marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701903
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20310_343
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.198
alkalinity_10m
1.243
alkalinity_5m
1.226
ammonium_NH4_0-1m
0.07
ammonium_NH4_10m
0.06
ammonium_NH4_5m
0.06
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.16
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-07-08
conductivity_CTD_0-1m
621
conductivity_CTD_10m
640
conductivity_CTD_5m
631
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.2
dissolved_oxygen_O2_CTD_10m
8.09
dissolved_oxygen_O2_CTD_5m
7.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86333
geographic location (longitude)
18.26283
humic_substance_0-1m
12.1
humic_substance_10m
NA
humic_substance_5m
11.3
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.21
nitrate_NO3_10m
0.2
nitrate_NO3_5m
0.19
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.04
origin
UMU
pH_0-1m
8.3
pH_10m
8.3
pH_5m
8.3
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.03
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.636
salinity_CTD_10m
4.879
salinity_CTD_5m
4.756
salinity_average
4.76
sample name
P20310_343
sample_DNA_concentration
5.67
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
24.71
silicate_SiO3_10m
23.53
silicate_SiO3_5m
24.03
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
11.832
temperature_water_CTD_10m
11.13
temperature_water_CTD_5m
11.508
total_nitrogen_0-1m
19.35
total_nitrogen_10m
20.06
total_nitrogen_5m
19.49
total_phosphorus_0-1m
0.38
total_phosphorus_10m
0.41
total_phosphorus_5m
0.39
water_depth
83
wave_observation
1
weather_observation
1
wind_direction
2
wind_speed
3