Metagenome-assembled genome: SRR5382205_bin.1_metaWRAP_v1.1_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5382205 of study SRP102190.
ENA-FIRST-PUBLIC
2022-09-05
ENA-LAST-UPDATE
2022-09-05
External Id
SAMEA111315940
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-09-05T16:15:57Z
INSDC last update
2022-09-05T16:15:57Z
INSDC status
public
Submitter Id
SRR5382205_bin.1_metaWRAP_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.1
broad-scale environmental context
Mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2009-01-01
completeness score
66.55
completeness software
CheckM
contamination score
1.18
environmental medium
Cecum
geographic location (country and/or sea)
USA
geographic location (latitude)
32.2217
geographic location (longitude)
-110.9264
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
Digestive tube
metagenomic source
mouse gut metagenome
project name
Raw DNA and RNA sequences from bacterial content of mouse cecum were generated to identify species and functions associated with colorectal cancer.
sample derived from
SAMN06618380
sample name
SRR5382205_bin.1_metaWRAP_v1.1_MAG
sequencing method
Illumina HiSeq 2500
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus murinus
taxonomic identity marker
multi-marker approach