Metagenome-assembled genome: SRR8387719_bin.47_metaWRAP_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR8387719 of study SRP175061.
ENA-FIRST-PUBLIC
2022-10-21
ENA-LAST-UPDATE
2022-10-21
External Id
SAMEA111499103
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-21T20:21:52Z
INSDC last update
2022-10-21T20:21:52Z
INSDC status
public
Submitter Id
SRR8387719_bin.47_metaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.3
broad-scale environmental context
Sheep digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2016-02-18
completeness score
72.49
completeness software
CheckM
contamination score
2.69
environmental medium
Rumen content
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
sheep gut metagenome
local environmental context
Rumen
metagenomic source
sheep gut metagenome
project name
Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model.
sample derived from
SAMN10688360
sample name
SRR8387719_bin.47_metaWRAP_v1.3_MAG
sequencing method
HiSeq X Ten
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__;s__
taxonomic identity marker
multi-marker approach