CDC Sars CoV2 Sequencing Baseline Constellation
Isolate
SARS-CoV-2/Human/USA/AL-CDC-STM-000720964/2021
collected_by
'Helix'
collection_date
2021-08-12
isolation_source
nasal swab
geo_loc_name
USA: Alabama
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
87
host_race
White
collection_device
Nasal swab
collection_method
Nasal swab
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N
diagnostic_pcr_protocol_1
Helix COVID-19 Test
diagnostic_pcr_Ct_value_1
25.769998550415
diagnostic_gene_name_2
ORF1ab
diagnostic_pcr_protocol_2
Helix COVID-19 Test
diagnostic_pcr_Ct_value_2
26.5872344970703
diagnostic_gene_name_3
S
diagnostic_pcr_protocol_3
Helix COVID-19 Test
diagnostic_pcr_Ct_value_3
26.0022888183594
lineage/clade name
AY.25
BioSampleModel
SARS-CoV-2: clinical or host-associated