CDC Sars CoV2 Sequencing Baseline Constellation
Isolate
SARS-CoV-2/Human/USA/FL-CDC-STM-000716579/2021
collected_by
'Helix'
collection_date
2021-08-01
isolation_source
nasal swab
geo_loc_name
USA: Florida
host
Homo sapiens
host_disease
COVID-19
host_sex
female
host_age
20
host_race
White
collection_device
Nasal swab
collection_method
Nasal swab
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N
diagnostic_pcr_protocol_1
Helix COVID-19 Test
diagnostic_pcr_Ct_value_1
29.9861755371094
diagnostic_gene_name_2
ORF1ab
diagnostic_pcr_protocol_2
Helix COVID-19 Test
diagnostic_pcr_Ct_value_2
31.3803100585938
diagnostic_gene_name_3
S
diagnostic_pcr_protocol_3
Helix COVID-19 Test
diagnostic_pcr_Ct_value_3
30.7377223968506
lineage/clade name
AY.47
BioSampleModel
SARS-CoV-2: clinical or host-associated