fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
50141850
experiment
chicken1
Sample_description
TR4-15
Reactor
TR4
Treatment
VAN
Day_of_Connection
15
Day_of_Treatment
-1
Day_from_Inoculum
38
Phase
Stab
Treatment2
AB
Date
NA
Reactor_Treatment
TR4_VAN
Reactor_F1_F2
VAN_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
66800000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.621
Lactat_mM
0
Formiat_mM
0
Acetat_mM
101.441
Propionat_mM
14.85
Isobutyrat_mM
7.813
Butyrat_mM
33.872
Isovalerat_mM
6.542
Valerat_mM
8.752
Total_SCFA_mM
173.891
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated