10781.Cage57.female.WT17; NKT cell- NASH murine model - Microbiome: study 1
WT
ENA first public
2021-11-15
ENA last update
2021-11-15
External Id
SAMEA10258512
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2021-11-15T20:53:27Z
INSDC last update
2021-11-15T20:53:27Z
INSDC status
public
Submitter Id
qiita_sid_10781:10781.Cage57.female.WT17
cage id
Cage57
collection method
Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.
collection_device
cotton swabs into sterile 0.6 ml Eppendorf tube
collection_timestamp
10/14/16 10:30
diet
Normal
dna_extracted
TRUE
elevation
193
elevation_units
meters
empo_1
Host-associated
empo_2
Animal
empo_3
Animal distal gut
env biome
urban biome
env feature
animal-associated habitat
env package
host-associated
env_material
feces
experimental group
WT-none
geo loc name
USA:CA,San Diego
host age
8
host body habitat
UBERON:feces
host body product
UBERON:feces
host body site
UBERON:feces
host common name
mouse
host life stage
adult
host scientific name
Mus musculus
host subject id
204
host taxid
10090
host weight
not provided
host_age_units
weeks
host_weight_units
g
iacuc_institute
UC San Diego
iacuc_protocol_id
S14223
latitude
32.842
latitude_units
Decimal degrees
life stage
adult
longitude
-117.258
longitude_units
Decimal degrees
metabolomics_filename
C18p_Plate3_GC6_01_10513.mzXML
miltefosine_treated
No
physical_specimen_location
Kumar Lab, UCSD
physical_specimen_remaining
TRUE
relative_ald_severity_score
0
relative_nash_severity_score
0
sample name
qiita_sid_10781:10781.Cage57.female.WT17
sample number
204
sample type
feces
sex
female
strain_background
C57BL/6
strain_background_common
B6
strain_genotype
WT
strain_vendor
Jackson
sulfatide
No
tazarotene_dose
0
tazarotene_treated
No
time point
not provided
treatment
WT-none
tube_id
Cage57.female.WT17