13338.St.chronic.GLD019.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617016
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD019.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
28.1
alcohol_g_usda
5.58
alpha_carotene_mcg_usda
199.38
art_years
24
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
1446.91
beta_cryptoxanthin_mcg_usda
89.7
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
579.54
calcium_mg_usda
1230.18
carbohydrate_g_usda
430.96
cd4_cd38_single_positive_cells
63
cd4_count
177
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
3
cd4_nadir
not collected
cd4_percent
19
cd8_cd38_single_positive_cells
26
cd8_count
503
cd8_hladr_cd38_percent
10
cd8_hladr_single_positive_cells
9
cd8_percent
54
cholesterol_drugs_1mo
No
cholesterol_mg_usda
279.84
cohort
HIV treated
collection_timestamp
2/18/15
constipation_24hr_new
NO
copper_mg_usda
2.02
crp_ng_ml
1594.714373
current_art
atripla
current_art_start_date
1/1/11
decreased_stools_new
1
dietary_fiber_g_usda
21.78
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3187.47
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
624.92
folic_acid_mcg_usda
206.96
food_folate_mcg_usda
272.91
gender
male
gi_summary_score
1.142857143
glucose
80
gm_csf_pg_ml
0.115984343
gramwt_g_usda
4972.87
hard_stools_new
2
hdl
55
heartburn_new
1
hispanic
No
host age
47
host body habitat
colon
host body mass index
23.1
host body product
feces
host common name
human
host height
186
host scientific name
Homo sapiens
host subject id
HIV054
host taxid
9606
host weight
80
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
217.4134542
ifabp_pg_ml
724.73
il_10_pg_ml
239.2773303
il_12_23p40_pg_ml
61.42576735
il_15_pg_ml
4.637331418
il_16_pg_ml
543.6905509
il_17a_pg_ml
1.62248992
il_22_pg_ml
338.7435479
il_6_pg_ml
251.3155885
il_7_pg_ml
15.04830443
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1991
insulin
3
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
17.44
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
10932.43243
ldl
110
leptin
2.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1324.91
lycopene_mcg_usda
12049.17
lymphocyte_count
931
lymphocyte_percent
17.9
magnesium_mg_usda
431.65
mcp_1_pg_ml
6306.480116
metab_disease_score_binary
LOW
metabolic_disease_score
0.678531642
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.49
mfa_18_1_octadecenoic_acid_g_usda
41.59
mfa_20_1_eicosenoic_acid_g_usda
0.46
mfa_22_1_docosenoic_acid_g_usda
0.08
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.42
mped_add_sug_usda
47.03
mped_dairy_cheese_usda
0.85
mped_dairy_milk_usda
1.57
mped_dairy_total_usda
2.43
mped_dairy_yogurt_usda
0.01
mped_discfat_oil_usda
33.29
mped_discfat_sol_usda
58.13
mped_fruit_citmlb_usda
0.43
mped_fruit_other_usda
0.69
mped_fruit_total_usda
1.12
mped_grain_nwhl_usda
7.81
mped_grain_total_usda
8.24
mped_grain_whl_usda
0.43
mped_legumes_usda
0.05
mped_m_egg_usda
0.28
mped_m_fish_hi_usda
0.71
mped_m_fish_lo_usda
0.57
mped_m_frank_usda
0.21
mped_m_meat_usda
1.83
mped_m_mpf_usda
4.52
mped_m_nutsd_usda
3.22
mped_m_organ_usda
0.01
mped_m_poult_usda
1.19
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.03
mped_vegetable_other_usda
1.7
mped_vegetable_potato_usda
0.16
mped_vegetable_starcy_usda
0.02
mped_vegetable_tomato_usda
0.62
mped_vegetable_total_usda
2.56
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
YES
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
28.88
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
21.56
pfa_18_3_octadecatrienoic_acig_g_usda
1.83
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.1
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.18
phosphorus_mg_usda
1858.35
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3930.37
probiotics_1wk
No
protein_g_usda
103.8
race
Black/African American
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
414.73
riboflavin_vitamin_b2_mg_usda
3.09
saa_ng_ml
2583.60139
sample name
qiita_sid_13338:13338.St.chronic.GLD019.T
sample type
stool
scd14_pg_ml
1378268.59
scd163_ng_ml
390.5836181
selenium_mcg_usda
146.25
sfa_10_0_decanoic_acid_g_usda
0.69
sfa_12_0_dodecanoic_acid_g_usda
2.77
sfa_14_0_tetradecanoic_acid_g_usda
3.43
sfa_16_0_hexadecanoic_acid_g_usda
19.23
sfa_18_0_octadecanoic_acid_g_usda
10.09
sfa_4_0_butanoic_acid_g_usda
0.76
sfa_6_0_hexanoic_acid_g_usda
0.36
sfa_8_0_octanoic_acid_g_usda
0.44
sodium_mg_usda
4305.08
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.92
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
696.364806
tnf_beta_pg_ml
0.124934134
total_fat_g_usda
119.42
total_folate_mcg_usda
479.52
total_monounsaturated_fatty_acids_g_usda
44.7
total_polyunsaturated_fatty_acids_g_usda
24.17
total_saturated_fatty_acids_g_usda
39.08
total_sugars_g_usda
247.45
triglycerides
78
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
282.3870872
vegf_pg_ml
251.0199255
viral load
20
vitamin_a_rae_mcg_usda
546.99
vitamin_b12_mcg_usda
6.61
vitamin_b6_mg_usda
2.05
vitamin_c_mg_usda
108.31
vitamin_e_as_alpha_tocopherol_mg_usda
11.14
vitamin_k_mcg_usda
110.1
watery_diarrhea_24hr_new
NO
zinc_mg_usda
14.06