13338.St.chronic.GLD023.T
ENA-FIRST-PUBLIC
2021-04-17T00:26:22Z
ENA-LAST-UPDATE
2020-11-24T22:15:12Z
External Id
SAMEA7617020
INSDC center name
UCSDMI
INSDC first public
2021-04-17T00:26:22Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD023.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
17.8
alcohol_g_usda
8.03
alpha_carotene_mcg_usda
850.12
art_years
2
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
2819.71
beta_cryptoxanthin_mcg_usda
72.08
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
6.5
caffeine_mg_usda
551.47
calcium_mg_usda
1082.18
carbohydrate_g_usda
230.94
cd4_cd38_single_positive_cells
74
cd4_count
510
cd4_hladr_cd38_percent
3
cd4_hladr_single_positive_cells
1
cd4_nadir
355
cd4_percent
35
cd8_cd38_single_positive_cells
30
cd8_count
568
cd8_hladr_cd38_percent
12
cd8_hladr_single_positive_cells
12
cd8_percent
39
cholesterol_drugs_1mo
No
cholesterol_mg_usda
241.5
cohort
HIV treated
collection_timestamp
3/18/15
constipation_24hr_new
NO
copper_mg_usda
1.62
crp_ng_ml
1463.326292
current_art
DRV/RTV/truvada
current_art_start_date
5/14/14
decreased_stools_new
1
dietary_fiber_g_usda
18.49
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2054.66
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
454.51
folic_acid_mcg_usda
118.91
food_folate_mcg_usda
252.31
gender
male
gi_summary_score
1.5
glucose
87
gm_csf_pg_ml
0.244647061
gramwt_g_usda
3465.04
hard_stools_new
1
hdl
60
heartburn_new
2
hispanic
No
host age
49
host body habitat
colon
host body mass index
22.7
host body product
feces
host common name
human
host height
177
host scientific name
Homo sapiens
host subject id
HIV075
host taxid
9606
host weight
71.2
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
383.9154249
ifabp_pg_ml
4501.522
il_10_pg_ml
344.9196003
il_12_23p40_pg_ml
326.7344461
il_15_pg_ml
4.020244237
il_16_pg_ml
121.7455214
il_17a_pg_ml
2.357658567
il_22_pg_ml
198.2723129
il_6_pg_ml
304.6648582
il_7_pg_ml
10.42257503
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
2013
insulin
9
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
12.89
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8263.513514
ldl
99
leptin
3.7
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
887.84
lycopene_mcg_usda
12133.88
lymphocyte_count
1456
lymphocyte_percent
36.4
magnesium_mg_usda
388.26
mcp_1_pg_ml
10205.50876
metab_disease_score_binary
LOW
metabolic_disease_score
0.919816549
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.26
mfa_18_1_octadecenoic_acid_g_usda
32.4
mfa_20_1_eicosenoic_acid_g_usda
0.32
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.6
mped_add_sug_usda
14.81
mped_dairy_cheese_usda
0.29
mped_dairy_milk_usda
1.54
mped_dairy_total_usda
2.04
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
27.79
mped_discfat_sol_usda
44.62
mped_fruit_citmlb_usda
0.22
mped_fruit_other_usda
1.47
mped_fruit_total_usda
1.69
mped_grain_nwhl_usda
2.66
mped_grain_total_usda
3.29
mped_grain_whl_usda
0.63
mped_legumes_usda
0.05
mped_m_egg_usda
0.25
mped_m_fish_hi_usda
0.42
mped_m_fish_lo_usda
0.7
mped_m_frank_usda
0.28
mped_m_meat_usda
1.15
mped_m_mpf_usda
2.86
mped_m_nutsd_usda
3.43
mped_m_organ_usda
0
mped_m_poult_usda
0.32
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.11
mped_vegetable_drkgr_usda
0.03
mped_vegetable_other_usda
0.27
mped_vegetable_potato_usda
0.12
mped_vegetable_starcy_usda
0.06
mped_vegetable_tomato_usda
0.55
mped_vegetable_total_usda
1.14
nadir_date
4/16/13
nadir_report
Medical records report
nadir_years
1.92
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
23.03
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
16.51
pfa_18_3_octadecatrienoic_acig_g_usda
1.47
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.12
phosphorus_mg_usda
1511
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3767.22
probiotics_1wk
No
protein_g_usda
76.38
race
White
rai_frequency_new
>1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
616.08
riboflavin_vitamin_b2_mg_usda
3.17
saa_ng_ml
3614.294568
sample name
qiita_sid_13338:13338.St.chronic.GLD023.T
sample type
stool
scd14_pg_ml
1590481.744
scd163_ng_ml
357.5672514
scientific_name
gut metagenome
selenium_mcg_usda
103.31
sfa_10_0_decanoic_acid_g_usda
0.79
sfa_12_0_dodecanoic_acid_g_usda
1.22
sfa_14_0_tetradecanoic_acid_g_usda
3.4
sfa_16_0_hexadecanoic_acid_g_usda
15.66
sfa_18_0_octadecanoic_acid_g_usda
7
sfa_4_0_butanoic_acid_g_usda
0.98
sfa_6_0_hexanoic_acid_g_usda
0.55
sfa_8_0_octanoic_acid_g_usda
0.4
sodium_mg_usda
2564.66
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.44
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
814.9960103
tnf_beta_pg_ml
0.290768921
total_fat_g_usda
94.09
total_folate_mcg_usda
371.37
total_monounsaturated_fatty_acids_g_usda
34.86
total_polyunsaturated_fatty_acids_g_usda
18.43
total_saturated_fatty_acids_g_usda
31.55
total_sugars_g_usda
128.58
triglycerides
89
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
2
vcam_1_ng_ml
658.4300892
vegf_pg_ml
47.61271872
viral load
5314
vitamin_a_rae_mcg_usda
889.95
vitamin_b12_mcg_usda
6.11
vitamin_b6_mg_usda
2.12
vitamin_c_mg_usda
89.89
vitamin_e_as_alpha_tocopherol_mg_usda
10.14
vitamin_k_mcg_usda
66.41
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.78