13338.St.chronic.GLD156.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617057
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD156.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
172.94
art_years
20
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
4342.23
beta_cryptoxanthin_mcg_usda
76.07
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6
caffeine_mg_usda
236.89
calcium_mg_usda
742.34
carbohydrate_g_usda
207.57
cd4_cd38_single_positive_cells
52
cd4_count
359
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_nadir
186
cd4_percent
30
cd8_cd38_single_positive_cells
77
cd8_count
779
cd8_hladr_cd38_percent
13
cd8_hladr_single_positive_cells
0
cd8_percent
65
cholesterol_drugs_1mo
No
cholesterol_mg_usda
287.05
cohort
HIV treated LD
collection_timestamp
5/3/17
constipation_24hr_new
NO
copper_mg_usda
1.14
crp_ng_ml
12409.34144
current_art
Tivicay, Descovy
current_art_start_date
11/1/16
decreased_stools_new
1
dietary_fiber_g_usda
13.89
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1654.17
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
455.96
folic_acid_mcg_usda
102.93
food_folate_mcg_usda
281.07
gender
male
gi_summary_score
1.714285714
glucose
101
gm_csf_pg_ml
0.683308072
gramwt_g_usda
2912.95
hard_stools_new
1
hdl
25
heartburn_new
2
hispanic
No
host age
67
host body habitat
colon
host body mass index
20
host body product
feces
host common name
human
host height
170
host scientific name
Homo sapiens
host subject id
HIV277
host taxid
9606
host weight
57.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
1131.669709
ifabp_pg_ml
772.822
il_10_pg_ml
344.5917878
il_12_23p40_pg_ml
786.1225461
il_15_pg_ml
6.578331829
il_16_pg_ml
465.782975
il_17a_pg_ml
12.91752517
il_22_pg_ml
132.766324
il_6_pg_ml
625.3680884
il_7_pg_ml
8.328948457
incomplete_evacuation_new
1
increased_flatus_new
3
increased_stools_new
3
initial_art_start_date
1997
insulin
6
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
11.89
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
13153.6643
ldl
36
leptin
3.4
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
5998.95
lycopene_mcg_usda
4656.2
lymphocyte_count
1197
lymphocyte_percent
9
magnesium_mg_usda
251.31
mcp_1_pg_ml
4137.322005
metab_disease_score_binary
HIGH
metabolic_disease_score
1.565067045
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.02
mfa_18_1_octadecenoic_acid_g_usda
23
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
13.99
mped_dairy_cheese_usda
0.41
mped_dairy_milk_usda
0.71
mped_dairy_total_usda
1.22
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
11.28
mped_discfat_sol_usda
46.99
mped_fruit_citmlb_usda
0.39
mped_fruit_other_usda
0.8
mped_fruit_total_usda
1.19
mped_grain_nwhl_usda
4.81
mped_grain_total_usda
5.2
mped_grain_whl_usda
0.39
mped_legumes_usda
0.08
mped_m_egg_usda
0.63
mped_m_fish_hi_usda
0.1
mped_m_fish_lo_usda
0.54
mped_m_frank_usda
0.38
mped_m_meat_usda
1.04
mped_m_mpf_usda
2.7
mped_m_nutsd_usda
0.22
mped_m_organ_usda
0
mped_m_poult_usda
0.63
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.03
mped_vegetable_drkgr_usda
0.35
mped_vegetable_other_usda
0.79
mped_vegetable_potato_usda
0.24
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.31
mped_vegetable_total_usda
1.79
nadir_date
1/1/97
nadir_report
Patient report
nadir_years
20.33
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
14.01
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
10.67
pfa_18_3_octadecatrienoic_acig_g_usda
1.4
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.1
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
982.62
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2707.24
probiotics_1wk
no
protein_g_usda
58.32
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
355.83
riboflavin_vitamin_b2_mg_usda
1.79
saa_ng_ml
25320.19673
sample name
qiita_sid_13338:13338.St.chronic.GLD156.T
sample type
stool
scd14_pg_ml
292378.202
scd163_ng_ml
1653.562412
selenium_mcg_usda
80.24
sfa_10_0_decanoic_acid_g_usda
0.64
sfa_12_0_dodecanoic_acid_g_usda
1.64
sfa_14_0_tetradecanoic_acid_g_usda
2.91
sfa_16_0_hexadecanoic_acid_g_usda
13.02
sfa_18_0_octadecanoic_acid_g_usda
6.55
sfa_4_0_butanoic_acid_g_usda
0.7
sfa_6_0_hexanoic_acid_g_usda
0.41
sfa_8_0_octanoic_acid_g_usda
0.38
sodium_mg_usda
2518.72
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.14
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
1524.272865
tnf_beta_pg_ml
0.506169745
total_fat_g_usda
69.19
total_folate_mcg_usda
383.85
total_monounsaturated_fatty_acids_g_usda
24.43
total_polyunsaturated_fatty_acids_g_usda
12.44
total_saturated_fatty_acids_g_usda
26.84
total_sugars_g_usda
103.05
triglycerides
187
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
3
vcam_1_ng_ml
1598.737315
vegf_pg_ml
357.6976059
viral load
0
vitamin_a_rae_mcg_usda
728
vitamin_b12_mcg_usda
3.42
vitamin_b6_mg_usda
1.16
vitamin_c_mg_usda
79.4
vitamin_e_as_alpha_tocopherol_mg_usda
5.97
vitamin_k_mcg_usda
302.85
watery_diarrhea_24hr_new
NO
zinc_mg_usda
8.27