13338.St.chronic.GLD106.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617042
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD106.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
not collected
acid_regurgitation_new
1
adiponectin
5.6
alcohol_g_usda
15.62
alpha_carotene_mcg_usda
1568.12
art_years
27
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
5386.86
beta_cryptoxanthin_mcg_usda
184.46
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
932.8
calcium_mg_usda
2092.33
carbohydrate_g_usda
498.64
cd4_cd38_single_positive_cells
11
cd4_count
599
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
2
cd4_nadir
4
cd4_percent
26
cd8_cd38_single_positive_cells
12
cd8_count
1360
cd8_hladr_cd38_percent
3
cd8_hladr_single_positive_cells
6
cd8_percent
59
cholesterol_drugs_1mo
No
cholesterol_mg_usda
521.3
cohort
HIV treated LD
collection_timestamp
4/12/16
constipation_24hr_new
NO
copper_mg_usda
3.18
crp_ng_ml
813.1929256
current_art
truvada, isentress, intelence, ritonavir, darunavir
current_art_start_date
1/1/11
decreased_stools_new
1
dietary_fiber_g_usda
45.08
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
4772.83
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1379.65
folic_acid_mcg_usda
507.75
food_folate_mcg_usda
516.39
gender
male
gi_summary_score
1.214285714
glucose
89
gm_csf_pg_ml
0.439542592
gramwt_g_usda
6329.32
hard_stools_new
1
hdl
50
heartburn_new
1
hispanic
No
host age
57
host body habitat
colon
host body mass index
23.8
host body product
feces
host common name
human
host height
183.5
host scientific name
Homo sapiens
host subject id
HIV203
host taxid
9606
host weight
80.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
423.0950348
ifabp_pg_ml
2770.422
il_10_pg_ml
196.6117674
il_12_23p40_pg_ml
102.8705216
il_15_pg_ml
3.270781016
il_16_pg_ml
329.7471576
il_17a_pg_ml
3.480119937
il_22_pg_ml
255.3081851
il_6_pg_ml
424.4668073
il_7_pg_ml
12.14263007
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
2
initial_art_start_date
1989
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
42.23
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
4595.744681
ldl
81
leptin
1.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
2873.03
lycopene_mcg_usda
8957.38
lymphocyte_count
2305
lymphocyte_percent
46.1
magnesium_mg_usda
876.23
mcp_1_pg_ml
12196.88472
metab_disease_score_binary
LOW
metabolic_disease_score
1.058409408
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
2.63
mfa_18_1_octadecenoic_acid_g_usda
89.63
mfa_20_1_eicosenoic_acid_g_usda
1.18
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
1.06
mped_add_sug_usda
23.39
mped_dairy_cheese_usda
1.62
mped_dairy_milk_usda
2.97
mped_dairy_total_usda
4.7
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
72.57
mped_discfat_sol_usda
104.75
mped_fruit_citmlb_usda
0.54
mped_fruit_other_usda
1.15
mped_fruit_total_usda
1.69
mped_grain_nwhl_usda
8.27
mped_grain_total_usda
11.06
mped_grain_whl_usda
2.79
mped_legumes_usda
0.09
mped_m_egg_usda
0.72
mped_m_fish_hi_usda
0.17
mped_m_fish_lo_usda
0.55
mped_m_frank_usda
2.28
mped_m_meat_usda
2.83
mped_m_mpf_usda
6.68
mped_m_nutsd_usda
9.73
mped_m_organ_usda
0.01
mped_m_poult_usda
0.83
mped_m_soy_usda
0.04
mped_vegetable_dpyel_usda
0.32
mped_vegetable_drkgr_usda
0.18
mped_vegetable_other_usda
0.81
mped_vegetable_potato_usda
1.45
mped_vegetable_starcy_usda
0.39
mped_vegetable_tomato_usda
0.61
mped_vegetable_total_usda
3.77
nadir_date
1/1/94
nadir_report
Patient report
nadir_years
22.28
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
66.29
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
41.3
pfa_18_3_octadecatrienoic_acig_g_usda
2.35
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
3374.56
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
7566
probiotics_1wk
No
protein_g_usda
184.2
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
1169.61
riboflavin_vitamin_b2_mg_usda
6.39
saa_ng_ml
3332.146566
sample name
qiita_sid_13338:13338.St.chronic.GLD106.T
sample type
stool
scd14_pg_ml
1705942.236
scd163_ng_ml
671.1401396
selenium_mcg_usda
190.4
sfa_10_0_decanoic_acid_g_usda
1.35
sfa_12_0_dodecanoic_acid_g_usda
1.91
sfa_14_0_tetradecanoic_acid_g_usda
6.17
sfa_16_0_hexadecanoic_acid_g_usda
38.83
sfa_18_0_octadecanoic_acid_g_usda
16.39
sfa_4_0_butanoic_acid_g_usda
1.9
sfa_6_0_hexanoic_acid_g_usda
1
sfa_8_0_octanoic_acid_g_usda
0.66
sodium_mg_usda
7139.14
statin_type
pitavastatin/placebo
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
4.05
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
757.9575334
tnf_beta_pg_ml
0.239191578
total_fat_g_usda
232.54
total_folate_mcg_usda
1023.9
total_monounsaturated_fatty_acids_g_usda
94.43
total_polyunsaturated_fatty_acids_g_usda
44.38
total_saturated_fatty_acids_g_usda
72.96
total_sugars_g_usda
201.86
triglycerides
77
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
540.0063946
vegf_pg_ml
59.62735739
viral load
0
vitamin_a_rae_mcg_usda
1690.43
vitamin_b12_mcg_usda
13.44
vitamin_b6_mg_usda
5.27
vitamin_c_mg_usda
136.94
vitamin_e_as_alpha_tocopherol_mg_usda
25.78
vitamin_k_mcg_usda
167.06
watery_diarrhea_24hr_new
NO
zinc_mg_usda
29.76