The Serratus Project identified previously-submitted samples in the NCBI SRA which had viral signatures, assembled the runs, and identified novel deltavirus genomes. This sample record is a link between the viral genome and the original transcriptomic sample record. See the record listed under “sample derived from” for the original study metadata.
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better.
assembly software
coronaSPAdes;3.15
collecting institution
See sample listed under 'sample_derived_from' for metadata.
collector name
See sample listed under 'sample_derived_from' for metadata.
geographic location
not applicable
host common name
See sample listed under 'sample_derived_from' for metadata.
host health state
See sample listed under 'sample_derived_from' for metadata.
host scientific name
See sample listed under 'sample_derived_from' for metadata.
host sex
Not applicable
host subject id
See sample listed under 'sample_derived_from' for metadata.
investigation type
transcriptomic
isolate
See sample listed under 'sample_derived_from' for metadata.
predicted genome structure
non-segmented
predicted genome type
ssRNA(+)
project name
Serratus Project
relevant electronic resources
https://serratus.io
relevant standard operating procedures
https://www.biorxiv.org/content/10.1101/2020.08.07.241729v2
sample derived from
SRS7859895
SRA Run ID
SRR8389791
viral identification software
Bespoke software involving PalmScan, DIAMOND, and coronaSPAdes.
ENA-FIRST-PUBLIC
2021-12-21
ENA-LAST-UPDATE
2021-12-21