13338.St.neg.DM063.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617073
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM063.1
abdominal_distension_new
3
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
10
alcohol_g_usda
0
alpha_carotene_mcg_usda
1992.03
beta_carotene_mcg_usda
16312
beta_cryptoxanthin_mcg_usda
146.84
bloating_24hr_new
NO
borborygmus_new
3
bristol_stool_scale_sample
2
caffeine_mg_usda
56.86
calcium_mg_usda
3072.63
carbohydrate_g_usda
461.45
cd4_cd38_single_positive_cells
60
cd4_count
not collected
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_percent
not collected
cd8_cd38_single_positive_cells
25
cd8_count
not collected
cd8_hladr_cd38_percent
6
cd8_hladr_single_positive_cells
4
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
673.94
cohort
HIV negative MSM
collection_timestamp
10/18/17
constipation_24hr_new
YES
copper_mg_usda
3.72
crp_ng_ml
66.48609868
decreased_stools_new
1
dietary_fiber_g_usda
41.37
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3312.26
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
3
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
777.48
folic_acid_mcg_usda
115.62
food_folate_mcg_usda
581.28
gender
male
gi_summary_score
2
glucose
87
gm_csf_pg_ml
0.277111968
gramwt_g_usda
9704.5
hard_stools_new
2
hdl
70
heartburn_new
2
hispanic
No
host age
26
host body habitat
colon
host body mass index
25.5
host body product
feces
host common name
human
host height
182
host scientific name
Homo sapiens
host subject id
HIV289
host taxid
9606
host weight
84.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
309.2380809
ifabp_pg_ml
1273.55
il_10_pg_ml
235.1545057
il_12_23p40_pg_ml
102.7695005
il_15_pg_ml
3.362018501
il_16_pg_ml
133.5526149
il_17a_pg_ml
3.219001984
il_22_pg_ml
190.8984363
il_6_pg_ml
401.2410474
il_7_pg_ml
14.58488301
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
insulin
4
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
22.57
ivdu_12mo_new
Yes
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
4075.650118
ldl
62
leptin
6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
5253.92
lycopene_mcg_usda
5835.74
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
790.48
mcp_1_pg_ml
8289.030796
metab_disease_score_binary
LOW
metabolic_disease_score
0.725954729
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.6
mfa_18_1_octadecenoic_acid_g_usda
38.16
mfa_20_1_eicosenoic_acid_g_usda
0.35
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
38.23
mped_dairy_cheese_usda
0.49
mped_dairy_milk_usda
7.29
mped_dairy_total_usda
7.92
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
25.72
mped_discfat_sol_usda
50.85
mped_fruit_citmlb_usda
0.21
mped_fruit_other_usda
0.4
mped_fruit_total_usda
0.6
mped_grain_nwhl_usda
3.78
mped_grain_total_usda
4.44
mped_grain_whl_usda
0.66
mped_legumes_usda
0.39
mped_m_egg_usda
2.23
mped_m_fish_hi_usda
0.08
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
0.08
mped_m_meat_usda
2.44
mped_m_mpf_usda
3.82
mped_m_nutsd_usda
2.67
mped_m_organ_usda
0
mped_m_poult_usda
1.21
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.9
mped_vegetable_drkgr_usda
0.76
mped_vegetable_other_usda
0.7
mped_vegetable_potato_usda
0.13
mped_vegetable_starcy_usda
0.63
mped_vegetable_tomato_usda
0.52
mped_vegetable_total_usda
3.64
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
Yes
niacin_mg_usda
24.73
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
16.16
pfa_18_3_octadecatrienoic_acig_g_usda
1.54
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.24
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.07
phosphorus_mg_usda
3428.28
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
7406.43
probiotics_1wk
not collected
protein_g_usda
151.77
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
1284.3
riboflavin_vitamin_b2_mg_usda
5.57
saa_ng_ml
2024.667341
sample name
qiita_sid_13338:13338.St.neg.DM063.1
sample type
stool
scd14_pg_ml
1242003.271
scd163_ng_ml
539.2913382
selenium_mcg_usda
178.49
sfa_10_0_decanoic_acid_g_usda
0.57
sfa_12_0_dodecanoic_acid_g_usda
0.7
sfa_14_0_tetradecanoic_acid_g_usda
2.72
sfa_16_0_hexadecanoic_acid_g_usda
19.12
sfa_18_0_octadecanoic_acid_g_usda
9.57
sfa_4_0_butanoic_acid_g_usda
0.82
sfa_6_0_hexanoic_acid_g_usda
0.41
sfa_8_0_octanoic_acid_g_usda
0.27
sodium_mg_usda
4655.79
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.44
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
494.1680839
tnf_beta_pg_ml
0.282614802
total_fat_g_usda
102.19
total_folate_mcg_usda
696.77
total_monounsaturated_fatty_acids_g_usda
40.7
total_polyunsaturated_fatty_acids_g_usda
18.39
total_saturated_fatty_acids_g_usda
35.99
total_sugars_g_usda
290.19
triglycerides
86
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
510.2363319
vegf_pg_ml
58.05873944
vitamin_a_rae_mcg_usda
2731.31
vitamin_b12_mcg_usda
11.24
vitamin_b6_mg_usda
3.1
vitamin_c_mg_usda
161.2
vitamin_e_as_alpha_tocopherol_mg_usda
12.24
vitamin_k_mcg_usda
271.84
watery_diarrhea_24hr_new
NO
zinc_mg_usda
24.39