marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702284
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_378
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.346
alkalinity_10m
1.347
alkalinity_5m
1.344
ammonium_NH4_0-1m
0.13
ammonium_NH4_10m
0.11
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
3
collection date
2019-12-10
conductivity_CTD_0-1m
573
conductivity_CTD_10m
574
conductivity_CTD_5m
573
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.25
dissolved_oxygen_O2_CTD_10m
8.18
dissolved_oxygen_O2_CTD_5m
8.24
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
61.18417
geographic location (longitude)
18.23383
humic_substance_0-1m
9.5
humic_substance_10m
NA
humic_substance_5m
9.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
1.96
nitrate_NO3_10m
1.99
nitrate_NO3_5m
1.98
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.31
phosphate_PO4_10m
0.31
phosphate_PO4_5m
0.3
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.317
salinity_CTD_10m
5.318
salinity_CTD_5m
5.318
salinity_average
5.32
sample name
P20107_378
sample_DNA_concentration
1.27
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
25.28
silicate_SiO3_10m
25.28
silicate_SiO3_5m
25.46
station_ID
264064
station_name
SR3/C24
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.014
temperature_water_CTD_10m
4.021
temperature_water_CTD_5m
4.016
total_nitrogen_0-1m
18.28
total_nitrogen_10m
18.78
total_nitrogen_5m
18.78
total_phosphorus_0-1m
0.57
total_phosphorus_10m
0.55
total_phosphorus_5m
0.55
water_depth
72
wave_observation
2
weather_observation
1
wind_direction
19
wind_speed
10