Metagenome-assembled genome: SRR15057930_bin.32_metaWRAP_v1.3_MAG
ENA-FIRST-PUBLIC
2022-07-26
ENA-LAST-UPDATE
2022-07-26
External Id
SAMEA110414607
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-07-26T00:34:24Z
INSDC last update
2022-07-26T00:34:24Z
INSDC status
public
Submitter Id
SRR15057930_bin.32_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Pig digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2015-01-01
completeness score
57.21
completeness software
CheckM
contamination score
4.31
environmental medium
Feces
geographic location (country and/or sea)
France
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
pig gut metagenome
local environmental context
Intestine
metagenomic source
pig gut metagenome
project name
The question of the presence of phage encoded antibiotic-resistance genes was revisited here by sampling 14 pig fecal samples in various farms, and performing shotgun, deep sequencing on both total microbiota and highly purified viral fractions. The virome assemblies were sufficiently comprehensive to allow in addition the discovery of two new and prevailing viral taxa.
sample derived from
SAMN20056609
sample name
SRR15057930_bin.32_metaWRAP_v1.3_MAG
sequencing method
Illumina HiSeq 3000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__
taxonomic identity marker
multi-marker approach