marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701727
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
11
Submitter Id
P20310_155
air_pressure
NA
air_temperature
15.9
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.6
chlorophyll_a_10m
1
chlorophyll_a_5m
0.6
cloud_observation
1
collection date
2019-07-16
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
5.9
dissolved_oxygen_O2_CTD_10m
5.9
dissolved_oxygen_O2_CTD_5m
5.9
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bornholm Basin and Han� Bay
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.04
phosphate_PO4_5m
0.06
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
25.39
salinity_CTD_10m
28.15
salinity_CTD_5m
25.47
salinity_average
26.34
sample name
P20310_155
sample_DNA_concentration
13.5
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.2
silicate_SiO3_10m
0.5
silicate_SiO3_5m
0.2
station_ID
263628
station_name
Slaggo
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
17.61
temperature_water_CTD_10m
17.55
temperature_water_CTD_5m
17.66
total_nitrogen_0-1m
13.8
total_nitrogen_10m
12.1
total_nitrogen_5m
12.4
total_phosphorus_0-1m
0.43
total_phosphorus_10m
0.33
total_phosphorus_5m
0.33
water_depth
72
wave_observation
2
weather_observation
1
wind_direction
1
wind_speed
6