marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702228
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
3
Submitter Id
P20107_322
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.11
ammonium_NH4_10m
0.08
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.24
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-05-14
conductivity_CTD_0-1m
226
conductivity_CTD_10m
253
conductivity_CTD_5m
226
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.58
dissolved_oxygen_O2_CTD_10m
8.89
dissolved_oxygen_O2_CTD_5m
9.23
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.72983
geographic location (longitude)
22.44767
humic_substance_0-1m
24.4
humic_substance_10m
NA
humic_substance_5m
24.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
5.28
nitrate_NO3_10m
6.03
nitrate_NO3_5m
5.28
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.14
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.13
origin
UMU
pH_0-1m
7.6
pH_10m
7.6
pH_5m
7.6
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.04
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.077
salinity_CTD_10m
2.392
salinity_CTD_5m
2.083
salinity_average
2.18
sample name
P20107_322
sample_DNA_concentration
10.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
58.75
silicate_SiO3_10m
53.76
silicate_SiO3_5m
58.39
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.433
temperature_water_CTD_10m
1.771
temperature_water_CTD_5m
2.358
total_nitrogen_0-1m
19.78
total_nitrogen_10m
19.35
total_nitrogen_5m
19.78
total_phosphorus_0-1m
0.24
total_phosphorus_10m
0.21
total_phosphorus_5m
0.25
water_depth
13
wave_observation
1
weather_observation
1
wind_direction
27
wind_speed
3