Metagenome-assembled genome: SRR14862899_bin.34_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14862899 of study SRP324646.
ENA-FIRST-PUBLIC
2022-10-22
ENA-LAST-UPDATE
2022-10-22
External Id
SAMEA111499813
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-22T00:46:25Z
INSDC last update
2022-10-22T00:46:25Z
INSDC status
public
Submitter Id
SRR14862899_bin.34_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
97.1
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
The study was to characterize young and old male C57bl/6 mice gut microbiome and identify aging-specific metabolic features by whole genome sequencing.
sample derived from
SAMN19774677
sample name
SRR14862899_bin.34_metawrap_v1.3_MAG
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__
taxonomic identity marker
multi-marker approach