13338.St.chronic.DM052.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617010
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:13Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM052.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
2
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7.7
alcohol_g_usda
0.29
alpha_carotene_mcg_usda
506.2
art_years
19
arv_ccr5_antagonist
NO
arv_ii
YES
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
2558.33
beta_cryptoxanthin_mcg_usda
261.24
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
2
caffeine_mg_usda
78.64
calcium_mg_usda
3431.94
carbohydrate_g_usda
1186.56
cd4_cd38_single_positive_cells
52
cd4_count
331
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
2
cd4_nadir
not collected
cd4_percent
22
cd8_cd38_single_positive_cells
35
cd8_count
406
cd8_hladr_cd38_percent
7
cd8_hladr_single_positive_cells
5
cd8_percent
27
cholesterol_drugs_1mo
not collected
cholesterol_mg_usda
1194.88
cohort
HIV treated
collection_timestamp
6/14/17
constipation_24hr_new
NO
copper_mg_usda
4.21
crp_ng_ml
2726.843034
current_art
tivicay & truvada
current_art_start_date
6/1/16
decreased_stools_new
2
dietary_fiber_g_usda
45.07
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
8646.9
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
2
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
1578.55
folic_acid_mcg_usda
616.14
food_folate_mcg_usda
530.96
gender
male
gi_summary_score
1.571428571
glucose
80
gm_csf_pg_ml
0.212260143
gramwt_g_usda
6593.23
hard_stools_new
2
hdl
33
heartburn_new
1
hispanic
No
host age
43
host body habitat
colon
host body mass index
24
host body product
feces
host common name
human
host height
172
host scientific name
Homo sapiens
host subject id
HIV292
host taxid
9606
host weight
70.9
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
469.0925031
ifabp_pg_ml
3053.073
il_10_pg_ml
361.2230859
il_12_23p40_pg_ml
128.3985406
il_15_pg_ml
4.687407541
il_16_pg_ml
292.6833521
il_17a_pg_ml
3.864665072
il_22_pg_ml
431.8139624
il_6_pg_ml
460.86224
il_7_pg_ml
15.09348599
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
1
initial_art_start_date
1998
insulin
9
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
48.84
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
8187.969925
ldl
42
leptin
5.1
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
1649.84
lycopene_mcg_usda
7513.01
lymphocyte_count
1505
lymphocyte_percent
35
magnesium_mg_usda
850.89
mcp_1_pg_ml
9020.247349
metab_disease_score_binary
LOW
metabolic_disease_score
1.165954688
metabolome_data
Yes
metformin_1mo
not collected
mfa_16_1_hexadecenoic_acid_g_usda
3.97
mfa_18_1_octadecenoic_acid_g_usda
115.68
mfa_20_1_eicosenoic_acid_g_usda
0.62
mfa_22_1_docosenoic_acid_g_usda
0.13
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.02
mped_add_sug_usda
135.71
mped_dairy_cheese_usda
0.31
mped_dairy_milk_usda
6.12
mped_dairy_total_usda
6.44
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
73.61
mped_discfat_sol_usda
219.15
mped_fruit_citmlb_usda
0.97
mped_fruit_other_usda
2.34
mped_fruit_total_usda
3.32
mped_grain_nwhl_usda
23.71
mped_grain_total_usda
25.41
mped_grain_whl_usda
1.7
mped_legumes_usda
0.03
mped_m_egg_usda
3.02
mped_m_fish_hi_usda
0.7
mped_m_fish_lo_usda
0.93
mped_m_frank_usda
1.8
mped_m_meat_usda
5.77
mped_m_mpf_usda
9.4
mped_m_nutsd_usda
2.07
mped_m_organ_usda
0
mped_m_poult_usda
0.21
mped_m_soy_usda
0.1
mped_vegetable_dpyel_usda
0.07
mped_vegetable_drkgr_usda
0.02
mped_vegetable_other_usda
0.63
mped_vegetable_potato_usda
0.9
mped_vegetable_starcy_usda
0.04
mped_vegetable_tomato_usda
0.49
mped_vegetable_total_usda
2.15
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
2
new_sti_12mo_new
No
niacin_mg_usda
59.01
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
59.96
pfa_18_3_octadecatrienoic_acig_g_usda
5.81
pfa_18_4_octadecatetraenoic_acid_g_usda
0.03
pfa_20_4_eicosatetraenoic_acid_g_usda
0.37
pfa_20_5_eicosapentaenoic_acid_g_usda
0.15
pfa_22_5_docosapentaenoic_acid_g_usda
0.05
pfa_22_6_docosahexaenoic_acid_g_usda
0.27
phosphorus_mg_usda
4542.39
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
8138.36
probiotics_1wk
not collected
protein_g_usda
231.98
race
Black/African American
rai_frequency_new
Never
relationship_status_new
Single
retinol_mcg_usda
2422.39
riboflavin_vitamin_b2_mg_usda
8.01
saa_ng_ml
562.6667279
sample name
qiita_sid_13338:13338.St.chronic.DM052.1.T
sample type
stool
scd14_pg_ml
1487346.595
scd163_ng_ml
1252.430017
selenium_mcg_usda
312.08
sfa_10_0_decanoic_acid_g_usda
2.63
sfa_12_0_dodecanoic_acid_g_usda
5.1
sfa_14_0_tetradecanoic_acid_g_usda
11.37
sfa_16_0_hexadecanoic_acid_g_usda
63.52
sfa_18_0_octadecanoic_acid_g_usda
33.87
sfa_4_0_butanoic_acid_g_usda
3.36
sfa_6_0_hexanoic_acid_g_usda
1.79
sfa_8_0_octanoic_acid_g_usda
1.37
sodium_mg_usda
9560.1
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
5.06
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
842.7073069
tnf_beta_pg_ml
0.157239862
total_fat_g_usda
343.91
total_folate_mcg_usda
1146.84
total_monounsaturated_fatty_acids_g_usda
123.73
total_polyunsaturated_fatty_acids_g_usda
67.33
total_saturated_fatty_acids_g_usda
126.2
total_sugars_g_usda
727.99
triglycerides
52
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
679.8557605
vegf_pg_ml
83.89506422
viral load
0
vitamin_a_rae_mcg_usda
2666.28
vitamin_b12_mcg_usda
19.17
vitamin_b6_mg_usda
5.41
vitamin_c_mg_usda
204.89
vitamin_e_as_alpha_tocopherol_mg_usda
28.52
vitamin_k_mcg_usda
195.09
watery_diarrhea_24hr_new
NO
zinc_mg_usda
37.74