13338.St.chronic.GLD080.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617039
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD080.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3.4
alcohol_g_usda
0
alpha_carotene_mcg_usda
355.85
art_years
17
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
YES
arv_pi
NO
beta_carotene_mcg_usda
5957.66
beta_cryptoxanthin_mcg_usda
352.79
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
5
caffeine_mg_usda
10.6
calcium_mg_usda
871.87
carbohydrate_g_usda
265.9
cd4_cd38_single_positive_cells
45
cd4_count
922.32
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
2
cd4_nadir
390
cd4_percent
28
cd8_cd38_single_positive_cells
41
cd8_count
1976.4
cd8_hladr_cd38_percent
16
cd8_hladr_single_positive_cells
10
cd8_percent
60
cholesterol_drugs_1mo
No
cholesterol_mg_usda
134.37
cohort
HIV treated LD
collection_timestamp
2/23/16
constipation_24hr_new
NO
copper_mg_usda
2.79
crp_ng_ml
725.6781844
current_art
Genvoya
current_art_start_date
1/15/16
decreased_stools_new
1
dietary_fiber_g_usda
32.07
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1880.4
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
573.25
folic_acid_mcg_usda
73.25
food_folate_mcg_usda
448.47
gender
male
gi_summary_score
1.142857143
glucose
89
gm_csf_pg_ml
0.502765319
gramwt_g_usda
5901.68
hard_stools_new
1
hdl
38
heartburn_new
1
hispanic
No
host age
43
host body habitat
colon
host body mass index
28
host body product
feces
host common name
human
host height
172.7
host scientific name
Homo sapiens
host subject id
HIV182
host taxid
9606
host weight
83.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
465.9897802
ifabp_pg_ml
5111.933
il_10_pg_ml
203.0256728
il_12_23p40_pg_ml
278.9940286
il_15_pg_ml
4.438909745
il_16_pg_ml
1080.964108
il_17a_pg_ml
7.125652403
il_22_pg_ml
97.79684995
il_6_pg_ml
159.5073916
il_7_pg_ml
53.13190546
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
1999
insulin
5
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
15.74
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6806.146572
ldl
100
leptin
5.1
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
3232.17
lycopene_mcg_usda
18625.71
lymphocyte_count
3294
lymphocyte_percent
54
magnesium_mg_usda
480.55
mcp_1_pg_ml
7508.473413
metab_disease_score_binary
LOW
metabolic_disease_score
1.315267315
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.73
mfa_18_1_octadecenoic_acid_g_usda
27.96
mfa_20_1_eicosenoic_acid_g_usda
0.31
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
8.8
mped_dairy_cheese_usda
0.51
mped_dairy_milk_usda
0.65
mped_dairy_total_usda
1.18
mped_dairy_yogurt_usda
0.01
mped_discfat_oil_usda
34.48
mped_discfat_sol_usda
24.36
mped_fruit_citmlb_usda
2.38
mped_fruit_other_usda
2.25
mped_fruit_total_usda
4.63
mped_grain_nwhl_usda
2.3
mped_grain_total_usda
2.59
mped_grain_whl_usda
0.29
mped_legumes_usda
0.73
mped_m_egg_usda
0.44
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0
mped_m_frank_usda
0.05
mped_m_meat_usda
0.19
mped_m_mpf_usda
0.31
mped_m_nutsd_usda
2.96
mped_m_organ_usda
0
mped_m_poult_usda
0.08
mped_m_soy_usda
0.37
mped_vegetable_dpyel_usda
0.12
mped_vegetable_drkgr_usda
0.41
mped_vegetable_other_usda
0.57
mped_vegetable_potato_usda
0.7
mped_vegetable_starcy_usda
0.3
mped_vegetable_tomato_usda
0.64
mped_vegetable_total_usda
2.75
nadir_date
1/1/06
nadir_report
Patient report
nadir_years
10.14
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
18.4
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
19.3
pfa_18_3_octadecatrienoic_acig_g_usda
1.16
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.04
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
1195.05
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4114.75
probiotics_1wk
No
protein_g_usda
58.71
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
449.37
riboflavin_vitamin_b2_mg_usda
1.54
saa_ng_ml
1132.685469
sample name
qiita_sid_13338:13338.St.chronic.GLD080.T
sample type
stool
scd14_pg_ml
1739771.119
scd163_ng_ml
1325.427425
selenium_mcg_usda
58.46
sfa_10_0_decanoic_acid_g_usda
0.19
sfa_12_0_dodecanoic_acid_g_usda
0.3
sfa_14_0_tetradecanoic_acid_g_usda
1.1
sfa_16_0_hexadecanoic_acid_g_usda
11.81
sfa_18_0_octadecanoic_acid_g_usda
4.1
sfa_4_0_butanoic_acid_g_usda
0.27
sfa_6_0_hexanoic_acid_g_usda
0.11
sfa_8_0_octanoic_acid_g_usda
0.11
sodium_mg_usda
2880.63
statin_type
pitavastatin/placebo
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.58
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
628.5868776
tnf_beta_pg_ml
0.375983117
total_fat_g_usda
74.81
total_folate_mcg_usda
521.84
total_monounsaturated_fatty_acids_g_usda
29.18
total_polyunsaturated_fatty_acids_g_usda
20.81
total_saturated_fatty_acids_g_usda
18.74
total_sugars_g_usda
129.12
triglycerides
103
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
459.3626855
vegf_pg_ml
244.0040514
viral load
0
vitamin_a_rae_mcg_usda
974.91
vitamin_b12_mcg_usda
2.21
vitamin_b6_mg_usda
2.3
vitamin_c_mg_usda
224.82
vitamin_e_as_alpha_tocopherol_mg_usda
14.76
vitamin_k_mcg_usda
212.66
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.41