marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702160
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
8
Submitter Id
P20107_248
air_pressure
1006
air_temperature
6.8
alkalinity_0-1m
1.604
alkalinity_10m
1.604
alkalinity_5m
1.609
ammonium_NH4_0-1m
0.49
ammonium_NH4_10m
0.48
ammonium_NH4_5m
0.47
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.5
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.3
cloud_observation
2
collection date
2019-12-05
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.1224
geographic location (longitude)
17.67
humic_substance_0-1m
8.6
humic_substance_10m
8.9
humic_substance_5m
8.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.71
nitrate_NO3_10m
0.69
nitrate_NO3_5m
0.7
nitrite+nitrate_NO2+NO3_0-1m
1.15
nitrite+nitrate_NO2+NO3_10m
1.14
nitrite+nitrate_NO2+NO3_5m
1.14
nitrite_NO2_0-1m
0.44
nitrite_NO2_10m
0.45
nitrite_NO2_5m
0.44
origin
SMHI
pH_0-1m
8.05
pH_10m
8.04
pH_5m
8.04
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.42
phosphate_PO4_10m
0.42
phosphate_PO4_5m
0.42
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.69
salinity_CTD_10m
6.69
salinity_CTD_5m
6.69
salinity_average
6.69
sample name
P20107_248
sample_DNA_concentration
2.85
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.8
silicate_SiO3_10m
14.9
silicate_SiO3_5m
14.9
station_ID
263979
station_name
BY38
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
7.13
temperature_water_CTD_10m
7.12
temperature_water_CTD_5m
7.12
total_nitrogen_0-1m
19.7
total_nitrogen_10m
21.6
total_nitrogen_5m
NA
total_phosphorus_0-1m
0.73
total_phosphorus_10m
0.7
total_phosphorus_5m
0.82
water_depth
111
wave_observation
3
weather_observation
1
wind_direction
19
wind_speed
15