13338.St.neg.GLD074
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617092
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:20Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD074
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.2
alcohol_g_usda
8.74
alpha_carotene_mcg_usda
558.12
beta_carotene_mcg_usda
2357.33
beta_cryptoxanthin_mcg_usda
1077.5
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
41.64
calcium_mg_usda
2995.07
carbohydrate_g_usda
492.24
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
372.89
cohort
HIV negative MSW
collection_timestamp
1/28/16
constipation_24hr_new
NO
copper_mg_usda
2.18
crp_ng_ml
2024.321292
decreased_stools_new
1
dietary_fiber_g_usda
21.01
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3148.63
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
978.97
folic_acid_mcg_usda
326.43
food_folate_mcg_usda
423.78
gender
male
gi_summary_score
1.285714286
glucose
98
gm_csf_pg_ml
0.220021428
gramwt_g_usda
6698.9
hard_stools_new
1
hdl
38
heartburn_new
2
hispanic
Yes
host age
28
host body habitat
colon
host body mass index
29.4
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV113
host taxid
9606
host weight
87.3
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
354.9922929
ifabp_pg_ml
2113.519
il_10_pg_ml
217.8578401
il_12_23p40_pg_ml
95.92923831
il_15_pg_ml
3.473266799
il_16_pg_ml
1934.440539
il_17a_pg_ml
2.131371481
il_22_pg_ml
224.7141622
il_6_pg_ml
324.5644497
il_7_pg_ml
14.03752881
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
3
insulin
9
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
24.91
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10231.41892
ldl
123
leptin
8.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2077.69
lycopene_mcg_usda
7103.01
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
495.97
mcp_1_pg_ml
8929.187657
metab_disease_score_binary
HIGH
metabolic_disease_score
1.444237414
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.44
mfa_18_1_octadecenoic_acid_g_usda
27.26
mfa_20_1_eicosenoic_acid_g_usda
0.15
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.67
mped_add_sug_usda
37.43
mped_dairy_cheese_usda
0.9
mped_dairy_milk_usda
4.55
mped_dairy_total_usda
5.49
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
16.36
mped_discfat_sol_usda
56.4
mped_fruit_citmlb_usda
3.23
mped_fruit_other_usda
3.49
mped_fruit_total_usda
6.72
mped_grain_nwhl_usda
3.45
mped_grain_total_usda
3.99
mped_grain_whl_usda
0.54
mped_legumes_usda
0.2
mped_m_egg_usda
0.93
mped_m_fish_hi_usda
0.05
mped_m_fish_lo_usda
0.15
mped_m_frank_usda
0.19
mped_m_meat_usda
1.39
mped_m_mpf_usda
2.39
mped_m_nutsd_usda
0.11
mped_m_organ_usda
0.06
mped_m_poult_usda
0.56
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.08
mped_vegetable_drkgr_usda
0.17
mped_vegetable_other_usda
0.42
mped_vegetable_potato_usda
0.17
mped_vegetable_starcy_usda
0.1
mped_vegetable_tomato_usda
0.4
mped_vegetable_total_usda
1.35
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
28.96
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
12.49
pfa_18_3_octadecatrienoic_acig_g_usda
1.43
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.11
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
2142.22
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
5716.44
probiotics_1wk
No
protein_g_usda
99.6
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
1371.1
riboflavin_vitamin_b2_mg_usda
4.5
saa_ng_ml
1845.980296
sample name
qiita_sid_13338:13338.St.neg.GLD074
sample type
stool
scd14_pg_ml
1456452.383
scd163_ng_ml
718.1059759
selenium_mcg_usda
99.29
sfa_10_0_decanoic_acid_g_usda
0.96
sfa_12_0_dodecanoic_acid_g_usda
1.2
sfa_14_0_tetradecanoic_acid_g_usda
4.07
sfa_16_0_hexadecanoic_acid_g_usda
18.36
sfa_18_0_octadecanoic_acid_g_usda
7.92
sfa_4_0_butanoic_acid_g_usda
1.4
sfa_6_0_hexanoic_acid_g_usda
0.74
sfa_8_0_octanoic_acid_g_usda
0.45
sodium_mg_usda
3268.43
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.58
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
636.2328164
tnf_beta_pg_ml
0.241844875
total_fat_g_usda
86.91
total_folate_mcg_usda
750.35
total_monounsaturated_fatty_acids_g_usda
29.54
total_polyunsaturated_fatty_acids_g_usda
14.21
total_saturated_fatty_acids_g_usda
36.19
total_sugars_g_usda
339.3
triglycerides
132
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
398.6582631
vegf_pg_ml
128.3929938
vitamin_a_rae_mcg_usda
1635.77
vitamin_b12_mcg_usda
12.5
vitamin_b6_mg_usda
4.08
vitamin_c_mg_usda
462.31
vitamin_e_as_alpha_tocopherol_mg_usda
10.5
vitamin_k_mcg_usda
107.86
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.88