SARS-CoV-2 Genome sequencing and assembly - HELIX
Isolate
SARS-CoV-2/Human/USA/FL-CDC-STM-000039011/2021
collected_by
Helix
collection_date
2021-03-18
isolation_source
nasal
geo_loc_name
USA: Florida
lat_lon
missing
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
30
,host_race
White
host_anatomical_part
Nasal
collection_device
Swabs
collection_method
Swabs
diagnostic_gene_name_1
ms2
diagnostic_pcr_protocol_1
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_1
28.448596954
diagnostic_gene_name_2
n gene
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_2
15.561778069
diagnostic_gene_name_3
orf1ab
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_3
16.017614365
diagnostic_gene_name_4
s gene
diagnostic_pcr_protocol_4
ThermoFisher Taqpath Assay
diagnostic_pcr_Ct_value_4
16.550392151
lineage/clade name
B.1
BioSampleModel
SARS-CoV-2: clinical or host-associated