ENA-FIRST-PUBLIC
2022-07-08
ENA-LAST-UPDATE
2022-07-08
External Id
SAMEA110290075
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-07-08T12:18:16Z
INSDC last update
2022-07-08T12:18:16Z
INSDC status
public
Submitter Id
SRR11267074_bin.3_metawrap_v1.3.0_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3.0
broker name
EMG broker account, EMBL-EBI
collection date
2019-06-20
completeness score
96.01
completeness software
CheckM
contamination score
0.61
environment (biome)
honeybee
environment (feature)
digestive system
environment (material)
gut content
geographic location (country and/or sea)
China
geographic location (latitude)
30.15
geographic location (longitude)
120.1
investigation type
metagenome-assembled genome
isolation_source
honeybee metagenome
metagenomic source
honeybee metagenome
project name
metagenomic sequencing of Apis cerana and Apis mellifera colonies in China
sample derived from
SAMN13742503
sample name
SRR11267074_bin.3_metawrap_v1.3.0_MAG
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach