marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701683
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_111
air_pressure
1010
air_temperature
16.2
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.4
chlorophyll_a_10m
4.2
chlorophyll_a_5m
3.4
cloud_observation
2
collection date
2019-07-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.8
dissolved_oxygen_O2_CTD_10m
7.2
dissolved_oxygen_O2_CTD_5m
7.8
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.55528
geographic location (longitude)
18.40023
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.1
phosphate_PO4_10m
0.09
phosphate_PO4_5m
0.1
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.32
salinity_CTD_10m
7.31
salinity_CTD_5m
7.32
salinity_average
7.32
sample name
P20310_111
sample_DNA_concentration
18.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
13.2
silicate_SiO3_10m
13.2
silicate_SiO3_5m
13.2
station_ID
263953
station_name
BCS_III-10
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
16.65
temperature_water_CTD_10m
15.38
temperature_water_CTD_5m
16.67
total_nitrogen_0-1m
24.5
total_nitrogen_10m
23.3
total_nitrogen_5m
26.2
total_phosphorus_0-1m
0.78
total_phosphorus_10m
0.7
total_phosphorus_5m
0.8
water_depth
91
wave_observation
2
weather_observation
1
wind_direction
34
wind_speed
4.4