assembly software
not provided
broad-scale environmental context
mouse digestive system
collection date
2019-06-17
sample derived from
SAMN25209841
geographic location (longitude)
not provided
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
contamination score
0.0
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelatoclostridium;s__
ENA-FIRST-PUBLIC
2022-12-15T16:21:27Z
ENA-LAST-UPDATE
2022-12-15T16:21:27Z
completeness software
CheckM
geographic location (country and/or sea)
China
binning software
metawrap v1.3
organism
uncultured Erysipelatoclostridium sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
93.35
environmental medium
feces
geographic location (latitude)
not provided
scientific_name
uncultured Erysipelatoclostridium sp.
common name
investigation type
metagenome-assembled genome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Fecal sample of CT-26 tumor-bearing mice treated with different clinical treatment
sequencing method
Illumina NovaSeq 6000
isolation_source
mouse gut metagenome
ENA-FIRST-PUBLIC
2022-12-15
ENA-LAST-UPDATE
2022-12-15