Novel nidovirus assembly from SRS3534587
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better.
assembly software
coronaSPAdes;3.15
collecting institution
See sample listed under 'sample_derived_from' for metadata.
collector name
See sample listed under 'sample_derived_from' for metadata.
geographic location
not applicable
host common name
See sample listed under 'sample_derived_from' for metadata.
host health state
See sample listed under 'sample_derived_from' for metadata.
host scientific name
See sample listed under 'sample_derived_from' for metadata.
host sex
Not applicable
host subject id
See sample listed under 'sample_derived_from' for metadata.
investigation type
transcriptomic
isolate
See sample listed under 'sample_derived_from' for metadata.
predicted genome structure
segmented
predicted genome type
ssRNA(+)
project name
Serratus Project
relevant electronic resources
https://serratus.io
relevant standard operating procedures
https://www.biorxiv.org/content/10.1101/2020.08.07.241729v2
sample derived from
SRS3534587
SRA Run ID
SRR7507741
viral identification software
Bespoke software involving PalmScan, DIAMOND, and coronaSPAdes.
ENA-FIRST-PUBLIC
2021-12-23
ENA-LAST-UPDATE
2021-12-23