13338.St.chronic.GLD145.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617054
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:16Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD145.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
2
adiponectin
3.2
alcohol_g_usda
4.22
alpha_carotene_mcg_usda
137.59
art_years
28
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
1315.48
beta_cryptoxanthin_mcg_usda
130.27
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
3
caffeine_mg_usda
322.28
calcium_mg_usda
1214.4
carbohydrate_g_usda
179.1
cd4_cd38_single_positive_cells
54
cd4_count
562
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
1
cd4_nadir
140
cd4_percent
36
cd8_cd38_single_positive_cells
8
cd8_count
578
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
8
cd8_percent
37
cholest_type
tricor
cholesterol_drugs_1mo
Yes
cholesterol_mg_usda
322.62
cohort
HIV treated LD
collection_timestamp
2/7/17
constipation_24hr_new
NO
copper_mg_usda
1.9
crp_ng_ml
1329.54689
current_art
descovy, darunavir, isentress, norvir
current_art_start_date
1/1/16
decreased_stools_new
2
dietary_fiber_g_usda
15.28
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1658.42
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
482.46
folic_acid_mcg_usda
98.9
food_folate_mcg_usda
313.94
gender
male
gi_summary_score
2.142857143
glucose
99
gm_csf_pg_ml
0.51091577
gramwt_g_usda
4263.2
hard_stools_new
3
hdl
26
heartburn_new
2
hispanic
No
host age
64
host body habitat
colon
host body mass index
22.3
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV260
host taxid
9606
host weight
66.5
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
380.5300438
ifabp_pg_ml
1760.186
il_10_pg_ml
354.8590544
il_12_23p40_pg_ml
376.8037162
il_15_pg_ml
4.468376161
il_16_pg_ml
480.8511879
il_17a_pg_ml
8.85272889
il_22_pg_ml
618.2510871
il_6_pg_ml
474.0814455
il_7_pg_ml
8.695608023
incomplete_evacuation_new
2
increased_flatus_new
3
increased_stools_new
2
initial_art_start_date
1989
insulin
23
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
13.92
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
12089.83452
ldl
53
leptin
5.5
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1898
lycopene_mcg_usda
2131.18
lymphocyte_count
1561
lymphocyte_percent
22.3
magnesium_mg_usda
403.03
mcp_1_pg_ml
11070.18223
metab_disease_score_binary
HIGH
metabolic_disease_score
1.845149119
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.13
mfa_18_1_octadecenoic_acid_g_usda
25.57
mfa_20_1_eicosenoic_acid_g_usda
0.23
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.31
mped_add_sug_usda
12.97
mped_dairy_cheese_usda
0.32
mped_dairy_milk_usda
1.09
mped_dairy_total_usda
1.96
mped_dairy_yogurt_usda
0.53
mped_discfat_oil_usda
20.16
mped_discfat_sol_usda
31.99
mped_fruit_citmlb_usda
0.59
mped_fruit_other_usda
1.31
mped_fruit_total_usda
1.9
mped_grain_nwhl_usda
1.39
mped_grain_total_usda
1.42
mped_grain_whl_usda
0.03
mped_legumes_usda
0.12
mped_m_egg_usda
0.88
mped_m_fish_hi_usda
0.12
mped_m_fish_lo_usda
0.23
mped_m_frank_usda
0.53
mped_m_meat_usda
1.99
mped_m_mpf_usda
3.3
mped_m_nutsd_usda
2.07
mped_m_organ_usda
0.01
mped_m_poult_usda
0.42
mped_m_soy_usda
0.08
mped_vegetable_dpyel_usda
0.02
mped_vegetable_drkgr_usda
0.13
mped_vegetable_other_usda
0.29
mped_vegetable_potato_usda
0.13
mped_vegetable_starcy_usda
0.16
mped_vegetable_tomato_usda
0.1
mped_vegetable_total_usda
0.83
nadir_date
1/1/96
nadir_report
Patient report
nadir_years
21.1
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
22.72
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
12.14
pfa_18_3_octadecatrienoic_acig_g_usda
1.08
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.12
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1452.18
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3461.74
probiotics_1wk
Yogurt 5 times a week with B. Bifidus
protein_g_usda
82.44
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/Living with partner
retinol_mcg_usda
1115.56
riboflavin_vitamin_b2_mg_usda
2.72
saa_ng_ml
4625.286729
sample name
qiita_sid_13338:13338.St.chronic.GLD145.T
sample type
stool
scd14_pg_ml
2353523.708
scd163_ng_ml
739.2124532
selenium_mcg_usda
97.07
sfa_10_0_decanoic_acid_g_usda
0.48
sfa_12_0_dodecanoic_acid_g_usda
0.6
sfa_14_0_tetradecanoic_acid_g_usda
2.01
sfa_16_0_hexadecanoic_acid_g_usda
11.98
sfa_18_0_octadecanoic_acid_g_usda
5.08
sfa_4_0_butanoic_acid_g_usda
0.51
sfa_6_0_hexanoic_acid_g_usda
0.31
sfa_8_0_octanoic_acid_g_usda
0.33
sodium_mg_usda
2451.83
statin_type
pravastatin
statins_1mo
Yes
thiamin_vitamin_b1_mg_usda
1.71
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
871.2211231
tnf_beta_pg_ml
0.266611195
total_fat_g_usda
68.87
total_folate_mcg_usda
412.75
total_monounsaturated_fatty_acids_g_usda
27.23
total_polyunsaturated_fatty_acids_g_usda
13.55
total_saturated_fatty_acids_g_usda
22.05
total_sugars_g_usda
106.16
triglycerides
321
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
2
vcam_1_ng_ml
632.1970723
vegf_pg_ml
44.15567786
viral load
0
vitamin_a_rae_mcg_usda
1236.13
vitamin_b12_mcg_usda
6.31
vitamin_b6_mg_usda
2.36
vitamin_c_mg_usda
109.89
vitamin_e_as_alpha_tocopherol_mg_usda
10.42
vitamin_k_mcg_usda
129.75
watery_diarrhea_24hr_new
NO
zinc_mg_usda
13.75