13338.St.neg.DM055.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617069
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM055.1
abdominal_distension_new
3
abdominal_pain_24hr_new
YES
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
8.3
alcohol_g_usda
14.65
alpha_carotene_mcg_usda
158.46
beta_carotene_mcg_usda
1162.3
beta_cryptoxanthin_mcg_usda
67
bloating_24hr_new
YES
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
205.91
calcium_mg_usda
503.15
carbohydrate_g_usda
86.01
cd4_cd38_single_positive_cells
78
cd4_count
not collected
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
0
cd4_percent
not collected
cd8_cd38_single_positive_cells
6
cd8_count
not collected
cd8_hladr_cd38_percent
1
cd8_hladr_single_positive_cells
28
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
391.82
cohort
HIV negative MSM
collection_timestamp
10/18/17
constipation_24hr_new
NO
copper_mg_usda
0.6
crp_ng_ml
4432.17998
decreased_stools_new
2
dietary_fiber_g_usda
7.35
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1016.52
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
3
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
206.39
folic_acid_mcg_usda
34.11
food_folate_mcg_usda
148.37
gender
male
gi_summary_score
2.357142857
glucose
79
gm_csf_pg_ml
0.607151093
gramwt_g_usda
1847.59
hard_stools_new
1
hdl
42
heartburn_new
2
hispanic
No
host age
27
host body habitat
colon
host body mass index
24.7
host body product
feces
host common name
human
host height
175
host scientific name
Homo sapiens
host subject id
HIV285
host taxid
9606
host weight
75.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
404.9804184
ifabp_pg_ml
4694.022
il_10_pg_ml
266.6268307
il_12_23p40_pg_ml
182.3019442
il_15_pg_ml
2.576544929
il_16_pg_ml
322.8771265
il_17a_pg_ml
5.226626229
il_22_pg_ml
203.9587725
il_6_pg_ml
206.1070427
il_7_pg_ml
13.12725095
incomplete_evacuation_new
3
increased_flatus_new
3
increased_stools_new
3
insulin
3
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
5.69
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6274.231678
ldl
62
leptin
7.2
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
1585.42
lycopene_mcg_usda
1345.5
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
149.47
mcp_1_pg_ml
7065.445222
metab_disease_score_binary
LOW
metabolic_disease_score
0.93968412
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.03
mfa_18_1_octadecenoic_acid_g_usda
16.98
mfa_20_1_eicosenoic_acid_g_usda
0.12
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.09
mped_add_sug_usda
4.29
mped_dairy_cheese_usda
0.82
mped_dairy_milk_usda
0.03
mped_dairy_total_usda
0.95
mped_dairy_yogurt_usda
0.09
mped_discfat_oil_usda
7.58
mped_discfat_sol_usda
28.43
mped_fruit_citmlb_usda
0.15
mped_fruit_other_usda
0.48
mped_fruit_total_usda
0.64
mped_grain_nwhl_usda
1.64
mped_grain_total_usda
1.95
mped_grain_whl_usda
0.31
mped_legumes_usda
0.02
mped_m_egg_usda
1.48
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.18
mped_m_frank_usda
0.47
mped_m_meat_usda
0.5
mped_m_mpf_usda
1.61
mped_m_nutsd_usda
0.32
mped_m_organ_usda
0
mped_m_poult_usda
0.18
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.09
mped_vegetable_other_usda
0.4
mped_vegetable_potato_usda
0.1
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.15
mped_vegetable_total_usda
0.8
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
9.58
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
5.57
pfa_18_3_octadecatrienoic_acig_g_usda
0.6
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.14
pfa_20_5_eicosapentaenoic_acid_g_usda
0.04
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
723.34
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1435.27
probiotics_1wk
not collected
protein_g_usda
41.87
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
258.14
riboflavin_vitamin_b2_mg_usda
1.39
saa_ng_ml
1163.095796
sample name
qiita_sid_13338:13338.St.neg.DM055.1
sample type
stool
scd14_pg_ml
743027.2488
scd163_ng_ml
832.3988241
selenium_mcg_usda
63.96
sfa_10_0_decanoic_acid_g_usda
0.31
sfa_12_0_dodecanoic_acid_g_usda
0.34
sfa_14_0_tetradecanoic_acid_g_usda
1.63
sfa_16_0_hexadecanoic_acid_g_usda
9.21
sfa_18_0_octadecanoic_acid_g_usda
3.9
sfa_4_0_butanoic_acid_g_usda
0.46
sfa_6_0_hexanoic_acid_g_usda
0.22
sfa_8_0_octanoic_acid_g_usda
0.16
sodium_mg_usda
1698.99
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.57
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
456.8028391
tnf_beta_pg_ml
0.257527792
total_fat_g_usda
46.83
total_folate_mcg_usda
182.55
total_monounsaturated_fatty_acids_g_usda
18.41
total_polyunsaturated_fatty_acids_g_usda
6.56
total_saturated_fatty_acids_g_usda
16.78
total_sugars_g_usda
35.32
triglycerides
32
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
3
vcam_1_ng_ml
640.523778
vegf_pg_ml
51.85883163
vitamin_a_rae_mcg_usda
364.34
vitamin_b12_mcg_usda
2.74
vitamin_b6_mg_usda
0.92
vitamin_c_mg_usda
55.95
vitamin_e_as_alpha_tocopherol_mg_usda
3.68
vitamin_k_mcg_usda
73.64
watery_diarrhea_24hr_new
YES
zinc_mg_usda
5.4