assembly software
metaSPAdes v3.15.3
broad-scale environmental context
plant
collection date
2019-04-20
sample derived from
SAMN24114789
geographic location (longitude)
5.67
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
contamination score
0.73
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__;g__Mitsuaria;s__
ENA-FIRST-PUBLIC
2022-09-09T12:18:05Z
ENA-LAST-UPDATE
2022-09-09T12:18:05Z
completeness software
CheckM
geographic location (country and/or sea)
Netherlands
binning software
metawrap v1.3.0
organism
uncultured Mitsuaria sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
96.03
environmental medium
rhizosphere
geographic location (latitude)
51.98
scientific_name
uncultured Mitsuaria sp.
common name
investigation type
metagenome-assembled genome
local environmental context
tomato
metagenomic source
rhizosphere metagenome
project name
Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).
sequencing method
Illumina HiSeq 4000
isolation_source
rhizosphere metagenome
ENA-FIRST-PUBLIC
2022-09-09
ENA-LAST-UPDATE
2022-09-09