13338.St.chronic.DM032.1.T
ENA-FIRST-PUBLIC
2021-04-17T00:26:21Z
ENA-LAST-UPDATE
2020-11-24T22:15:10Z
External Id
SAMEA7617006
INSDC center name
UCSDMI
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:10Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.DM032.1.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
3.5
alcohol_g_usda
0
alpha_carotene_mcg_usda
755.62
art_years
8
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
NO
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
5316.07
beta_cryptoxanthin_mcg_usda
53.14
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
7.33
calcium_mg_usda
1353.25
carbohydrate_g_usda
295.94
cd4_cd38_single_positive_cells
91
cd4_count
1216
cd4_hladr_cd38_percent
4
cd4_hladr_single_positive_cells
0
cd4_nadir
700
cd4_percent
57
cd8_cd38_single_positive_cells
45
cd8_count
555
cd8_hladr_cd38_percent
15
cd8_hladr_single_positive_cells
5
cd8_percent
26
cholesterol_drugs_1mo
No
cholesterol_mg_usda
216.41
cohort
HIV treated
collection_timestamp
9/28/16
constipation_24hr_new
NO
copper_mg_usda
1.87
crp_ng_ml
1426.298014
current_art
Epzicom & Prezcobix
current_art_start_date
6/1/16
decreased_stools_new
1
dietary_fiber_g_usda
18.74
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2203.93
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
977.82
folic_acid_mcg_usda
391.3
food_folate_mcg_usda
312.33
gender
male
gi_summary_score
1.142857143
glucose
91
gm_csf_pg_ml
0.354958575
gramwt_g_usda
2030.35
hard_stools_new
2
hdl
37
heartburn_new
1
hispanic
No
host age
46
host body habitat
colon
host body mass index
21.7
host body product
feces
host common name
human
host height
170
host scientific name
Homo sapiens
host subject id
HIV244
host taxid
9606
host weight
62.7
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
570.1073514
ifabp_pg_ml
2375.254
il_10_pg_ml
301.2366221
il_12_23p40_pg_ml
420.9530314
il_15_pg_ml
2.787035825
il_16_pg_ml
443.363016
il_17a_pg_ml
6.011905086
il_22_pg_ml
361.6713274
il_6_pg_ml
267.8432117
il_7_pg_ml
8.50173092
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
initial_art_start_date
2008
insulin
3
intercourse_w_hiv_partner_12mo_new
No
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
25.99
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5875.93985
ldl
86
leptin
2.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
5404.3
lycopene_mcg_usda
24579.7
lymphocyte_count
2133.6
lymphocyte_percent
38.1
magnesium_mg_usda
429.25
mcp_1_pg_ml
10085.98665
metab_disease_score_binary
LOW
metabolic_disease_score
1.335480557
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.08
mfa_18_1_octadecenoic_acid_g_usda
27.6
mfa_20_1_eicosenoic_acid_g_usda
0.25
mfa_22_1_docosenoic_acid_g_usda
0.04
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0
mped_add_sug_usda
23.34
mped_dairy_cheese_usda
0.33
mped_dairy_milk_usda
2.81
mped_dairy_total_usda
3.22
mped_dairy_yogurt_usda
0.05
mped_discfat_oil_usda
17.51
mped_discfat_sol_usda
44.6
mped_fruit_citmlb_usda
0.23
mped_fruit_other_usda
1.3
mped_fruit_total_usda
1.54
mped_grain_nwhl_usda
4.65
mped_grain_total_usda
5.78
mped_grain_whl_usda
1.13
mped_legumes_usda
0.01
mped_m_egg_usda
0.22
mped_m_fish_hi_usda
0.54
mped_m_fish_lo_usda
0.39
mped_m_frank_usda
1.17
mped_m_meat_usda
1.15
mped_m_mpf_usda
3.9
mped_m_nutsd_usda
1.18
mped_m_organ_usda
0
mped_m_poult_usda
0.64
mped_m_soy_usda
0.1
mped_vegetable_dpyel_usda
0.1
mped_vegetable_drkgr_usda
0.31
mped_vegetable_other_usda
0.17
mped_vegetable_potato_usda
0.13
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
1.1
mped_vegetable_total_usda
1.88
nadir_date
not collected
nadir_report
not collected
nadir_years
not collected
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
Yes
niacin_mg_usda
35.08
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
14.77
pfa_18_3_octadecatrienoic_acig_g_usda
1.3
pfa_18_4_octadecatetraenoic_acid_g_usda
0.02
pfa_20_4_eicosatetraenoic_acid_g_usda
0.09
pfa_20_5_eicosapentaenoic_acid_g_usda
0.07
pfa_22_5_docosapentaenoic_acid_g_usda
0.02
pfa_22_6_docosahexaenoic_acid_g_usda
0.14
phosphorus_mg_usda
1659.99
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3744.91
probiotics_1wk
not collected
protein_g_usda
89.97
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Single
retinol_mcg_usda
1204.24
riboflavin_vitamin_b2_mg_usda
3.38
saa_ng_ml
1656.310788
sample name
qiita_sid_13338:13338.St.chronic.DM032.1.T
sample type
stool
scd14_pg_ml
2496306.859
scd163_ng_ml
928.7610244
scientific_name
gut metagenome
selenium_mcg_usda
115.85
sfa_10_0_decanoic_acid_g_usda
0.62
sfa_12_0_dodecanoic_acid_g_usda
0.82
sfa_14_0_tetradecanoic_acid_g_usda
2.57
sfa_16_0_hexadecanoic_acid_g_usda
14.25
sfa_18_0_octadecanoic_acid_g_usda
6.39
sfa_4_0_butanoic_acid_g_usda
0.79
sfa_6_0_hexanoic_acid_g_usda
0.45
sfa_8_0_octanoic_acid_g_usda
0.31
sodium_mg_usda
3819.45
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.43
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
879.1271351
tnf_beta_pg_ml
0.759607488
total_fat_g_usda
79.26
total_folate_mcg_usda
703.59
total_monounsaturated_fatty_acids_g_usda
29.24
total_polyunsaturated_fatty_acids_g_usda
16.58
total_saturated_fatty_acids_g_usda
27.22
total_sugars_g_usda
162.24
triglycerides
122
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
728.0924446
vegf_pg_ml
43.70010684
viral load
0
vitamin_a_rae_mcg_usda
1682.85
vitamin_b12_mcg_usda
9.12
vitamin_b6_mg_usda
3.6
vitamin_c_mg_usda
148.96
vitamin_e_as_alpha_tocopherol_mg_usda
12.48
vitamin_k_mcg_usda
324.71
watery_diarrhea_24hr_new
NO
zinc_mg_usda
16.36