IRC4_bin_13
MAG obtained from a sponge sample (Ircina ramosa) and published in Robbins, S. J., Song, W., Engelberts, J. P., Glasl, B., Slaby, B. M., Boyd, J., ... & Webster, N. S. (2021). A genomic view of the microbiome of coral reef demosponges. The ISME journal, 15(6), 1641-1654.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232477
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
IRC4_bin_13
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes
binning parameters
Tetra-nucleotide, abundance, coverage, kmer
binning software
UniteM
broad-scale environmental context
marine biome
collection date
2015-12-23
completeness score
93.14
completeness software
checkM
contamination score
3.3
environmental medium
sponge
geographic location (country and/or sea)
Australia
geographic location (latitude)
-18.832467
geographic location (longitude)
147.63325
isolation_source
sponge
local environmental context
marine benthic feature
metagenomic source
sponge metagenome
project name
Illumina and the Earth Microbiome Project
sample derived from
SRR10996928
sample name
IRC4_bin_13
taxonomic identity marker
multi-marker approach