marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701725
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_153
air_pressure
996
air_temperature
5.5
alkalinity_0-1m
2.151
alkalinity_10m
2.141
alkalinity_5m
2.157
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.8
chlorophyll_a_10m
4
chlorophyll_a_5m
3.9
cloud_observation
9
collection date
2019-01-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.6
dissolved_oxygen_O2_CTD_10m
7.6
dissolved_oxygen_O2_CTD_5m
7.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66867
geographic location (longitude)
12.11135
humic_substance_0-1m
4
humic_substance_10m
4
humic_substance_5m
4.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
1.74
nitrate_NO3_10m
1.72
nitrate_NO3_5m
1.74
nitrite+nitrate_NO2+NO3_0-1m
1.79
nitrite+nitrate_NO2+NO3_10m
1.77
nitrite+nitrate_NO2+NO3_5m
1.79
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
SMHI
pH_0-1m
8.09
pH_10m
8.1
pH_5m
8.11
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.29
phosphate_PO4_10m
0.29
phosphate_PO4_5m
0.29
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
25.66
salinity_CTD_10m
25.98
salinity_CTD_5m
25.66
salinity_average
25.77
sample name
P20310_153
sample_DNA_concentration
21.5
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.8
silicate_SiO3_10m
2.8
silicate_SiO3_5m
2.8
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.32
temperature_water_CTD_10m
4.37
temperature_water_CTD_5m
4.32
total_nitrogen_0-1m
15.1
total_nitrogen_10m
15.3
total_nitrogen_5m
14.8
total_phosphorus_0-1m
0.75
total_phosphorus_10m
0.64
total_phosphorus_5m
0.68
water_depth
63
wave_observation
9
weather_observation
9
wind_direction
27
wind_speed
13