13338.St.chronic.GLD057.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617034
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:13Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD057.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
1
adiponectin
11.4
alcohol_g_usda
0.89
alpha_carotene_mcg_usda
1152.4
art_years
20
arv_ccr5_antagonist
YES
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
4569.65
beta_cryptoxanthin_mcg_usda
288.55
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
2
caffeine_mg_usda
66.1
calcium_mg_usda
2645.03
carbohydrate_g_usda
399.8
cd4_cd38_single_positive_cells
83
cd4_count
240
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
1
cd4_nadir
not collected
cd4_percent
26
cd8_cd38_single_positive_cells
44
cd8_count
314
cd8_hladr_cd38_percent
12
cd8_hladr_single_positive_cells
5
cd8_percent
34
cholesterol_drugs_1mo
No
cholesterol_mg_usda
574.05
cohort
HIV treated
collection_timestamp
12/15/15
constipation_24hr_new
NO
copper_mg_usda
3
crp_ng_ml
473.8694731
current_art
Darunavir, Selzentry, Epzicom, Norvir, Isentress
current_art_start_date
1/1/14
decreased_stools_new
1
dietary_fiber_g_usda
26.24
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3490.03
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
695.12
folic_acid_mcg_usda
122.61
food_folate_mcg_usda
486.73
gender
male
gi_summary_score
1
glucose
116
gm_csf_pg_ml
0.556296949
gramwt_g_usda
12330.6
hard_stools_new
1
hdl
59
heartburn_new
1
hispanic
No
host age
58
host body habitat
colon
host body mass index
23.4
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV170
host taxid
9606
host weight
72.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
494.2613111
ifabp_pg_ml
1981.927
il_10_pg_ml
365.4925579
il_12_23p40_pg_ml
693.3523849
il_15_pg_ml
3.487697534
il_16_pg_ml
639.5733077
il_17a_pg_ml
19.70530975
il_22_pg_ml
274.3810958
il_6_pg_ml
329.6175754
il_7_pg_ml
14.93447763
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
1995
insulin
32
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
19.52
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
9475.56391
ldl
97
leptin
4.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
2640.78
lycopene_mcg_usda
29533.34
lymphocyte_count
924
lymphocyte_percent
14
magnesium_mg_usda
636.11
mcp_1_pg_ml
10034.19671
metab_disease_score_binary
HIGH
metabolic_disease_score
1.548299918
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.57
mfa_18_1_octadecenoic_acid_g_usda
49.49
mfa_20_1_eicosenoic_acid_g_usda
0.39
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.06
mped_add_sug_usda
23.93
mped_dairy_cheese_usda
0.66
mped_dairy_milk_usda
6.1
mped_dairy_total_usda
6.76
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
37.25
mped_discfat_sol_usda
87.59
mped_fruit_citmlb_usda
0.81
mped_fruit_other_usda
1.48
mped_fruit_total_usda
2.3
mped_grain_nwhl_usda
5.48
mped_grain_total_usda
6.02
mped_grain_whl_usda
0.53
mped_legumes_usda
0.13
mped_m_egg_usda
1.14
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.04
mped_m_frank_usda
0.44
mped_m_meat_usda
4.02
mped_m_mpf_usda
5.4
mped_m_nutsd_usda
2.74
mped_m_organ_usda
0
mped_m_poult_usda
0.9
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.17
mped_vegetable_drkgr_usda
0.17
mped_vegetable_other_usda
1.04
mped_vegetable_potato_usda
0.85
mped_vegetable_starcy_usda
0.27
mped_vegetable_tomato_usda
1.38
mped_vegetable_total_usda
3.88
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
31.07
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
23.88
pfa_18_3_octadecatrienoic_acig_g_usda
2.96
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.03
phosphorus_mg_usda
2775.92
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
6560.34
probiotics_1wk
No
protein_g_usda
144.14
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
655.78
riboflavin_vitamin_b2_mg_usda
4.68
saa_ng_ml
2699.620682
sample name
qiita_sid_13338:13338.St.chronic.GLD057.T
sample type
stool
scd14_pg_ml
1505985.024
scd163_ng_ml
942.4097169
selenium_mcg_usda
174.07
sfa_10_0_decanoic_acid_g_usda
1.42
sfa_12_0_dodecanoic_acid_g_usda
1.88
sfa_14_0_tetradecanoic_acid_g_usda
6.53
sfa_16_0_hexadecanoic_acid_g_usda
29.84
sfa_18_0_octadecanoic_acid_g_usda
13.11
sfa_4_0_butanoic_acid_g_usda
1.51
sfa_6_0_hexanoic_acid_g_usda
1.28
sfa_8_0_octanoic_acid_g_usda
1.27
sodium_mg_usda
5578.27
statin_type
atorvastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
2.49
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
985.5884508
tnf_beta_pg_ml
2.16510686
total_fat_g_usda
152.68
total_folate_mcg_usda
609.22
total_monounsaturated_fatty_acids_g_usda
52.06
total_polyunsaturated_fatty_acids_g_usda
27.41
total_saturated_fatty_acids_g_usda
58.32
total_sugars_g_usda
242.98
triglycerides
178
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
1088.883171
vegf_pg_ml
57.40119766
viral load
0
vitamin_a_rae_mcg_usda
1091.78
vitamin_b12_mcg_usda
11.32
vitamin_b6_mg_usda
3.55
vitamin_c_mg_usda
208.77
vitamin_e_as_alpha_tocopherol_mg_usda
13.18
vitamin_k_mcg_usda
169.98
watery_diarrhea_24hr_new
NO
zinc_mg_usda
22.31