3300026127_2
MAG recovered from soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG. Published in Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., ... & Eloe-Fadrosh, E. A. (2021). A genomic catalog of Earth�s microbiomes. Nature biotechnology, 39(4), 499-509.
ENA-FIRST-PUBLIC
2022-12-14
ENA-LAST-UPDATE
2022-12-14
External Id
SAMEA112232486
INSDC center alias
University of Alicante
INSDC center name
university of alicante
INSDC first public
2022-12-14T16:24:04Z
INSDC last update
2022-12-14T16:24:04Z
INSDC status
public
Submitter Id
3300026127_2
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes
binning parameters
Tetra-nucleotide, abundance
binning software
MetaBAT
broad-scale environmental context
terrestrial biome
collection date
2014-07-11
completeness score
96.7
completeness software
checkM
contamination score
3.3
environmental medium
soil
geographic location (country and/or sea)
USA
geographic location (latitude)
37.496
geographic location (longitude)
-122.1329
isolation_source
soil
local environmental context
wetland area
metagenomic source
soil metagenome
project name
DOE Joint Genome Institute (JGI)
sample derived from
SRR5210316
sample name
3300026127_2
taxonomic identity marker
multi-marker approach