marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701756
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20310_184
air_pressure
1026
air_temperature
3.6
alkalinity_0-1m
2.109
alkalinity_10m
2.146
alkalinity_5m
2.122
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.3
chlorophyll_a_10m
4
chlorophyll_a_5m
3.3
cloud_observation
8
collection date
2020-02-07
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.6685
geographic location (longitude)
12.11065
humic_substance_0-1m
5.1
humic_substance_10m
5.2
humic_substance_5m
5.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
4.68
nitrate_NO3_10m
4.59
nitrate_NO3_5m
4.54
nitrite+nitrate_NO2+NO3_0-1m
4.86
nitrite+nitrate_NO2+NO3_10m
4.71
nitrite+nitrate_NO2+NO3_5m
4.71
nitrite_NO2_0-1m
0.18
nitrite_NO2_10m
0.12
nitrite_NO2_5m
0.17
origin
SMHI
pH_0-1m
8.14
pH_10m
8.13
pH_5m
8.13
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.47
phosphate_PO4_10m
0.48
phosphate_PO4_5m
0.47
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
25.43
salinity_CTD_10m
26.02
salinity_CTD_5m
25.57
salinity_average
25.67
sample name
P20310_184
sample_DNA_concentration
6.13
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
5.9
silicate_SiO3_10m
4.8
silicate_SiO3_5m
5.8
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
5.21
temperature_water_CTD_10m
5.4
temperature_water_CTD_5m
5.24
total_nitrogen_0-1m
18
total_nitrogen_10m
17.1
total_nitrogen_5m
18
total_phosphorus_0-1m
0.88
total_phosphorus_10m
0.84
total_phosphorus_5m
0.86
water_depth
62
wave_observation
2
weather_observation
2
wind_direction
17
wind_speed
7