13338.St.neg.DM058.1
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617071
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:18Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.DM058.1
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
12.9
alcohol_g_usda
11.91
alpha_carotene_mcg_usda
1099.91
beta_carotene_mcg_usda
7508.63
beta_cryptoxanthin_mcg_usda
161.16
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
509.65
calcium_mg_usda
1290.44
carbohydrate_g_usda
315.78
cd4_cd38_single_positive_cells
82
cd4_count
not collected
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_percent
not collected
cd8_cd38_single_positive_cells
26
cd8_count
not collected
cd8_hladr_cd38_percent
4
cd8_hladr_single_positive_cells
4
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
269.45
cohort
HIV negative MSW
collection_timestamp
8/24/17
constipation_24hr_new
NO
copper_mg_usda
2.09
crp_ng_ml
320.2173438
decreased_stools_new
1
dietary_fiber_g_usda
30.45
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2713.39
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
891.95
folic_acid_mcg_usda
276.64
food_folate_mcg_usda
421.82
gender
male
gi_summary_score
1.428571429
glucose
83
gm_csf_pg_ml
0.289257482
gramwt_g_usda
5755.27
hard_stools_new
1
hdl
62
heartburn_new
1
hispanic
No
host age
30
host body habitat
colon
host body mass index
21.5
host body product
feces
host common name
human
host height
174
host scientific name
Homo sapiens
host subject id
HIV286
host taxid
9606
host weight
65.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
309.7781763
ifabp_pg_ml
2200.254
il_10_pg_ml
230.9500828
il_12_23p40_pg_ml
153.1496561
il_15_pg_ml
5.231741721
il_16_pg_ml
303.672126
il_17a_pg_ml
3.188741682
il_22_pg_ml
360.1098536
il_6_pg_ml
301.1611027
il_7_pg_ml
10.46425601
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
24.3
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
7940.898345
ldl
63
leptin
9.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
7654.77
lycopene_mcg_usda
6832.13
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
514.83
mcp_1_pg_ml
11369.03718
metab_disease_score_binary
LOW
metabolic_disease_score
0.659405582
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.54
mfa_18_1_octadecenoic_acid_g_usda
42.93
mfa_20_1_eicosenoic_acid_g_usda
0.34
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.92
mped_add_sug_usda
13.61
mped_dairy_cheese_usda
0.98
mped_dairy_milk_usda
0.69
mped_dairy_total_usda
1.89
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
34.78
mped_discfat_sol_usda
55.18
mped_fruit_citmlb_usda
0.47
mped_fruit_other_usda
1.08
mped_fruit_total_usda
1.54
mped_grain_nwhl_usda
7.28
mped_grain_total_usda
8.6
mped_grain_whl_usda
1.32
mped_legumes_usda
0.18
mped_m_egg_usda
0.37
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.32
mped_m_frank_usda
0.7
mped_m_meat_usda
2.09
mped_m_mpf_usda
4.31
mped_m_nutsd_usda
2.17
mped_m_organ_usda
0
mped_m_poult_usda
0.94
mped_m_soy_usda
0.11
mped_vegetable_dpyel_usda
0.25
mped_vegetable_drkgr_usda
0.56
mped_vegetable_other_usda
0.94
mped_vegetable_potato_usda
0.43
mped_vegetable_starcy_usda
0.47
mped_vegetable_tomato_usda
0.38
mped_vegetable_total_usda
3.03
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
34.37
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
21.5
pfa_18_3_octadecatrienoic_acig_g_usda
2.05
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0.05
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.09
phosphorus_mg_usda
1768.27
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
4278.78
probiotics_1wk
not collected
protein_g_usda
99.58
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
567.72
riboflavin_vitamin_b2_mg_usda
3.58
saa_ng_ml
3115.677931
sample name
qiita_sid_13338:13338.St.neg.DM058.1
sample type
stool
scd14_pg_ml
1449809.266
scd163_ng_ml
545.5698526
selenium_mcg_usda
130.29
sfa_10_0_decanoic_acid_g_usda
0.57
sfa_12_0_dodecanoic_acid_g_usda
1.09
sfa_14_0_tetradecanoic_acid_g_usda
2.86
sfa_16_0_hexadecanoic_acid_g_usda
18.61
sfa_18_0_octadecanoic_acid_g_usda
8.46
sfa_4_0_butanoic_acid_g_usda
0.7
sfa_6_0_hexanoic_acid_g_usda
0.38
sfa_8_0_octanoic_acid_g_usda
0.36
sodium_mg_usda
4507.89
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.41
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
588.8780223
tnf_beta_pg_ml
0.203189479
total_fat_g_usda
115.5
total_folate_mcg_usda
699.33
total_monounsaturated_fatty_acids_g_usda
45.59
total_polyunsaturated_fatty_acids_g_usda
24.16
total_saturated_fatty_acids_g_usda
34.27
total_sugars_g_usda
109.67
triglycerides
61
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
489.59769
vegf_pg_ml
48.13011583
vitamin_a_rae_mcg_usda
1246.35
vitamin_b12_mcg_usda
6.41
vitamin_b6_mg_usda
2.98
vitamin_c_mg_usda
129
vitamin_e_as_alpha_tocopherol_mg_usda
12.84
vitamin_k_mcg_usda
388.27
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.74