11546.stool.100163.6month; UCSD IBD Biobank
stool
ENA first public
2021-05-08
ENA last update
2021-05-08
External Id
SAMEA6845219
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-05-08T00:26:29Z
INSDC last update
2021-05-08T00:26:29Z
INSDC status
public
Submitter Id
qiita_sid_11546:11546.stool.100163.6month
anonymized name
21559
antibiotic_use
n
bowel_movements_daily
2
change_biologic
n
change_therapy
n
collection_timestamp
2015
colon_present
colon
current_integrin_inhibitor_use
y
current_steroid_use
n
current_tnf_inhibitor
n
disease
uc
disease subtype
pan_colitis
disease_complication
n
dna_extracted
TRUE
does_escalation
n
empo_1
Host-associated
empo_2
Animal
empo_3
Animal distal gut
endoscopic_activity
not collected
endoscopic_disease_activity
not collected
env biome
urban biome
env feature
human associated
env package
human-gut
env_material
stool
extracted_dna_avail_nw
y
has_surgery
n
histologic_disease_activity
not collected
histologic_endoscopic_remission
not collected
host common name
human
host scientific name
Homo sapiens
host subject id
100163
host taxid
9606
host_id
100163
ic_valve_removed
n
immune_modulator_add
n
immune_modulator_use
n
interval_antibiotics
n
interval_surgery
n
latitude
32.5
longitude
-117.25
mayo_endo_score
not collected
medication_complianc
y
notes
not provided
perianal_disease
n
physical_specimen_location
UCSDMI
physical_specimen_remaining
FALSE
physician_global_assessment
mild
pouch
n
probiotics
n
psc
n
public
n
rectal_bleeding_score
not collected
sample name
qiita_sid_11546:11546.stool.100163.6month
sample type
feces
sex
female
simple_endoscopic_score_crohns_disease
not collected
small_bowel_resection
n
steroid_course
n
subsequent_response_therapy
AMG 181 clinical trial
subsequent_surgery
n
symptoms
inactive
therapy_change
n
time point
month 6
time_point_month
6
time_point_units
months
tnf_exposure
y
tnf_responder
n
treatment_response
response
type_subsequent_surgery
n
uc_disease_extent_diagnsis
pan_colitis
use_5asa
n
ustekinumab_use
n
vedolizumab_responder
y
weeks_from_surgery
not provided
year_recent_bowel_surgery
not provided