13338.St.chronic.GLD104.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617041
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD104.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
3.4
alcohol_g_usda
5.87
alpha_carotene_mcg_usda
119.89
art_years
18
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
992.65
beta_cryptoxanthin_mcg_usda
47.71
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
336.73
calcium_mg_usda
476.98
carbohydrate_g_usda
104.13
cd4_cd38_single_positive_cells
68
cd4_count
1237
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
0
cd4_nadir
1120
cd4_percent
52
cd8_cd38_single_positive_cells
44
cd8_count
666
cd8_hladr_cd38_percent
4
cd8_hladr_single_positive_cells
0
cd8_percent
28
cholesterol_drugs_1mo
No
cholesterol_mg_usda
121
cohort
HIV treated LD
collection_timestamp
4/12/16
constipation_24hr_new
YES
copper_mg_usda
0.7
crp_ng_ml
3152.600058
current_art
trizivir
current_art_start_date
1/1/03
decreased_stools_new
2
dietary_fiber_g_usda
6.21
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
996.08
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
302.62
folic_acid_mcg_usda
114
food_folate_mcg_usda
108.81
gender
male
gi_summary_score
1.571428571
glucose
121
gm_csf_pg_ml
0.461927296
gramwt_g_usda
4084.66
hard_stools_new
2
hdl
38
heartburn_new
1
hispanic
No
host age
62
host body habitat
colon
host body mass index
26.6
host body product
feces
host common name
human
host height
167
host scientific name
Homo sapiens
host subject id
HIV201
host taxid
9606
host weight
74.3
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
427.2670351
ifabp_pg_ml
2156.795
il_10_pg_ml
365.3445745
il_12_23p40_pg_ml
320.2920548
il_15_pg_ml
4.715119449
il_16_pg_ml
378.1679788
il_17a_pg_ml
3.355127809
il_22_pg_ml
565.9883919
il_6_pg_ml
310.4419178
il_7_pg_ml
4.301188203
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1998
insulin
13
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
9.46
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
17704.49173
ldl
91
leptin
4.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
547.53
lycopene_mcg_usda
2204.8
lymphocyte_count
2378.8
lymphocyte_percent
31.3
magnesium_mg_usda
156.7
mcp_1_pg_ml
8534.616563
metab_disease_score_binary
HIGH
metabolic_disease_score
1.500130931
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.73
mfa_18_1_octadecenoic_acid_g_usda
15.75
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.07
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.41
mped_add_sug_usda
3.96
mped_dairy_cheese_usda
0.2
mped_dairy_milk_usda
0.43
mped_dairy_total_usda
0.64
mped_dairy_yogurt_usda
0.01
mped_discfat_oil_usda
12.31
mped_discfat_sol_usda
23.44
mped_fruit_citmlb_usda
0.2
mped_fruit_other_usda
0.13
mped_fruit_total_usda
0.33
mped_grain_nwhl_usda
3.3
mped_grain_total_usda
3.52
mped_grain_whl_usda
0.22
mped_legumes_usda
0.03
mped_m_egg_usda
0.09
mped_m_fish_hi_usda
0.63
mped_m_fish_lo_usda
0.2
mped_m_frank_usda
0.21
mped_m_meat_usda
1.07
mped_m_mpf_usda
2.51
mped_m_nutsd_usda
0.11
mped_m_organ_usda
0.01
mped_m_poult_usda
0.39
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.03
mped_vegetable_other_usda
0.26
mped_vegetable_potato_usda
0.17
mped_vegetable_starcy_usda
0.15
mped_vegetable_tomato_usda
0.2
mped_vegetable_total_usda
0.83
nadir_date
6/15/15
nadir_report
Patient report
nadir_years
0.83
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
11.96
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
6.31
pfa_18_3_octadecatrienoic_acig_g_usda
0.64
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0.09
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.15
phosphorus_mg_usda
734.55
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1386.21
probiotics_1wk
No
protein_g_usda
39.83
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
225.78
riboflavin_vitamin_b2_mg_usda
1.38
saa_ng_ml
6952.427493
sample name
qiita_sid_13338:13338.St.chronic.GLD104.T
sample type
stool
scd14_pg_ml
863844.6876
scd163_ng_ml
955.6559743
selenium_mcg_usda
50.72
sfa_10_0_decanoic_acid_g_usda
0.33
sfa_12_0_dodecanoic_acid_g_usda
0.61
sfa_14_0_tetradecanoic_acid_g_usda
1.41
sfa_16_0_hexadecanoic_acid_g_usda
7.91
sfa_18_0_octadecanoic_acid_g_usda
3.53
sfa_4_0_butanoic_acid_g_usda
0.41
sfa_6_0_hexanoic_acid_g_usda
0.22
sfa_8_0_octanoic_acid_g_usda
0.18
sodium_mg_usda
1828.84
statin_type
lipitor
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
0.92
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
823.8672389
tnf_beta_pg_ml
0.368053275
total_fat_g_usda
43.17
total_folate_mcg_usda
222.8
total_monounsaturated_fatty_acids_g_usda
16.96
total_polyunsaturated_fatty_acids_g_usda
7.47
total_saturated_fatty_acids_g_usda
14.99
total_sugars_g_usda
32.1
triglycerides
97
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
713.026689
vegf_pg_ml
73.1492474
viral load
0
vitamin_a_rae_mcg_usda
315.73
vitamin_b12_mcg_usda
3.41
vitamin_b6_mg_usda
0.92
vitamin_c_mg_usda
38.55
vitamin_e_as_alpha_tocopherol_mg_usda
3.55
vitamin_k_mcg_usda
32.85
watery_diarrhea_24hr_new
NO
zinc_mg_usda
5.52