This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12456159 of study SRP277592.
ENA-FIRST-PUBLIC
2022-07-27
ENA-LAST-UPDATE
2022-07-27
External Id
SAMEA110424197
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-07-27T20:41:40Z
INSDC last update
2022-07-27T20:41:40Z
INSDC status
public
Submitter Id
SRR12456159_bin.5_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Zebrafish digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2020-01-10
completeness score
79.66
completeness software
CheckM
contamination score
0.0
environmental medium
Feces
geographic location (country and/or sea)
China
geographic location (latitude)
31.2304
geographic location (longitude)
121.4737
investigation type
metagenome-assembled genome
isolation_source
fish gut metagenome
local environmental context
Gut
metagenomic source
fish gut metagenome
project name
Gut microbiome samples from the control and antibiotic exposed zebrafish
sample derived from
SAMN15778117
sample name
SRR12456159_bin.5_metaWRAP_v1.3_MAG
sequencing method
HiSeq X Ten
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium;s__
taxonomic identity marker
multi-marker approach