TVG05_bin235
MAG recovered from deep-sea sediments from Sourthwest Indian Ocean. Published in Zheng, X., Dai, X., Zhu, Y., Yang, J., Jiang, H., Dong, H., & Huang, L. (2022). (Meta) Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota. Msystems, 7(4), e00228-22.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232490
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
TVG05_bin235
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes
binning parameters
Tetra-nucleotide, abundance, coverage, kmer
binning software
MetaBAT, MaxBin2
broad-scale environmental context
marine biome
collection date
2016-05-24
completeness score
95.05
completeness software
checkM
contamination score
4.4
environmental medium
marine sediment
geographic location (country and/or sea)
Indian Ocean
geographic location (latitude)
-34.8
geographic location (longitude)
54.37
isolation_source
marine sediment
local environmental context
marine benthic feature
metagenomic source
marine sediment metagenome
project name
National Key R&D Program of China
sample derived from
SRR10168433
sample name
TVG05_bin235
taxonomic identity marker
multi-marker approach