Metagenome-assembled genome: SRR15431188_bin.1_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15431188 of study SRP332348.
ENA-FIRST-PUBLIC
2022-11-18
ENA-LAST-UPDATE
2022-11-18
External Id
SAMEA112147266
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-11-18T20:20:10Z
INSDC last update
2022-11-18T20:20:10Z
INSDC status
public
Submitter Id
SRR15431188_bin.1_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
not provided
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2021-02-01
completeness score
76.5
completeness software
CheckM
contamination score
0.59
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
39.6
geographic location (longitude)
117.28
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Diet can usually cause changes in the intestinal microbiota, many of which contain one or more antibiotic resistance genes. Therefore, different diets will also have an impact on the intestinal antibiotic resistance genome. Here we share the changes of intestinal antibiotic resistant genome and bacterial microbiota under the effects of high-sugar, high-fat, high-protein diet and normal diet.
sample derived from
SAMN20708343
sample name
SRR15431188_bin.1_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 4000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter hepaticus
taxonomic identity marker
multi-marker approach