Metagenome-assembled genome: SRR19241959_bin.2_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR19241959 of study SRP375650.
ENA-FIRST-PUBLIC
2022-11-14
ENA-LAST-UPDATE
2022-11-14
External Id
SAMEA111545530
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-11-14T15:53:20Z
INSDC last update
2022-11-14T15:53:20Z
INSDC status
public
Submitter Id
SRR19241959_bin.2_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2016-09-01
completeness score
94.15
completeness software
CheckM
contamination score
1.36
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
42.0308
geographic location (longitude)
-93.6319
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Shotgun metagenomic sequencing of colon contents from gnotobiotic C3H/HeNTac mice harboring the altered Schaelder flora (ASF). Genomic DNA was sequencing on the Illumina HiSeq 4000 using 150-bp paired end sequencing. The ASF represent a consortium of eight murine bacterial species that have been used to study the microbiome.
sample derived from
SAMN28488135
sample name
SRR19241959_bin.2_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 4000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity marker
multi-marker approach