Metagenome-assembled genome: SRR13169476_bin.9_metawrap_v1.3_MAG
ENA-FIRST-PUBLIC
2022-10-17
ENA-LAST-UPDATE
2022-10-17
External Id
SAMEA111477456
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-17T00:34:45Z
INSDC last update
2022-10-17T00:34:45Z
INSDC status
public
Submitter Id
SRR13169476_bin.9_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2016-01-08
completeness score
97.36
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.39
geographic location (longitude)
2.17
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Effect of Down Syndrome genotype on mouse microbiome
sample derived from
SAMN09273605
sample name
SRR13169476_bin.9_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 2500
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__
taxonomic identity marker
multi-marker approach