CDC Sars CoV2 Sequencing Baseline Constellation
Isolate
SARS-CoV-2/Human/USA/IL-CDC-ASC210012308/2021
collected_by
Aegis Sciences Corporation
collection_date
2021-03-19
isolation_source
Nasal - Anterior Nares
geo_loc_name
USA: Illinois
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
22
host_race
White
collection_device
Nasal - Anterior Nares
collection_method
Nasal - Anterior Nares
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N gene
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_1
19.202908
diagnostic_gene_name_2
S gene
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_2
18.929985
diagnostic_gene_name_3
ORF1ab
diagnostic_pcr_protocol_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_3
18.535833
lineage/clade name
B.1.427
BioSampleModel
SARS-CoV-2: clinical or host-associated