13338.St.chronic.GLD072.T
ENA first public
2021-04-17
ENA last update
2020-11-24
External Id
SAMEA7617036
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-04-17T00:26:21Z
INSDC last update
2020-11-24T22:15:14Z
INSDC status
public
Submitter Id
qiita_sid_13338:13338.St.chronic.GLD072.T
abdominal_distension_new
1
abdominal_pain_24hr_new
NO
abdominal_pains_new
1
abx_non_exclusion
Yes
abx_non_exclusion_type
not collected
acid_regurgitation_new
1
adiponectin
5.1
alcohol_g_usda
4.95
alpha_carotene_mcg_usda
1167.68
art_years
21
arv_ccr5_antagonist
NO
arv_ii
NO
arv_nnrti
YES
arv_nrti
YES
arv_pe
NO
arv_pi
NO
beta_carotene_mcg_usda
3802.79
beta_cryptoxanthin_mcg_usda
221.63
bloating_24hr_new
NO
borborygmus_new
2
bristol_stool_scale_sample
6
caffeine_mg_usda
14.56
calcium_mg_usda
594.24
carbohydrate_g_usda
294.53
cd4_cd38_single_positive_cells
85
cd4_count
686.91
cd4_hladr_cd38_percent
1
cd4_hladr_single_positive_cells
0
cd4_nadir
600
cd4_percent
57
cd8_cd38_single_positive_cells
23
cd8_count
361.53
cd8_hladr_cd38_percent
9
cd8_hladr_single_positive_cells
3
cd8_percent
30
cholesterol_drugs_1mo
No
cholesterol_mg_usda
112.52
cohort
HIV treated LD
collection_timestamp
2/11/16
constipation_24hr_new
NO
copper_mg_usda
1.84
crp_ng_ml
3307.5288
current_art
Complera
current_art_start_date
2/1/12
decreased_stools_new
1
dietary_fiber_g_usda
25.78
elevation
5,403
empo_1
Host-associated
empo_2
Animal-associated
empo_3
Animal distal gut
energy_kcal_usda
2177.15
env biome
Urban Biome
env feature
Human-associated habitat
env package
human-gut
env_material
feces
eructation_new
1
excess_gas_24hr_new
NO
five_opposite_sex_partners_6mo_new
No
folate_dfe_mcg_usda
531.39
folic_acid_mcg_usda
140.47
food_folate_mcg_usda
292.62
gender
male
gi_summary_score
1.571428571
glucose
94
gm_csf_pg_ml
0.500701819
gramwt_g_usda
2146.41
hard_stools_new
1
hdl
52
heartburn_new
1
hispanic
No
host age
62
host body habitat
colon
host body mass index
20.2
host body product
feces
host common name
human
host height
176
host scientific name
Homo sapiens
host subject id
HIV180
host taxid
9606
host weight
62.6
host_age_units
years
host_height_units
cm
host_weight_units
kg
icam_1_ng_ml
452.7563083
ifabp_pg_ml
4389.693
il_10_pg_ml
497.649303
il_12_23p40_pg_ml
154.7548399
il_15_pg_ml
5.588381647
il_16_pg_ml
286.0540091
il_17a_pg_ml
7.499091243
il_22_pg_ml
348.6494803
il_6_pg_ml
360.4848468
il_7_pg_ml
10.17949835
incomplete_evacuation_new
2
increased_flatus_new
2
increased_stools_new
2
initial_art_start_date
1995
insulin
3
intercourse_w_hiv_partner_12mo_new
Yes
intercourse_w_ivdu_partner_12mo_new
Yes
iron_mg_usda
13.56
ivdu_12mo_new
Yes
ivdu_ever_new
Yes
lattitude
39.742 N
lbp_ng_ml
9631.205674
ldl
44
leptin
2.3
lognitude
104.838 W
loose_stools_24hr_new
YES
loose_stools_diarrhea_new
3
lutein_zeaxanthin_mcg_usda
2099.59
lycopene_mcg_usda
10146.59
lymphocyte_count
1205.1
lymphocyte_percent
30.9
magnesium_mg_usda
347.32
mcp_1_pg_ml
8994.967043
metab_disease_score_binary
LOW
metabolic_disease_score
1.190942487
metabolome_data
Yes
metformin_1mo
No
