13338.St.neg.GLD032
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617082
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD032
abdominal_distension_new
2
abdominal_pain_24hr_new
YES
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
5.3
alcohol_g_usda
44.78
alpha_carotene_mcg_usda
123.31
beta_carotene_mcg_usda
1964.98
beta_cryptoxanthin_mcg_usda
116.69
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
377.17
calcium_mg_usda
2589.89
carbohydrate_g_usda
812.25
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
633.37
cohort
HIV negative MSM
collection_timestamp
5/29/15
constipation_24hr_new
NO
copper_mg_usda
3.89
crp_ng_ml
6358.640307
decreased_stools_new
1
dietary_fiber_g_usda
60.52
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
6034.9
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
YES
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
956.65
folic_acid_mcg_usda
271.54
food_folate_mcg_usda
495.72
gender
male
gi_summary_score
1.857142857
glucose
88
gm_csf_pg_ml
0.127562811
gramwt_g_usda
9392.15
hard_stools_new
1
hdl
66
heartburn_new
2
hispanic
No
host age
44
host body habitat
colon
host body mass index
23.7
host body product
feces
host common name
human
host height
171
host scientific name
Homo sapiens
host subject id
HIV057
host taxid
9606
host weight
69.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
457.0414453
ifabp_pg_ml
1301.325
il_10_pg_ml
262.4658229
il_12_23p40_pg_ml
84.09615816
il_15_pg_ml
5.136046117
il_16_pg_ml
345.6180019
il_17a_pg_ml
1.705368244
il_22_pg_ml
423.3781047
il_6_pg_ml
309.7199707
il_7_pg_ml
25.29083256
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
41.71
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
14277.02703
ldl
76
leptin
2.3
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
1018.45
lycopene_mcg_usda
33960.61
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
728.05
mcp_1_pg_ml
8824.924976
metab_disease_score_binary
LOW
metabolic_disease_score
0.885334782
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
3.74
mfa_18_1_octadecenoic_acid_g_usda
65.62
mfa_20_1_eicosenoic_acid_g_usda
0.46
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
3.16
mped_add_sug_usda
107.33
mped_dairy_cheese_usda
3.22
mped_dairy_milk_usda
1.33
mped_dairy_total_usda
4.56
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
28.78
mped_discfat_sol_usda
129.35
mped_fruit_citmlb_usda
0.22
mped_fruit_other_usda
0.21
mped_fruit_total_usda
0.43
mped_grain_nwhl_usda
12.46
mped_grain_total_usda
12.79
mped_grain_whl_usda
0.33
mped_legumes_usda
2.55
mped_m_egg_usda
0.76
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.03
mped_m_frank_usda
1.18
mped_m_meat_usda
7.79
mped_m_mpf_usda
10.8
mped_m_nutsd_usda
0.18
mped_m_organ_usda
0
mped_m_poult_usda
1.79
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0
mped_vegetable_drkgr_usda
0.02
mped_vegetable_other_usda
1.58
mped_vegetable_potato_usda
0.36
mped_vegetable_starcy_usda
0.05
mped_vegetable_tomato_usda
2.01
mped_vegetable_total_usda
4.01
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
40.02
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
27.4
pfa_18_3_octadecatrienoic_acig_g_usda
3.26
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.26
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.04
phosphorus_mg_usda
3632.88
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
6503.53
probiotics_1wk
No
protein_g_usda
215.55
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Single
retinol_mcg_usda
657.97
riboflavin_vitamin_b2_mg_usda
3.7
saa_ng_ml
4795.865286
sample name
qiita_sid_13338:13338.St.neg.GLD032
sample type
stool
scd14_pg_ml
1947893.371
scd163_ng_ml
804.6088566
selenium_mcg_usda
237.92
sfa_10_0_decanoic_acid_g_usda
1.21
sfa_12_0_dodecanoic_acid_g_usda
1.58
sfa_14_0_tetradecanoic_acid_g_usda
7.08
sfa_16_0_hexadecanoic_acid_g_usda
38.49
sfa_18_0_octadecanoic_acid_g_usda
18.17
sfa_4_0_butanoic_acid_g_usda
1.74
sfa_6_0_hexanoic_acid_g_usda
0.96
sfa_8_0_octanoic_acid_g_usda
0.7
sodium_mg_usda
10741.82
statins_1mo
No
thiamin_vitamin_b1_mg_usda
3.19
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
646.6561279
tnf_beta_pg_ml
0.090245643
total_fat_g_usda
192.78
total_folate_mcg_usda
767.28
total_monounsaturated_fatty_acids_g_usda
71.9
total_polyunsaturated_fatty_acids_g_usda
31.82
total_saturated_fatty_acids_g_usda
72.41
total_sugars_g_usda
476.64
triglycerides
90
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
3
vcam_1_ng_ml
442.2984246
vegf_pg_ml
114.7741489
vitamin_a_rae_mcg_usda
830.4
vitamin_b12_mcg_usda
9.91
vitamin_b6_mg_usda
3.83
vitamin_c_mg_usda
127.6
vitamin_e_as_alpha_tocopherol_mg_usda
14.38
vitamin_k_mcg_usda
102.51
watery_diarrhea_24hr_new
YES
zinc_mg_usda
46.98