marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701773
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
8
Submitter Id
P20310_207
air_pressure
1015
air_temperature
3.9
alkalinity_0-1m
1.845
alkalinity_10m
2.077
alkalinity_5m
1.88
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.8
chlorophyll_a_10m
1.1
chlorophyll_a_5m
1
cloud_observation
1
collection date
2019-04-09
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
7.6
dissolved_oxygen_O2_CTD_5m
7.9
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.6708
geographic location (longitude)
12.1086
humic_substance_0-1m
5.7
humic_substance_10m
4.8
humic_substance_5m
5.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.15
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.18
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.17
pH_10m
8.14
pH_5m
8.16
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.2
phosphate_PO4_10m
0.08
phosphate_PO4_5m
0.19
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
12.83
salinity_CTD_10m
22.84
salinity_CTD_5m
13.66
salinity_average
16.44
sample name
P20310_207
sample_DNA_concentration
3.45
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
6.8
silicate_SiO3_10m
4.7
silicate_SiO3_5m
6.5
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
6.56
temperature_water_CTD_10m
6.41
temperature_water_CTD_5m
6.51
total_nitrogen_0-1m
18.7
total_nitrogen_10m
14.4
total_nitrogen_5m
17.4
total_phosphorus_0-1m
0.6
total_phosphorus_10m
0.45
total_phosphorus_5m
0.57
water_depth
61
wave_observation
3
weather_observation
1
wind_direction
34
wind_speed
5