13338.St.chronic.DM002.1.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617003
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM002.1.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
4.4
alcohol_g_usda
0.01
alpha_carotene_mcg_usda
55.81
art_years
4
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
4547.37
beta_cryptoxanthin_mcg_usda
63.15
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
317.07
calcium_mg_usda
1076.1
carbohydrate_g_usda
253.27
cd4_cd38_single_positive_cells
59
cd4_count
573.21
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
2
cd4_nadir
350
cd4_percent
27
cd8_cd38_single_positive_cells
11
cd8_count
849.2
cd8_hladr_cd38_percent
5
cd8_hladr_single_positive_cells
5
cd8_percent
40
cholesterol_drugs_1mo
not collected
cholesterol_mg_usda
653.91
cohort
HIV treated
collection_timestamp
2/10/16
constipation_24hr_new
NO
copper_mg_usda
1.68
crp_ng_ml
2165.437686
current_art
Atripla
current_art_start_date
4/1/12
decreased_stools_new
2
dietary_fiber_g_usda
19.03
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2501.97
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
738.1
folic_acid_mcg_usda
198.43
food_folate_mcg_usda
400.76
gender
male
gi_summary_score
1.642857143
glucose
93
gm_csf_pg_ml
0.143489478
gramwt_g_usda
3968.42
hard_stools_new
2
hdl
34
heartburn_new
1
hispanic
No
host age
30
host body habitat
colon
host body mass index
21
host body product
feces
host common name
human
host height
186
host scientific name
Homo sapiens
host subject id
HIV083
host taxid
9606
host weight
72.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
321.870288
ifabp_pg_ml
3343.228
il_10_pg_ml
253.1273567
il_12_23p40_pg_ml
120.0608264
il_15_pg_ml
4.283574139
il_16_pg_ml
343.0540668
il_17a_pg_ml
1.009329064
il_22_pg_ml
211.4110361
il_6_pg_ml
330.285158
il_7_pg_ml
8.086817327
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
2012
insulin
6
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
18.34
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
9992.481203
ldl
60
leptin
6.8
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2869.1
lycopene_mcg_usda
1519.33
lymphocyte_count
2123
lymphocyte_percent
38.6
magnesium_mg_usda
397.01
mcp_1_pg_ml
7390.782669
metab_disease_score_binary
LOW
metabolic_disease_score
1.345308916
metabolome_data
Yes
metformin_1mo
not collected
mfa_16_1_hexadecenoic_acid_g_usda
1.94
mfa_18_1_octadecenoic_acid_g_usda
54.34
mfa_20_1_eicosenoic_acid_g_usda
0.52
mfa_22_1_docosenoic_acid_g_usda
0.15
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0
mped_add_sug_usda
13.45
mped_dairy_cheese_usda
0.37
mped_dairy_milk_usda
1.39
mped_dairy_total_usda
1.78
mped_dairy_yogurt_usda
0
mped_discfat_oil_usda
59.01
mped_discfat_sol_usda
40.36
mped_fruit_citmlb_usda
0.19
mped_fruit_other_usda
1.07
mped_fruit_total_usda
1.25
mped_grain_nwhl_usda
5.08
mped_grain_total_usda
6.13
mped_grain_whl_usda
1.05
mped_legumes_usda
0.01
mped_m_egg_usda
2.25
mped_m_fish_hi_usda
2.19
mped_m_fish_lo_usda
0.29
mped_m_frank_usda
0.13
mped_m_meat_usda
1.85
mped_m_mpf_usda
5.14
mped_m_nutsd_usda
2.13
mped_m_organ_usda
0.02
mped_m_poult_usda
0.65
mped_m_soy_usda
0.07
mped_vegetable_dpyel_usda
0.13
mped_vegetable_drkgr_usda
0.67
mped_vegetable_other_usda
0.85
mped_vegetable_potato_usda
0.45
mped_vegetable_starcy_usda
0.01
mped_vegetable_tomato_usda
0.08
mped_vegetable_total_usda
2.21
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
3
new_sti_12mo_new
not collected
niacin_mg_usda
36.57
no_symptoms_24hr_new
YES
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
21.19
pfa_18_3_octadecatrienoic_acig_g_usda
1.93
pfa_18_4_octadecatetraenoic_acid_g_usda
0.07
pfa_20_4_eicosatetraenoic_acid_g_usda
0.29
pfa_20_5_eicosapentaenoic_acid_g_usda
0.32
pfa_22_5_docosapentaenoic_acid_g_usda
0.08
pfa_22_6_docosahexaenoic_acid_g_usda
0.54
phosphorus_mg_usda
1716.95
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3554.97
probiotics_1wk
not collected
protein_g_usda
104.24
race
White
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
825.04
riboflavin_vitamin_b2_mg_usda
3.63
saa_ng_ml
2377.929165
sample name
qiita_sid_13338:13338.St.chronic.DM002.1.T
sample type
stool
scd14_pg_ml
1473678.414
scd163_ng_ml
518.6503132
selenium_mcg_usda
165.61
sfa_10_0_decanoic_acid_g_usda
0.46
sfa_12_0_dodecanoic_acid_g_usda
0.76
sfa_14_0_tetradecanoic_acid_g_usda
2.3
sfa_16_0_hexadecanoic_acid_g_usda
19.26
sfa_18_0_octadecanoic_acid_g_usda
7.21
sfa_4_0_butanoic_acid_g_usda
0.54
sfa_6_0_hexanoic_acid_g_usda
0.29
sfa_8_0_octanoic_acid_g_usda
0.25
sodium_mg_usda
3630.86
statins_1mo
not collected
thiamin_vitamin_b1_mg_usda
2.21
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
494.882914
tnf_beta_pg_ml
0.11036301
total_fat_g_usda
124.41
total_folate_mcg_usda
601.01
total_monounsaturated_fatty_acids_g_usda
57.33
total_polyunsaturated_fatty_acids_g_usda
24.66
total_saturated_fatty_acids_g_usda
32.35
total_sugars_g_usda
108.15
triglycerides
110
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
2
vcam_1_ng_ml
781.6203304
vegf_pg_ml
192.5569715
viral load
0
vitamin_a_rae_mcg_usda
1208.95
vitamin_b12_mcg_usda
9.22
vitamin_b6_mg_usda
3.46
vitamin_c_mg_usda
120.83
vitamin_e_as_alpha_tocopherol_mg_usda
15.29
vitamin_k_mcg_usda
225.98
watery_diarrhea_24hr_new
NO
zinc_mg_usda
14.12