Novel deltavirus assembly from SRS6882603
ENA first public
2021-12-01
ENA last update
2021-12-01
External Id
SAMEA11352035
INSDC center alias
Serratus Project
INSDC center name
Serratus Project
INSDC first public
2021-12-01T20:46:06Z
INSDC last update
2021-12-01T20:46:06Z
INSDC status
public
Submitter Id
ena-SAMPLE-TAB-30-11-2021-21:30:31:199-129
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better.
assembly software
rnaviralSPAdes;3.15
collection date
not collected
detection type
independent sequence (UViG)
environment (biome)
See sample listed under 'sample_derived_from' for metadata.
environment (feature)
See sample listed under 'sample_derived_from' for metadata.
environment(material)
See sample listed under 'sample_derived_from' for metadata.
geographic location (latitude)
not collected
geographic location (longitude)
not collected
investigation type
metatranscriptome
isolation source
See sample listed under 'sample_derived_from' for metadata.
metagenomic source
freshwater metagenome
predicted genome structure
non-segmented
predicted genome type
ssRNA(-)
project name
Serratus Project
relevant electronic resources
https://serratus.io
relevant standard operating procedures
https://www.biorxiv.org/content/10.1101/2020.08.07.241729v2
sample derived from
SRS6882603
sample name
ena-SAMPLE-TAB-30-11-2021-21:30:31:199-129
sequencing method
See sample listed under 'sample_derived_from' for metadata.
source of uvigs
metatranscriptome (not viral targeted)
viral identification software
Bespoke software involving INFERNAL, mFold, and rnaviralSPAdes.
virus enrichment approach
other