Metagenome-assembled genome: SRR13921779_bin.32_metawrap_v1.3_MAG
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13921779 of study SRP310062.
ENA-FIRST-PUBLIC
2022-12-15
ENA-LAST-UPDATE
2022-12-15
External Id
SAMEA112228130
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-12-15T16:21:23Z
INSDC last update
2022-12-15T16:21:23Z
INSDC status
public
Submitter Id
SRR13921779_bin.32_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
not provided
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2012-04-01
completeness score
80.16
completeness software
CheckM
contamination score
4.34
environmental medium
feces
geographic location (country and/or sea)
Japan
geographic location (latitude)
35.6762
geographic location (longitude)
139.6503
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Gut micrbiota dysbiosis associated with PIGA gene (responsible for GPI anchor biosynthesis)
sample derived from
SAMN18221102
sample name
SRR13921779_bin.32_metawrap_v1.3_MAG
sequencing method
Illumina HiSeq 2000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__
taxonomic identity marker
multi-marker approach