marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702262
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20107_356
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.12
ammonium_NH4_10m
0.15
ammonium_NH4_5m
0.14
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-09-04
conductivity_CTD_0-1m
600
conductivity_CTD_10m
610
conductivity_CTD_5m
600
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.44
dissolved_oxygen_O2_CTD_10m
6.13
dissolved_oxygen_O2_CTD_5m
6.43
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.525
geographic location (longitude)
19.80817
humic_substance_0-1m
12.8
humic_substance_10m
NA
humic_substance_5m
12.8
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Sea
nitrate_NO3_0-1m
0.05
nitrate_NO3_10m
0.06
nitrate_NO3_5m
0.05
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
8
pH_10m
8
pH_5m
8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.06
phosphate_PO4_5m
0.06
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.057
salinity_CTD_10m
4.138
salinity_CTD_5m
4.059
salinity_average
4.08
sample name
P20107_356
sample_DNA_concentration
15.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
24.14
silicate_SiO3_10m
23.94
silicate_SiO3_5m
23.86
station_ID
263629
station_name
B7
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
15.546
temperature_water_CTD_10m
15.452
temperature_water_CTD_5m
15.547
total_nitrogen_0-1m
16.49
total_nitrogen_10m
16.21
total_nitrogen_5m
16.42
total_phosphorus_0-1m
0.26
total_phosphorus_10m
0.21
total_phosphorus_5m
0.22
water_depth
23
wave_observation
2
weather_observation
2
wind_direction
33
wind_speed
8