13338.St.neg.GLD120
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617104
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:21Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD120
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
11.8
alcohol_g_usda
0
alpha_carotene_mcg_usda
903.95
beta_carotene_mcg_usda
4327.67
beta_cryptoxanthin_mcg_usda
99.84
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
2
caffeine_mg_usda
211.7
calcium_mg_usda
807.47
carbohydrate_g_usda
237.02
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
321.81
cohort
HIV negative MSW
collection_timestamp
6/2/16
constipation_24hr_new
NO
copper_mg_usda
1.37
crp_ng_ml
1523.585529
decreased_stools_new
1
dietary_fiber_g_usda
21.18
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1747.03
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
458.97
folic_acid_mcg_usda
112.43
food_folate_mcg_usda
267.69
gender
male
gi_summary_score
1.428571429
glucose
88
gm_csf_pg_ml
0.246816638
gramwt_g_usda
3552.45
hard_stools_new
1
hdl
39
heartburn_new
1
hispanic
No
host age
27
host body habitat
colon
host body mass index
21.6
host body product
feces
host common name
human
host height
190
host scientific name
Homo sapiens
host subject id
HIV213
host taxid
9606
host weight
78.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
341.4950223
ifabp_pg_ml
1806.029
il_10_pg_ml
247.8212128
il_12_23p40_pg_ml
107.0654024
il_15_pg_ml
3.533020401
il_16_pg_ml
215.5273283
il_17a_pg_ml
4.561209823
il_22_pg_ml
244.6925047
il_6_pg_ml
358.210457
il_7_pg_ml
6.417778056
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
11.27
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
11609.02256
ldl
112
leptin
1.9
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2262.7
lycopene_mcg_usda
6258.89
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
301.8
mcp_1_pg_ml
10797.76715
metab_disease_score_binary
LOW
metabolic_disease_score
1.176805903
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.94
mfa_18_1_octadecenoic_acid_g_usda
24.81
mfa_20_1_eicosenoic_acid_g_usda
0.22
mfa_22_1_docosenoic_acid_g_usda
0.01
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
12.75
mped_dairy_cheese_usda
0.62
mped_dairy_milk_usda
0.58
mped_dairy_total_usda
1.26
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
13.61
mped_discfat_sol_usda
42.3
mped_fruit_citmlb_usda
0.23
mped_fruit_other_usda
1.88
mped_fruit_total_usda
2.11
mped_grain_nwhl_usda
3.92
mped_grain_total_usda
4.42
mped_grain_whl_usda
0.5
mped_legumes_usda
0.37
mped_m_egg_usda
1.02
mped_m_fish_hi_usda
0
mped_m_fish_lo_usda
0.01
mped_m_frank_usda
0.01
mped_m_meat_usda
0.39
mped_m_mpf_usda
0.58
mped_m_nutsd_usda
1.25
mped_m_organ_usda
0
mped_m_poult_usda
0.18
mped_m_soy_usda
0.6
mped_vegetable_dpyel_usda
0.17
mped_vegetable_drkgr_usda
0.17
mped_vegetable_other_usda
0.28
mped_vegetable_potato_usda
0.15
mped_vegetable_starcy_usda
0.25
mped_vegetable_tomato_usda
0.34
mped_vegetable_total_usda
1.36
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
14.57
no_symptoms_24hr_new
YES
orientation_new
Heterosexual
pfa_18_2_octadecadienoic_acid_g_usda
11.83
pfa_18_3_octadecatrienoic_acig_g_usda
1.08
pfa_18_4_octadecatetraenoic_acid_g_usda
0
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1063.83
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2727.57
probiotics_1wk
No
protein_g_usda
55.15
race
White
rai_frequency_new
Never
relationship_status_new
Married/Living with partner
retinol_mcg_usda
375.43
riboflavin_vitamin_b2_mg_usda
1.95
saa_ng_ml
2404.285812
sample name
qiita_sid_13338:13338.St.neg.GLD120
sample type
stool
scd14_pg_ml
1387941.643
scd163_ng_ml
456.9062283
selenium_mcg_usda
67.44
sfa_10_0_decanoic_acid_g_usda
0.52
sfa_12_0_dodecanoic_acid_g_usda
0.7
sfa_14_0_tetradecanoic_acid_g_usda
2.39
sfa_16_0_hexadecanoic_acid_g_usda
12.81
sfa_18_0_octadecanoic_acid_g_usda
5.52
sfa_4_0_butanoic_acid_g_usda
0.71
sfa_6_0_hexanoic_acid_g_usda
0.38
sfa_8_0_octanoic_acid_g_usda
0.26
sodium_mg_usda
2445.27
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.25
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
748.6509526
tnf_beta_pg_ml
0.34127483
total_fat_g_usda
70.42
total_folate_mcg_usda
379.99
total_monounsaturated_fatty_acids_g_usda
26.38
total_polyunsaturated_fatty_acids_g_usda
13.17
total_saturated_fatty_acids_g_usda
24.35
total_sugars_g_usda
107.26
triglycerides
84
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
597.3531058
vegf_pg_ml
48.49943739
vitamin_a_rae_mcg_usda
778.62
vitamin_b12_mcg_usda
2.49
vitamin_b6_mg_usda
1.68
vitamin_c_mg_usda
71.14
vitamin_e_as_alpha_tocopherol_mg_usda
7.4
vitamin_k_mcg_usda
100.21
watery_diarrhea_24hr_new
NO
zinc_mg_usda
7.98