Metagenome-assembled genome: SRR13827526_bin.11_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13827526 of study SRP308864.
ENA-FIRST-PUBLIC
2022-10-21
ENA-LAST-UPDATE
2022-10-21
External Id
SAMEA111497110
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-21T12:25:30Z
INSDC last update
2022-10-21T12:25:30Z
INSDC status
public
Submitter Id
SRR13827526_bin.11_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2018-04-19
completeness score
71.38
completeness software
CheckM
contamination score
1.96
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
43.043
geographic location (longitude)
-88.0221
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
In this study, we sought to investigate the hypothesis that dietary nicotinamide riboside supplementation alters the murine gut microbiome to mediate diet-induced weight gain deflection. To test this hypothesis, we fed C57BL6J males a high-fat diet supplemented with or without NR and then performed a fecal material transplant into naive recipients.
sample derived from
SAMN18043931
sample name
SRR13827526_bin.11_metawrap_v1.3_MAG
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity marker
multi-marker approach