SARS-CoV-2 Genome sequencing and assembly - HELIX
Isolate
SARS-CoV-2/Human/USA/GA-CDC-STM-000037837/2021
collected_by
Helix
collection_date
2021-03-17
isolation_source
nasal
geo_loc_name
USA: Georgia
lat_lon
missing
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
26
,host_race
Black or African American
host_anatomical_part
Nasal
collection_device
Swabs
collection_method
Swabs
diagnostic_gene_name_1
ms2
diagnostic_pcr_protocol_1
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_1
29.166051865
diagnostic_gene_name_2
n gene
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_2
20.270992279
diagnostic_gene_name_3
orf1ab
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_3
20.806343079
lineage/clade name
B.1.1.7
BioSampleModel
SARS-CoV-2: clinical or host-associated