13338.St.neg.GLD056
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617088
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD056
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
6.4
alcohol_g_usda
0
alpha_carotene_mcg_usda
264.99
beta_carotene_mcg_usda
1302.94
beta_cryptoxanthin_mcg_usda
34.66
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
2
caffeine_mg_usda
268.11
calcium_mg_usda
895.54
carbohydrate_g_usda
183.74
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
204.84
cohort
HIV negative MSM
collection_timestamp
not collected
constipation_24hr_new
NO
copper_mg_usda
1.09
crp_ng_ml
1329.048054
decreased_stools_new
1
dietary_fiber_g_usda
13.02
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2047.33
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
335.07
folic_acid_mcg_usda
94.64
food_folate_mcg_usda
173.97
gender
male
gi_summary_score
1.357142857
glucose
93
gm_csf_pg_ml
0.305674688
gramwt_g_usda
2840.66
hard_stools_new
2
hdl
38
heartburn_new
2
hispanic
No
host age
46
host body habitat
colon
host body mass index
29.9
host body product
feces
host common name
human
host height
179
host scientific name
Homo sapiens
host subject id
HIV169
host taxid
9606
host weight
95.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
456.2010031
ifabp_pg_ml
1536.801
il_10_pg_ml
351.3151626
il_12_23p40_pg_ml
134.0715456
il_15_pg_ml
4.961078866
il_16_pg_ml
433.3226262
il_17a_pg_ml
2.431500675
il_22_pg_ml
396.9985988
il_6_pg_ml
284.0029748
il_7_pg_ml
11.72935507
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
11
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
9.78
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
4259.398496
ldl
153
leptin
17.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
799.14
lycopene_mcg_usda
4098.15
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
300.46
mcp_1_pg_ml
13758.84166
metab_disease_score_binary
HIGH
metabolic_disease_score
1.53684737
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.32
mfa_18_1_octadecenoic_acid_g_usda
46.69
mfa_20_1_eicosenoic_acid_g_usda
0.56
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0
mped_add_sug_usda
12.36
mped_dairy_cheese_usda
0.77
mped_dairy_milk_usda
0.7
mped_dairy_total_usda
1.82
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
45.09
mped_discfat_sol_usda
55.42
mped_fruit_citmlb_usda
0.07
mped_fruit_other_usda
0.41
mped_fruit_total_usda
0.48
mped_grain_nwhl_usda
5.2
mped_grain_total_usda
5.31
mped_grain_whl_usda
0.11
mped_legumes_usda
0.03
mped_m_egg_usda
0.11
mped_m_fish_hi_usda
0.04
mped_m_fish_lo_usda
0.05
mped_m_frank_usda
0.12
mped_m_meat_usda
1.27
mped_m_mpf_usda
2.81
mped_m_nutsd_usda
3.41
mped_m_organ_usda
0
mped_m_poult_usda
1.33
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.05
mped_vegetable_drkgr_usda
0.07
mped_vegetable_other_usda
0.57
mped_vegetable_potato_usda
0.23
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.25
mped_vegetable_total_usda
1.24
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
22.24
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
21.81
pfa_18_3_octadecatrienoic_acig_g_usda
1.84
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1209.34
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2637.96
probiotics_1wk
Yogurt
protein_g_usda
72.64
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
288.36
riboflavin_vitamin_b2_mg_usda
1.98
saa_ng_ml
2450.103414
sample name
qiita_sid_13338:13338.St.neg.GLD056
sample type
stool
scd14_pg_ml
1862600.289
scd163_ng_ml
536.5236009
selenium_mcg_usda
75.6
sfa_10_0_decanoic_acid_g_usda
0.6
sfa_12_0_dodecanoic_acid_g_usda
0.88
sfa_14_0_tetradecanoic_acid_g_usda
3
sfa_16_0_hexadecanoic_acid_g_usda
19.47
sfa_18_0_octadecanoic_acid_g_usda
8.84
sfa_4_0_butanoic_acid_g_usda
0.79
sfa_6_0_hexanoic_acid_g_usda
0.46
sfa_8_0_octanoic_acid_g_usda
0.36
sodium_mg_usda
2851.83
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.01
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
729.6604898
tnf_beta_pg_ml
0.119877677
total_fat_g_usda
119.77
total_folate_mcg_usda
268.54
total_monounsaturated_fatty_acids_g_usda
49.15
total_polyunsaturated_fatty_acids_g_usda
24.12
total_saturated_fatty_acids_g_usda
36.48
total_sugars_g_usda
84.73
triglycerides
186
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
440.7511631
vegf_pg_ml
47.77044069
vitamin_a_rae_mcg_usda
409.13
vitamin_b12_mcg_usda
3.46
vitamin_b6_mg_usda
1.25
vitamin_c_mg_usda
45.38
vitamin_e_as_alpha_tocopherol_mg_usda
11.26
vitamin_k_mcg_usda
77.9
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.83