marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702170
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
8.5
Submitter Id
P20107_258
air_pressure
NA
air_temperature
2
alkalinity_0-1m
1.59
alkalinity_10m
1.59
alkalinity_5m
1.59
ammonium_NH4_0-1m
0.08
ammonium_NH4_10m
0.08
ammonium_NH4_5m
0.08
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.27
chlorophyll_a_10m
1.89
chlorophyll_a_5m
2.08
cloud_observation
6
collection date
2019-03-19
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.52
dissolved_oxygen_O2_CTD_10m
9.54
dissolved_oxygen_O2_CTD_5m
9.53
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.80333
geographic location (longitude)
17.62367
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
3.18
nitrite+nitrate_NO2+NO3_10m
3.15
nitrite+nitrate_NO2+NO3_5m
3.19
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.65
phosphate_PO4_10m
0.64
phosphate_PO4_5m
0.65
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.699
salinity_CTD_10m
6.703
salinity_CTD_5m
6.702
salinity_average
6.70
sample name
P20107_258
sample_DNA_concentration
10.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
20.08
silicate_SiO3_10m
19.86
silicate_SiO3_5m
20.07
station_ID
263738
station_name
B1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
1.66
temperature_water_CTD_10m
1.66
temperature_water_CTD_5m
1.66
total_nitrogen_0-1m
21.15
total_nitrogen_10m
20.9
total_nitrogen_5m
21.06
total_phosphorus_0-1m
0.94
total_phosphorus_10m
0.92
total_phosphorus_5m
0.93
water_depth
42
wave_observation
1
weather_observation
1
wind_direction
36
wind_speed
10