13338.St.chronic.DM019.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617005
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM019.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.1
alcohol_g_usda
0.27
alpha_carotene_mcg_usda
103.59
art_years
9
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
616.06
beta_cryptoxanthin_mcg_usda
45.27
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
not collected
caffeine_mg_usda
35.32
calcium_mg_usda
853.78
carbohydrate_g_usda
242.64
cd4_cd38_single_positive_cells
72
cd4_count
1014
cd4_hladr_cd38_percent
6
cd4_hladr_single_positive_cells
2
cd4_nadir
not collected
cd4_percent
50
cd8_cd38_single_positive_cells
35
cd8_count
466
cd8_hladr_cd38_percent
8
cd8_hladr_single_positive_cells
5
cd8_percent
23
cholesterol_drugs_1mo
No
cholesterol_mg_usda
232.5
cohort
HIV treated
collection_timestamp
6/22/16
constipation_24hr_new
NO
copper_mg_usda
1.17
crp_ng_ml
1349.533972
current_art
Atripla
current_art_start_date
8/19/05
decreased_stools_new
1
dietary_fiber_g_usda
12.67
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1589.79
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
433.4
folic_acid_mcg_usda
170.38
food_folate_mcg_usda
143.67
gender
male
gi_summary_score
1.5
glucose
98
gm_csf_pg_ml
0.23428481
gramwt_g_usda
3610.76
hard_stools_new
1
hdl
45
heartburn_new
3
hispanic
No
host age
35
host body habitat
colon
host body mass index
22.9
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV060
host taxid
9606
host weight
71.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
475.2305029
ifabp_pg_ml
2970.5
il_10_pg_ml
230.6404444
il_12_23p40_pg_ml
335.3432589
il_15_pg_ml
4.088860827
il_16_pg_ml
526.5244093
il_17a_pg_ml
2.748611233
il_22_pg_ml
260.8751558
il_6_pg_ml
280.9448651
il_7_pg_ml
4.987079942
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
2005
insulin
7
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
16.07
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5885.338346
ldl
128
leptin
6.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
612.63
lycopene_mcg_usda
650.34
lymphocyte_count
2027.2
lymphocyte_percent
36.2
magnesium_mg_usda
282.95
mcp_1_pg_ml
2337.629783
metab_disease_score_binary
LOW
metabolic_disease_score
1.34097979
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.82
mfa_18_1_octadecenoic_acid_g_usda
16.29
mfa_20_1_eicosenoic_acid_g_usda
0.14
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.02
mped_add_sug_usda
26.21
mped_dairy_cheese_usda
0.11
mped_dairy_milk_usda
1.21
mped_dairy_total_usda
1.54
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
11.88
mped_discfat_sol_usda
18.47
mped_fruit_citmlb_usda
0.34
mped_fruit_other_usda
0.99
mped_fruit_total_usda
1.33
mped_grain_nwhl_usda
1.67
mped_grain_total_usda
2.99
mped_grain_whl_usda
1.32
mped_legumes_usda
0.02
mped_m_egg_usda
0.59
mped_m_fish_hi_usda
0.1
mped_m_fish_lo_usda
0.02
mped_m_frank_usda
3.59
mped_m_meat_usda
0.13
mped_m_mpf_usda
4.23
mped_m_nutsd_usda
0.79
mped_m_organ_usda
0
mped_m_poult_usda
0.39
mped_m_soy_usda
0.05
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.11
mped_vegetable_other_usda
0.12
mped_vegetable_potato_usda
0.02
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.04
mped_vegetable_total_usda
0.33
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
26.08
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.34
pfa_18_3_octadecatrienoic_acig_g_usda
0.75
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0.02
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.05
phosphorus_mg_usda
1223.08
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2369.07
probiotics_1wk
not collected
protein_g_usda
59.21
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
737.17
riboflavin_vitamin_b2_mg_usda
2.31
saa_ng_ml
2545.615299
sample name
qiita_sid_13338:13338.St.chronic.DM019.1.T
sample type
stool
scd14_pg_ml
2041529.203
scd163_ng_ml
494.6026169
selenium_mcg_usda
70.17
sfa_10_0_decanoic_acid_g_usda
0.32
sfa_12_0_dodecanoic_acid_g_usda
0.55
sfa_14_0_tetradecanoic_acid_g_usda
1.31
sfa_16_0_hexadecanoic_acid_g_usda
8.14
sfa_18_0_octadecanoic_acid_g_usda
3.18
sfa_4_0_butanoic_acid_g_usda
0.35
sfa_6_0_hexanoic_acid_g_usda
0.21
sfa_8_0_octanoic_acid_g_usda
0.19
sodium_mg_usda
2635.97
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.7
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
686.9280826
tnf_beta_pg_ml
0.221588788
total_fat_g_usda
45.9
total_folate_mcg_usda
314.95
total_monounsaturated_fatty_acids_g_usda
17.48
total_polyunsaturated_fatty_acids_g_usda
9.36
total_saturated_fatty_acids_g_usda
14.98
total_sugars_g_usda
153.41
triglycerides
119
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
538.8572501
vegf_pg_ml
70.27507298
viral load
0
vitamin_a_rae_mcg_usda
794.48
vitamin_b12_mcg_usda
5.86
vitamin_b6_mg_usda
2.87
vitamin_c_mg_usda
86.02
vitamin_e_as_alpha_tocopherol_mg_usda
7.25
vitamin_k_mcg_usda
53.47
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.02