Metagenome-assembled genome: SRR15730542_bin.26_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15730542 of study SRP335854.
ENA-FIRST-PUBLIC
2022-12-15
ENA-LAST-UPDATE
2022-12-15
External Id
SAMEA112234096
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-12-15T16:21:25Z
INSDC last update
2022-12-15T16:21:25Z
INSDC status
public
Submitter Id
SRR15730542_bin.26_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
not provided
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2020-12-01
completeness score
91.62
completeness software
CheckM
contamination score
0.63
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
We performed a deep whole metagenomic shotgun sequencing on mouse samples. Metagenomic de-novo assembly was performed on the samples.
sample derived from
SAMN21237118
sample name
SRR15730542_bin.26_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 4000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Dorea;s__
taxonomic identity marker
multi-marker approach