13338.St.neg.GLD126
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617106
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD126
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
8.6
alcohol_g_usda
19.11
alpha_carotene_mcg_usda
166.47
beta_carotene_mcg_usda
1550.36
beta_cryptoxanthin_mcg_usda
417.18
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
4
caffeine_mg_usda
170.37
calcium_mg_usda
834.31
carbohydrate_g_usda
258.39
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
212.76
cohort
HIV negative MSM
collection_timestamp
7/15/16
constipation_24hr_new
NO
copper_mg_usda
1.16
crp_ng_ml
169.3007377
decreased_stools_new
1
dietary_fiber_g_usda
15.41
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2064.83
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
603.78
folic_acid_mcg_usda
200.54
food_folate_mcg_usda
263.02
gender
male
gi_summary_score
1.285714286
glucose
90
gm_csf_pg_ml
0.045956123
gramwt_g_usda
2192.26
hard_stools_new
1
hdl
55
heartburn_new
2
hispanic
No
host age
32
host body habitat
colon
host body mass index
25.9
host body product
feces
host common name
human
host height
187
host scientific name
Homo sapiens
host subject id
HIV218
host taxid
9606
host weight
90.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
298.3125608
ifabp_pg_ml
1741.278
il_10_pg_ml
277.7789268
il_12_23p40_pg_ml
56.72834032
il_15_pg_ml
3.991132628
il_16_pg_ml
242.381029
il_17a_pg_ml
0.967040961
il_22_pg_ml
299.023359
il_6_pg_ml
237.9602227
il_7_pg_ml
8.841358327
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
insulin
4
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
15.08
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
9710.526316
ldl
94
leptin
6.6
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1967.29
lycopene_mcg_usda
5755.7
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
280.1
mcp_1_pg_ml
7131.261338
metab_disease_score_binary
LOW
metabolic_disease_score
0.947241225
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.29
mfa_18_1_octadecenoic_acid_g_usda
27.08
mfa_20_1_eicosenoic_acid_g_usda
0.2
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.37
mped_add_sug_usda
14.2
mped_dairy_cheese_usda
0.5
mped_dairy_milk_usda
0.89
mped_dairy_total_usda
1.45
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
16.54
mped_discfat_sol_usda
41.31
mped_fruit_citmlb_usda
1.29
mped_fruit_other_usda
0.88
mped_fruit_total_usda
2.16
mped_grain_nwhl_usda
5.29
mped_grain_total_usda
5.81
mped_grain_whl_usda
0.52
mped_legumes_usda
0.11
mped_m_egg_usda
0.17
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.33
mped_m_frank_usda
0.4
mped_m_meat_usda
2.17
mped_m_mpf_usda
3.78
mped_m_nutsd_usda
0.29
mped_m_organ_usda
0.01
mped_m_poult_usda
0.6
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.22
mped_vegetable_other_usda
0.51
mped_vegetable_potato_usda
0.2
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.31
mped_vegetable_total_usda
1.31
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
22.02
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.45
pfa_18_3_octadecatrienoic_acig_g_usda
1.15
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.1
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
1169.25
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2995.93
probiotics_1wk
No
protein_g_usda
70.33
race
Black/African American
rai_frequency_new
< 1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
479.15
riboflavin_vitamin_b2_mg_usda
2.28
saa_ng_ml
337.2910455
sample name
qiita_sid_13338:13338.St.neg.GLD126
sample type
stool
scd14_pg_ml
1375516.024
scd163_ng_ml
696.083315
selenium_mcg_usda
95.75
sfa_10_0_decanoic_acid_g_usda
0.49
sfa_12_0_dodecanoic_acid_g_usda
0.6
sfa_14_0_tetradecanoic_acid_g_usda
2.36
sfa_16_0_hexadecanoic_acid_g_usda
13.23
sfa_18_0_octadecanoic_acid_g_usda
5.87
sfa_4_0_butanoic_acid_g_usda
0.67
sfa_6_0_hexanoic_acid_g_usda
0.36
sfa_8_0_octanoic_acid_g_usda
0.24
sodium_mg_usda
2714.47
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.75
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
737.5919727
tnf_beta_pg_ml
0.239304419
total_fat_g_usda
72.59
total_folate_mcg_usda
463.91
total_monounsaturated_fatty_acids_g_usda
29.02
total_polyunsaturated_fatty_acids_g_usda
12.08
total_saturated_fatty_acids_g_usda
24.74
total_sugars_g_usda
128.13
triglycerides
54
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
484.7663063
vegf_pg_ml
33.01005121
vitamin_a_rae_mcg_usda
633.41
vitamin_b12_mcg_usda
5.25
vitamin_b6_mg_usda
2.16
vitamin_c_mg_usda
176.33
vitamin_e_as_alpha_tocopherol_mg_usda
7.22
vitamin_k_mcg_usda
117.91
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.88