ENA-FIRST-PUBLIC
2022-10-19
ENA-LAST-UPDATE
2022-10-19
External Id
SAMEA111491511
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-19T12:28:19Z
INSDC last update
2022-10-19T12:28:19Z
INSDC status
public
Submitter Id
SRR11749285_bin.1_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Human reproductive system
broker name
EMG broker account, EMBL-EBI
collection date
2017-01-01
completeness score
100
completeness software
CheckM
contamination score
0.0
environmental medium
Vagina
geographic location (country and/or sea)
China
geographic location (latitude)
30.26
geographic location (longitude)
120.38
investigation type
metagenome-assembled genome
isolation_source
vaginal metagenome
local environmental context
Vagina
metagenomic source
vaginal metagenome
project name
to provide a comprehensive investigation describing the relationship between high-risk HPV16 infection and vaginal microbiome.
sample derived from
SAMN14859616
sample name
SRR11749285_bin.1_metaWRAP_v1.3_MAG
sequencing method
HiSeq X Ten
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Megasphaera;s__
taxonomic identity marker
multi-marker approach