13338.St.chronic.GLD143
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617052
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD143
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
8.2
alcohol_g_usda
26.43
alpha_carotene_mcg_usda
2882.44
beta_carotene_mcg_usda
7804.79
beta_cryptoxanthin_mcg_usda
85.96
bloating_24hr_new
NO
borborygmus_new
3
bristol_stool_scale_sample
4
caffeine_mg_usda
528.28
calcium_mg_usda
1083.61
carbohydrate_g_usda
139.9
cd4_cd38_single_positive_cells
92
cd4_count
425
cd4_hladr_cd38_percent
5
cd4_hladr_single_positive_cells
0
cd4_nadir
425
cd4_percent
31
cd8_cd38_single_positive_cells
58
cd8_count
439
cd8_hladr_cd38_percent
24
cd8_hladr_single_positive_cells
0
cd8_percent
32
cholesterol_drugs_1mo
No
cholesterol_mg_usda
311.82
cohort
HIV untreated
collection_timestamp
1/10/17
constipation_24hr_new
NO
copper_mg_usda
1.72
crp_ng_ml
2086.471676
decreased_stools_new
1
dietary_fiber_g_usda
12.14
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1544.25
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
333.11
folic_acid_mcg_usda
67.13
food_folate_mcg_usda
218.96
gender
male
gi_summary_score
1.428571429
glucose
72
gm_csf_pg_ml
0.852089387
gramwt_g_usda
10173.46
hard_stools_new
1
hdl
53
heartburn_new
2
hispanic
No
host age
41
host body habitat
colon
host body mass index
21
host body product
feces
host common name
human
host height
185
host scientific name
Homo sapiens
host subject id
HIV258
host taxid
9606
host weight
72
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
429.1093828
ifabp_pg_ml
1707.86
il_10_pg_ml
395.994332
il_12_23p40_pg_ml
425.053649
il_15_pg_ml
5.586804009
il_16_pg_ml
470.457541
il_17a_pg_ml
7.097790268
il_22_pg_ml
957.716837
il_6_pg_ml
365.8666989
il_7_pg_ml
17.92245291
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
2
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
10
ivdu_12mo_new
Yes
ivdu_ever_new
Yes
lattitude
39.742 N
lbp_ng_ml
9607.565012
ldl
102
leptin
3.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2454.04
lycopene_mcg_usda
7411.43
lymphocyte_count
1371.6
lymphocyte_percent
38.1
magnesium_mg_usda
385.84
mcp_1_pg_ml
12035.91181
metab_disease_score_binary
LOW
metabolic_disease_score
0.88475123
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.13
mfa_18_1_octadecenoic_acid_g_usda
26.3
mfa_20_1_eicosenoic_acid_g_usda
0.26
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.79
mped_add_sug_usda
7.21
mped_dairy_cheese_usda
0.43
mped_dairy_milk_usda
0.06
mped_dairy_total_usda
1.02
mped_dairy_yogurt_usda
0.53
mped_discfat_oil_usda
18.34
mped_discfat_sol_usda
30.72
mped_fruit_citmlb_usda
0.13
mped_fruit_other_usda
0.51
mped_fruit_total_usda
0.64
mped_grain_nwhl_usda
2.85
mped_grain_total_usda
3.14
mped_grain_whl_usda
0.28
mped_legumes_usda
0.02
mped_m_egg_usda
0.98
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.02
mped_m_frank_usda
0.76
mped_m_meat_usda
1.28
mped_m_mpf_usda
2.25
mped_m_nutsd_usda
2.29
mped_m_organ_usda
0.01
mped_m_poult_usda
0.19
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.62
mped_vegetable_drkgr_usda
0.25
mped_vegetable_other_usda
0.16
mped_vegetable_potato_usda
0.06
mped_vegetable_starcy_usda
0.03
mped_vegetable_tomato_usda
0.68
mped_vegetable_total_usda
1.8
nadir_date
1/10/17
nadir_report
Medical records report
nadir_years
0
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
16.87
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
9.66
pfa_18_3_octadecatrienoic_acig_g_usda
0.63
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
987.5
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2907.99
probiotics_1wk
No
protein_g_usda
57.18
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
In a relationship but not living together
retinol_mcg_usda
237.6
riboflavin_vitamin_b2_mg_usda
2.19
saa_ng_ml
1739.087039
sample name
qiita_sid_13338:13338.St.chronic.GLD143
sample type
stool
scd14_pg_ml
2165048.504
scd163_ng_ml
1149.629023
selenium_mcg_usda
80.57
sfa_10_0_decanoic_acid_g_usda
0.4
sfa_12_0_dodecanoic_acid_g_usda
0.65
sfa_14_0_tetradecanoic_acid_g_usda
1.87
sfa_16_0_hexadecanoic_acid_g_usda
11.67
sfa_18_0_octadecanoic_acid_g_usda
4.87
sfa_4_0_butanoic_acid_g_usda
0.5
sfa_6_0_hexanoic_acid_g_usda
0.26
sfa_8_0_octanoic_acid_g_usda
0.22
sodium_mg_usda
2451.69
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.08
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
1033.681592
tnf_beta_pg_ml
0.373381348
total_fat_g_usda
67.99
total_folate_mcg_usda
286
total_monounsaturated_fatty_acids_g_usda
28.03
total_polyunsaturated_fatty_acids_g_usda
10.55
total_saturated_fatty_acids_g_usda
21.31
total_sugars_g_usda
64.23
triglycerides
68
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
699.2764158
vegf_pg_ml
137.6808557
viral load
314000
vitamin_a_rae_mcg_usda
1012.18
vitamin_b12_mcg_usda
3.13
vitamin_b6_mg_usda
1.42
vitamin_c_mg_usda
53.86
vitamin_e_as_alpha_tocopherol_mg_usda
7.83
vitamin_k_mcg_usda
119.64
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.4