Metagenome-assembled genome: SRR12464019_bin.7_metawrap_v1.3_MAG
ENA-FIRST-PUBLIC
2022-10-16
ENA-LAST-UPDATE
2022-10-16
External Id
SAMEA111477427
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-16T20:28:46Z
INSDC last update
2022-10-16T20:28:46Z
INSDC status
public
Submitter Id
SRR12464019_bin.7_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
94.38
completeness software
CheckM
contamination score
1.12
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Fecal DNA from 6-week old C57BL/6J WT mice fed with either normal chow diet (LabDiet 5053) or 45% fat high fat diet (ResearchDiets D12451) for 10 weeks
sample derived from
SAMN15834561
sample name
SRR12464019_bin.7_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 4000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;s__
taxonomic identity marker
multi-marker approach