Metagenome-assembled genome: ERR3414579_bin.94_metaWRAP_v1.1_MAG
ENA first public
2022-02-16
ENA last update
2022-02-16
External Id
SAMEA13008995
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-02-16T16:33:18Z
INSDC last update
2022-02-16T16:33:18Z
INSDC status
public
Submitter Id
ERR3414579_bin.94_metaWRAP_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
IDBA-UD
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
99.44
completeness software
CheckM
contamination score
0.0
environment (biome)
Chicken digestive system
environment (feature)
Digestive tube
environment (material)
Cecum
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation source
chicken gut metagenome
metagenomic source
chicken gut metagenome
project name
We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.
sample derived from
SAMEA5754828
sample name
ERR3414579_bin.94_metaWRAP_v1.1_MAG
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach