This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12358624 of study SRP274524.
ENA-FIRST-PUBLIC
2022-10-13T16:34:15Z
ENA-LAST-UPDATE
2022-10-13T16:34:15Z
External Id
SAMEA111465571
INSDC center name
EMG
INSDC first public
2022-10-13T16:34:15Z
INSDC last update
2022-10-13T16:34:15Z
INSDC status
public
Submitter Id
SRR12358624_bin.5_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EBI-EMG
collection date
2012-04-01
completeness score
84.7
completeness software
CheckM
contamination score
0.88
environmental medium
feces
geographic location (country and/or sea)
Japan
geographic location (latitude)
35.6762
geographic location (longitude)
139.6503
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Effects of Fructooligosaccharides (FOS) on gut microbiota
sample derived from
SAMN15684103
sample name
SRR12358624_bin.5_metawrap_v1.3_MAG
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity marker
multi-marker approach