13338.St.chronic.GLD004.U
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617012
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:11Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD004.U
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
azithromycin, rocephin
acid_regurgitation_new
2
adiponectin
5.3
alcohol_g_usda
3.44
alpha_carotene_mcg_usda
178.89
beta_carotene_mcg_usda
1070.65
beta_cryptoxanthin_mcg_usda
111.4
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
not collected
caffeine_mg_usda
637.89
calcium_mg_usda
993.19
carbohydrate_g_usda
394.83
cd4_cd38_single_positive_cells
79
cd4_count
322
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
0
cd4_nadir
426
cd4_percent
25
cd8_cd38_single_positive_cells
82
cd8_count
554
cd8_hladr_cd38_percent
14
cd8_hladr_single_positive_cells
0
cd8_percent
43
cholesterol_drugs_1mo
No
cholesterol_mg_usda
229.03
cohort
HIV untreated
collection_timestamp
11/7/14
constipation_24hr_new
NO
copper_mg_usda
1.56
crp_ng_ml
486.9719055
decreased_stools_new
1
dietary_fiber_g_usda
16.9
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2813.61
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
799.85
folic_acid_mcg_usda
358.83
food_folate_mcg_usda
189.57
gender
male
gi_summary_score
1.428571429
glucose
84
gm_csf_pg_ml
1.377500513
gramwt_g_usda
7652.72
hard_stools_new
1
hdl
39
heartburn_new
1
hispanic
Yes
host age
23
host body habitat
colon
host body mass index
15.9
host body product
feces
host common name
human
host height
170
host scientific name
Homo sapiens
host subject id
HIV089
host taxid
9606
host weight
46
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
321.7409349
ifabp_pg_ml
2513.2
il_10_pg_ml
372.8281058
il_12_23p40_pg_ml
161.0623886
il_15_pg_ml
3.324473086
il_16_pg_ml
398.4527886
il_17a_pg_ml
2.546844937
il_22_pg_ml
422.5674045
il_6_pg_ml
287.0202534
il_7_pg_ml
14.94636626
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
2
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
22.81
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
5873.310811
ldl
59
leptin
0.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
1260.38
lycopene_mcg_usda
5948.66
lymphocyte_count
1289
lymphocyte_percent
35.8
magnesium_mg_usda
342.13
mcp_1_pg_ml
7689.995112
metab_disease_score_binary
LOW
metabolic_disease_score
1.120001891
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.54
mfa_18_1_octadecenoic_acid_g_usda
36.33
mfa_20_1_eicosenoic_acid_g_usda
0.29
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.24
mped_add_sug_usda
49.81
mped_dairy_cheese_usda
0.43
mped_dairy_milk_usda
0.88
mped_dairy_total_usda
1.36
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
31.57
mped_discfat_sol_usda
50.51
mped_fruit_citmlb_usda
0.39
mped_fruit_other_usda
0.36
mped_fruit_total_usda
0.75
mped_grain_nwhl_usda
6.13
mped_grain_total_usda
7.76
mped_grain_whl_usda
1.63
mped_legumes_usda
0.05
mped_m_egg_usda
0.17
mped_m_fish_hi_usda
0.02
mped_m_fish_lo_usda
0.08
mped_m_frank_usda
0.93
mped_m_meat_usda
2.87
mped_m_mpf_usda
5.16
mped_m_nutsd_usda
0.18
mped_m_organ_usda
0.01
mped_m_poult_usda
1.26
mped_m_soy_usda
0
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.06
mped_vegetable_other_usda
0.39
mped_vegetable_potato_usda
0.62
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.32
mped_vegetable_total_usda
1.49
nadir_date
7/23/14
nadir_report
Medical records report
nadir_years
0.29
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
not collected
niacin_mg_usda
42.14
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
19.39
pfa_18_3_octadecatrienoic_acig_g_usda
2.03
pfa_18_4_octadecatetraenoic_acid_g_usda
0.03
pfa_20_4_eicosatetraenoic_acid_g_usda
0.11
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.03
phosphorus_mg_usda
1335.27
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3146.5
probiotics_1wk
No
protein_g_usda
82.44
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
430.38
riboflavin_vitamin_b2_mg_usda
3.76
saa_ng_ml
439.4712921
sample name
qiita_sid_13338:13338.St.chronic.GLD004.U
sample type
stool
scd14_pg_ml
1759135.356
scd163_ng_ml
581.088054
selenium_mcg_usda
101.78
sfa_10_0_decanoic_acid_g_usda
0.51
sfa_12_0_dodecanoic_acid_g_usda
0.96
sfa_14_0_tetradecanoic_acid_g_usda
2.69
sfa_16_0_hexadecanoic_acid_g_usda
17.26
sfa_18_0_octadecanoic_acid_g_usda
8.14
sfa_4_0_butanoic_acid_g_usda
0.57
sfa_6_0_hexanoic_acid_g_usda
0.38
sfa_8_0_octanoic_acid_g_usda
0.34
sodium_mg_usda
3856.31
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.21
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
799.7466339
tnf_beta_pg_ml
0.245243805
total_fat_g_usda
103.61
total_folate_mcg_usda
548.61
total_monounsaturated_fatty_acids_g_usda
38.78
total_polyunsaturated_fatty_acids_g_usda
21.87
total_saturated_fatty_acids_g_usda
31.78
total_sugars_g_usda
233.09
triglycerides
69
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
670.5100155
vegf_pg_ml
129.046292
viral load
492
vitamin_a_rae_mcg_usda
532.61
vitamin_b12_mcg_usda
9.64
vitamin_b6_mg_usda
3.7
vitamin_c_mg_usda
92.81
vitamin_e_as_alpha_tocopherol_mg_usda
8.45
vitamin_k_mcg_usda
77.51
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.29