13338.St.chronic.GLD157.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617058
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD157.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
20.1
alcohol_g_usda
1.72
alpha_carotene_mcg_usda
305.51
art_years
25
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
1307.5
beta_cryptoxanthin_mcg_usda
77.71
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
569.93
calcium_mg_usda
1987.55
carbohydrate_g_usda
345
cd4_cd38_single_positive_cells
38
cd4_count
455
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
3
cd4_nadir
70
cd4_percent
24
cd8_cd38_single_positive_cells
10
cd8_count
1156
cd8_hladr_cd38_percent
2
cd8_hladr_single_positive_cells
4
cd8_percent
61
cholesterol_drugs_1mo
No
cholesterol_mg_usda
330.78
cohort
HIV treated LD
collection_timestamp
5/4/17
constipation_24hr_new
NO
copper_mg_usda
1.82
crp_ng_ml
527.6259115
current_art
Sustiva, Prezista, Norvir, Truvada
current_art_start_date
1/1/12
decreased_stools_new
1
dietary_fiber_g_usda
23.75
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2773
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
979
folic_acid_mcg_usda
394.98
food_folate_mcg_usda
307.49
gender
male
gi_summary_score
1.214285714
glucose
110
gm_csf_pg_ml
0.32568216
gramwt_g_usda
6874.49
hard_stools_new
1
hdl
49
heartburn_new
1
hispanic
No
host age
66
host body habitat
colon
host body mass index
21.9
host body product
feces
host common name
human
host height
180
host scientific name
Homo sapiens
host subject id
HIV278
host taxid
9606
host weight
71
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
414.7244375
ifabp_pg_ml
3196.617
il_10_pg_ml
231.1253913
il_12_23p40_pg_ml
166.7405448
il_15_pg_ml
4.109499742
il_16_pg_ml
308.1760411
il_17a_pg_ml
4.09666819
il_22_pg_ml
222.2829299
il_6_pg_ml
366.5756416
il_7_pg_ml
8.304137885
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1992
insulin
4
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
30.11
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5990.543735
ldl
101
leptin
5.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1103.57
lycopene_mcg_usda
2699.36
lymphocyte_count
1895
lymphocyte_percent
37.9
magnesium_mg_usda
510.07
mcp_1_pg_ml
11178.12478
metab_disease_score_binary
LOW
metabolic_disease_score
1.090443817
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.57
mfa_18_1_octadecenoic_acid_g_usda
28.21
mfa_20_1_eicosenoic_acid_g_usda
0.21
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.13
mped_add_sug_usda
14.56
mped_dairy_cheese_usda
0.12
mped_dairy_milk_usda
3.74
mped_dairy_total_usda
4.08
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
17.81
mped_discfat_sol_usda
52.78
mped_fruit_citmlb_usda
0.24
mped_fruit_other_usda
0.94
mped_fruit_total_usda
1.17
mped_grain_nwhl_usda
9.09
mped_grain_total_usda
12.66
mped_grain_whl_usda
3.57
mped_legumes_usda
0.01
mped_m_egg_usda
0.17
mped_m_fish_hi_usda
0.02
mped_m_fish_lo_usda
0.2
mped_m_frank_usda
2.44
mped_m_meat_usda
3.71
mped_m_mpf_usda
7.99
mped_m_nutsd_usda
0.22
mped_m_organ_usda
0
mped_m_poult_usda
1.62
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.06
mped_vegetable_drkgr_usda
0.16
mped_vegetable_other_usda
0.74
mped_vegetable_potato_usda
0.21
mped_vegetable_starcy_usda
0.09
mped_vegetable_tomato_usda
0.14
mped_vegetable_total_usda
1.39
nadir_date
1/1/97
nadir_report
Patient report
nadir_years
20.34
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
39.81
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
15.53
pfa_18_3_octadecatrienoic_acig_g_usda
1.78
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.05
phosphorus_mg_usda
2415.32
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4815.2
probiotics_1wk
no
protein_g_usda
136.64
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
1217.96
riboflavin_vitamin_b2_mg_usda
5.28
saa_ng_ml
1159.277461
sample name
qiita_sid_13338:13338.St.chronic.GLD157.T
sample type
stool
scd14_pg_ml
316541.6897
scd163_ng_ml
876.0179765
selenium_mcg_usda
191.08
sfa_10_0_decanoic_acid_g_usda
1.1
sfa_12_0_dodecanoic_acid_g_usda
1.51
sfa_14_0_tetradecanoic_acid_g_usda
4
sfa_16_0_hexadecanoic_acid_g_usda
19.1
sfa_18_0_octadecanoic_acid_g_usda
8.8
sfa_4_0_butanoic_acid_g_usda
1.35
sfa_6_0_hexanoic_acid_g_usda
0.8
sfa_8_0_octanoic_acid_g_usda
0.54
sodium_mg_usda
4508.35
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.57
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
688.7426034
tnf_beta_pg_ml
0.33217769
total_fat_g_usda
97.69
total_folate_mcg_usda
702.85
total_monounsaturated_fatty_acids_g_usda
30.61
total_polyunsaturated_fatty_acids_g_usda
17.65
total_saturated_fatty_acids_g_usda
38.51
total_sugars_g_usda
145
triglycerides
84
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
568.017382
vegf_pg_ml
59.86170696
viral load
10
vitamin_a_rae_mcg_usda
1344.31
vitamin_b12_mcg_usda
9.91
vitamin_b6_mg_usda
3.34
vitamin_c_mg_usda
81.24
vitamin_e_as_alpha_tocopherol_mg_usda
6.74
vitamin_k_mcg_usda
88.35
watery_diarrhea_24hr_new
NO
zinc_mg_usda
20.78