marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701691
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_119
air_pressure
1002
air_temperature
19.2
alkalinity_0-1m
1.721
alkalinity_10m
1.727
alkalinity_5m
1.718
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2
chlorophyll_a_10m
2
chlorophyll_a_5m
2
cloud_observation
8
collection date
2019-08-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.5
dissolved_oxygen_O2_CTD_10m
6.3
dissolved_oxygen_O2_CTD_5m
6.4
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25002
geographic location (longitude)
15.98418
humic_substance_0-1m
6
humic_substance_10m
6.1
humic_substance_5m
6.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.31
pH_10m
8.29
pH_5m
8.32
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.08
phosphate_PO4_10m
0.06
phosphate_PO4_5m
0.07
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.71
salinity_CTD_10m
7.71
salinity_CTD_5m
7.71
salinity_average
7.71
sample name
P20310_119
sample_DNA_concentration
15.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
8.5
silicate_SiO3_10m
8.5
silicate_SiO3_5m
8.4
station_ID
263728
station_name
BY5
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
19.5
temperature_water_CTD_10m
19.39
temperature_water_CTD_5m
19.5
total_nitrogen_0-1m
22.4
total_nitrogen_10m
22.5
total_nitrogen_5m
20.9
total_phosphorus_0-1m
0.59
total_phosphorus_10m
0.57
total_phosphorus_5m
0.57
water_depth
91
wave_observation
2
weather_observation
5
wind_direction
17
wind_speed
6