marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:35Z
ENA-LAST-UPDATE
2023-10-06T16:50:35Z
External Id
SAMEA110701893
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:35Z
INSDC last update
2023-10-06T16:50:35Z
INSDC status
public
Secchi_depth
6.5
Submitter Id
P20310_333
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.279
alkalinity_10m
1.296
alkalinity_5m
1.284
ammonium_NH4_0-1m
0.12
ammonium_NH4_10m
0.17
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-06-11
conductivity_CTD_0-1m
597
conductivity_CTD_10m
576
conductivity_CTD_5m
586
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.73
dissolved_oxygen_O2_CTD_10m
8.71
dissolved_oxygen_O2_CTD_5m
8.71
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.864
geographic location (longitude)
18.26233
humic_substance_0-1m
10.6
humic_substance_10m
NA
humic_substance_5m
10.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.04
nitrate_NO3_10m
0.04
nitrate_NO3_5m
0.04
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.02
origin
UMU
pH_0-1m
8.2
pH_10m
8.2
pH_5m
8.2
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.99
salinity_CTD_10m
5.053
salinity_CTD_5m
5.014
salinity_average
5.02
sample name
P20310_333
sample_DNA_concentration
16.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
22.54
silicate_SiO3_10m
22.93
silicate_SiO3_5m
22.61
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
7.594
temperature_water_CTD_10m
5.887
temperature_water_CTD_5m
6.785
total_nitrogen_0-1m
17.49
total_nitrogen_10m
14.85
total_nitrogen_5m
14.99
total_phosphorus_0-1m
0.44
total_phosphorus_10m
0.3
total_phosphorus_5m
0.29
water_depth
81
wave_observation
1
weather_observation
1
wind_direction
6
wind_speed
5