This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6727992 of study SRP132896.
ENA-FIRST-PUBLIC
2022-10-13T12:29:00Z
ENA-LAST-UPDATE
2022-10-13T12:29:00Z
External Id
SAMEA111463821
INSDC center name
EMG
INSDC first public
2022-10-13T12:29:00Z
INSDC last update
2022-10-13T12:29:00Z
INSDC status
public
Submitter Id
SRR6727992_bin.1_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Fish digestive system
broker name
EBI-EMG
collection date
2017-04-01
completeness score
51.23
completeness software
CheckM
contamination score
0.0
environmental medium
Gut content
geographic location (country and/or sea)
USA
geographic location (latitude)
37.824673
geographic location (longitude)
-121.59569
investigation type
metagenome-assembled genome
isolation_source
fish metagenome
local environmental context
Gut
metagenomic source
fish metagenome
project name
The goal of this project is to investigate prey items of an endangered fish species, Delta Smelt Hypomesus transpacificus
sample derived from
SAMN08180268
sample name
SRR6727992_bin.1_metaWRAP_v1.3_MAG
scientific_name
Shewanella putrefaciens
sequencing method
Illumina MiSeq
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales;f__Shewanellaceae;g__Shewanella;s__Shewanella putrefaciens
taxonomic identity marker
multi-marker approach