fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
47962196
experiment
chicken1
Sample_description
CR-64
Reactor
CR
Treatment
UNTREATED
Day_of_Connection
64
Day_of_Treatment
48
Day_from_Inoculum
87
Phase
Treat
Treatment2
UNTREATED
Date
NA
Reactor_Treatment
CR_UNTREATED
Reactor_F1_F2
CR_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
32600000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
NA
Antibiotic
NA
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.546
Lactat_mM
0
Formiat_mM
0
Acetat_mM
75.009
Propionat_mM
11.518
Isobutyrat_mM
7.914
Butyrat_mM
36.797
Isovalerat_mM
4.585
Valerat_mM
6.461
Total_SCFA_mM
142.83
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated