marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702273
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20107_367
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.17
ammonium_NH4_10m
0.48
ammonium_NH4_5m
0.18
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-08-20
conductivity_CTD_0-1m
579
conductivity_CTD_10m
610
conductivity_CTD_5m
579
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.46
dissolved_oxygen_O2_CTD_10m
6.34
dissolved_oxygen_O2_CTD_5m
6.47
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.49967
geographic location (longitude)
19.819
humic_substance_0-1m
11.6
humic_substance_10m
NA
humic_substance_5m
11.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.14
nitrate_NO3_10m
0.24
nitrate_NO3_5m
0.16
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.07
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.07
origin
UMU
pH_0-1m
8
pH_10m
8
pH_5m
8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.06
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
5
salinity_CTD_0-1m
3.874
salinity_CTD_10m
4.151
salinity_CTD_5m
3.874
salinity_average
3.97
sample name
P20107_367
sample_DNA_concentration
46.5
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
22.15
silicate_SiO3_10m
25.01
silicate_SiO3_5m
22.4
station_ID
264450
station_name
B3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
15.876
temperature_water_CTD_10m
15.346
temperature_water_CTD_5m
15.871
total_nitrogen_0-1m
16.49
total_nitrogen_10m
16.39
total_nitrogen_5m
16.92
total_phosphorus_0-1m
0.43
total_phosphorus_10m
0.39
total_phosphorus_5m
0.42
water_depth
23
wave_observation
3
weather_observation
1
wind_direction
2
wind_speed
9