13338.St.chronic.GLD112.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617043
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD112.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
4
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
428.34
art_years
21
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
5704.8
beta_cryptoxanthin_mcg_usda
114.68
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
2
caffeine_mg_usda
525.27
calcium_mg_usda
847.42
carbohydrate_g_usda
207.34
cd4_cd38_single_positive_cells
62
cd4_count
385
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
2
cd4_nadir
190
cd4_percent
33
cd8_cd38_single_positive_cells
45
cd8_count
385
cd8_hladr_cd38_percent
6
cd8_hladr_single_positive_cells
2
cd8_percent
33
cholesterol_drugs_1mo
No
cholesterol_mg_usda
503.77
cohort
HIV treated
collection_timestamp
5/10/16
constipation_24hr_new
NO
copper_mg_usda
3.01
crp_ng_ml
5270.05748
current_art
viramune & truvada
current_art_start_date
1/1/05
decreased_stools_new
1
dietary_fiber_g_usda
19.21
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1800.2
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
555.77
folic_acid_mcg_usda
115.35
food_folate_mcg_usda
359.76
gender
male
gi_summary_score
1.428571429
glucose
95
gm_csf_pg_ml
0.242793825
gramwt_g_usda
4319.78
hard_stools_new
2
hdl
51
heartburn_new
1
hispanic
No
host age
63
host body habitat
colon
host body mass index
25.8
host body product
feces
host common name
human
host height
184
host scientific name
Homo sapiens
host subject id
HIV207
host taxid
9606
host weight
87.3
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
484.5331873
ifabp_pg_ml
4830.643
il_10_pg_ml
238.0914488
il_12_23p40_pg_ml
100.5596668
il_15_pg_ml
5.598189716
il_16_pg_ml
262.3320231
il_17a_pg_ml
2.662448799
il_22_pg_ml
267.6564932
il_6_pg_ml
547.5420781
il_7_pg_ml
12.5556686
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1995
insulin
6
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
15.1
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
13898.34515
ldl
73
leptin
6.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
6529.71
lycopene_mcg_usda
6350.23
lymphocyte_count
1165.8
lymphocyte_percent
18.5
magnesium_mg_usda
325.7
mcp_1_pg_ml
7969.815683
metab_disease_score_binary
LOW
metabolic_disease_score
1.075728439
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.23
mfa_18_1_octadecenoic_acid_g_usda
25.78
mfa_20_1_eicosenoic_acid_g_usda
0.19
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
6.64
mped_dairy_cheese_usda
0.5
mped_dairy_milk_usda
0.29
mped_dairy_total_usda
1.14
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
18.8
mped_discfat_sol_usda
43.04
mped_fruit_citmlb_usda
0.1
mped_fruit_other_usda
1.38
mped_fruit_total_usda
1.49
mped_grain_nwhl_usda
4.25
mped_grain_total_usda
5.06
mped_grain_whl_usda
0.81
mped_legumes_usda
0.1
mped_m_egg_usda
1.5
mped_m_fish_hi_usda
0.09
mped_m_fish_lo_usda
0.27
mped_m_frank_usda
0.24
mped_m_meat_usda
1.25
mped_m_mpf_usda
3.11
mped_m_nutsd_usda
0.88
mped_m_organ_usda
0.4
mped_m_poult_usda
0.86
mped_m_soy_usda
0.16
mped_vegetable_dpyel_usda
0.1
mped_vegetable_drkgr_usda
0.78
mped_vegetable_other_usda
0.93
mped_vegetable_potato_usda
0.23
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
0.61
mped_vegetable_total_usda
2.69
nadir_date
not collected
nadir_report
Patient report
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
21.97
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
15.09
pfa_18_3_octadecatrienoic_acig_g_usda
1.71
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.19
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.07
phosphorus_mg_usda
1247.21
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3504.49
probiotics_1wk
No
protein_g_usda
73.62
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1366.67
riboflavin_vitamin_b2_mg_usda
3.13
saa_ng_ml
12531.19858
sample name
qiita_sid_13338:13338.St.chronic.GLD112.T
sample type
stool
scd14_pg_ml
1722856.678
scd163_ng_ml
881.6355946
selenium_mcg_usda
101.97
sfa_10_0_decanoic_acid_g_usda
0.56
sfa_12_0_dodecanoic_acid_g_usda
0.84
sfa_14_0_tetradecanoic_acid_g_usda
2.45
sfa_16_0_hexadecanoic_acid_g_usda
14.08
sfa_18_0_octadecanoic_acid_g_usda
6.27
sfa_4_0_butanoic_acid_g_usda
0.72
sfa_6_0_hexanoic_acid_g_usda
0.4
sfa_8_0_octanoic_acid_g_usda
0.3
sodium_mg_usda
3094.09
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.44
three_male_mtf_partners_anal_intercourse_6mo_new
Yes
tnf_alpha_pg_ml
727.5807771
tnf_beta_pg_ml
0.237086241
total_fat_g_usda
81.4
total_folate_mcg_usda
475.07
total_monounsaturated_fatty_acids_g_usda
27.65
total_polyunsaturated_fatty_acids_g_usda
17.21
total_saturated_fatty_acids_g_usda
26.51
total_sugars_g_usda
92.75
triglycerides
51
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
748.289053
vegf_pg_ml
65.07949531
viral load
0
vitamin_a_rae_mcg_usda
1864.98
vitamin_b12_mcg_usda
13.07
vitamin_b6_mg_usda
2.08
vitamin_c_mg_usda
99.89
vitamin_e_as_alpha_tocopherol_mg_usda
8.37
vitamin_k_mcg_usda
340.22
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.24