marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701910
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_350
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.25
ammonium_NH4_10m
0.92
ammonium_NH4_5m
0.23
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.79
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-08-05
conductivity_CTD_0-1m
304
conductivity_CTD_10m
313
conductivity_CTD_5m
305
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.27
dissolved_oxygen_O2_CTD_10m
7.04
dissolved_oxygen_O2_CTD_5m
6.47
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.72983
geographic location (longitude)
22.44717
humic_substance_0-1m
22.3
humic_substance_10m
NA
humic_substance_5m
22.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.84
nitrate_NO3_10m
5.38
nitrate_NO3_5m
0.85
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.26
nitrite_NO2_5m
0.1
origin
UMU
pH_0-1m
7.7
pH_10m
7.4
pH_5m
7.7
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.02
phosphate_PO4_10m
0.03
phosphate_PO4_5m
0.03
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2
salinity_CTD_10m
2.436
salinity_CTD_5m
2
salinity_average
2.15
sample name
P20310_350
sample_DNA_concentration
10.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
54.48
silicate_SiO3_10m
51.63
silicate_SiO3_5m
54.83
station_ID
263856
station_name
RA2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
15.767
temperature_water_CTD_10m
8.708
temperature_water_CTD_5m
15.466
total_nitrogen_0-1m
17.42
total_nitrogen_10m
21.7
total_nitrogen_5m
17.13
total_phosphorus_0-1m
0.22
total_phosphorus_10m
0.23
total_phosphorus_5m
0.22
water_depth
13
wave_observation
2
weather_observation
1
wind_direction
35
wind_speed
4