AQCAT2_sediment_2016_shotgun_metagenome
collection_date
2016-08-15
depth
top 2cm of stream bottom sediment at a water depth of 300 mm or less
env_broad_scale
freshwater river
env_local_scale
freshwater river
env_medium
stream sediment
geo_loc_name
USA:Great Smoky Mountains National Park
lat_lon
35.67 N 83.07 W
nucl_acid_ext
Qiagen Powersoil kit using aproximately 100 mg of sediment following the manufacturer instructions.
seq_method
Samples were prepared for dual indexed with Nextera XT indices and paired end sequencing on a NextSeq 500 using the Illumina Nextera XT kit. 1 ng input DNA from biological replicate 1 was used for input.
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water