Metagenome-assembled genome: SRR7610115_bin.1_metaWRAP_v1.3_MAG
ENA-FIRST-PUBLIC
2022-10-17
ENA-LAST-UPDATE
2022-10-17
External Id
SAMEA111477429
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-17T00:34:45Z
INSDC last update
2022-10-17T00:34:45Z
INSDC status
public
Submitter Id
SRR7610115_bin.1_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Fish digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2016-03-23
completeness score
92.95
completeness software
CheckM
contamination score
1.01
environmental medium
Gut content
geographic location (country and/or sea)
Brazil
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
fish gut metagenome
local environmental context
Gut
metagenomic source
fish gut metagenome
project name
Influence of florfenicol, a broad-spectrum fluorine derivative of chloramphenicol, which is one of the most frequently used antibiotic in aquaculture, on the composition, function and distribution of ARGs and MGEs in the gut microbiome of Piaractus mesopotamicus,
sample derived from
SAMN09711566
sample name
SRR7610115_bin.1_metaWRAP_v1.3_MAG
sequencing method
Illumina MiSeq
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__
taxonomic identity marker
multi-marker approach