This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6311991 of study SRP125370.
ENA-FIRST-PUBLIC
2022-10-13T12:28:59Z
ENA-LAST-UPDATE
2022-10-13T12:28:59Z
External Id
SAMEA111464546
INSDC center name
EMG
INSDC first public
2022-10-13T12:28:59Z
INSDC last update
2022-10-13T12:28:59Z
INSDC status
public
Submitter Id
SRR6311991_bin.2_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EBI-EMG
collection date
not provided
completeness score
60.37
completeness software
CheckM
contamination score
0.71
environmental medium
Saliva
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human saliva metagenome
local environmental context
Oral cavity
metagenomic source
human saliva metagenome
project name
12 members from 34th indian scientific expedition to Antartica (34th ISEA) were enrolled for study for 3 months. In this study we analysed the oral microbiota of expedition member by Next Generation Sequencing techniques (NGS). We investigated the influence of seq-voyage and stay at Antartica, on the oral health of indian expedition member. Saliva samples were collected from 12 expedition members at 3 different time points viz. Before start of the journey, after the completetion of voyage and at the end at the stay at Antartica. samples were analysed for Whole Genome and 16s RNA Sequencing.
sample derived from
SAMN08048866
sample name
SRR6311991_bin.2_metaWRAP_v1.3_MAG
scientific_name
uncultured Prevotella sp.
sequencing method
Illumina HiSeq 2500
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__
taxonomic identity marker
multi-marker approach