marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701748
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_176
air_pressure
989
air_temperature
5.3
alkalinity_0-1m
2.253
alkalinity_10m
2.277
alkalinity_5m
2.253
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.6
chlorophyll_a_10m
0.6
chlorophyll_a_5m
0.7
cloud_observation
9
collection date
2019-12-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28422
geographic location (longitude)
10.50448
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
3.16
nitrate_NO3_10m
2.97
nitrate_NO3_5m
3.15
nitrite+nitrate_NO2+NO3_0-1m
3.22
nitrite+nitrate_NO2+NO3_10m
3.05
nitrite+nitrate_NO2+NO3_5m
3.22
nitrite_NO2_0-1m
0.06
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.07
origin
SMHI
pH_0-1m
8.15
pH_10m
8.13
pH_5m
8.15
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.37
phosphate_PO4_10m
0.37
phosphate_PO4_5m
0.36
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
32.01
salinity_CTD_10m
32.97
salinity_CTD_5m
32.01
salinity_average
32.33
sample name
P20310_176
sample_DNA_concentration
6.54
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.1
silicate_SiO3_10m
1.8
silicate_SiO3_5m
2
station_ID
264194
station_name
A17
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
7.97
temperature_water_CTD_10m
9.05
temperature_water_CTD_5m
7.98
total_nitrogen_0-1m
NA
total_nitrogen_10m
NA
total_nitrogen_5m
NA
total_phosphorus_0-1m
NA
total_phosphorus_10m
NA
total_phosphorus_5m
NA
water_depth
346
wave_observation
9
weather_observation
9
wind_direction
23
wind_speed
7