13338.St.chronic.GLD021.T.b
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617018
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD021.T.b
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
12.9
alcohol_g_usda
0
alpha_carotene_mcg_usda
1164.12
art_years
9
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
6650.22
beta_cryptoxanthin_mcg_usda
75.92
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
3
caffeine_mg_usda
691.35
calcium_mg_usda
717.84
carbohydrate_g_usda
254.06
cd4_cd38_single_positive_cells
71
cd4_count
578
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_nadir
70
cd4_percent
33
cd8_cd38_single_positive_cells
23
cd8_count
910
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
11
cd8_percent
52
cholesterol_drugs_1mo
No
cholesterol_mg_usda
185.96
cohort
HIV treated
collection_timestamp
3/4/15
constipation_24hr_new
NO
copper_mg_usda
1.51
crp_ng_ml
796.3764784
current_art
lexiva, truvada, norvir
current_art_start_date
1/1/06
decreased_stools_new
1
dietary_fiber_g_usda
22.1
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1823.99
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
685.28
folic_acid_mcg_usda
181.71
food_folate_mcg_usda
376.3
gender
male
gi_summary_score
1.642857143
glucose
87
gm_csf_pg_ml
0.203596594
gramwt_g_usda
4925.62
hard_stools_new
2
hdl
40
heartburn_new
1
hispanic
No
host age
58
host body habitat
colon
host body mass index
24.5
host body product
feces
host common name
human
host height
166
host scientific name
Homo sapiens
host subject id
HIV042
host taxid
9606
host weight
67.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
548.8419362
ifabp_pg_ml
6797.469
il_10_pg_ml
216.2051328
il_12_23p40_pg_ml
189.1139178
il_15_pg_ml
3.506371318
il_16_pg_ml
307.8758297
il_17a_pg_ml
1.428849799
il_22_pg_ml
152.1644515
il_6_pg_ml
324.1553136
il_7_pg_ml
6.440202669
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
2006
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
17.05
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
9918.918919
ldl
152
leptin
3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
5643.33
lycopene_mcg_usda
8373.22
lymphocyte_count
1750
lymphocyte_percent
40.7
magnesium_mg_usda
361.49
mcp_1_pg_ml
8266.423692
metab_disease_score_binary
HIGH
metabolic_disease_score
1.419203878
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.98
mfa_18_1_octadecenoic_acid_g_usda
23.75
mfa_20_1_eicosenoic_acid_g_usda
0.15
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
13.35
mped_dairy_cheese_usda
0.81
mped_dairy_milk_usda
0.22
mped_dairy_total_usda
1.04
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
13.78
mped_discfat_sol_usda
34.73
mped_fruit_citmlb_usda
0.35
mped_fruit_other_usda
0.81
mped_fruit_total_usda
1.16
mped_grain_nwhl_usda
6.24
mped_grain_total_usda
7.32
mped_grain_whl_usda
1.07
mped_legumes_usda
0.45
mped_m_egg_usda
0.37
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.09
mped_m_frank_usda
0.37
mped_m_meat_usda
1.61
mped_m_mpf_usda
2.65
mped_m_nutsd_usda
0.31
mped_m_organ_usda
0.01
mped_m_poult_usda
0.58
mped_m_soy_usda
0.02
mped_vegetable_dpyel_usda
0.35
mped_vegetable_drkgr_usda
0.71
mped_vegetable_other_usda
0.53
mped_vegetable_potato_usda
0.24
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.54
mped_vegetable_total_usda
2.41
nadir_date
1/1/06
nadir_report
Patient report
nadir_years
9.17
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
20.33
no_symptoms_24hr_new
YES
orientation_new
Bisexual
pfa_18_2_octadecadienoic_acid_g_usda
10.59
pfa_18_3_octadecatrienoic_acig_g_usda
1.37
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.08
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1086.05
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3903.11
probiotics_1wk
No
protein_g_usda
66.86
race
White
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
308.32
riboflavin_vitamin_b2_mg_usda
2.39
saa_ng_ml
1972.462276
sample name
qiita_sid_13338:13338.St.chronic.GLD021.T.b
sample type
stool
scd14_pg_ml
1401723.728
scd163_ng_ml
1311.740249
selenium_mcg_usda
88.24
sfa_10_0_decanoic_acid_g_usda
0.27
sfa_12_0_dodecanoic_acid_g_usda
0.38
sfa_14_0_tetradecanoic_acid_g_usda
1.59
sfa_16_0_hexadecanoic_acid_g_usda
10.61
sfa_18_0_octadecanoic_acid_g_usda
5.16
sfa_4_0_butanoic_acid_g_usda
0.41
sfa_6_0_hexanoic_acid_g_usda
0.17
sfa_8_0_octanoic_acid_g_usda
0.14
sodium_mg_usda
3200.11
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.6
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
853.4857059
tnf_beta_pg_ml
0.201067665
total_fat_g_usda
64.62
total_folate_mcg_usda
558.46
total_monounsaturated_fatty_acids_g_usda
25.21
total_polyunsaturated_fatty_acids_g_usda
12.25
total_saturated_fatty_acids_g_usda
19.33
total_sugars_g_usda
93.14
triglycerides
206
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
680.4877106
vegf_pg_ml
54.62476874
viral load
20
vitamin_a_rae_mcg_usda
914.06
vitamin_b12_mcg_usda
3.04
vitamin_b6_mg_usda
1.79
vitamin_c_mg_usda
97.32
vitamin_e_as_alpha_tocopherol_mg_usda
6.55
vitamin_k_mcg_usda
252.04
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.45