13338.St.chronic.GLD007.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617013
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD007.U
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
15.1
alcohol_g_usda
34.52
alpha_carotene_mcg_usda
1077.74
beta_carotene_mcg_usda
5560.01
beta_cryptoxanthin_mcg_usda
301.96
bloating_24hr_new
YES
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
120.72
calcium_mg_usda
496.61
carbohydrate_g_usda
179.45
cd4_cd38_single_positive_cells
90
cd4_count
478
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
0
cd4_nadir
498
cd4_percent
33
cd8_cd38_single_positive_cells
30
cd8_count
609
cd8_hladr_cd38_percent
55
cd8_hladr_single_positive_cells
3
cd8_percent
42
cholesterol_drugs_1mo
No
cholesterol_mg_usda
179.17
cohort
HIV untreated
collection_timestamp
12/16/14
constipation_24hr_new
NO
copper_mg_usda
1.24
crp_ng_ml
1888.788319
decreased_stools_new
1
dietary_fiber_g_usda
12.46
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1667.86
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
345.13
folic_acid_mcg_usda
67.58
food_folate_mcg_usda
230.32
gender
male
gi_summary_score
1.5
glucose
80
gm_csf_pg_ml
0.191363891
gramwt_g_usda
3078.12
hard_stools_new
1
hdl
37
heartburn_new
2
hispanic
No
host age
35
host body habitat
colon
host body mass index
21
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV090
host taxid
9606
host weight
61.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
436.6162168
ifabp_pg_ml
1273.092
il_10_pg_ml
440.1079037
il_12_23p40_pg_ml
137.7088851
il_15_pg_ml
3.352213684
il_16_pg_ml
589.8554316
il_17a_pg_ml
3.485376529
il_22_pg_ml
416.4580075
il_6_pg_ml
354.5718057
il_7_pg_ml
9.003412637
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
9.68
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
9108.108108
ldl
56
leptin
1.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2917.04
lycopene_mcg_usda
7190.49
lymphocyte_count
1449
lymphocyte_percent
34.5
magnesium_mg_usda
236.72
mcp_1_pg_ml
7909.955224
metab_disease_score_binary
LOW
metabolic_disease_score
1.086262645
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.85
mfa_18_1_octadecenoic_acid_g_usda
23.39
mfa_20_1_eicosenoic_acid_g_usda
0.19
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
2.45
mped_add_sug_usda
11.85
mped_dairy_cheese_usda
0.42
mped_dairy_milk_usda
0.08
mped_dairy_total_usda
0.55
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
18.35
mped_discfat_sol_usda
28.55
mped_fruit_citmlb_usda
0.91
mped_fruit_other_usda
0.38
mped_fruit_total_usda
1.29
mped_grain_nwhl_usda
3.12
mped_grain_total_usda
3.51
mped_grain_whl_usda
0.39
mped_legumes_usda
0.05
mped_m_egg_usda
0.35
mped_m_fish_hi_usda
0.19
mped_m_fish_lo_usda
0.51
mped_m_frank_usda
0.39
mped_m_meat_usda
1.09
mped_m_mpf_usda
2.67
mped_m_nutsd_usda
1.24
mped_m_organ_usda
0.01
mped_m_poult_usda
0.48
mped_m_soy_usda
0.08
mped_vegetable_dpyel_usda
0.29
mped_vegetable_drkgr_usda
0.25
mped_vegetable_other_usda
0.47
mped_vegetable_potato_usda
0.36
mped_vegetable_starcy_usda
0.07
mped_vegetable_tomato_usda
0.38
mped_vegetable_total_usda
1.82
nadir_date
10/14/14
nadir_report
Medical records report
nadir_years
0.17
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
Yes
niacin_mg_usda
15.55
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
11.54
pfa_18_3_octadecatrienoic_acig_g_usda
1.18
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.08
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.07
phosphorus_mg_usda
832.71
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2350.71
probiotics_1wk
No
protein_g_usda
51.07
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
164.24
riboflavin_vitamin_b2_mg_usda
1.24
saa_ng_ml
8742.805595
sample name
qiita_sid_13338:13338.St.chronic.GLD007.U
sample type
stool
scd14_pg_ml
1770304.469
scd163_ng_ml
874.2733904
selenium_mcg_usda
76.29
sfa_10_0_decanoic_acid_g_usda
0.21
sfa_12_0_dodecanoic_acid_g_usda
0.27
sfa_14_0_tetradecanoic_acid_g_usda
1.21
sfa_16_0_hexadecanoic_acid_g_usda
9.36
sfa_18_0_octadecanoic_acid_g_usda
4.3
sfa_4_0_butanoic_acid_g_usda
0.3
sfa_6_0_hexanoic_acid_g_usda
0.14
sfa_8_0_octanoic_acid_g_usda
0.11
sodium_mg_usda
2389.91
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.01
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
894.3731484
tnf_beta_pg_ml
0.269705468
total_fat_g_usda
59.59
total_folate_mcg_usda
297.78
total_monounsaturated_fatty_acids_g_usda
24.71
total_polyunsaturated_fatty_acids_g_usda
13.12
total_saturated_fatty_acids_g_usda
16.53
total_sugars_g_usda
90.45
triglycerides
102
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
970.1815768
vegf_pg_ml
74.92463518
viral load
32500
vitamin_a_rae_mcg_usda
685.34
vitamin_b12_mcg_usda
2.89
vitamin_b6_mg_usda
1.34
vitamin_c_mg_usda
135.21
vitamin_e_as_alpha_tocopherol_mg_usda
6.9
vitamin_k_mcg_usda
140.27
watery_diarrhea_24hr_new
YES
zinc_mg_usda
7.37