marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702059
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20107_141
air_pressure
1007
air_temperature
14.9
alkalinity_0-1m
1.996
alkalinity_10m
2.005
alkalinity_5m
2.014
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.9
chlorophyll_a_10m
NA
chlorophyll_a_5m
1
cloud_observation
6
collection date
2019-06-13
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.6
dissolved_oxygen_O2_CTD_10m
6.5
dissolved_oxygen_O2_CTD_5m
6.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66868
geographic location (longitude)
12.11128
humic_substance_0-1m
4.7
humic_substance_10m
4.5
humic_substance_5m
4.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bornholm Basin and Han� Bay
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.19
pH_10m
8.19
pH_5m
8.18
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.06
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
19.03
salinity_CTD_10m
19.47
salinity_CTD_5m
19.07
salinity_average
19.19
sample name
P20107_141
sample_DNA_concentration
16.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
1
silicate_SiO3_10m
1.8
silicate_SiO3_5m
1.1
station_ID
264876
station_name
Anholt_E
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
14.91
temperature_water_CTD_10m
15.08
temperature_water_CTD_5m
14.92
total_nitrogen_0-1m
16.6
total_nitrogen_10m
14.8
total_nitrogen_5m
15.3
total_phosphorus_0-1m
0.52
total_phosphorus_10m
0.42
total_phosphorus_5m
0.44
water_depth
63
wave_observation
3
weather_observation
1
wind_direction
24
wind_speed
9