13338.St.chronic.GLD118.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617044
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD118.U
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
acid_regurgitation_new
2
adiponectin
13.8
alcohol_g_usda
3.82
alpha_carotene_mcg_usda
142.43
beta_carotene_mcg_usda
758.49
beta_cryptoxanthin_mcg_usda
112.43
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
126.96
calcium_mg_usda
1237.75
carbohydrate_g_usda
321.61
cd4_cd38_single_positive_cells
84
cd4_count
939
cd4_hladr_cd38_percent
6
cd4_hladr_single_positive_cells
0
cd4_nadir
939
cd4_percent
32
cd8_cd38_single_positive_cells
45
cd8_count
1583
cd8_hladr_cd38_percent
40
cd8_hladr_single_positive_cells
1
cd8_percent
54
cholesterol_drugs_1mo
No
cholesterol_mg_usda
182.46
cohort
HIV untreated
collection_timestamp
5/26/16
constipation_24hr_new
NO
copper_mg_usda
1.3
crp_ng_ml
490.0161685
decreased_stools_new
1
dietary_fiber_g_usda
18.47
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2187.3
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
3
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1240.32
folic_acid_mcg_usda
625.64
food_folate_mcg_usda
176.8
gender
male
gi_summary_score
1.5
glucose
67
gm_csf_pg_ml
0.27910312
gramwt_g_usda
2358.26
hard_stools_new
2
hdl
29
heartburn_new
2
hispanic
No
host age
31
host body habitat
colon
host body mass index
20
host body product
feces
host common name
human
host height
186
host scientific name
Homo sapiens
host subject id
HIV139
host taxid
9606
host weight
69
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
627.7692998
ifabp_pg_ml
1634.951
il_10_pg_ml
794.975287
il_12_23p40_pg_ml
502.9272131
il_15_pg_ml
2.93844558
il_16_pg_ml
345.1068845
il_17a_pg_ml
5.774093261
il_22_pg_ml
465.7570065
il_6_pg_ml
289.1722877
il_7_pg_ml
7.383815841
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
insulin
21
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
34.14
ivdu_12mo_new
Yes
ivdu_ever_new
Yes
lattitude
39.742 N
lbp_ng_ml
4146.616541
ldl
86
leptin
2.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
759.44
lycopene_mcg_usda
7039.95
lymphocyte_count
2932.8
lymphocyte_percent
56.4
magnesium_mg_usda
306.1
mcp_1_pg_ml
7731.13628
metab_disease_score_binary
HIGH
metabolic_disease_score
1.439827332
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.98
mfa_18_1_octadecenoic_acid_g_usda
24.1
mfa_20_1_eicosenoic_acid_g_usda
0.16
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.28
mped_add_sug_usda
26.66
mped_dairy_cheese_usda
0.58
mped_dairy_milk_usda
1.17
mped_dairy_total_usda
1.87
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
16.92
mped_discfat_sol_usda
41.12
mped_fruit_citmlb_usda
0.42
mped_fruit_other_usda
0.54
mped_fruit_total_usda
0.96
mped_grain_nwhl_usda
6.47
mped_grain_total_usda
8.47
mped_grain_whl_usda
2.01
mped_legumes_usda
0.05
mped_m_egg_usda
0.13
mped_m_fish_hi_usda
0.12
mped_m_fish_lo_usda
0.66
mped_m_frank_usda
0.39
mped_m_meat_usda
1.33
mped_m_mpf_usda
2.76
mped_m_nutsd_usda
0.69
mped_m_organ_usda
0
mped_m_poult_usda
0.26
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.03
mped_vegetable_other_usda
0.23
mped_vegetable_potato_usda
0.17
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.37
mped_vegetable_total_usda
0.87
nadir_date
5/26/16
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
39.76
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
11.8
pfa_18_3_octadecatrienoic_acig_g_usda
1.16
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.07
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1354.21
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2432.4
probiotics_1wk
No
protein_g_usda
70.83
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
785.76
riboflavin_vitamin_b2_mg_usda
3.85
saa_ng_ml
993.789558
sample name
qiita_sid_13338:13338.St.chronic.GLD118.U
sample type
stool
scd14_pg_ml
1681186.252
scd163_ng_ml
1165.988298
selenium_mcg_usda
104.24
sfa_10_0_decanoic_acid_g_usda
0.58
sfa_12_0_dodecanoic_acid_g_usda
1.03
sfa_14_0_tetradecanoic_acid_g_usda
2.57
sfa_16_0_hexadecanoic_acid_g_usda
13.09
sfa_18_0_octadecanoic_acid_g_usda
6.19
sfa_4_0_butanoic_acid_g_usda
0.77
sfa_6_0_hexanoic_acid_g_usda
0.38
sfa_8_0_octanoic_acid_g_usda
0.31
sodium_mg_usda
3093.67
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.99
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1158.430959
tnf_beta_pg_ml
0.397823872
total_fat_g_usda
70.94
total_folate_mcg_usda
802.21
total_monounsaturated_fatty_acids_g_usda
25.82
total_polyunsaturated_fatty_acids_g_usda
13.33
total_saturated_fatty_acids_g_usda
25.74
total_sugars_g_usda
151.68
triglycerides
149
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
1152.666036
vegf_pg_ml
74.29731749
viral load
228054
vitamin_a_rae_mcg_usda
863.16
vitamin_b12_mcg_usda
11.44
vitamin_b6_mg_usda
3.92
vitamin_c_mg_usda
107.59
vitamin_e_as_alpha_tocopherol_mg_usda
12.18
vitamin_k_mcg_usda
47.86
watery_diarrhea_24hr_new
NO
zinc_mg_usda
20.31