marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701781
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_215
air_pressure
999
air_temperature
4
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.4
cloud_observation
8
collection date
2019-12-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.88198
geographic location (longitude)
20.32732
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
3.72
nitrate_NO3_10m
3.74
nitrate_NO3_5m
3.75
nitrite+nitrate_NO2+NO3_0-1m
3.82
nitrite+nitrate_NO2+NO3_10m
3.83
nitrite+nitrate_NO2+NO3_5m
3.85
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.1
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.47
phosphate_PO4_10m
0.47
phosphate_PO4_5m
0.48
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7
salinity_CTD_10m
7
salinity_CTD_5m
7
salinity_average
7.00
sample name
P20310_215
sample_DNA_concentration
0.27
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14
silicate_SiO3_10m
14
silicate_SiO3_5m
14
station_ID
263745
station_name
BY29
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
7.39
temperature_water_CTD_10m
7.39
temperature_water_CTD_5m
7.39
total_nitrogen_0-1m
29.9
total_nitrogen_10m
27.8
total_nitrogen_5m
23.5
total_phosphorus_0-1m
0.96
total_phosphorus_10m
0.8
total_phosphorus_5m
0.85
water_depth
178
wave_observation
5
weather_observation
2
wind_direction
16
wind_speed
13