13338.St.chronic.GLD166.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617059
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD166.T
abdominal_distension_new
3
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
Yes
abx_non_exclusion_type
levaquin
acid_regurgitation_new
1
adiponectin
3.6
alcohol_g_usda
28.01
alpha_carotene_mcg_usda
210.96
art_years
23
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2678.92
beta_cryptoxanthin_mcg_usda
135.53
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
7
caffeine_mg_usda
318.89
calcium_mg_usda
956.19
carbohydrate_g_usda
229.16
cd4_cd38_single_positive_cells
33
cd4_count
557
cd4_hladr_cd38_percent
8
cd4_hladr_single_positive_cells
8
cd4_nadir
450
cd4_percent
31
cd8_cd38_single_positive_cells
5
cd8_count
1025
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
26
cd8_percent
57
cholesterol_drugs_1mo
No
cholesterol_mg_usda
294.48
cohort
HIV treated LD
collection_timestamp
11/8/17
constipation_24hr_new
NO
copper_mg_usda
2.86
crp_ng_ml
11387.69613
current_art
bictegravir/p, DTG/p, discovy/p
current_art_start_date
10/11/17
decreased_stools_new
1
dietary_fiber_g_usda
27.83
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2475.2
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
906.28
folic_acid_mcg_usda
250.7
food_folate_mcg_usda
480.08
gender
male
gi_summary_score
1.928571429
glucose
80
gm_csf_pg_ml
0.225123364
gramwt_g_usda
4715.9
hard_stools_new
1
hdl
44
heartburn_new
2
hispanic
No
host age
59
host body habitat
colon
host body mass index
29.3
host body product
feces
host common name
human
host height
183
host scientific name
Homo sapiens
host subject id
HIV291
host taxid
9606
host weight
98
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
621.0083891
ifabp_pg_ml
1724.162
il_10_pg_ml
279.9154869
il_12_23p40_pg_ml
229.8427945
il_15_pg_ml
4.850447079
il_16_pg_ml
532.2340815
il_17a_pg_ml
4.783920641
il_22_pg_ml
1274.166178
il_6_pg_ml
462.3276421
il_7_pg_ml
14.2292153
incomplete_evacuation_new
2
increased_flatus_new
3
increased_stools_new
2
initial_art_start_date
1994
insulin
4
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
23.42
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10885.33835
ldl
54
leptin
5.7
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
3785.92
lycopene_mcg_usda
4206.41
lymphocyte_count
1798
lymphocyte_percent
29
magnesium_mg_usda
594.2
mcp_1_pg_ml
11184.36158
metab_disease_score_binary
LOW
metabolic_disease_score
1.284497239
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.08
mfa_18_1_octadecenoic_acid_g_usda
50.36
mfa_20_1_eicosenoic_acid_g_usda
0.65
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
2.14
mped_add_sug_usda
8.55
mped_dairy_cheese_usda
0.31
mped_dairy_milk_usda
0.84
mped_dairy_total_usda
1.36
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
61.99
mped_discfat_sol_usda
18.7
mped_fruit_citmlb_usda
0.7
mped_fruit_other_usda
0.63
mped_fruit_total_usda
1.33
mped_grain_nwhl_usda
2.64
mped_grain_total_usda
4.03
mped_grain_whl_usda
1.39
mped_legumes_usda
0.08
mped_m_egg_usda
0.91
mped_m_fish_hi_usda
0.1
mped_m_fish_lo_usda
0.06
mped_m_frank_usda
4.09
mped_m_meat_usda
0.42
mped_m_mpf_usda
4.75
mped_m_nutsd_usda
9.82
mped_m_organ_usda
0
mped_m_poult_usda
0.07
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.51
mped_vegetable_other_usda
1.28
mped_vegetable_potato_usda
0.18
mped_vegetable_starcy_usda
0.03
mped_vegetable_tomato_usda
0.16
mped_vegetable_total_usda
2.19
nadir_date
1/1/14
nadir_report
Patient report
nadir_years
3.85
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
35.05
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
32.29
pfa_18_3_octadecatrienoic_acig_g_usda
1.72
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1859.86
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3932.8
probiotics_1wk
Not sure
protein_g_usda
95.33
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
553.04
riboflavin_vitamin_b2_mg_usda
2.96
saa_ng_ml
12075.46595
sample name
qiita_sid_13338:13338.St.chronic.GLD166.T
sample type
stool
scd14_pg_ml
1708522.613
scd163_ng_ml
1006.753553
selenium_mcg_usda
130
sfa_10_0_decanoic_acid_g_usda
0.19
sfa_12_0_dodecanoic_acid_g_usda
0.38
sfa_14_0_tetradecanoic_acid_g_usda
0.99
sfa_16_0_hexadecanoic_acid_g_usda
14.83
sfa_18_0_octadecanoic_acid_g_usda
5.84
sfa_4_0_butanoic_acid_g_usda
0.22
sfa_6_0_hexanoic_acid_g_usda
0.1
sfa_8_0_octanoic_acid_g_usda
0.11
sodium_mg_usda
4137.54
statin_type
crestor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
2.11
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
778.8108026
tnf_beta_pg_ml
0.217595287
total_fat_g_usda
119.35
total_folate_mcg_usda
730.84
total_monounsaturated_fatty_acids_g_usda
52.33
total_polyunsaturated_fatty_acids_g_usda
34.41
total_saturated_fatty_acids_g_usda
24.23
total_sugars_g_usda
86.56
triglycerides
169
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
821.8501904
vegf_pg_ml
81.6402453
viral load
0
vitamin_a_rae_mcg_usda
791.92
vitamin_b12_mcg_usda
5.58
vitamin_b6_mg_usda
3.07
vitamin_c_mg_usda
113.87
vitamin_e_as_alpha_tocopherol_mg_usda
17.1
vitamin_k_mcg_usda
226.74
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.46