Metagenome-assembled genome: ERR5094905_bin.3_metaWRAP_v1.3_MAG
ENA-FIRST-PUBLIC
2022-10-16
ENA-LAST-UPDATE
2022-10-16
External Id
SAMEA111477207
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-16T20:28:45Z
INSDC last update
2022-10-16T20:28:45Z
INSDC status
public
Submitter Id
ERR5094905_bin.3_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Rainbow trout digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
96.79
completeness software
CheckM
contamination score
1.28
environmental medium
Gut content
geographic location (country and/or sea)
Poland
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
fish gut metagenome
local environmental context
Gut
metagenomic source
fish gut metagenome
project name
Shotgun metagenomics sequencing results for intestinal samples collected from rainbow trout farms in three European countries.
sample derived from
SAMEA7816560
sample name
ERR5094905_bin.3_metaWRAP_v1.3_MAG
sequencing method
NextSeq 550
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Chromobacteriaceae;g__Deefgea;s__
taxonomic identity marker
multi-marker approach