13338.St.neg.GLD017
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617080
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD017
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.7
alcohol_g_usda
111.22
alpha_carotene_mcg_usda
77.44
beta_carotene_mcg_usda
539.71
beta_cryptoxanthin_mcg_usda
45.93
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
70.94
calcium_mg_usda
678.76
carbohydrate_g_usda
226.08
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
145.74
cohort
HIV negative MSM
collection_timestamp
1/21/15
constipation_24hr_new
NO
copper_mg_usda
1.15
crp_ng_ml
857.5111622
decreased_stools_new
1
dietary_fiber_g_usda
9.88
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2466.86
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
280.35
folic_acid_mcg_usda
94.6
food_folate_mcg_usda
119.56
gender
male
gi_summary_score
1.714285714
glucose
85
gm_csf_pg_ml
0.145920978
gramwt_g_usda
5440.29
hard_stools_new
2
hdl
41
heartburn_new
2
hispanic
No
host age
38
host body habitat
colon
host body mass index
25.1
host body product
feces
host common name
human
host height
184
host scientific name
Homo sapiens
host subject id
HIV150
host taxid
9606
host weight
85.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
379.850064
ifabp_pg_ml
1137.085
il_10_pg_ml
232.3732072
il_12_23p40_pg_ml
153.5680436
il_15_pg_ml
3.660669939
il_16_pg_ml
421.4797111
il_17a_pg_ml
1.409453911
il_22_pg_ml
337.2916138
il_6_pg_ml
255.6304376
il_7_pg_ml
14.69549103
incomplete_evacuation_new
2
increased_flatus_new
3
increased_stools_new
2
insulin
11
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
9.61
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
12554.05405
ldl
167
leptin
12.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
425.06
lycopene_mcg_usda
4248.28
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
193.24
mcp_1_pg_ml
9706.551505
metab_disease_score_binary
LOW
metabolic_disease_score
1.373609371
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.21
mfa_18_1_octadecenoic_acid_g_usda
22.88
mfa_20_1_eicosenoic_acid_g_usda
0.15
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
7.78
mped_add_sug_usda
27.65
mped_dairy_cheese_usda
0.98
mped_dairy_milk_usda
0.12
mped_dairy_total_usda
1.1
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
15.57
mped_discfat_sol_usda
38.61
mped_fruit_citmlb_usda
0.11
mped_fruit_other_usda
0.12
mped_fruit_total_usda
0.23
mped_grain_nwhl_usda
4.35
mped_grain_total_usda
4.71
mped_grain_whl_usda
0.36
mped_legumes_usda
0.08
mped_m_egg_usda
0.04
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
1.03
mped_m_meat_usda
2.24
mped_m_mpf_usda
3.62
mped_m_nutsd_usda
0.16
mped_m_organ_usda
0
mped_m_poult_usda
0.35
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.01
mped_vegetable_drkgr_usda
0.04
mped_vegetable_other_usda
0.34
mped_vegetable_potato_usda
0.5
mped_vegetable_starcy_usda
0.02
mped_vegetable_tomato_usda
0.21
mped_vegetable_total_usda
1.12
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
14.83
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.8
pfa_18_3_octadecatrienoic_acig_g_usda
1.13
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
874.44
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1562.98
probiotics_1wk
No
protein_g_usda
55.94
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
147.14
riboflavin_vitamin_b2_mg_usda
1.09
saa_ng_ml
950.4156405
sample name
qiita_sid_13338:13338.St.neg.GLD017
sample type
stool
scd14_pg_ml
1210731.889
scd163_ng_ml
934.0330141
selenium_mcg_usda
69.99
sfa_10_0_decanoic_acid_g_usda
0.32
sfa_12_0_dodecanoic_acid_g_usda
0.44
sfa_14_0_tetradecanoic_acid_g_usda
2.02
sfa_16_0_hexadecanoic_acid_g_usda
12.55
sfa_18_0_octadecanoic_acid_g_usda
5.98
sfa_4_0_butanoic_acid_g_usda
0.49
sfa_6_0_hexanoic_acid_g_usda
0.25
sfa_8_0_octanoic_acid_g_usda
0.18
sodium_mg_usda
2719.58
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.9
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
777.7604091
tnf_beta_pg_ml
0.149410648
total_fat_g_usda
65.4
total_folate_mcg_usda
214.15
total_monounsaturated_fatty_acids_g_usda
24.87
total_polyunsaturated_fatty_acids_g_usda
12.19
total_saturated_fatty_acids_g_usda
23.01
total_sugars_g_usda
124.79
triglycerides
111
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
401.7133086
vegf_pg_ml
163.7576196
vitamin_a_rae_mcg_usda
197.3
vitamin_b12_mcg_usda
3.17
vitamin_b6_mg_usda
1.16
vitamin_c_mg_usda
37.54
vitamin_e_as_alpha_tocopherol_mg_usda
4.2
vitamin_k_mcg_usda
44.82
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.34