marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:35Z
ENA-LAST-UPDATE
2023-10-06T16:50:35Z
External Id
SAMEA110701799
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:35Z
INSDC last update
2023-10-06T16:50:35Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_233
air_pressure
1004
air_temperature
13.3
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.1
chlorophyll_a_5m
1.1
cloud_observation
9
collection date
2019-06-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.5
dissolved_oxygen_O2_CTD_10m
7.5
dissolved_oxygen_O2_CTD_5m
7.5
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
54.97115
geographic location (longitude)
14.09882
humic_substance_0-1m
6.1
humic_substance_10m
6.2
humic_substance_5m
6.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.21
phosphate_PO4_10m
0.2
phosphate_PO4_5m
0.2
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.78
salinity_CTD_10m
7.78
salinity_CTD_5m
7.78
salinity_average
7.78
sample name
P20310_233
sample_DNA_concentration
3.35
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.1
silicate_SiO3_10m
9.1
silicate_SiO3_5m
9.1
station_ID
263725
station_name
BY2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
13.57
temperature_water_CTD_10m
13.54
temperature_water_CTD_5m
13.57
total_nitrogen_0-1m
22.3
total_nitrogen_10m
20
total_nitrogen_5m
21.4
total_phosphorus_0-1m
0.85
total_phosphorus_10m
0.69
total_phosphorus_5m
0.74
water_depth
47
wave_observation
4
weather_observation
4
wind_direction
6
wind_speed
10