13338.St.neg.GLD061
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617089
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD061
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
4.6
alcohol_g_usda
2.16
alpha_carotene_mcg_usda
130.31
beta_carotene_mcg_usda
333.98
beta_cryptoxanthin_mcg_usda
177.16
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
not collected
caffeine_mg_usda
64.48
calcium_mg_usda
425.36
carbohydrate_g_usda
179.89
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
40.03
cohort
HIV negative MSW
collection_timestamp
12/23/15
constipation_24hr_new
NO
copper_mg_usda
2
crp_ng_ml
1407.921799
decreased_stools_new
2
dietary_fiber_g_usda
18.45
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1634.93
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
361.98
folic_acid_mcg_usda
81.01
food_folate_mcg_usda
224.19
gender
male
gi_summary_score
1.357142857
glucose
83
gm_csf_pg_ml
0.126360635
gramwt_g_usda
1838.67
hard_stools_new
1
hdl
48
heartburn_new
2
hispanic
Yes
host age
59
host body habitat
colon
host body mass index
24.9
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV172
host taxid
9606
host weight
74.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
263.3894871
ifabp_pg_ml
1225.964
il_10_pg_ml
245.3890704
il_12_23p40_pg_ml
89.81283415
il_15_pg_ml
6.291197481
il_16_pg_ml
376.0980492
il_17a_pg_ml
1.019429191
il_22_pg_ml
299.7349685
il_6_pg_ml
334.3721377
il_7_pg_ml
20.20157022
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
insulin
10
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
10.05
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
10155.40541
ldl
127
leptin
8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
420.29
lycopene_mcg_usda
1177.2
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
382.28
mcp_1_pg_ml
11141.69277
metab_disease_score_binary
HIGH
metabolic_disease_score
1.442464583
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.61
mfa_18_1_octadecenoic_acid_g_usda
38.93
mfa_20_1_eicosenoic_acid_g_usda
0.52
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.16
mped_add_sug_usda
7.69
mped_dairy_cheese_usda
0.49
mped_dairy_milk_usda
0.07
mped_dairy_total_usda
0.56
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
43.66
mped_discfat_sol_usda
17.26
mped_fruit_citmlb_usda
0.55
mped_fruit_other_usda
1.07
mped_fruit_total_usda
1.62
mped_grain_nwhl_usda
3.58
mped_grain_total_usda
4.02
mped_grain_whl_usda
0.44
mped_legumes_usda
0.01
mped_m_egg_usda
0.01
mped_m_fish_hi_usda
0.02
mped_m_fish_lo_usda
0.08
mped_m_frank_usda
0.23
mped_m_meat_usda
0.32
mped_m_mpf_usda
0.72
mped_m_nutsd_usda
8.33
mped_m_organ_usda
0
mped_m_poult_usda
0.07
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0
mped_vegetable_other_usda
0.04
mped_vegetable_potato_usda
0.35
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.1
mped_vegetable_total_usda
0.53
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
17.78
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
21.69
pfa_18_3_octadecatrienoic_acig_g_usda
0.97
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.03
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.01
phosphorus_mg_usda
986.62
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2225.15
probiotics_1wk
No
protein_g_usda
50.11
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
69.73
riboflavin_vitamin_b2_mg_usda
0.96
saa_ng_ml
2134.47564
sample name
qiita_sid_13338:13338.St.neg.GLD061
sample type
stool
scd14_pg_ml
1126963.539
scd163_ng_ml
616.4155664
selenium_mcg_usda
94.46
sfa_10_0_decanoic_acid_g_usda
0.18
sfa_12_0_dodecanoic_acid_g_usda
0.36
sfa_14_0_tetradecanoic_acid_g_usda
0.87
sfa_16_0_hexadecanoic_acid_g_usda
9.9
sfa_18_0_octadecanoic_acid_g_usda
4.27
sfa_4_0_butanoic_acid_g_usda
0.23
sfa_6_0_hexanoic_acid_g_usda
0.1
sfa_8_0_octanoic_acid_g_usda
0.11
sodium_mg_usda
1763.67
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.05
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
725.1956733
tnf_beta_pg_ml
0.172525391
total_fat_g_usda
85.49
total_folate_mcg_usda
305.1
total_monounsaturated_fatty_acids_g_usda
40.42
total_polyunsaturated_fatty_acids_g_usda
22.79
total_saturated_fatty_acids_g_usda
17.27
total_sugars_g_usda
66.34
triglycerides
207
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
352.5260431
vegf_pg_ml
53.31062767
vitamin_a_rae_mcg_usda
110.37
vitamin_b12_mcg_usda
0.91
vitamin_b6_mg_usda
1.37
vitamin_c_mg_usda
72.86
vitamin_e_as_alpha_tocopherol_mg_usda
12.5
vitamin_k_mcg_usda
26.43
watery_diarrhea_24hr_new
NO
zinc_mg_usda
8.04