13338.St.chronic.GLD029.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617024
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD029.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
528.85
art_years
3
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
3254.55
beta_cryptoxanthin_mcg_usda
144.5
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
7
caffeine_mg_usda
64.56
calcium_mg_usda
1206.06
carbohydrate_g_usda
246.41
cd4_cd38_single_positive_cells
1
cd4_count
1114
cd4_hladr_cd38_percent
52
cd4_hladr_single_positive_cells
1
cd4_nadir
825
cd4_percent
52
cd8_cd38_single_positive_cells
12
cd8_count
857
cd8_hladr_cd38_percent
9
cd8_hladr_single_positive_cells
7
cd8_percent
40
cholesterol_drugs_1mo
No
cholesterol_mg_usda
328.81
cohort
HIV treated
collection_timestamp
5/5/15
constipation_24hr_new
NO
copper_mg_usda
1.29
crp_ng_ml
4297.125835
current_art
stribild
current_art_start_date
5/1/14
decreased_stools_new
1
dietary_fiber_g_usda
16.27
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2117.92
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
591.57
folic_acid_mcg_usda
212.49
food_folate_mcg_usda
230.37
gender
male
gi_summary_score
1.714285714
glucose
95
gm_csf_pg_ml
0.335455958
gramwt_g_usda
2298.47
hard_stools_new
2
hdl
43
heartburn_new
1
hispanic
No
host age
44
host body habitat
colon
host body mass index
28.9
host body product
feces
host common name
human
host height
183
host scientific name
Homo sapiens
host subject id
HIV052
host taxid
9606
host weight
96.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
450.3618224
ifabp_pg_ml
6241.433
il_10_pg_ml
392.9780278
il_12_23p40_pg_ml
386.4525221
il_15_pg_ml
2.764520842
il_16_pg_ml
129.1623019
il_17a_pg_ml
2.601465931
il_22_pg_ml
546.6435698
il_6_pg_ml
328.9264099
il_7_pg_ml
6.704178021
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
3
initial_art_start_date
2012
insulin
6
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
16.61
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10142.85714
ldl
99
leptin
11.9
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
3187.54
lycopene_mcg_usda
4980.79
lymphocyte_count
2142
lymphocyte_percent
34
magnesium_mg_usda
288.88
mcp_1_pg_ml
9866.403481
metab_disease_score_binary
LOW
metabolic_disease_score
1.24764004
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.65
mfa_18_1_octadecenoic_acid_g_usda
28.57
mfa_20_1_eicosenoic_acid_g_usda
0.2
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
17.38
mped_dairy_cheese_usda
1.52
mped_dairy_milk_usda
1
mped_dairy_total_usda
2.73
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
15.92
mped_discfat_sol_usda
52.35
mped_fruit_citmlb_usda
0.53
mped_fruit_other_usda
0.55
mped_fruit_total_usda
1.08
mped_grain_nwhl_usda
5.81
mped_grain_total_usda
6.68
mped_grain_whl_usda
0.86
mped_legumes_usda
0.09
mped_m_egg_usda
0.62
mped_m_fish_hi_usda
0.07
mped_m_fish_lo_usda
0.89
mped_m_frank_usda
0.34
mped_m_meat_usda
2.68
mped_m_mpf_usda
4.97
mped_m_nutsd_usda
0.39
mped_m_organ_usda
0.01
mped_m_poult_usda
0.96
mped_m_soy_usda
0.05
mped_vegetable_dpyel_usda
0.1
mped_vegetable_drkgr_usda
0.33
mped_vegetable_other_usda
0.3
mped_vegetable_potato_usda
0.22
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.27
mped_vegetable_total_usda
1.3
nadir_date
7/1/12
nadir_report
Patient report
nadir_years
2.84
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
24.54
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
13.18
pfa_18_3_octadecatrienoic_acig_g_usda
1.49
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.13
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.08
phosphorus_mg_usda
1583.38
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2608.94
probiotics_1wk
Acidophilus probiotics until ~ 3 days prior to sampling.
protein_g_usda
95.29
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
460.46
riboflavin_vitamin_b2_mg_usda
2.3
saa_ng_ml
14504.81933
sample name
qiita_sid_13338:13338.St.chronic.GLD029.T
sample type
stool
scd14_pg_ml
1435158.995
scd163_ng_ml
719.8060424
selenium_mcg_usda
120.25
sfa_10_0_decanoic_acid_g_usda
0.62
sfa_12_0_dodecanoic_acid_g_usda
1.01
sfa_14_0_tetradecanoic_acid_g_usda
3.26
sfa_16_0_hexadecanoic_acid_g_usda
16.97
sfa_18_0_octadecanoic_acid_g_usda
7.68
sfa_4_0_butanoic_acid_g_usda
0.83
sfa_6_0_hexanoic_acid_g_usda
0.41
sfa_8_0_octanoic_acid_g_usda
0.35
sodium_mg_usda
3586.12
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.64
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
827.956
tnf_beta_pg_ml
0.778318727
total_fat_g_usda
85.58
total_folate_mcg_usda
442.91
total_monounsaturated_fatty_acids_g_usda
31.02
total_polyunsaturated_fatty_acids_g_usda
15.25
total_saturated_fatty_acids_g_usda
32.07
total_sugars_g_usda
112.4
triglycerides
93
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
2
vcam_1_ng_ml
735.6953982
vegf_pg_ml
36.61487819
viral load
20
vitamin_a_rae_mcg_usda
759.82
vitamin_b12_mcg_usda
6.91
vitamin_b6_mg_usda
2.12
vitamin_c_mg_usda
82.21
vitamin_e_as_alpha_tocopherol_mg_usda
7.12
vitamin_k_mcg_usda
171.99
watery_diarrhea_24hr_new
YES
zinc_mg_usda
14.67