13338.St.neg.GLD018
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617081
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:19Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.neg.GLD018
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
7.4
alcohol_g_usda
8.03
alpha_carotene_mcg_usda
603.55
beta_carotene_mcg_usda
6660.14
beta_cryptoxanthin_mcg_usda
66.78
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
519.45
calcium_mg_usda
1434.77
carbohydrate_g_usda
195.51
cd4_cd38_single_positive_cells
not collected
cd4_count
not collected
cd4_hladr_cd38_percent
not collected
cd4_hladr_single_positive_cells
not collected
cd4_percent
not collected
cd8_cd38_single_positive_cells
not collected
cd8_count
not collected
cd8_hladr_cd38_percent
not collected
cd8_hladr_single_positive_cells
not collected
cd8_percent
not collected
cholesterol_drugs_1mo
No
cholesterol_mg_usda
197.62
cohort
HIV negative MSM
collection_timestamp
2/19/15
constipation_24hr_new
NO
copper_mg_usda
1.62
crp_ng_ml
2448.250129
decreased_stools_new
1
dietary_fiber_g_usda
20.71
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
1591.02
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
611.06
folic_acid_mcg_usda
144.55
food_folate_mcg_usda
365.27
gender
male
gi_summary_score
1.071428571
glucose
79
gm_csf_pg_ml
0.237900668
gramwt_g_usda
5286.25
hard_stools_new
1
hdl
44
heartburn_new
2
hispanic
No
host age
38
host body habitat
colon
host body mass index
28.2
host body product
feces
host common name
human
host height
173
host scientific name
Homo sapiens
host subject id
HIV151
host taxid
9606
host weight
84.4
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
315.6556689
ifabp_pg_ml
1518.748
il_10_pg_ml
271.9360286
il_12_23p40_pg_ml
120.7196631
il_15_pg_ml
2.928610855
il_16_pg_ml
502.340418
il_17a_pg_ml
2.812557879
il_22_pg_ml
415.4927083
il_6_pg_ml
330.2683279
il_7_pg_ml
25.78632929
incomplete_evacuation_new
1
increased_flatus_new
1
increased_stools_new
1
insulin
2
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
No
iron_mg_usda
17.61
ivdu_12mo_new
No
ivdu_ever_new
No
lattitude
39.742 N
lbp_ng_ml
5543.918919
ldl
97
leptin
12.2
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
1
lutein_zeaxanthin_mcg_usda
8079.86
lycopene_mcg_usda
7692.02
lymphocyte_count
not collected
lymphocyte_percent
not collected
magnesium_mg_usda
434.09
mcp_1_pg_ml
9449.343634
metab_disease_score_binary
LOW
metabolic_disease_score
1.029315728
metabolome_data
No
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.96
mfa_18_1_octadecenoic_acid_g_usda
16.87
mfa_20_1_eicosenoic_acid_g_usda
0.1
mfa_22_1_docosenoic_acid_g_usda
0.02
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.6
mped_add_sug_usda
9.08
mped_dairy_cheese_usda
1.64
mped_dairy_milk_usda
0.83
mped_dairy_total_usda
2.68
mped_dairy_yogurt_usda
0.21
mped_discfat_oil_usda
12.84
mped_discfat_sol_usda
27.59
mped_fruit_citmlb_usda
0.3
mped_fruit_other_usda
1.15
mped_fruit_total_usda
1.45
mped_grain_nwhl_usda
3.48
mped_grain_total_usda
4.73
mped_grain_whl_usda
1.26
mped_legumes_usda
0.05
mped_m_egg_usda
1.13
mped_m_fish_hi_usda
0.22
mped_m_fish_lo_usda
0.06
mped_m_frank_usda
0.13
mped_m_meat_usda
0.77
mped_m_mpf_usda
2.05
mped_m_nutsd_usda
0.15
mped_m_organ_usda
0.01
mped_m_poult_usda
0.86
mped_m_soy_usda
0.09
mped_vegetable_dpyel_usda
0.14
mped_vegetable_drkgr_usda
0.9
mped_vegetable_other_usda
0.87
mped_vegetable_potato_usda
0.44
mped_vegetable_starcy_usda
0.08
mped_vegetable_tomato_usda
0.55
mped_vegetable_total_usda
2.96
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
20.75
no_symptoms_24hr_new
YES
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
8.53
pfa_18_3_octadecatrienoic_acig_g_usda
0.85
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.08
pfa_20_5_eicosapentaenoic_acid_g_usda
0.03
pfa_22_5_docosapentaenoic_acid_g_usda
0.01
pfa_22_6_docosahexaenoic_acid_g_usda
0.06
phosphorus_mg_usda
1473.96
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
3682.24
probiotics_1wk
No
protein_g_usda
76.33
race
White
rai_frequency_new
Never
relationship_status_new
Married/living with partner
retinol_mcg_usda
675.33
riboflavin_vitamin_b2_mg_usda
3.01
saa_ng_ml
3241.441845
sample name
qiita_sid_13338:13338.St.neg.GLD018
sample type
stool
scd14_pg_ml
1468738.408
scd163_ng_ml
712.4931935
selenium_mcg_usda
88.92
sfa_10_0_decanoic_acid_g_usda
0.41
sfa_12_0_dodecanoic_acid_g_usda
0.51
sfa_14_0_tetradecanoic_acid_g_usda
2.09
sfa_16_0_hexadecanoic_acid_g_usda
10.41
sfa_18_0_octadecanoic_acid_g_usda
4.11
sfa_4_0_butanoic_acid_g_usda
0.61
sfa_6_0_hexanoic_acid_g_usda
0.25
sfa_8_0_octanoic_acid_g_usda
0.22
sodium_mg_usda
3177.98
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.55
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
901.3109309
tnf_beta_pg_ml
0.14873087
total_fat_g_usda
54.91
total_folate_mcg_usda
509.74
total_monounsaturated_fatty_acids_g_usda
18.29
total_polyunsaturated_fatty_acids_g_usda
9.85
total_saturated_fatty_acids_g_usda
19.12
total_sugars_g_usda
77.16
triglycerides
62
unprotexted_anal_intercourse_male_mtf_6mo_new
No
urgent_defection_new
1
vcam_1_ng_ml
440.615395
vegf_pg_ml
70.03368524
vitamin_a_rae_mcg_usda
1259.19
vitamin_b12_mcg_usda
4.19
vitamin_b6_mg_usda
2.15
vitamin_c_mg_usda
124.19
vitamin_e_as_alpha_tocopherol_mg_usda
9.77
vitamin_k_mcg_usda
447.14
watery_diarrhea_24hr_new
NO
zinc_mg_usda
11.87