CDC Sars CoV2 Sequencing Baseline Constellation
Isolate
SARS-CoV-2/Human/USA/OK-CDC-ASC210068443/2021
collected_by
Aegis Sciences Corporation
collection_date
2021-04-11
isolation_source
Nasal - Anterior Nares
geo_loc_name
USA: Oklahoma
host
Homo sapiens
host_disease
COVID-19
host_sex
female
host_age
19
host_race
White
collection_device
Nasal - Anterior Nares
collection_method
Nasal - Anterior Nares
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N gene
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_1
10.859745
diagnostic_gene_name_2
S gene
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_2
Unknown
diagnostic_gene_name_3
ORF1ab
diagnostic_pcr_protocol_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_Ct_value_3
12.573141
lineage/clade name
B.1.1.7
BioSampleModel
SARS-CoV-2: clinical or host-associated