marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702258
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
4
Submitter Id
P20107_352
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.13
ammonium_NH4_10m
0.14
ammonium_NH4_5m
0.22
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-08-06
conductivity_CTD_0-1m
553
conductivity_CTD_10m
594
conductivity_CTD_5m
558
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.71
dissolved_oxygen_O2_CTD_10m
5.87
dissolved_oxygen_O2_CTD_5m
6.33
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.52467
geographic location (longitude)
19.808
humic_substance_0-1m
13
humic_substance_10m
NA
humic_substance_5m
13
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.04
nitrate_NO3_10m
0.22
nitrate_NO3_5m
0.04
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.06
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.06
origin
UMU
pH_0-1m
8
pH_10m
7.5
pH_5m
8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.15
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.651
salinity_CTD_10m
4.473
salinity_CTD_5m
3.732
salinity_average
3.95
sample name
P20107_352
sample_DNA_concentration
2.19
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
20.47
silicate_SiO3_10m
32.72
silicate_SiO3_5m
21.79
station_ID
263629
station_name
B7
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
16.302
temperature_water_CTD_10m
11.35
temperature_water_CTD_5m
15.801
total_nitrogen_0-1m
16.85
total_nitrogen_10m
18.06
total_nitrogen_5m
16.99
total_phosphorus_0-1m
0.37
total_phosphorus_10m
0.45
total_phosphorus_5m
0.38
water_depth
23
wave_observation
2
weather_observation
2
wind_direction
3
wind_speed
4