mfa_16_1_hexadecenoic_acid_g_usda
0.77
mfa_18_1_octadecenoic_acid_g_usda
33.12
mfa_20_1_eicosenoic_acid_g_usda
0.37
mfa_22_1_docosenoic_acid_g_usda
0.03
money_drugs_gifts_for_sex_12mo_new
No
mped_a_bev_usda
0.36
mped_add_sug_usda
24.27
mped_dairy_cheese_usda
0.35
mped_dairy_milk_usda
0.17
mped_dairy_total_usda
0.63
mped_dairy_yogurt_usda
0.1
mped_discfat_oil_usda
40.49
mped_discfat_sol_usda
28.16
mped_fruit_citmlb_usda
0.52
mped_fruit_other_usda
0.49
mped_fruit_total_usda
1.01
mped_grain_nwhl_usda
4.61
mped_grain_total_usda
5.26
mped_grain_whl_usda
0.64
mped_legumes_usda
0.23
mped_m_egg_usda
0.16
mped_m_fish_hi_usda
0.04
mped_m_fish_lo_usda
0.15
mped_m_frank_usda
0.82
mped_m_meat_usda
0.86
mped_m_mpf_usda
2.19
mped_m_nutsd_usda
3.71
mped_m_organ_usda
0.01
mped_m_poult_usda
0.32
mped_m_soy_usda
0.03
mped_vegetable_dpyel_usda
0.22
mped_vegetable_drkgr_usda
0.17
mped_vegetable_other_usda
0.82
mped_vegetable_potato_usda
0.39
mped_vegetable_starcy_usda
0.43
mped_vegetable_tomato_usda
1
mped_vegetable_total_usda
3.05
nadir_date
1/1/99
nadir_report
Patient report
nadir_years
17.11
nausea_vomiting_24hr_new
NO
nausea_vomiting_new
1
new_sti_12mo_new
No
niacin_mg_usda
20.34
no_symptoms_24hr_new
NO
orientation_new
Gay
pfa_18_2_octadecadienoic_acid_g_usda
19.75
pfa_18_3_octadecatrienoic_acig_g_usda
1.4
pfa_18_4_octadecatetraenoic_acid_g_usda
0.01
pfa_20_4_eicosatetraenoic_acid_g_usda
0.05
pfa_20_5_eicosapentaenoic_acid_g_usda
0.01
pfa_22_5_docosapentaenoic_acid_g_usda
0
pfa_22_6_docosahexaenoic_acid_g_usda
0.02
phosphorus_mg_usda
1116.11
physical_specimen_location
University of Colorado AMC
potassium_mg_usda
2823.69
probiotics_1wk
No
protein_g_usda
61.18
race
White
rai_frequency_new
< 1 time per week
relationship_status_new
Married/living with partner
retinol_mcg_usda
209.64
riboflavin_vitamin_b2_mg_usda
1.35
saa_ng_ml
4466.71256
sample name
qiita_sid_13338:13338.St.chronic.GLD072.T
sample type
stool
scd14_pg_ml
1962075.207
scd163_ng_ml
654.6177335
selenium_mcg_usda
79.71
sfa_10_0_decanoic_acid_g_usda
0.26
sfa_12_0_dodecanoic_acid_g_usda
1
sfa_14_0_tetradecanoic_acid_g_usda
1.36
sfa_16_0_hexadecanoic_acid_g_usda
13.02
sfa_18_0_octadecanoic_acid_g_usda
6.65
sfa_4_0_butanoic_acid_g_usda
0.32
sfa_6_0_hexanoic_acid_g_usda
0.14
sfa_8_0_octanoic_acid_g_usda
0.16
sodium_mg_usda
3012.57
statins_1mo
No
thiamin_vitamin_b1_mg_usda
1.49
three_male_mtf_partners_anal_intercourse_6mo_new
No
tnf_alpha_pg_ml
876.017759
tnf_beta_pg_ml
0.225279157
total_fat_g_usda
87.13
total_folate_mcg_usda
433.04
total_monounsaturated_fatty_acids_g_usda
35.34
total_polyunsaturated_fatty_acids_g_usda
21.52
total_saturated_fatty_acids_g_usda
23.99
total_sugars_g_usda
139.49
triglycerides
146
unprotexted_anal_intercourse_male_mtf_6mo_new
Yes
urgent_defection_new
3
vcam_1_ng_ml
1136.52074
vegf_pg_ml
75.91636205
viral load
0
vitamin_a_rae_mcg_usda
585.41
vitamin_b12_mcg_usda
2.55
vitamin_b6_mg_usda
1.93
vitamin_c_mg_usda
129.08
vitamin_e_as_alpha_tocopherol_mg_usda
11.09
vitamin_k_mcg_usda
112.19
watery_diarrhea_24hr_new
NO
zinc_mg_usda
10.01