marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702150
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_238
air_pressure
1002
air_temperature
4.1
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.4
chlorophyll_a_10m
0.5
chlorophyll_a_5m
0.5
cloud_observation
9
collection date
2019-01-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
8.2
dissolved_oxygen_O2_CTD_5m
8.2
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.55527
geographic location (longitude)
18.39997
humic_substance_0-1m
8
humic_substance_10m
8.1
humic_substance_5m
8.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
2.17
nitrate_NO3_10m
2.26
nitrate_NO3_5m
2.28
nitrite+nitrate_NO2+NO3_0-1m
2.3
nitrite+nitrate_NO2+NO3_10m
2.39
nitrite+nitrate_NO2+NO3_5m
2.4
nitrite_NO2_0-1m
0.13
nitrite_NO2_10m
0.13
nitrite_NO2_5m
0.12
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.53
phosphate_PO4_10m
0.53
phosphate_PO4_5m
0.53
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.53
salinity_CTD_10m
7.53
salinity_CTD_5m
7.53
salinity_average
7.53
sample name
P20107_238
sample_DNA_concentration
8.87
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
12.2
silicate_SiO3_10m
12.2
silicate_SiO3_5m
12.2
station_ID
263953
station_name
BCS_III-10
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.43
temperature_water_CTD_10m
5.41
temperature_water_CTD_5m
5.41
total_nitrogen_0-1m
19.7
total_nitrogen_10m
18.5
total_nitrogen_5m
18.4
total_phosphorus_0-1m
1.11
total_phosphorus_10m
0.99
total_phosphorus_5m
1.02
water_depth
90
wave_observation
9
weather_observation
9
wind_direction
33
wind_speed
10