This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12456166 of study SRP277592.
assembly software
metaSPAdes v3.15.3
broad-scale environmental context
Zebrafish digestive system
collection date
2020-01-10
sample derived from
SAMN15778112
geographic location (longitude)
121.4737
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
contamination score
0.47
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__;g__Paucibacter;s__
ENA-FIRST-PUBLIC
2022-07-27T20:41:40Z
ENA-LAST-UPDATE
2022-07-27T20:41:40Z
completeness software
CheckM
geographic location (country and/or sea)
China
binning software
metaWRAP v1.3
organism
uncultured Paucibacter sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
99.77
environmental medium
Feces
geographic location (latitude)
31.2304
scientific_name
uncultured Paucibacter sp.
common name
investigation type
metagenome-assembled genome
local environmental context
Gut
metagenomic source
fish gut metagenome
project name
Gut microbiome samples from the control and antibiotic exposed zebrafish
sequencing method
HiSeq X Ten
isolation_source
fish gut metagenome
ENA-FIRST-PUBLIC
2022-07-27
ENA-LAST-UPDATE
2022-07-27