marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110702078
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
8
Submitter Id
P20107_160
air_pressure
1001
air_temperature
4.5
alkalinity_0-1m
1.742
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.4
chlorophyll_a_10m
1.3
chlorophyll_a_5m
1.3
cloud_observation
8
collection date
2019-01-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.3
dissolved_oxygen_O2_CTD_10m
8.3
dissolved_oxygen_O2_CTD_5m
8.3
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.24987
geographic location (longitude)
15.98417
humic_substance_0-1m
7.4
humic_substance_10m
7.6
humic_substance_5m
7.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
2.06
nitrate_NO3_10m
2.05
nitrate_NO3_5m
2.08
nitrite+nitrate_NO2+NO3_0-1m
2.08
nitrite+nitrate_NO2+NO3_10m
2.07
nitrite+nitrate_NO2+NO3_5m
2.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.08
pH_10m
8.07
pH_5m
8.07
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.56
phosphate_PO4_10m
0.54
phosphate_PO4_5m
0.56
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.85
salinity_CTD_10m
7.89
salinity_CTD_5m
7.88
salinity_average
7.87
sample name
P20107_160
sample_DNA_concentration
11.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
12.7
silicate_SiO3_10m
12.4
silicate_SiO3_5m
12.8
station_ID
263728
station_name
BY5
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.51
temperature_water_CTD_10m
5.63
temperature_water_CTD_5m
5.58
total_nitrogen_0-1m
17.8
total_nitrogen_10m
17.8
total_nitrogen_5m
17.2
total_phosphorus_0-1m
0.98
total_phosphorus_10m
0.95
total_phosphorus_5m
0.95
water_depth
91
wave_observation
4
weather_observation
2
wind_direction
28
wind_speed
11