13338.St.neg.GLD136
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617109
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:22Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD136
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
Penicillin & Rocephin
acid_regurgitation_new
1
adiponectin
9.6
alcohol_g_usda
6.95
alpha_carotene_mcg_usda
104.88
beta_carotene_mcg_usda
1283.31
beta_cryptoxanthin_mcg_usda
51.22
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
573.15
calcium_mg_usda
1583.34
carbohydrate_g_usda
213.87
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
175.99
cohort
HIV negative MSM
collection_timestamp
10/11/16
constipation_24hr_new
NO
copper_mg_usda
1.85
crp_ng_ml
1640.387982
decreased_stools_new
1
dietary_fiber_g_usda
15.08
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1891.71
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
542.08
folic_acid_mcg_usda
188.68
food_folate_mcg_usda
219.64
gender
male
gi_summary_score
1.142857143
glucose
94
gm_csf_pg_ml
0.311552128
gramwt_g_usda
9530.87
hard_stools_new
1
hdl
40
heartburn_new
1
hispanic
No
host age
29
host body habitat
colon
host body mass index
24.7
host body product
feces
host common name
human
host height
186.5
host scientific name
Homo sapiens
host subject id
HIV241
host taxid
9606
host weight
86
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
387.602097
ifabp_pg_ml
1724.626
il_10_pg_ml
211.543786
il_12_23p40_pg_ml
181.2990473
il_15_pg_ml
3.873433618
il_16_pg_ml
274.2298744
il_17a_pg_ml
6.97085176
il_22_pg_ml
94.90237338
il_6_pg_ml
235.0596761
il_7_pg_ml
15.02511776
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
insulin
9
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
15.8
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
4465.72104
ldl
27
leptin
13.6
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1689.11
lycopene_mcg_usda
3594.3
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
438.1
mcp_1_pg_ml
9596.740355
metab_disease_score_binary
LOW
metabolic_disease_score
1.356792582
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1
mfa_18_1_octadecenoic_acid_g_usda
28.09
mfa_20_1_eicosenoic_acid_g_usda
0.3
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.52
mped_add_sug_usda
15.81
mped_dairy_cheese_usda
0.58
mped_dairy_milk_usda
2.49
mped_dairy_total_usda
3.13
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
18.59
mped_discfat_sol_usda
43.48
mped_fruit_citmlb_usda
0.25
mped_fruit_other_usda
0.28
mped_fruit_total_usda
0.53
mped_grain_nwhl_usda
3.38
mped_grain_total_usda
4.22
mped_grain_whl_usda
0.84
mped_legumes_usda
0.05
mped_m_egg_usda
0.06
mped_m_fish_hi_usda
0.23
mped_m_fish_lo_usda
0.13
mped_m_frank_usda
0.23
mped_m_meat_usda
0.99
mped_m_mpf_usda
2.13
mped_m_nutsd_usda
2.71
mped_m_organ_usda
0.02
mped_m_poult_usda
0.54
mped_m_soy_usda
0.33
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.15
mped_vegetable_other_usda
0.28
mped_vegetable_potato_usda
0.17
mped_vegetable_starcy_usda
0.1
mped_vegetable_tomato_usda
0.2
mped_vegetable_total_usda
0.91
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
24.4
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
13.54
pfa_18_3_octadecatrienoic_acig_g_usda
1.03
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.06
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1580.59
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3207.72
probiotics_1wk
No
protein_g_usda
76.23
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
649.75
riboflavin_vitamin_b2_mg_usda
3.59
saa_ng_ml
1243.524373
sample name
qiita_sid_13338:13338.St.neg.GLD136
sample type
stool
scd14_pg_ml
1643117.168
scd163_ng_ml
354.9012851
selenium_mcg_usda
90.16
sfa_10_0_decanoic_acid_g_usda
0.67
sfa_12_0_dodecanoic_acid_g_usda
1.06
sfa_14_0_tetradecanoic_acid_g_usda
2.87
sfa_16_0_hexadecanoic_acid_g_usda
14.07
sfa_18_0_octadecanoic_acid_g_usda
6.22
sfa_4_0_butanoic_acid_g_usda
0.94
sfa_6_0_hexanoic_acid_g_usda
0.49
sfa_8_0_octanoic_acid_g_usda
0.35
sodium_mg_usda
2726.01
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.68
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
523.35441
tnf_beta_pg_ml
0.392523831
total_fat_g_usda
81.65
total_folate_mcg_usda
410.26
total_monounsaturated_fatty_acids_g_usda
29.99
total_polyunsaturated_fatty_acids_g_usda
14.83
total_saturated_fatty_acids_g_usda
27.9
total_sugars_g_usda
115.68
triglycerides
172
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
481.660952
vegf_pg_ml
70.659837
vitamin_a_rae_mcg_usda
762.57
vitamin_b12_mcg_usda
7.21
vitamin_b6_mg_usda
2.04
vitamin_c_mg_usda
57.73
vitamin_e_as_alpha_tocopherol_mg_usda
8.03
vitamin_k_mcg_usda
96.66
watery_diarrhea_24hr_new
NO
zinc_mg_usda
13.24