13338.St.neg.GLD138
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617111
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:22Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD138
abdominal_distension_new
not collected
abdominal_pain_24hr_new
NO
abdominal_pains_new
not collected
abx_non_exclusion
not collected
acid_regurgitation_new
not collected
adiponectin
11.2
alcohol_g_usda
8.69
alpha_carotene_mcg_usda
334.3
beta_carotene_mcg_usda
1449.13
beta_cryptoxanthin_mcg_usda
76.27
bloating_24hr_new
NO
borborygmus_new
not collected
bristol_stool_scale_sample
not collected
caffeine_mg_usda
1603.39
calcium_mg_usda
3048.49
carbohydrate_g_usda
607.98
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
990.12
cohort
HIV negative MSM
collection_timestamp
10/19/16
constipation_24hr_new
NO
copper_mg_usda
1.71
crp_ng_ml
3326.262023
decreased_stools_new
not collected
dietary_fiber_g_usda
12.87
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
4664.47
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
not collected
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
995.53
folic_acid_mcg_usda
378.42
food_folate_mcg_usda
352.93
gender
male
gi_summary_score
not collected
glucose
92
gm_csf_pg_ml
0.341899594
gramwt_g_usda
11127.32
hard_stools_new
not collected
hdl
45
heartburn_new
not collected
hispanic
No
host age
28
host body habitat
colon
host body mass index
25.4
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV250
host taxid
9606
host weight
75.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
589.9231828
ifabp_pg_ml
2183.183
il_10_pg_ml
714.6693789
il_12_23p40_pg_ml
154.803377
il_15_pg_ml
5.316839583
il_16_pg_ml
473.4246888
il_17a_pg_ml
23.5837416
il_22_pg_ml
256.5727881
il_6_pg_ml
511.750699
il_7_pg_ml
11.43454125
incomplete_evacuation_new
not collected
increased_flatus_new
not collected
increased_stools_new
not collected
insulin
5
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
22.19
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11888.88889
ldl
88
leptin
13.7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
not collected
lutein_zeaxanthin_mcg_usda
1317.35
lycopene_mcg_usda
6515.46
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
566.46
mcp_1_pg_ml
8114.037307
metab_disease_score_binary
LOW
metabolic_disease_score
1.071034322
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.72
mfa_18_1_octadecenoic_acid_g_usda
55.66
mfa_20_1_eicosenoic_acid_g_usda
0.34
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.62
mped_add_sug_usda
87.29
mped_dairy_cheese_usda
0.72
mped_dairy_milk_usda
7.98
mped_dairy_total_usda
8.7
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
38.16
mped_discfat_sol_usda
118.82
mped_fruit_citmlb_usda
0.14
mped_fruit_other_usda
0.24
mped_fruit_total_usda
0.38
mped_grain_nwhl_usda
5.69
mped_grain_total_usda
6.51
mped_grain_whl_usda
0.82
mped_legumes_usda
0.02
mped_m_egg_usda
3.09
mped_m_fish_hi_usda
0.04
mped_m_fish_lo_usda
0.07
mped_m_frank_usda
1.13
mped_m_meat_usda
1.13
mped_m_mpf_usda
2.73
mped_m_nutsd_usda
1.13
mped_m_organ_usda
0.01
mped_m_poult_usda
0.34
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
0.05
mped_vegetable_other_usda
0.29
mped_vegetable_potato_usda
0.24
mped_vegetable_starcy_usda
0.09
mped_vegetable_tomato_usda
0.33
mped_vegetable_total_usda
1.07
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
not collected
new_sti_12mo_new
No
niacin_mg_usda
56.94
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
27.19
pfa_18_3_octadecatrienoic_acig_g_usda
4.06
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.29
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.08
phosphorus_mg_usda
3156.8
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
6320.82
probiotics_1wk
not collected
protein_g_usda
144.05
race
Other
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1330.14
riboflavin_vitamin_b2_mg_usda
10.04
saa_ng_ml
3854.324041
sample name
qiita_sid_13338:13338.St.neg.GLD138
sample type
stool
scd14_pg_ml
1608080.111
scd163_ng_ml
700.5500227
selenium_mcg_usda
214.41
sfa_10_0_decanoic_acid_g_usda
1.95
sfa_12_0_dodecanoic_acid_g_usda
2.39
sfa_14_0_tetradecanoic_acid_g_usda
8.29
sfa_16_0_hexadecanoic_acid_g_usda
35.86
sfa_18_0_octadecanoic_acid_g_usda
15.68
sfa_4_0_butanoic_acid_g_usda
2.12
sfa_6_0_hexanoic_acid_g_usda
1.76
sfa_8_0_octanoic_acid_g_usda
1.69
sodium_mg_usda
5540.42
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.17
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
657.2080054
tnf_beta_pg_ml
0.331157758
total_fat_g_usda
187.77
total_folate_mcg_usda
730.7
total_monounsaturated_fatty_acids_g_usda
58.53
total_polyunsaturated_fatty_acids_g_usda
32.08
total_saturated_fatty_acids_g_usda
70.89
total_sugars_g_usda
478.7
triglycerides
60
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
not collected
vcam_1_ng_ml
469.1490674
vegf_pg_ml
67.369126
vitamin_a_rae_mcg_usda
1462.67
vitamin_b12_mcg_usda
20.24
vitamin_b6_mg_usda
5.38
vitamin_c_mg_usda
44.93
vitamin_e_as_alpha_tocopherol_mg_usda
12.44
vitamin_k_mcg_usda
100.06
watery_diarrhea_24hr_new
NO
zinc_mg_usda
21.09