13338.St.neg.GLD046
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617083
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD046
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
6.1
alcohol_g_usda
0
alpha_carotene_mcg_usda
716.37
beta_carotene_mcg_usda
2656.78
beta_cryptoxanthin_mcg_usda
72.52
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
74.12
calcium_mg_usda
1707.73
carbohydrate_g_usda
535.12
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
520.96
cohort
HIV negative MSM
collection_timestamp
10/27/15
constipation_24hr_new
NO
copper_mg_usda
2.63
crp_ng_ml
6029.987887
decreased_stools_new
1
dietary_fiber_g_usda
24.77
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3870.99
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
667.44
folic_acid_mcg_usda
211.22
food_folate_mcg_usda
308.52
gender
male
gi_summary_score
1.357142857
glucose
89
gm_csf_pg_ml
0.108451437
gramwt_g_usda
11504.23
hard_stools_new
2
hdl
28
heartburn_new
2
hispanic
No
host age
33
host body habitat
colon
host body mass index
26.4
host body product
feces
host common name
human
host height
191
host scientific name
Homo sapiens
host subject id
HIV160
host taxid
9606
host weight
96.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
332.0310812
ifabp_pg_ml
3547.861
il_10_pg_ml
402.4956005
il_12_23p40_pg_ml
246.4234808
il_15_pg_ml
3.364714699
il_16_pg_ml
566.4193995
il_17a_pg_ml
3.441618237
il_22_pg_ml
496.7849985
il_6_pg_ml
344.3544804
il_7_pg_ml
28.65515992
incomplete_evacuation_new
2
increased_flatus_new
1
increased_stools_new
1
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
23.24
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
15349.66216
ldl
98
leptin
2.4
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2070.61
lycopene_mcg_usda
10330.8
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
491.56
mcp_1_pg_ml
8258.3721
metab_disease_score_binary
LOW
metabolic_disease_score
1.317928418
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.29
mfa_18_1_octadecenoic_acid_g_usda
54.21
mfa_20_1_eicosenoic_acid_g_usda
0.38
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
50.28
mped_dairy_cheese_usda
1.01
mped_dairy_milk_usda
0.38
mped_dairy_total_usda
1.4
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
31.77
mped_discfat_sol_usda
80.74
mped_fruit_citmlb_usda
0.27
mped_fruit_other_usda
3.33
mped_fruit_total_usda
3.6
mped_grain_nwhl_usda
11.01
mped_grain_total_usda
11.78
mped_grain_whl_usda
0.77
mped_legumes_usda
0.06
mped_m_egg_usda
1.42
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.08
mped_m_frank_usda
2.67
mped_m_meat_usda
3.68
mped_m_mpf_usda
7.43
mped_m_nutsd_usda
2.28
mped_m_organ_usda
0.04
mped_m_poult_usda
0.97
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.11
mped_vegetable_drkgr_usda
0.3
mped_vegetable_other_usda
0.39
mped_vegetable_potato_usda
0.07
mped_vegetable_starcy_usda
0.24
mped_vegetable_tomato_usda
0.58
mped_vegetable_total_usda
1.7
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
34.96
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
23.85
pfa_18_3_octadecatrienoic_acig_g_usda
1.97
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.22
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.03
phosphorus_mg_usda
2014.41
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4006.53
probiotics_1wk
Yogurt
protein_g_usda
126.78
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
576.96
riboflavin_vitamin_b2_mg_usda
3.04
saa_ng_ml
31745.9778
sample name
qiita_sid_13338:13338.St.neg.GLD046
sample type
stool
scd14_pg_ml
1167172.347
scd163_ng_ml
1245.377352
selenium_mcg_usda
187.55
sfa_10_0_decanoic_acid_g_usda
0.78
sfa_12_0_dodecanoic_acid_g_usda
1.18
sfa_14_0_tetradecanoic_acid_g_usda
3.81
sfa_16_0_hexadecanoic_acid_g_usda
24.91
sfa_18_0_octadecanoic_acid_g_usda
11.91
sfa_4_0_butanoic_acid_g_usda
1.07
sfa_6_0_hexanoic_acid_g_usda
0.5
sfa_8_0_octanoic_acid_g_usda
0.4
sodium_mg_usda
6330.89
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.39
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1097.231571
tnf_beta_pg_ml
0.214665561
total_fat_g_usda
143
total_folate_mcg_usda
519.94
total_monounsaturated_fatty_acids_g_usda
57.59
total_polyunsaturated_fatty_acids_g_usda
26.67
total_saturated_fatty_acids_g_usda
46.03
total_sugars_g_usda
253.09
triglycerides
83
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
729.6449337
vegf_pg_ml
75.2194057
vitamin_a_rae_mcg_usda
830.53
vitamin_b12_mcg_usda
6.81
vitamin_b6_mg_usda
2.85
vitamin_c_mg_usda
237.68
vitamin_e_as_alpha_tocopherol_mg_usda
12.34
vitamin_k_mcg_usda
129.41
watery_diarrhea_24hr_new
NO
zinc_mg_usda
19.21