marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701861
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_301
air_pressure
1030
air_temperature
9.6
alkalinity_0-1m
2.016
alkalinity_10m
2.014
alkalinity_5m
2.012
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.8
chlorophyll_a_10m
1
chlorophyll_a_5m
0.8
cloud_observation
2
collection date
2019-05-13
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.2
dissolved_oxygen_O2_CTD_10m
7.3
dissolved_oxygen_O2_CTD_5m
7.2
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.93998
geographic location (longitude)
12.21227
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.15
pH_10m
8.15
pH_5m
8.15
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.07
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
20.13
salinity_CTD_10m
20.22
salinity_CTD_5m
20.14
salinity_average
20.16
sample name
P20310_301
sample_DNA_concentration
12.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.5
silicate_SiO3_10m
3.6
silicate_SiO3_5m
3.6
station_ID
263903
station_name
N14_Falkenberg
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.32
temperature_water_CTD_10m
10.24
temperature_water_CTD_5m
10.31
total_nitrogen_0-1m
14.4
total_nitrogen_10m
13.2
total_nitrogen_5m
14.1
total_phosphorus_0-1m
0.47
total_phosphorus_10m
0.43
total_phosphorus_5m
0.51
water_depth
30
wave_observation
3
weather_observation
1
wind_direction
32
wind_speed
11