collection_date
2022-07-19
geo_loc_name
USA: Mississippi
isolation_source
wastewater
collection_site_id
PAS
ww_population
36969
ww_sample_duration
0
ww_sample_matrix
raw wastewater
ww_sample_type
grab
collection_volume
4L
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_known_present
yes
collected_by
FDA Center for Food Safety and Applied Nutrition
purpose_of_ww_sampling
public health surveillance community-level
ww_flow
Not Collected
ww_industrial_effluent_percent
Not Collected
ww_ph
7.22
ww_population_source
EPA Echo DMR
ww_pre_treatment
Not Provided
ww_sample_site
wastewater treatment plant
ww_temperature
Not Collected
ww_total_suspended_solids
0
purpose_of_ww_sequencing
detection of target organism by RT PCR or ddPCR
ww_endog_control_1
crAssphage
ww_endog_control_1_conc
Not Provided
ww_endog_control_1_protocol
RT-qPCR Detectionof Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
ww_endog_control_1_units
Not Provided
ww_endog_control_2
Not Applicable
ww_surv_target_1_gene
N gene (N1)
ww_surv_target_1_protocol
RT-qPCR Detectionof SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_2
SARS CoV 2
ww_surv_target_2_conc
5600
ww_surv_target_2_conc_unit
MPN genomic copies/L
ww_surv_target_2_gene
N gene (N2)
ww_surv_target_2_known_present
yes
concentration_method
peg precipitation + ultracentrifugation
extraction_control
Murine norovirus
extraction_method
qiagen rneasy kit
project_name
GenomeTrakr
ww_surv_target_1_conc
13000
ww_surv_target_1_conc_unit
MPN genomic copies/L
ww_surv_jurisdiction
Not Provided
ww_primary_sludge_retention_time
Not Collected
ww_processing_protocol
Not Provided
ww_sample_salinity
Not Collected
lat_lon
missing
ww_surv_system_sample_id
CFSANSMP000119707
ProjectAccession
PRJNA757447
sample_name
220719PI-87_rep1
specimen_processing
biological replicate
specimen_processing_details
Not Provided
specimen_processing_id
220719PI-87_rep1
sample_title
SARS-CoV-2: wastewater surveillance
organism
wastewater metagenome
ww_endog_control_2_conc
Not Applicable
ww_endog_control_2_units
Not Applicable
BioSampleModel
SARS-CoV-2: wastewater surveillance