marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:35Z
ENA-LAST-UPDATE
2023-10-06T16:50:35Z
External Id
SAMEA110701762
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:35Z
INSDC last update
2023-10-06T16:50:35Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_190
air_pressure
986
air_temperature
6.5
alkalinity_0-1m
2.081
alkalinity_10m
2.063
alkalinity_5m
2.069
ammonium_NH4_0-1m
0.45
ammonium_NH4_10m
0.55
ammonium_NH4_5m
0.47
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.7
chlorophyll_a_10m
2.2
chlorophyll_a_5m
2.7
cloud_observation
9
collection date
2019-12-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.6688
geographic location (longitude)
12.11127
humic_substance_0-1m
5.8
humic_substance_10m
6
humic_substance_5m
5.8
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
2.36
nitrate_NO3_10m
2.56
nitrate_NO3_5m
2.42
nitrite+nitrate_NO2+NO3_0-1m
2.48
nitrite+nitrate_NO2+NO3_10m
2.7
nitrite+nitrate_NO2+NO3_5m
2.55
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.14
nitrite_NO2_5m
0.13
origin
SMHI
pH_0-1m
8.13
pH_10m
8.12
pH_5m
8.13
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.4
phosphate_PO4_10m
0.43
phosphate_PO4_5m
0.43
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
23.25
salinity_CTD_10m
23.29
salinity_CTD_5m
23.2
salinity_average
23.25
sample name
P20310_190
sample_DNA_concentration
2.21
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
4.2
silicate_SiO3_10m
4.4
silicate_SiO3_5m
4.3
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
6.83
temperature_water_CTD_10m
6.84
temperature_water_CTD_5m
6.83
total_nitrogen_0-1m
16.5
total_nitrogen_10m
15.9
total_nitrogen_5m
15.3
total_phosphorus_0-1m
0.75
total_phosphorus_10m
0.77
total_phosphorus_5m
0.75
water_depth
63
wave_observation
9
weather_observation
9
wind_direction
20
wind_speed
13