This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR9465710 of study ERP136672.
ENA-FIRST-PUBLIC
2022-10-13T16:34:13Z
ENA-LAST-UPDATE
2022-10-13T16:34:13Z
External Id
SAMEA111464861
INSDC center name
EMG
INSDC first public
2022-10-13T16:34:13Z
INSDC last update
2022-10-13T16:34:13Z
INSDC status
public
Submitter Id
ERR9465710_bin.66_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EBI-EMG
collection date
not provided
completeness score
78.58
completeness software
CheckM
contamination score
0.92
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Comparison of the effect of Doxycycline and 9-tert-Butyl Doxycycline (9-TB) on the gut microbiome of mice with and without Influenza infection using whole metagenome sequencing of longitudinal fecal samples.
sample derived from
SAMEA13832868
sample name
ERR9465710_bin.66_metawrap_v1.3_MAG
scientific_name
uncultured Eggerthellaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__;s__
taxonomic identity marker
multi-marker approach