13338.St.chronic.DM040.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617009
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM040.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3.6
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
2198.74
art_years
28
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
10750.3
beta_cryptoxanthin_mcg_usda
262.1
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
9.63
calcium_mg_usda
1648.31
carbohydrate_g_usda
412.15
cd4_cd38_single_positive_cells
71
cd4_count
900
cd4_hladr_cd38_percent
6
cd4_hladr_single_positive_cells
1
cd4_nadir
140
cd4_percent
37
cd8_cd38_single_positive_cells
33
cd8_count
1006
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
2
cd8_percent
38
cholesterol_drugs_1mo
No
cholesterol_mg_usda
239.75
cohort
HIV treated LD
collection_timestamp
5/3/17
constipation_24hr_new
NO
copper_mg_usda
3.09
crp_ng_ml
3807.741967
current_art
DRV, RTV, Epzicom
current_art_start_date
1/1/12
decreased_stools_new
1
dietary_fiber_g_usda
54.04
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3091.25
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1155.59
folic_acid_mcg_usda
364.99
food_folate_mcg_usda
534.89
gender
male
gi_summary_score
1.214285714
glucose
129
gm_csf_pg_ml
0.255725348
gramwt_g_usda
5583.2
hard_stools_new
1
hdl
30
heartburn_new
1
hispanic
No
host age
60
host body habitat
colon
host body mass index
28.5
host body product
feces
host common name
human
host height
192
host scientific name
Homo sapiens
host subject id
HIV164
host taxid
9606
host weight
105
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
442.1913612
ifabp_pg_ml
1476.239
il_10_pg_ml
337.6630152
il_12_23p40_pg_ml
480.1165242
il_15_pg_ml
4.551285284
il_16_pg_ml
439.0663221
il_17a_pg_ml
2.557438179
il_22_pg_ml
431.8721856
il_6_pg_ml
483.3185595
il_7_pg_ml
8.659450525
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
1989
insulin
28
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
28.81
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
12652.25564
ldl
84
leptin
23.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
7179.32
lycopene_mcg_usda
8838.1
lymphocyte_count
2648.3
lymphocyte_percent
37.3
magnesium_mg_usda
678.29
mcp_1_pg_ml
12262.23401
metab_disease_score_binary
HIGH
metabolic_disease_score
1.788052624
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.73
mfa_18_1_octadecenoic_acid_g_usda
49.09
mfa_20_1_eicosenoic_acid_g_usda
0.47
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
18.38
mped_dairy_cheese_usda
1.35
mped_dairy_milk_usda
0.98
mped_dairy_total_usda
2.87
mped_dairy_yogurt_usda
0.53
mped_discfat_oil_usda
46.89
mped_discfat_sol_usda
50.8
mped_fruit_citmlb_usda
1.56
mped_fruit_other_usda
3.24
mped_fruit_total_usda
4.8
mped_grain_nwhl_usda
5.69
mped_grain_total_usda
7.65
mped_grain_whl_usda
1.94
mped_legumes_usda
0.5
mped_m_egg_usda
0.33
mped_m_fish_hi_usda
0.37
mped_m_fish_lo_usda
0.72
mped_m_frank_usda
0.36
mped_m_meat_usda
1.25
mped_m_mpf_usda
3.05
mped_m_nutsd_usda
4.4
mped_m_organ_usda
0.02
mped_m_poult_usda
0.33
mped_m_soy_usda
0.3
mped_vegetable_dpyel_usda
0.52
mped_vegetable_drkgr_usda
0.5
mped_vegetable_other_usda
1.63
mped_vegetable_potato_usda
0.29
mped_vegetable_starcy_usda
0.17
mped_vegetable_tomato_usda
0.43
mped_vegetable_total_usda
3.53
nadir_date
6/1/94
nadir_report
not collected
nadir_years
22.92
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
33.14
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
23.02
pfa_18_3_octadecatrienoic_acig_g_usda
2.17
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0.06
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.12
phosphorus_mg_usda
2273.04
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
5450.67
probiotics_1wk
not collected
protein_g_usda
115.25
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
567.39
riboflavin_vitamin_b2_mg_usda
3.37
saa_ng_ml
2416.746156
sample name
qiita_sid_13338:13338.St.chronic.DM040.1.T
sample type
stool
scd14_pg_ml
2186908.945
scd163_ng_ml
497.8523056
selenium_mcg_usda
150.24
sfa_10_0_decanoic_acid_g_usda
0.71
sfa_12_0_dodecanoic_acid_g_usda
1.15
sfa_14_0_tetradecanoic_acid_g_usda
3.39
sfa_16_0_hexadecanoic_acid_g_usda
20.42
sfa_18_0_octadecanoic_acid_g_usda
8.83
sfa_4_0_butanoic_acid_g_usda
0.99
sfa_6_0_hexanoic_acid_g_usda
0.49
sfa_8_0_octanoic_acid_g_usda
0.38
sodium_mg_usda
4757.44
statin_type
pitivastatin / placebo
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
2.63
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
814.0773561
tnf_beta_pg_ml
0.310069234
total_fat_g_usda
124.93
total_folate_mcg_usda
899.91
total_monounsaturated_fatty_acids_g_usda
52.37
total_polyunsaturated_fatty_acids_g_usda
25.86
total_saturated_fatty_acids_g_usda
37.98
total_sugars_g_usda
194.43
triglycerides
183
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
751.0601326
vegf_pg_ml
66.84479805
viral load
0
vitamin_a_rae_mcg_usda
1565.57
vitamin_b12_mcg_usda
9.02
vitamin_b6_mg_usda
4.12
vitamin_c_mg_usda
217.01
vitamin_e_as_alpha_tocopherol_mg_usda
16.63
vitamin_k_mcg_usda
386.26
watery_diarrhea_24hr_new
NO
zinc_mg_usda
21.54