CDC Sars CoV2 Sequencing Baseline Constellation
Isolate
SARS-CoV-2/Human/USA/CO-CDC-MMB14189645/2022
collected_by
Mako Medical
collection_date
2022-02-05
isolation_source
nasal swab
geo_loc_name
USA: Colorado
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
3
host_race
W
collection_device
Nasal Swab
collection_method
Nasal Swab
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
ORF1ab
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_Ct_value_1
21.859
diagnostic_gene_name_2
N gene
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_Ct_value_2
22.243
diagnostic_gene_name_3
S gene
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_Ct_value_3
Undetermined
diagnostic_gene_name_4
MS2
diagnostic_pcr_protocol_4
TaqPath
diagnostic_pcr_Ct_value_4
24.571
lineage/clade name
BA.1.1
BioSampleModel
SARS-CoV-2: clinical or host-associated