13338.St.chronic.GLD016.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617015
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD016.U
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.7
alcohol_g_usda
2.25
alpha_carotene_mcg_usda
230.76
beta_carotene_mcg_usda
2650.62
beta_cryptoxanthin_mcg_usda
134
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
264.03
calcium_mg_usda
2454.64
carbohydrate_g_usda
327.24
cd4_cd38_single_positive_cells
91
cd4_count
403
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
1
cd4_nadir
403
cd4_percent
22
cd8_cd38_single_positive_cells
48
cd8_count
1063
cd8_hladr_cd38_percent
43
cd8_hladr_single_positive_cells
2
cd8_percent
58
cholesterol_drugs_1mo
No
cholesterol_mg_usda
516
cohort
HIV untreated
collection_timestamp
1/27/15
constipation_24hr_new
NO
copper_mg_usda
2.33
crp_ng_ml
744.3448691
decreased_stools_new
1
dietary_fiber_g_usda
18.09
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2926.58
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
855.49
folic_acid_mcg_usda
323.03
food_folate_mcg_usda
306.15
gender
male
gi_summary_score
1.357142857
glucose
77
gm_csf_pg_ml
0.183568301
gramwt_g_usda
13178.78
hard_stools_new
1
hdl
29
heartburn_new
3
hispanic
No
host age
33
host body habitat
colon
host body mass index
25.7
host body product
feces
host common name
human
host height
183
host scientific name
Homo sapiens
host subject id
HIV101
host taxid
9606
host weight
86
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
374.3463675
ifabp_pg_ml
1385.857
il_10_pg_ml
606.0529178
il_12_23p40_pg_ml
224.8987284
il_15_pg_ml
4.542010234
il_16_pg_ml
197.0164515
il_17a_pg_ml
2.534765079
il_22_pg_ml
311.0579123
il_6_pg_ml
356.4960608
il_7_pg_ml
21.60915377
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
2
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
21.1
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
6464.527027
ldl
119
leptin
1.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
3293.08
lycopene_mcg_usda
7717.8
lymphocyte_count
1833
lymphocyte_percent
31.6
magnesium_mg_usda
572.68
mcp_1_pg_ml
10671.30189
metab_disease_score_binary
LOW
metabolic_disease_score
1.222508365
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.92
mfa_18_1_octadecenoic_acid_g_usda
46.95
mfa_20_1_eicosenoic_acid_g_usda
0.24
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.16
mped_add_sug_usda
27.79
mped_dairy_cheese_usda
0.59
mped_dairy_milk_usda
3.73
mped_dairy_total_usda
4.54
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
45.6
mped_discfat_sol_usda
66.72
mped_fruit_citmlb_usda
0.46
mped_fruit_other_usda
0.42
mped_fruit_total_usda
0.88
mped_grain_nwhl_usda
4.97
mped_grain_total_usda
6.36
mped_grain_whl_usda
1.32
mped_legumes_usda
0.05
mped_m_egg_usda
1.36
mped_m_fish_hi_usda
0.06
mped_m_fish_lo_usda
0.18
mped_m_frank_usda
0.84
mped_m_meat_usda
1.24
mped_m_mpf_usda
4.99
mped_m_nutsd_usda
0.5
mped_m_organ_usda
0
mped_m_poult_usda
2.67
mped_m_soy_usda
0.04
mped_vegetable_dpyel_usda
0.04
mped_vegetable_drkgr_usda
0.33
mped_vegetable_other_usda
0.69
mped_vegetable_potato_usda
0.13
mped_vegetable_starcy_usda
0.17
mped_vegetable_tomato_usda
0.36
mped_vegetable_total_usda
1.71
nadir_date
1/27/15
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
not collected
niacin_mg_usda
37.99
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
21.44
pfa_18_3_octadecatrienoic_acig_g_usda
2.04
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
2372.33
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4198.86
probiotics_1wk
No
protein_g_usda
119.69
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
1169.55
riboflavin_vitamin_b2_mg_usda
4.73
saa_ng_ml
9771.911326
sample name
qiita_sid_13338:13338.St.chronic.GLD016.U
sample type
stool
scd14_pg_ml
1405074.462
scd163_ng_ml
681.4578088
selenium_mcg_usda
141.76
sfa_10_0_decanoic_acid_g_usda
1.08
sfa_12_0_dodecanoic_acid_g_usda
1.67
sfa_14_0_tetradecanoic_acid_g_usda
4.41
sfa_16_0_hexadecanoic_acid_g_usda
23.32
sfa_18_0_octadecanoic_acid_g_usda
11
sfa_4_0_butanoic_acid_g_usda
1.47
sfa_6_0_hexanoic_acid_g_usda
0.77
sfa_8_0_octanoic_acid_g_usda
0.53
sodium_mg_usda
4746.32
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.34
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
862.2532982
tnf_beta_pg_ml
0.330171911
total_fat_g_usda
130.58
total_folate_mcg_usda
629.14
total_monounsaturated_fatty_acids_g_usda
50.03
total_polyunsaturated_fatty_acids_g_usda
24.43
total_saturated_fatty_acids_g_usda
45.88
total_sugars_g_usda
190.44
triglycerides
59
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
787.8253816
vegf_pg_ml
326.6047569
viral load
24200
vitamin_a_rae_mcg_usda
1405.51
vitamin_b12_mcg_usda
12.14
vitamin_b6_mg_usda
3.63
vitamin_c_mg_usda
94.63
vitamin_e_as_alpha_tocopherol_mg_usda
12.32
vitamin_k_mcg_usda
213.35
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.36