13338.St.neg.GLD116
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617102
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD116
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.5
alcohol_g_usda
2.25
alpha_carotene_mcg_usda
487.17
beta_carotene_mcg_usda
2735.28
beta_cryptoxanthin_mcg_usda
74.97
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
114.34
calcium_mg_usda
686.97
carbohydrate_g_usda
128.11
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
109.71
cohort
HIV negative MSW
collection_timestamp
5/10/16
constipation_24hr_new
NO
copper_mg_usda
0.77
crp_ng_ml
7821.341089
decreased_stools_new
1
dietary_fiber_g_usda
10.79
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1047.08
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
307.2
folic_acid_mcg_usda
91.91
food_folate_mcg_usda
151.06
gender
male
gi_summary_score
1.142857143
glucose
94
gm_csf_pg_ml
0.267424468
gramwt_g_usda
2280.81
hard_stools_new
1
hdl
31
heartburn_new
1
hispanic
No
host age
36
host body habitat
colon
host body mass index
25.4
host body product
feces
host common name
human
host height
184
host scientific name
Homo sapiens
host subject id
HIV211
host taxid
9606
host weight
86.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
386.2868504
ifabp_pg_ml
1197.303
il_10_pg_ml
631.6588697
il_12_23p40_pg_ml
408.3250609
il_15_pg_ml
3.086119556
il_16_pg_ml
393.1165498
il_17a_pg_ml
7.62029186
il_22_pg_ml
268.8151172
il_6_pg_ml
784.9678175
il_7_pg_ml
11.35937932
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
insulin
6
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
7.72
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
24513.15789
ldl
112
leptin
6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2752.92
lycopene_mcg_usda
3344.54
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
182.52
mcp_1_pg_ml
6203.213324
metab_disease_score_binary
HIGH
metabolic_disease_score
1.459335902
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.67
mfa_18_1_octadecenoic_acid_g_usda
14.18
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.16
mped_add_sug_usda
7.27
mped_dairy_cheese_usda
0.73
mped_dairy_milk_usda
0.47
mped_dairy_total_usda
1.29
mped_dairy_yogurt_usda
0.09
mped_discfat_oil_usda
8.15
mped_discfat_sol_usda
25.52
mped_fruit_citmlb_usda
0.28
mped_fruit_other_usda
0.35
mped_fruit_total_usda
0.63
mped_grain_nwhl_usda
2.66
mped_grain_total_usda
2.9
mped_grain_whl_usda
0.25
mped_legumes_usda
0.05
mped_m_egg_usda
0.1
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.05
mped_m_frank_usda
0.45
mped_m_meat_usda
0.79
mped_m_mpf_usda
1.54
mped_m_nutsd_usda
0.8
mped_m_organ_usda
0
mped_m_poult_usda
0.24
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.11
mped_vegetable_drkgr_usda
0.25
mped_vegetable_other_usda
0.75
mped_vegetable_potato_usda
0.2
mped_vegetable_starcy_usda
0.12
mped_vegetable_tomato_usda
0.19
mped_vegetable_total_usda
1.62
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
13.62
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
5.99
pfa_18_3_octadecatrienoic_acig_g_usda
0.6
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.04
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
748.5
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1634.29
probiotics_1wk
Yes
protein_g_usda
41.13
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
217.44
riboflavin_vitamin_b2_mg_usda
1.35
saa_ng_ml
50801.12513
sample name
qiita_sid_13338:13338.St.neg.GLD116
sample type
stool
scd14_pg_ml
1836506.489
scd163_ng_ml
599.5675613
selenium_mcg_usda
47.98
sfa_10_0_decanoic_acid_g_usda
0.35
sfa_12_0_dodecanoic_acid_g_usda
0.48
sfa_14_0_tetradecanoic_acid_g_usda
1.74
sfa_16_0_hexadecanoic_acid_g_usda
8.17
sfa_18_0_octadecanoic_acid_g_usda
3.7
sfa_4_0_butanoic_acid_g_usda
0.52
sfa_6_0_hexanoic_acid_g_usda
0.25
sfa_8_0_octanoic_acid_g_usda
0.18
sodium_mg_usda
1742.23
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.86
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
977.1059287
tnf_beta_pg_ml
0.224433865
total_fat_g_usda
41.97
total_folate_mcg_usda
242.96
total_monounsaturated_fatty_acids_g_usda
15.37
total_polyunsaturated_fatty_acids_g_usda
6.73
total_saturated_fatty_acids_g_usda
16.16
total_sugars_g_usda
54.38
triglycerides
138
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
636.4311256
vegf_pg_ml
89.72253183
vitamin_a_rae_mcg_usda
469.03
vitamin_b12_mcg_usda
2.88
vitamin_b6_mg_usda
1.22
vitamin_c_mg_usda
61.68
vitamin_e_as_alpha_tocopherol_mg_usda
4.47
vitamin_k_mcg_usda
135.22
watery_diarrhea_24hr_new
NO
zinc_mg_usda
6.69