13338.St.neg.GLD013
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617079
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD013
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.2
alcohol_g_usda
2.49
alpha_carotene_mcg_usda
483.98
beta_carotene_mcg_usda
2822.45
beta_cryptoxanthin_mcg_usda
237.78
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
33.51
calcium_mg_usda
1651.27
carbohydrate_g_usda
397.48
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
587.72
cohort
HIV negative MSM
collection_timestamp
1/23/15
constipation_24hr_new
NO
copper_mg_usda
2.21
crp_ng_ml
250.1429382
decreased_stools_new
1
dietary_fiber_g_usda
28.07
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3561.54
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
870.21
folic_acid_mcg_usda
315.09
food_folate_mcg_usda
334.9
gender
male
gi_summary_score
1.571428571
glucose
85
gm_csf_pg_ml
0.253024242
gramwt_g_usda
3707.78
hard_stools_new
1
hdl
48
heartburn_new
1
hispanic
Yes
host age
33
host body habitat
colon
host body mass index
29
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV148
host taxid
9606
host weight
86.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
377.5888796
ifabp_pg_ml
2623.298
il_10_pg_ml
270.1026809
il_12_23p40_pg_ml
244.3067561
il_15_pg_ml
3.845897086
il_16_pg_ml
252.3307576
il_17a_pg_ml
2.667684806
il_22_pg_ml
116.649296
il_6_pg_ml
418.3247435
il_7_pg_ml
8.657848069
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
3
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
28.12
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
7604.72973
ldl
80
leptin
6.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2493.3
lycopene_mcg_usda
14410.93
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
451.18
mcp_1_pg_ml
9436.424527
metab_disease_score_binary
LOW
metabolic_disease_score
1.025210211
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.52
mfa_18_1_octadecenoic_acid_g_usda
57.18
mfa_20_1_eicosenoic_acid_g_usda
0.51
mfa_22_1_docosenoic_acid_g_usda
0.08
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.19
mped_add_sug_usda
24.74
mped_dairy_cheese_usda
1.19
mped_dairy_milk_usda
0.67
mped_dairy_total_usda
1.97
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
36.87
mped_discfat_sol_usda
89.55
mped_fruit_citmlb_usda
0.66
mped_fruit_other_usda
0.9
mped_fruit_total_usda
1.56
mped_grain_nwhl_usda
10.73
mped_grain_total_usda
11.8
mped_grain_whl_usda
1.06
mped_legumes_usda
0.38
mped_m_egg_usda
1.11
mped_m_fish_hi_usda
0.43
mped_m_fish_lo_usda
1.51
mped_m_frank_usda
0.17
mped_m_meat_usda
5.33
mped_m_mpf_usda
8.7
mped_m_nutsd_usda
1.49
mped_m_organ_usda
0.01
mped_m_poult_usda
1.26
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.09
mped_vegetable_drkgr_usda
0.19
mped_vegetable_other_usda
0.84
mped_vegetable_potato_usda
0.72
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.76
mped_vegetable_total_usda
2.64
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
38.49
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
27.75
pfa_18_3_octadecatrienoic_acig_g_usda
2.78
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.26
pfa_20_5_eicosapentaenoic_acid_g_usda
0.12
pfa_22_5_docosapentaenoic_acid_g_usda
0.04
pfa_22_6_docosahexaenoic_acid_g_usda
0.21
phosphorus_mg_usda
2140.98
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4267.21
probiotics_1wk
No
protein_g_usda
145.36
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
673.61
riboflavin_vitamin_b2_mg_usda
3.11
saa_ng_ml
1284.568754
sample name
qiita_sid_13338:13338.St.neg.GLD013
sample type
stool
scd14_pg_ml
1210731.889
scd163_ng_ml
1209.389512
selenium_mcg_usda
202.32
sfa_10_0_decanoic_acid_g_usda
0.77
sfa_12_0_dodecanoic_acid_g_usda
1.19
sfa_14_0_tetradecanoic_acid_g_usda
4.2
sfa_16_0_hexadecanoic_acid_g_usda
27.83
sfa_18_0_octadecanoic_acid_g_usda
13.31
sfa_4_0_butanoic_acid_g_usda
1.06
sfa_6_0_hexanoic_acid_g_usda
0.52
sfa_8_0_octanoic_acid_g_usda
0.39
sodium_mg_usda
6153.03
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.66
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
664.1644991
tnf_beta_pg_ml
0.201752984
total_fat_g_usda
156.79
total_folate_mcg_usda
650.13
total_monounsaturated_fatty_acids_g_usda
61.22
total_polyunsaturated_fatty_acids_g_usda
31.78
total_saturated_fatty_acids_g_usda
50.92
total_sugars_g_usda
157.28
triglycerides
62
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
429.0332193
vegf_pg_ml
149.193512
vitamin_a_rae_mcg_usda
939.06
vitamin_b12_mcg_usda
9.92
vitamin_b6_mg_usda
3.11
vitamin_c_mg_usda
171.75
vitamin_e_as_alpha_tocopherol_mg_usda
15.03
vitamin_k_mcg_usda
158.16
watery_diarrhea_24hr_new
NO
zinc_mg_usda
23.61