Metagenome-assembled genome: SRR13169508_bin.1_metawrap_v1.3_MAG
assembly software
metaSPAdes v3.15.3
broad-scale environmental context
mouse digestive system
collection date
2016-01-08
sample derived from
SAMN09273618
geographic location (longitude)
2.17
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
contamination score
1.27
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__Blautia coccoides
ENA-FIRST-PUBLIC
2022-10-17T00:34:47Z
ENA-LAST-UPDATE
2022-10-17T00:34:47Z
completeness software
CheckM
geographic location (country and/or sea)
Spain
binning software
metawrap v1.3
organism
Blautia coccoides
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
99.36
environmental medium
feces
geographic location (latitude)
41.39
scientific_name
Blautia coccoides
common name
investigation type
metagenome-assembled genome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Effect of Down Syndrome genotype on mouse microbiome
sequencing method
Illumina HiSeq 2500
isolation_source
mouse gut metagenome
ENA-FIRST-PUBLIC
2022-10-17
ENA-LAST-UPDATE
2022-10-17