marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701677
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_105
air_pressure
1007
air_temperature
12
alkalinity_0-1m
2.071
alkalinity_10m
2.103
alkalinity_5m
2.098
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.4
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.3
cloud_observation
9
collection date
2019-10-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.4
dissolved_oxygen_O2_CTD_10m
6.3
dissolved_oxygen_O2_CTD_5m
6.3
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.6687
geographic location (longitude)
12.1112
humic_substance_0-1m
4.5
humic_substance_10m
3.9
humic_substance_5m
4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.15
pH_10m
8.15
pH_5m
8.16
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.16
phosphate_PO4_5m
0.13
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
23.55
salinity_CTD_10m
23.62
salinity_CTD_5m
23.52
salinity_average
23.56
sample name
P20310_105
sample_DNA_concentration
6.21
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.7
silicate_SiO3_10m
1.1
silicate_SiO3_5m
0.6
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
12.69
temperature_water_CTD_10m
12.73
temperature_water_CTD_5m
12.69
total_nitrogen_0-1m
18.1
total_nitrogen_10m
12.9
total_nitrogen_5m
15
total_phosphorus_0-1m
0.55
total_phosphorus_10m
0.62
total_phosphorus_5m
0.63
water_depth
63
wave_observation
9
weather_observation
9
wind_direction
17
wind_speed
3