marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701838
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4.3
Submitter Id
P20310_272
air_pressure
NA
air_temperature
18
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.22
ammonium_NH4_10m
2.03
ammonium_NH4_5m
1.23
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.51
chlorophyll_a_10m
1.18
chlorophyll_a_5m
2.83
cloud_observation
4
collection date
2019-08-13
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
5.99
dissolved_oxygen_O2_CTD_10m
5.55
dissolved_oxygen_O2_CTD_5m
5.95
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.98367
geographic location (longitude)
17.72433
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.38
nitrite+nitrate_NO2+NO3_10m
0.67
nitrite+nitrate_NO2+NO3_5m
0.37
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.23
phosphate_PO4_5m
0.12
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.89
salinity_CTD_10m
5.87
salinity_CTD_5m
5.89
salinity_average
5.88
sample name
P20310_272
sample_DNA_concentration
6.13
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
13.72
silicate_SiO3_10m
14.81
silicate_SiO3_5m
13.71
station_ID
265221
station_name
H4
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
19.1
temperature_water_CTD_10m
18.45
temperature_water_CTD_5m
19.02
total_nitrogen_0-1m
28.23
total_nitrogen_10m
27.29
total_nitrogen_5m
28.46
total_phosphorus_0-1m
0.77
total_phosphorus_10m
0.77
total_phosphorus_5m
0.77
water_depth
30
wave_observation
1
weather_observation
1
wind_direction
23
wind_speed
5