11546.stool.100077.baseline; UCSD IBD Biobank
stool
ENA first public
2021-05-08
ENA last update
2021-05-08
External Id
SAMEA6845087
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-05-08T00:26:28Z
INSDC last update
2021-05-08T00:26:28Z
INSDC status
public
Submitter Id
qiita_sid_11546:11546.stool.100077.baseline
anonymized name
18278
antibiotic_use
n
bowel_movements_daily
6
cd_location_diagnsis
colonic
cd_subtype
ileocolonic
change_biologic
n
change_therapy
n
collection_timestamp
2014
colon_present
colon
crohns_disease_behavior
inflammatory
current_integrin_inhibitor_use
n
current_steroid_use
n
current_tnf_inhibitor
y
disease
cd
disease subtype
ileocolonic
disease_complication
n
dna_extracted
TRUE
does_escalation
n
empo_1
Host-associated
empo_2
Animal
empo_3
Animal distal gut
endoscopic_activity
inactive
endoscopic_disease_activity
remission
env biome
urban biome
env feature
human associated
env package
human-gut
env_material
stool
extracted_dna_avail_nw
y
has_surgery
n
histologic_disease_activity
y
histologic_endoscopic_remission
n
host common name
human
host scientific name
Homo sapiens
host subject id
100077
host taxid
9606
host_id
100077
ic_valve_removed
n
immune_modulator_add
n
immune_modulator_use
n
interval_antibiotics
n
interval_surgery
n
latitude
32.5
longitude
-117.25
mayo_endo_score
not collected
medication_complianc
y
notes
not provided
perianal_disease
n
physical_specimen_location
UCSDMI
physical_specimen_remaining
FALSE
physician_global_assessment
mild
pouch
n
probiotics
n
psc
n
public
n
rectal_bleeding_score
never
sample name
qiita_sid_11546:11546.stool.100077.baseline
sample type
feces
sex
female
simple_endoscopic_score_crohns_disease
0
small_bowel_resection
n
steroid_course
n
subsequent_response_therapy
not provided
subsequent_surgery
n
symptoms
active
therapy_change
n
time point
baseline
time_point_month
0
time_point_units
months
tnf_exposure
y
tnf_responder
y
treatment_response
response
type_subsequent_surgery
n
use_5asa
n
ustekinumab_use
n
vedolizumab_responder
y
weeks_from_surgery
not provided
year_recent_bowel_surgery
not provided