13338.St.chronic.GLD167.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617060
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:17Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD167.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
13.7
alcohol_g_usda
66.18
alpha_carotene_mcg_usda
95.46
art_years
12
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
YES
arv_pi
YES
beta_carotene_mcg_usda
1309.07
beta_cryptoxanthin_mcg_usda
199.21
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
587.92
calcium_mg_usda
994.16
carbohydrate_g_usda
385.96
cd4_cd38_single_positive_cells
27
cd4_count
104
cd4_hladr_cd38_percent
24
cd4_hladr_single_positive_cells
16
cd4_nadir
94
cd4_percent
14
cd8_cd38_single_positive_cells
18
cd8_count
467
cd8_hladr_cd38_percent
17
cd8_hladr_single_positive_cells
17
cd8_percent
63
cholesterol_drugs_1mo
No
cholesterol_mg_usda
487.44
cohort
HIV treated LD
collection_timestamp
10/17/17
constipation_24hr_new
NO
copper_mg_usda
1.25
crp_ng_ml
1783.546837
current_art
genvoya, darunavir
current_art_start_date
1/1/16
decreased_stools_new
1
dietary_fiber_g_usda
11.41
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3143.49
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
461.14
folic_acid_mcg_usda
87.32
food_folate_mcg_usda
312.6
gender
male
gi_summary_score
1.214285714
glucose
58
gm_csf_pg_ml
0.187501266
gramwt_g_usda
5377.3
hard_stools_new
1
hdl
40
heartburn_new
1
hispanic
No
host age
48
host body habitat
colon
host body mass index
19.8
host body product
feces
host common name
human
host height
169
host scientific name
Homo sapiens
host subject id
HIV043
host taxid
9606
host weight
55.3
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
656.1295096
ifabp_pg_ml
2363.228
il_10_pg_ml
238.3494723
il_12_23p40_pg_ml
93.02452047
il_15_pg_ml
5.661655972
il_16_pg_ml
421.5178357
il_17a_pg_ml
1.929580406
il_22_pg_ml
980.3695242
il_6_pg_ml
438.180346
il_7_pg_ml
16.04318507
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
2005
insulin
5
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
11.69
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
6515.037594
ldl
72
leptin
7
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1433.63
lycopene_mcg_usda
3724.04
lymphocyte_count
742.4
lymphocyte_percent
25.6
magnesium_mg_usda
339.81
mcp_1_pg_ml
7225.452663
metab_disease_score_binary
LOW
metabolic_disease_score
0.905994628
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.62
mfa_18_1_octadecenoic_acid_g_usda
31.46
mfa_20_1_eicosenoic_acid_g_usda
0.25
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
5.19
mped_add_sug_usda
53.09
mped_dairy_cheese_usda
0.95
mped_dairy_milk_usda
0.26
mped_dairy_total_usda
1.21
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
17.83
mped_discfat_sol_usda
64.91
mped_fruit_citmlb_usda
0.57
mped_fruit_other_usda
0.08
mped_fruit_total_usda
0.65
mped_grain_nwhl_usda
3.96
mped_grain_total_usda
4.7
mped_grain_whl_usda
0.75
mped_legumes_usda
0.04
mped_m_egg_usda
1.49
mped_m_fish_hi_usda
0.08
mped_m_fish_lo_usda
0.17
mped_m_frank_usda
0.24
mped_m_meat_usda
1.68
mped_m_mpf_usda
2.35
mped_m_nutsd_usda
0.74
mped_m_organ_usda
0
mped_m_poult_usda
0.17
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.01
mped_vegetable_drkgr_usda
0.14
mped_vegetable_other_usda
0.49
mped_vegetable_potato_usda
0.3
mped_vegetable_starcy_usda
0.02
mped_vegetable_tomato_usda
0.42
mped_vegetable_total_usda
1.37
nadir_date
not collected
nadir_report
Patient report
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
39.38
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.9
pfa_18_3_octadecatrienoic_acig_g_usda
1.38
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.18
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.05
phosphorus_mg_usda
1370.03
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2979.67
probiotics_1wk
No
protein_g_usda
74.22
race
Black/African American
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
434.66
riboflavin_vitamin_b2_mg_usda
3.6
saa_ng_ml
4545.976733
sample name
qiita_sid_13338:13338.St.chronic.GLD167.T
sample type
stool
scd14_pg_ml
1461252.795
scd163_ng_ml
854.6681226
selenium_mcg_usda
108.96
sfa_10_0_decanoic_acid_g_usda
0.84
sfa_12_0_dodecanoic_acid_g_usda
1.4
sfa_14_0_tetradecanoic_acid_g_usda
3.71
sfa_16_0_hexadecanoic_acid_g_usda
19.36
sfa_18_0_octadecanoic_acid_g_usda
9.71
sfa_4_0_butanoic_acid_g_usda
1.12
sfa_6_0_hexanoic_acid_g_usda
0.6
sfa_8_0_octanoic_acid_g_usda
0.45
sodium_mg_usda
3324.39
statin_type
pitavastatin / p
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.36
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
712.3000623
tnf_beta_pg_ml
0.167622199
total_fat_g_usda
99.12
total_folate_mcg_usda
399.9
total_monounsaturated_fatty_acids_g_usda
34.38
total_polyunsaturated_fatty_acids_g_usda
15.31
total_saturated_fatty_acids_g_usda
38.29
total_sugars_g_usda
242.32
triglycerides
69
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
651.2216347
vegf_pg_ml
84.86547034
viral load
50
vitamin_a_rae_mcg_usda
556.44
vitamin_b12_mcg_usda
7.16
vitamin_b6_mg_usda
3.61
vitamin_c_mg_usda
74.14
vitamin_e_as_alpha_tocopherol_mg_usda
6.23
vitamin_k_mcg_usda
84.19
watery_diarrhea_24hr_new
NO
zinc_mg_usda
9.79