ENA-FIRST-PUBLIC
2022-07-28
ENA-LAST-UPDATE
2022-07-28
External Id
SAMEA110424855
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-07-28T12:26:06Z
INSDC last update
2022-07-28T12:26:06Z
INSDC status
public
Submitter Id
ERR2020014_bin.10_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Pig digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2016-08-01
completeness score
60.34
completeness software
CheckM
contamination score
0.0
environmental medium
Feces
geographic location (country and/or sea)
Germany
geographic location (latitude)
52.45857
geographic location (longitude)
13.288657
investigation type
metagenome-assembled genome
isolation_source
pig gut metagenome
local environmental context
Intestine
metagenomic source
pig gut metagenome
project name
We studied the effect of different zinc sources on the intestinal microbiome in weaned pigs
sample derived from
SAMEA104144104
sample name
ERR2020014_bin.10_metaWRAP_v1.3_MAG
sequencing method
NextSeq 500
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__
taxonomic identity marker
multi-marker approach