3300027893_57
MAG recovered from marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54. Published in Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., ... & Eloe-Fadrosh, E. A. (2021). A genomic catalog of Earth�s microbiomes. Nature biotechnology, 39(4), 499-509.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232489
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
3300027893_57
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
IDBA-UD
binning parameters
Tetranucleotide-frequency
binning software
Tetranucleotide-frequency
broad-scale environmental context
marine benthic biome
collection date
2010-01-10
completeness score
59.7
completeness software
checkM
contamination score
0.06
environmental medium
marine sediment
geographic location (country and/or sea)
USA
geographic location (latitude)
34.6478111
geographic location (longitude)
-77.1112083
isolation_source
marine sediment
local environmental context
marine benthic feature
metagenomic source
marine sediment metagenome
project name
DOE Joint Genome Institute (JGI)
sample derived from
SRR5248173
sample name
3300027893_57
taxonomic identity marker
multi-marker approach