3300025550_6
MAG recovered from wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration (SAMN06267521). Published in Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., ... & Eloe-Fadrosh, E. A. (2021). A genomic catalog of Earth�s microbiomes. Nature biotechnology, 39(4), 499-509.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232483
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
3300025550_6
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes
binning parameters
Tetra-nucleotide, abundance
binning software
MetaBAT
broad-scale environmental context
marine biome
collection date
2013-09-24
completeness score
80.49
completeness software
checkM
contamination score
3.85
environmental medium
marine sediment
geographic location (country and/or sea)
USA
geographic location (latitude)
38.197227
geographic location (longitude)
-122.010124
isolation_source
marine sediment
local environmental context
coastal wetland ecosystem
metagenomic source
marine sediment metagenome
project name
DOE Joint Genome Institute (JGI)
sample derived from
SRS1995122
sample name
3300025550_6
taxonomic identity marker
multi-marker approach