13338.St.chronic.GLD026.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617022
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:12Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD026.T
abdominal_distension_new
2
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
No
acid_regurgitation_new
1
adiponectin
2.4
alcohol_g_usda
0.05
alpha_carotene_mcg_usda
901.27
art_years
13
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
YES
beta_carotene_mcg_usda
3321.97
beta_cryptoxanthin_mcg_usda
961.05
bloating_24hr_new
NO
borborygmus_new
1
bristol_stool_scale_sample
4
caffeine_mg_usda
117.93
calcium_mg_usda
1415.06
carbohydrate_g_usda
445.04
cd4_cd38_single_positive_cells
31
cd4_count
838
cd4_hladr_cd38_percent
2
cd4_hladr_single_positive_cells
3
cd4_nadir
436
cd4_percent
35
cd8_cd38_single_positive_cells
4
cd8_count
838
cd8_hladr_cd38_percent
6
cd8_hladr_single_positive_cells
8
cd8_percent
35
cholesterol_drugs_1mo
No
cholesterol_mg_usda
446.72
cohort
HIV treated
collection_timestamp
4/14/15
constipation_24hr_new
NO
copper_mg_usda
2.64
crp_ng_ml
3281.227127
current_art
combivir & sustiva
current_art_start_date
1/1/02
decreased_stools_new
1
dietary_fiber_g_usda
23.91
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
3351.77
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
not collected
folate_dfe_mcg_usda
923.73
folic_acid_mcg_usda
276.59
food_folate_mcg_usda
453.79
gender
male
gi_summary_score
1.285714286
glucose
98
gm_csf_pg_ml
0.236391395
gramwt_g_usda
5149.64
hard_stools_new
1
hdl
43
heartburn_new
1
hispanic
No
host age
53
host body habitat
colon
host body mass index
26.9
host body product
feces
host common name
human
host height
181
host scientific name
Homo sapiens
host subject id
HIV155
host taxid
9606
host weight
88
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
310.9253904
ifabp_pg_ml
464.201
il_10_pg_ml
309.6626603
il_12_23p40_pg_ml
130.5744734
il_15_pg_ml
4.214412777
il_16_pg_ml
334.5941894
il_17a_pg_ml
3.933990139
il_22_pg_ml
195.844299
il_6_pg_ml
372.621033
il_7_pg_ml
12.13724124
incomplete_evacuation_new
1
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
2002
insulin
13
intercourse_w_hiv_partner_12mo_new
not collected
intercourse_w_ivdu_partner_12mo_new
not collected
iron_mg_usda
25.45
ivdu_12mo_new
not collected
ivdu_ever_new
not collected
lattitude
39.742 N
lbp_ng_ml
14234.7973
ldl
107
leptin
3.3
lognitude
104.838 W
loose_stools_24hr_new
NO
loose_stools_diarrhea_new
2
lutein_zeaxanthin_mcg_usda
2715.33
lycopene_mcg_usda
2622.06
lymphocyte_count
2394
lymphocyte_percent
35.2
magnesium_mg_usda
533.12
mcp_1_pg_ml
8515.544821
metab_disease_score_binary
HIGH
metabolic_disease_score
1.443371569
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
1.93
mfa_18_1_octadecenoic_acid_g_usda
45.55
mfa_20_1_eicosenoic_acid_g_usda
0.51
mfa_22_1_docosenoic_acid_g_usda
0.05
money_drugs_gifts_for_sex_12mo_new
not collected
mped_a_bev_usda
0.01
mped_add_sug_usda
21.96
mped_dairy_cheese_usda
1.21
mped_dairy_milk_usda
0.53
mped_dairy_total_usda
2.09
mped_dairy_yogurt_usda
0.34
mped_discfat_oil_usda
36.35
mped_discfat_sol_usda
56.34
mped_fruit_citmlb_usda
3.25
mped_fruit_other_usda
2.83
mped_fruit_total_usda
6.08
mped_grain_nwhl_usda
6.22
mped_grain_total_usda
6.88
mped_grain_whl_usda
0.65
mped_legumes_usda
0.02
mped_m_egg_usda
0.69
mped_m_fish_hi_usda
0.18
mped_m_fish_lo_usda
0.5
mped_m_frank_usda
2.48
mped_m_meat_usda
1.84
mped_m_mpf_usda
8.42
mped_m_nutsd_usda
3.14
mped_m_organ_usda
0
mped_m_poult_usda
3.42
mped_m_soy_usda
0.05
mped_vegetable_dpyel_usda
0.17
mped_vegetable_drkgr_usda
0.21
mped_vegetable_other_usda
0.7
mped_vegetable_potato_usda
1.13
mped_vegetable_starcy_usda
0.27
mped_vegetable_tomato_usda
0.15
mped_vegetable_total_usda
2.63
nadir_date
1/1/02
nadir_report
Patient report
nadir_years
13.28
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
not collected
niacin_mg_usda
41.39
no_symptoms_24hr_new
NO
orientation_new
not collected
pfa_18_2_octadecadienoic_acid_g_usda
23.01
pfa_18_3_octadecatrienoic_acig_g_usda
2.46
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.23
pfa_20_5_eicosapentaenoic_acid_g_usda
0.06
pfa_22_5_docosapentaenoic_acid_g_usda
0.04
pfa_22_6_docosahexaenoic_acid_g_usda
0.12
phosphorus_mg_usda
2065.69
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
5541.85
probiotics_1wk
No
protein_g_usda
131.25
race
Black/African American
rai_frequency_new
not collected
relationship_status_new
not collected
retinol_mcg_usda
558.85
riboflavin_vitamin_b2_mg_usda
3.04
saa_ng_ml
831.7423171
sample name
qiita_sid_13338:13338.St.chronic.GLD026.T
sample type
stool
scd14_pg_ml
1167172.347
scd163_ng_ml
667.5909348
selenium_mcg_usda
171.95
sfa_10_0_decanoic_acid_g_usda
0.76
sfa_12_0_dodecanoic_acid_g_usda
1.18
sfa_14_0_tetradecanoic_acid_g_usda
3.47
sfa_16_0_hexadecanoic_acid_g_usda
20.77
sfa_18_0_octadecanoic_acid_g_usda
8.87
sfa_4_0_butanoic_acid_g_usda
0.98
sfa_6_0_hexanoic_acid_g_usda
0.5
sfa_8_0_octanoic_acid_g_usda
0.39
sodium_mg_usda
4467.77
statins_1mo
No
thiamin_vitamin_b1_mg_usda
2.72
three_male_mtf_partners_anal_intercourse_6mo_new
not collected
tnf_alpha_pg_ml
599.219167
tnf_beta_pg_ml
0.185440767
total_fat_g_usda
122.77
total_folate_mcg_usda
730.2
total_monounsaturated_fatty_acids_g_usda
48.55
total_polyunsaturated_fatty_acids_g_usda
26.18
total_saturated_fatty_acids_g_usda
38.28
total_sugars_g_usda
254.07
triglycerides
128
unprotexted_anal_intercourse_male_mtf_6mo_new
not collected
urgent_defection_new
1
vcam_1_ng_ml
448.7255381
vegf_pg_ml
172.3076949
viral load
20
vitamin_a_rae_mcg_usda
914.27
vitamin_b12_mcg_usda
6.68
vitamin_b6_mg_usda
3.66
vitamin_c_mg_usda
458.11
vitamin_e_as_alpha_tocopherol_mg_usda
13.69
vitamin_k_mcg_usda
122.13
watery_diarrhea_24hr_new
NO
zinc_mg_usda
18.32