collection_date
2022-09-14
geo_loc_name
USA: New Mexico
isolation_source
wastewater
ww_sample_duration
24
ww_sample_matrix
raw wastewater
ww_sample_type
composite
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_known_present
yes
collected_by
New Mexico State University - Las Cruces
purpose_of_ww_sampling
public health surveillance community-level
ww_temperature
25
purpose_of_ww_sequencing
Community Surveillance for SARS-CoV-2 Variants
sequenced_by
New Mexico State University - Las Cruces
ww_endog_control_1
crAssphage
ww_endog_control_1_conc
15.56
ww_endog_control_1_units
cycles (Ct value)
ww_surv_target_1_gene
N gene (N1)
ww_surv_target_1_protocol
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_2
SARS-CoV-2
ww_surv_target_2_conc_unit
cycles (Ct value)
ww_surv_target_2_gene
N gene (N2)
ww_surv_target_2_known_present
no
extraction_method
Qiagen allprep powerviral DNA/RNA kit
ww_surv_target_1_conc
39.54
ww_surv_target_1_conc_unit
cycles (Ct value)
ww_surv_jurisdiction
NM
specimen_processing
Not Applicable
ww_population
40000
ww_sample_site
wastewater treatment plant
collection_site_id
WW-NMLCEM
concentration_method
peg precipitation + ultracentrifugation
project_name
GenomeTrakr; LFFM ww project
ww_flow
3800000
extraction_control
murine norovirus
collection_volume
1 L
ww_surv_target_2_conc
Non-detect
ww_population_source
population of jurisdiction encompassing the wastewater service area
ww_endog_control_1_protocol
RT-qPCR Detection of Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
BioSampleModel
SARS-CoV-2: wastewater surveillance