marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701825
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20310_259
air_pressure
NA
air_temperature
15
alkalinity_0-1m
1.54
alkalinity_10m
1.54
alkalinity_5m
1.53
ammonium_NH4_0-1m
0.1
ammonium_NH4_10m
0.07
ammonium_NH4_5m
0.12
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.8
chlorophyll_a_10m
4.57
chlorophyll_a_5m
5.29
cloud_observation
8
collection date
2019-07-31
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.13
dissolved_oxygen_O2_CTD_10m
6.03
dissolved_oxygen_O2_CTD_5m
6.04
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.58333
geographic location (longitude)
18.23333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.02
nitrite+nitrate_NO2+NO3_10m
0.02
nitrite+nitrate_NO2+NO3_5m
0.02
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.02
phosphate_PO4_10m
0.02
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.318
salinity_CTD_10m
6.333
salinity_CTD_5m
6.334
salinity_average
6.33
sample name
P20310_259
sample_DNA_concentration
15.2
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.34
silicate_SiO3_10m
15.14
silicate_SiO3_5m
15.62
station_ID
263732
station_name
BY31
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
18.12
temperature_water_CTD_10m
18.14
temperature_water_CTD_5m
18.14
total_nitrogen_0-1m
26.47
total_nitrogen_10m
27.54
total_nitrogen_5m
26.61
total_phosphorus_0-1m
0.58
total_phosphorus_10m
0.57
total_phosphorus_5m
0.58
water_depth
460
wave_observation
1
weather_observation
2
wind_direction
5
wind_speed
15