13338.St.neg.GLD052
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617087
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD052
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
6.1
alcohol_g_usda
2.54
alpha_carotene_mcg_usda
842.67
beta_carotene_mcg_usda
4226.27
beta_cryptoxanthin_mcg_usda
129.77
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
4
caffeine_mg_usda
280.51
calcium_mg_usda
541.92
carbohydrate_g_usda
247.72
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
186.68
cohort
HIV negative MSM
collection_timestamp
12/4/15
constipation_24hr_new
NO
copper_mg_usda
1.45
crp_ng_ml
not collected
decreased_stools_new
1
dietary_fiber_g_usda
18.81
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1853.22
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
688.73
folic_acid_mcg_usda
215.99
food_folate_mcg_usda
321.55
gender
male
gi_summary_score
1.214285714
glucose
91
gm_csf_pg_ml
not collected
gramwt_g_usda
4062.19
hard_stools_new
1
hdl
41
heartburn_new
1
hispanic
No
host age
41
host body habitat
colon
host body mass index
24.9
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV165
host taxid
9606
host weight
77.1
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
not collected
ifabp_pg_ml
not collected
il_10_pg_ml
not collected
il_12_23p40_pg_ml
not collected
il_15_pg_ml
not collected
il_16_pg_ml
not collected
il_17a_pg_ml
not collected
il_22_pg_ml
not collected
il_6_pg_ml
not collected
il_7_pg_ml
not collected
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
insulin
6
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
16.69
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
not collected
ldl
123
leptin
16
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
3337.42
lycopene_mcg_usda
5229.93
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
325
mcp_1_pg_ml
not collected
metab_disease_score_binary
LOW
metabolic_disease_score
1.255322319
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.96
mfa_18_1_octadecenoic_acid_g_usda
28.88
mfa_20_1_eicosenoic_acid_g_usda
0.24
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.18
mped_add_sug_usda
17.97
mped_dairy_cheese_usda
0.16
mped_dairy_milk_usda
0.33
mped_dairy_total_usda
0.52
mped_dairy_yogurt_usda
0.02
mped_discfat_oil_usda
21.49
mped_discfat_sol_usda
35.37
mped_fruit_citmlb_usda
0.48
mped_fruit_other_usda
0.73
mped_fruit_total_usda
1.22
mped_grain_nwhl_usda
4.3
mped_grain_total_usda
5.26
mped_grain_whl_usda
0.95
mped_legumes_usda
0.07
mped_m_egg_usda
0.26
mped_m_fish_hi_usda
0.27
mped_m_fish_lo_usda
0.79
mped_m_frank_usda
0.66
mped_m_meat_usda
1.29
mped_m_mpf_usda
4.06
mped_m_nutsd_usda
1.13
mped_m_organ_usda
0.03
mped_m_poult_usda
1.02
mped_m_soy_usda
0.01
mped_vegetable_dpyel_usda
0.15
mped_vegetable_drkgr_usda
0.44
mped_vegetable_other_usda
0.46
mped_vegetable_potato_usda
0.21
mped_vegetable_starcy_usda
0.18
mped_vegetable_tomato_usda
0.49
mped_vegetable_total_usda
1.93
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
22.28
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.11
pfa_18_3_octadecatrienoic_acig_g_usda
1.42
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.1
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.12
phosphorus_mg_usda
1053.48
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3183.93
probiotics_1wk
No
protein_g_usda
62.96
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
369.27
riboflavin_vitamin_b2_mg_usda
1.9
saa_ng_ml
not collected
sample name
qiita_sid_13338:13338.St.neg.GLD052
sample type
stool
scd14_pg_ml
not collected
scd163_ng_ml
not collected
selenium_mcg_usda
89.36
sfa_10_0_decanoic_acid_g_usda
0.41
sfa_12_0_dodecanoic_acid_g_usda
0.83
sfa_14_0_tetradecanoic_acid_g_usda
1.77
sfa_16_0_hexadecanoic_acid_g_usda
11.13
sfa_18_0_octadecanoic_acid_g_usda
5.44
sfa_4_0_butanoic_acid_g_usda
0.48
sfa_6_0_hexanoic_acid_g_usda
0.26
sfa_8_0_octanoic_acid_g_usda
0.23
sodium_mg_usda
2484.65
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.48
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
not collected
tnf_beta_pg_ml
not collected
total_fat_g_usda
71.23
total_folate_mcg_usda
537.79
total_monounsaturated_fatty_acids_g_usda
30.56
total_polyunsaturated_fatty_acids_g_usda
14.18
total_saturated_fatty_acids_g_usda
21.43
total_sugars_g_usda
113.81
triglycerides
81
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
1
vcam_1_ng_ml
not collected
vegf_pg_ml
not collected
vitamin_a_rae_mcg_usda
762.91
vitamin_b12_mcg_usda
4.27
vitamin_b6_mg_usda
2.03
vitamin_c_mg_usda
105.7
vitamin_e_as_alpha_tocopherol_mg_usda
8.67
vitamin_k_mcg_usda
176.51
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.18