13338.St.chronic.DM036.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617008
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM036.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
5.3
alcohol_g_usda
0
alpha_carotene_mcg_usda
429.77
art_years
5
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
YES
arv_pi
NO
beta_carotene_mcg_usda
1935.69
beta_cryptoxanthin_mcg_usda
214.46
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
46.29
calcium_mg_usda
787.64
carbohydrate_g_usda
213.15
cd4_cd38_single_positive_cells
56
cd4_count
1361
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
1
cd4_nadir
not collected
cd4_percent
48
cd8_cd38_single_positive_cells
15
cd8_count
1219
cd8_hladr_cd38_percent
3
cd8_hladr_single_positive_cells
5
cd8_percent
43
cholesterol_drugs_1mo
No
cholesterol_mg_usda
161.87
cohort
HIV treated
collection_timestamp
10/18/17
constipation_24hr_new
NO
copper_mg_usda
0.88
crp_ng_ml
5051.102034
current_art
Genvoya
current_art_start_date
3/1/17
decreased_stools_new
1
dietary_fiber_g_usda
10.68
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1485.41
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
318.46
folic_acid_mcg_usda
87.81
food_folate_mcg_usda
169.33
gender
male
gi_summary_score
1.571428571
glucose
92
gm_csf_pg_ml
0.24828697
gramwt_g_usda
2268.62
hard_stools_new
2
hdl
43
heartburn_new
2
hispanic
No
host age
46
host body habitat
colon
host body mass index
29.2
host body product
feces
host common name
human
host height
184
host scientific name
Homo sapiens
host subject id
HIV290
host taxid
9606
host weight
99
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
383.9827905
ifabp_pg_ml
6405.911
il_10_pg_ml
321.6003115
il_12_23p40_pg_ml
478.8738447
il_15_pg_ml
2.670342183
il_16_pg_ml
176.1235858
il_17a_pg_ml
3.098065823
il_22_pg_ml
375.4397345
il_6_pg_ml
586.2776399
il_7_pg_ml
7.103240409
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
initial_art_start_date
2012
insulin
11
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
8.94
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14250
ldl
113
leptin
50.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
1776.07
lycopene_mcg_usda
3011.02
lymphocyte_count
2835
lymphocyte_percent
40.5
magnesium_mg_usda
203.46
mcp_1_pg_ml
9209.330909
metab_disease_score_binary
HIGH
metabolic_disease_score
1.479049211
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.88
mfa_18_1_octadecenoic_acid_g_usda
17.75
mfa_20_1_eicosenoic_acid_g_usda
0.13
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
21.23
mped_dairy_cheese_usda
0.48
mped_dairy_milk_usda
0.99
mped_dairy_total_usda
1.54
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
9.55
mped_discfat_sol_usda
32.96
mped_fruit_citmlb_usda
0.7
mped_fruit_other_usda
0.67
mped_fruit_total_usda
1.37
mped_grain_nwhl_usda
2.88
mped_grain_total_usda
3.26
mped_grain_whl_usda
0.39
mped_legumes_usda
0.06
mped_m_egg_usda
0.22
mped_m_fish_hi_usda
0.01
mped_m_fish_lo_usda
0.08
mped_m_frank_usda
0.21
mped_m_meat_usda
1.22
mped_m_mpf_usda
1.9
mped_m_nutsd_usda
0.47
mped_m_organ_usda
0
mped_m_poult_usda
0.38
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
0.24
mped_vegetable_other_usda
0.19
mped_vegetable_potato_usda
0.2
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.13
mped_vegetable_total_usda
0.88
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
15.4
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.07
pfa_18_3_octadecatrienoic_acig_g_usda
0.86
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.06
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
890.1
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1939.54
probiotics_1wk
not collected
protein_g_usda
48.15
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
379.46
riboflavin_vitamin_b2_mg_usda
1.62
saa_ng_ml
7405.918361
sample name
qiita_sid_13338:13338.St.chronic.DM036.1.T
sample type
stool
scd14_pg_ml
2184423.821
scd163_ng_ml
828.0206754
selenium_mcg_usda
60.24
sfa_10_0_decanoic_acid_g_usda
0.44
sfa_12_0_dodecanoic_acid_g_usda
1.07
sfa_14_0_tetradecanoic_acid_g_usda
2.07
sfa_16_0_hexadecanoic_acid_g_usda
9.8
sfa_18_0_octadecanoic_acid_g_usda
4.65
sfa_4_0_butanoic_acid_g_usda
0.5
sfa_6_0_hexanoic_acid_g_usda
0.27
sfa_8_0_octanoic_acid_g_usda
0.26
sodium_mg_usda
1947.19
statin_type
pitavastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
0.97
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
785.4521266
tnf_beta_pg_ml
0.264659616
total_fat_g_usda
52.17
total_folate_mcg_usda
257.59
total_monounsaturated_fatty_acids_g_usda
19.17
total_polyunsaturated_fatty_acids_g_usda
9.14
total_saturated_fatty_acids_g_usda
19.75
total_sugars_g_usda
132.36
triglycerides
202
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
558.4316889
vegf_pg_ml
80.28518943
viral load
0
vitamin_a_rae_mcg_usda
567.39
vitamin_b12_mcg_usda
3.99
vitamin_b6_mg_usda
1.65
vitamin_c_mg_usda
96.09
vitamin_e_as_alpha_tocopherol_mg_usda
4.89
vitamin_k_mcg_usda
97.77
watery_diarrhea_24hr_new
NO
zinc_mg_usda
7.56