This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1543788 of study ERP016134.
ENA first public
2021-05-10
ENA last update
2021-05-10
External Id
SAMEA8703781
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2021-05-10T00:24:47Z
INSDC last update
2021-05-10T00:24:47Z
INSDC status
public
Submitter Id
ERR1543788_bin.1_metaWRAP_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-01-01
completeness score
77.62
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated sample - Birds - Digestive system
environment (feature)
Digestive tube
environment (material)
Cecum
geographic location (country and/or sea)
India
geographic location (latitude)
22.5645
geographic location (longitude)
72.9289
investigation type
metagenome-assembled genome
isolation source
chicken gut metagenome
metagenomic source
chicken gut metagenome
project name
metagenomic Shotgun analysis of cecum microbiome of poultry from Indian sub Continent
sample derived from
ERR1543788
sample name
ERR1543788_bin.1_metaWRAP_v1.1_MAG
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach