usda
10.21
sfa_18_0_octadecanoic_acid_g_usda
4.59
sfa_4_0_butanoic_acid_g_usda
0.62
sfa_6_0_hexanoic_acid_g_usda
0.33
sfa_8_0_octanoic_acid_g_usda
0.27
sodium_mg_usda
2405.5
statin_type
simvastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.51
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
757.6120211
tnf_beta_pg_ml
0.222141787
total_fat_g_usda
56.76
total_folate_mcg_usda
423.24
total_monounsaturated_fatty_acids_g_usda
20.92
total_polyunsaturated_fatty_acids_g_usda
10.18
total_saturated_fatty_acids_g_usda
20.31
total_sugars_g_usda
75.57
triglycerides
49
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
455.7296941
vegf_pg_ml
46.09214364
vitamin_a_rae_mcg_usda
785.29
vitamin_b12_mcg_usda
4.94
vitamin_b6_mg_usda
1.89
vitamin_c_mg_usda
67.18
vitamin_e_as_alpha_tocopherol_mg_usda
7.2
vitamin_k_mcg_usda
245.01
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.61