13338.St.neg.GLD117
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617103
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD117
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
2
adiponectin
8.1
alcohol_g_usda
10.27
alpha_carotene_mcg_usda
584.58
beta_carotene_mcg_usda
2361.75
beta_cryptoxanthin_mcg_usda
140.44
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
7
caffeine_mg_usda
102.51
calcium_mg_usda
1136.72
carbohydrate_g_usda
273.75
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
233.04
cohort
HIV negative MSM
collection_timestamp
6/2/16
constipation_24hr_new
NO
copper_mg_usda
1.8
crp_ng_ml
1480.757517
decreased_stools_new
1
dietary_fiber_g_usda
19
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2191.1
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
852.88
folic_acid_mcg_usda
364.82
food_folate_mcg_usda
232.62
gender
male
gi_summary_score
1.5
glucose
82
gm_csf_pg_ml
0.257260332
gramwt_g_usda
4683.61
hard_stools_new
2
hdl
42
heartburn_new
2
hispanic
No
host age
48
host body habitat
colon
host body mass index
29
host body product
feces
host common name
human
host height
178
host scientific name
Homo sapiens
host subject id
HIV137
host taxid
9606
host weight
94
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
327.9276562
ifabp_pg_ml
2166.52
il_10_pg_ml
474.1533731
il_12_23p40_pg_ml
308.0930946
il_15_pg_ml
3.7818007
il_16_pg_ml
444.9609429
il_17a_pg_ml
4.005271508
il_22_pg_ml
455.0443285
il_6_pg_ml
241.6428153
il_7_pg_ml
9.704667748
incomplete_evacuation_new
2
increased_flatus_new
1
increased_stools_new
2
insulin
5
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
23.53
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10640.97744
ldl
101
leptin
10
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1832.23
lycopene_mcg_usda
9281.77
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
365.4
mcp_1_pg_ml
8163.965823
metab_disease_score_binary
LOW
metabolic_disease_score
1.19905256
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.11
mfa_18_1_octadecenoic_acid_g_usda
30.84
mfa_20_1_eicosenoic_acid_g_usda
0.3
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.75
mped_add_sug_usda
14.71
mped_dairy_cheese_usda
0.58
mped_dairy_milk_usda
0.83
mped_dairy_total_usda
1.53
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
26.15
mped_discfat_sol_usda
39.34
mped_fruit_citmlb_usda
0.4
mped_fruit_other_usda
1.37
mped_fruit_total_usda
1.77
mped_grain_nwhl_usda
5.63
mped_grain_total_usda
6.75
mped_grain_whl_usda
1.12
mped_legumes_usda
0.09
mped_m_egg_usda
0.36
mped_m_fish_hi_usda
0.5
mped_m_fish_lo_usda
0.41
mped_m_frank_usda
0.64
mped_m_meat_usda
1.22
mped_m_mpf_usda
3.79
mped_m_nutsd_usda
2.16
mped_m_organ_usda
0
mped_m_poult_usda
1.02
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.09
mped_vegetable_drkgr_usda
0.12
mped_vegetable_other_usda
0.4
mped_vegetable_potato_usda
0.27
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.51
mped_vegetable_total_usda
1.47
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
33.34
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
16.59
pfa_18_3_octadecatrienoic_acig_g_usda
1.29
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.11
pfa_20_5_eicosapentaenoic_acid_g_usda
0.09
pfa_22_5_docosapentaenoic_acid_g_usda
0.03
pfa_22_6_docosahexaenoic_acid_g_usda
0.14
phosphorus_mg_usda
1285.99
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2987.61
probiotics_1wk
No
protein_g_usda
75.94
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
467.7
riboflavin_vitamin_b2_mg_usda
2.93
saa_ng_ml
2251.988173
sample name
qiita_sid_13338:13338.St.neg.GLD117
sample type
stool
scd14_pg_ml
1204042.482
scd163_ng_ml
841.0194301
selenium_mcg_usda
104.25
sfa_10_0_decanoic_acid_g_usda
0.47
sfa_12_0_dodecanoic_acid_g_usda
0.93
sfa_14_0_tetradecanoic_acid_g_usda
2.31
sfa_16_0_hexadecanoic_acid_g_usda
14.43
sfa_18_0_octadecanoic_acid_g_usda
6.2
sfa_4_0_butanoic_acid_g_usda
0.56
sfa_6_0_hexanoic_acid_g_usda
0.35
sfa_8_0_octanoic_acid_g_usda
0.33
sodium_mg_usda
3373.9
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.23
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
794.1898218
tnf_beta_pg_ml
0.191780106
total_fat_g_usda
85.01
total_folate_mcg_usda
598.04
total_monounsaturated_fatty_acids_g_usda
32.82
total_polyunsaturated_fatty_acids_g_usda
18.4
total_saturated_fatty_acids_g_usda
26.5
total_sugars_g_usda
127.67
triglycerides
104
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
668.6871333
vegf_pg_ml
67.94567033
vitamin_a_rae_mcg_usda
695.22
vitamin_b12_mcg_usda
7.28
vitamin_b6_mg_usda
3.1
vitamin_c_mg_usda
148.72
vitamin_e_as_alpha_tocopherol_mg_usda
12.89
vitamin_k_mcg_usda
101.04
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.5