Thaumarchaeota archaeon
ENA first public
2022-04-13
ENA last update
2022-04-13
External Id
SAMEA14081589
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-04-13T16:18:34Z
INSDC last update
2022-04-13T16:18:34Z
INSDC status
public
Submitter Id
ZH-3nov15-208
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2015-11-03
completeness score
100
completeness software
checkm
contamination score
0
environment (biome)
freshwater lake
environment (feature)
large lake
environment (material)
fresh water
geographic location (country and/or sea)
Switzerland
geographic location (latitude)
47.300659
geographic location (longitude)
8.578777
investigation type
metagenome-assembled genome
isolation source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJNA428721
sample derived from
SAMN08297413
sample name
ZH-3nov15-208
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach