marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702064
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_146
air_pressure
996
air_temperature
5.9
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.61
ammonium_NH4_10m
1.28
ammonium_NH4_5m
1.43
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.8
chlorophyll_a_10m
0.3
chlorophyll_a_5m
0.3
cloud_observation
7
collection date
2019-12-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25983
geographic location (longitude)
11.43567
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
5.27
nitrate_NO3_10m
4.16
nitrate_NO3_5m
4.64
nitrite+nitrate_NO2+NO3_0-1m
5.47
nitrite+nitrate_NO2+NO3_10m
4.34
nitrite+nitrate_NO2+NO3_5m
4.83
nitrite_NO2_0-1m
0.2
nitrite_NO2_10m
0.18
nitrite_NO2_5m
0.19
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.46
phosphate_PO4_10m
0.47
phosphate_PO4_5m
0.47
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
25.11
salinity_CTD_10m
28.87
salinity_CTD_5m
26.52
salinity_average
26.83
sample name
P20107_146
sample_DNA_concentration
16.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
10.2
silicate_SiO3_10m
6.1
silicate_SiO3_5m
7.3
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.1
temperature_water_CTD_10m
7.44
temperature_water_CTD_5m
6.63
total_nitrogen_0-1m
NA
total_nitrogen_10m
NA
total_nitrogen_5m
NA
total_phosphorus_0-1m
NA
total_phosphorus_10m
NA
total_phosphorus_5m
NA
water_depth
76
wave_observation
2
weather_observation
1
wind_direction
16
wind_speed
9