13338.St.neg.GLD049
ENA-FIRST-PUBLIC
2021-04-17T00:26:13Z
ENA-LAST-UPDATE
2020-11-24T22:15:19Z
External Id
SAMEA7617085
INSDC center name
UCSDMI
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD049
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
9.5
alcohol_g_usda
25.06
alpha_carotene_mcg_usda
230.96
beta_carotene_mcg_usda
1169.58
beta_cryptoxanthin_mcg_usda
74.5
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
4
caffeine_mg_usda
7.84
calcium_mg_usda
435.99
carbohydrate_g_usda
108.33
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
62.21
cohort
HIV negative MSM
collection_timestamp
10/29/15
constipation_24hr_new
NO
copper_mg_usda
0.57
crp_ng_ml
20911.5664
decreased_stools_new
1
dietary_fiber_g_usda
7.24
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
963.64
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
304.12
folic_acid_mcg_usda
120.91
food_folate_mcg_usda
98.61
gender
male
gi_summary_score
1.142857143
glucose
76
gm_csf_pg_ml
0.219693509
gramwt_g_usda
1959.9
hard_stools_new
1
hdl
40
heartburn_new
1
hispanic
Yes
host age
30
host body habitat
colon
host body mass index
22.4
host body product
feces
host common name
human
host height
174
host scientific name
Homo sapiens
host subject id
HIV162
host taxid
9606
host weight
67.7
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
328.8535192
ifabp_pg_ml
652.089
il_10_pg_ml
273.3112913
il_12_23p40_pg_ml
132.1524955
il_15_pg_ml
3.665459821
il_16_pg_ml
191.6517709
il_17a_pg_ml
31.77602232
il_22_pg_ml
406.0343493
il_6_pg_ml
613.8754632
il_7_pg_ml
35.42291766
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
12
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
7.66
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14466.16541
ldl
109
leptin
3.4
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1052.21
lycopene_mcg_usda
2275.85
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
120.62
mcp_1_pg_ml
8424.011254
metab_disease_score_binary
HIGH
metabolic_disease_score
1.45228475
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.49
mfa_18_1_octadecenoic_acid_g_usda
12.39
mfa_20_1_eicosenoic_acid_g_usda
0.07
mfa_22_1_docosenoic_acid_g_usda
0
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.77
mped_add_sug_usda
7.32
mped_dairy_cheese_usda
0.18
mped_dairy_milk_usda
0.25
mped_dairy_total_usda
0.48
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
10.03
mped_discfat_sol_usda
13.32
mped_fruit_citmlb_usda
0.22
mped_fruit_other_usda
0.58
mped_fruit_total_usda
0.8
mped_grain_nwhl_usda
1.77
mped_grain_total_usda
2.18
mped_grain_whl_usda
0.42
mped_legumes_usda
0.01
mped_m_egg_usda
0.03
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.03
mped_m_frank_usda
0.31
mped_m_meat_usda
1.06
mped_m_mpf_usda
1.57
mped_m_nutsd_usda
0.15
mped_m_organ_usda
0
mped_m_poult_usda
0.17
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.04
mped_vegetable_drkgr_usda
0.11
mped_vegetable_other_usda
0.21
mped_vegetable_potato_usda
0.12
mped_vegetable_starcy_usda
0.11
mped_vegetable_tomato_usda
0.14
mped_vegetable_total_usda
0.73
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
11.21
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
4.95
pfa_18_3_octadecatrienoic_acig_g_usda
0.5
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.03
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0
phosphorus_mg_usda
435.75
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
1016.8
probiotics_1wk
No
protein_g_usda
25.76
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
158.73
riboflavin_vitamin_b2_mg_usda
0.94
saa_ng_ml
20095.24145
sample name
qiita_sid_13338:13338.St.neg.GLD049
sample type
stool
scd14_pg_ml
1396639.576
scd163_ng_ml
612.8912848
scientific_name
gut metagenome
selenium_mcg_usda
32.66
sfa_10_0_decanoic_acid_g_usda
0.16
sfa_12_0_dodecanoic_acid_g_usda
0.46
sfa_14_0_tetradecanoic_acid_g_usda
0.79
sfa_16_0_hexadecanoic_acid_g_usda
4.98
sfa_18_0_octadecanoic_acid_g_usda
2.14
sfa_4_0_butanoic_acid_g_usda
0.17
sfa_6_0_hexanoic_acid_g_usda
0.09
sfa_8_0_octanoic_acid_g_usda
0.11
sodium_mg_usda
1167.75
statins_1mo
No
thiamin_vitamin_b1_mg_usda
0.83
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
713.3644629
tnf_beta_pg_ml
0.958270176
total_fat_g_usda
30.07
total_folate_mcg_usda
219.53
total_monounsaturated_fatty_acids_g_usda
13.08
total_polyunsaturated_fatty_acids_g_usda
5.52
total_saturated_fatty_acids_g_usda
9.21
total_sugars_g_usda
52.31
triglycerides
209
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
447.9257838
vegf_pg_ml
50.76340026
vitamin_a_rae_mcg_usda
269.3
vitamin_b12_mcg_usda
2.58
vitamin_b6_mg_usda
1.1
vitamin_c_mg_usda
50.15
vitamin_e_as_alpha_tocopherol_mg_usda
4.03
vitamin_k_mcg_usda
58.18
watery_diarrhea_24hr_new
NO
zinc_mg_usda
5.61