13338.St.neg.GLD089
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617096
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:20Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD089
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.1
alcohol_g_usda
11.92
alpha_carotene_mcg_usda
854.49
beta_carotene_mcg_usda
10610.43
beta_cryptoxanthin_mcg_usda
287.62
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
2
caffeine_mg_usda
723.92
calcium_mg_usda
1365.31
carbohydrate_g_usda
349.43
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
453.04
cohort
HIV negative MSW
collection_timestamp
4/6/16
constipation_24hr_new
NO
copper_mg_usda
2.52
crp_ng_ml
795.129355
decreased_stools_new
1
dietary_fiber_g_usda
33.95
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2955.01
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
891.95
folic_acid_mcg_usda
237.05
food_folate_mcg_usda
489.01
gender
male
gi_summary_score
1
glucose
93
gm_csf_pg_ml
0.222397777
gramwt_g_usda
6523.35
hard_stools_new
1
hdl
54
heartburn_new
1
hispanic
No
host age
30
host body habitat
colon
host body mass index
26.4
host body product
feces
host common name
human
host height
186
host scientific name
Homo sapiens
host subject id
HIV190
host taxid
9606
host weight
91.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
386.0825875
ifabp_pg_ml
861.993
il_10_pg_ml
318.3669972
il_12_23p40_pg_ml
146.7039926
il_15_pg_ml
2.470422071
il_16_pg_ml
395.1661132
il_17a_pg_ml
11.36575651
il_22_pg_ml
189.0032085
il_6_pg_ml
258.102513
il_7_pg_ml
12.66970224
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
6
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
25.38
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
4832.706767
ldl
111
leptin
17.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
5945.49
lycopene_mcg_usda
11331.9
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
584.85
mcp_1_pg_ml
8582.17345
metab_disease_score_binary
LOW
metabolic_disease_score
1.136930928
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.79
mfa_18_1_octadecenoic_acid_g_usda
42.9
mfa_20_1_eicosenoic_acid_g_usda
0.42
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.92
mped_add_sug_usda
15.75
mped_dairy_cheese_usda
1.08
mped_dairy_milk_usda
0.5
mped_dairy_total_usda
1.94
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
30.79
mped_discfat_sol_usda
60.08
mped_fruit_citmlb_usda
1.3
mped_fruit_other_usda
1.4
mped_fruit_total_usda
2.7
mped_grain_nwhl_usda
6.64
mped_grain_total_usda
7.84
mped_grain_whl_usda
1.21
mped_legumes_usda
0.46
mped_m_egg_usda
1.03
mped_m_fish_hi_usda
0.37
mped_m_fish_lo_usda
0.77
mped_m_frank_usda
0.45
mped_m_meat_usda
2.56
mped_m_mpf_usda
5.31
mped_m_nutsd_usda
2.81
mped_m_organ_usda
0.01
mped_m_poult_usda
1.16
mped_m_soy_usda
0.1
mped_vegetable_dpyel_usda
0.42
mped_vegetable_drkgr_usda
0.57
mped_vegetable_other_usda
0.74
mped_vegetable_potato_usda
0.28
mped_vegetable_starcy_usda
0.16
mped_vegetable_tomato_usda
0.45
mped_vegetable_total_usda
2.62
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
38.51
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
19.96
pfa_18_3_octadecatrienoic_acig_g_usda
1.94
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.14
phosphorus_mg_usda
2034.14
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
5206.67
probiotics_1wk
Yes
protein_g_usda
118.16
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
609.97
riboflavin_vitamin_b2_mg_usda
4.1
saa_ng_ml
1305.447103
sample name
qiita_sid_13338:13338.St.neg.GLD089
sample type
stool
scd14_pg_ml
1365575.529
scd163_ng_ml
359.4155679
selenium_mcg_usda
153.7
sfa_10_0_decanoic_acid_g_usda
0.72
sfa_12_0_dodecanoic_acid_g_usda
1.36
sfa_14_0_tetradecanoic_acid_g_usda
3.54
sfa_16_0_hexadecanoic_acid_g_usda
20.57
sfa_18_0_octadecanoic_acid_g_usda
9.3
sfa_4_0_butanoic_acid_g_usda
0.91
sfa_6_0_hexanoic_acid_g_usda
0.5
sfa_8_0_octanoic_acid_g_usda
0.43
sodium_mg_usda
4571.8
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.47
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
633.3022195
tnf_beta_pg_ml
0.596472818
total_fat_g_usda
120.21
total_folate_mcg_usda
726.87
total_monounsaturated_fatty_acids_g_usda
46.11
total_polyunsaturated_fatty_acids_g_usda
22.72
total_saturated_fatty_acids_g_usda
38.9
total_sugars_g_usda
142.3
triglycerides
92
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
500.2605153
vegf_pg_ml
80.60005386
vitamin_a_rae_mcg_usda
1541.61
vitamin_b12_mcg_usda
7.2
vitamin_b6_mg_usda
3.31
vitamin_c_mg_usda
164.46
vitamin_e_as_alpha_tocopherol_mg_usda
13.51
vitamin_k_mcg_usda
301.3
watery_diarrhea_24hr_new
NO
zinc_mg_usda
19.43