3300027962_15
MAG recovered from marine sediment microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1. Published in Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., ... & Eloe-Fadrosh, E. A. (2021). A genomic catalog of Earth�s microbiomes. Nature biotechnology, 39(4), 499-509.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232488
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
3300027962_15
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes
binning parameters
Tetra-nucleotide, abundance
binning software
MetaBAT
broad-scale environmental context
marine benthic biome
collection date
2012-02-10
completeness score
96.15
completeness software
checkM
contamination score
4.4
environmental medium
marine sediment
geographic location (country and/or sea)
Puerto Rico
geographic location (latitude)
17.951083
geographic location (longitude)
-67.193167
isolation_source
marine sediment
local environmental context
marine benthic feature
metagenomic source
marine sediment metagenome
project name
DOE Joint Genome Institute (JGI)
sample derived from
SRR6201607
sample name
3300027962_15
taxonomic identity marker
multi-marker approach