marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701715
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_143
air_pressure
1017
air_temperature
3.3
alkalinity_0-1m
1.734
alkalinity_10m
1.736
alkalinity_5m
1.726
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.6
chlorophyll_a_10m
1
chlorophyll_a_5m
0.8
cloud_observation
7
collection date
2019-02-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.8
dissolved_oxygen_O2_CTD_10m
8.8
dissolved_oxygen_O2_CTD_5m
8.8
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.31222
geographic location (longitude)
20.07562
humic_substance_0-1m
8
humic_substance_10m
8.4
humic_substance_5m
8.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
2.83
nitrate_NO3_10m
2.85
nitrate_NO3_5m
2.83
nitrite+nitrate_NO2+NO3_0-1m
2.86
nitrite+nitrate_NO2+NO3_10m
2.88
nitrite+nitrate_NO2+NO3_5m
2.86
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.08
pH_10m
8.07
pH_5m
8.05
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.64
phosphate_PO4_10m
0.61
phosphate_PO4_5m
0.63
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.51
salinity_CTD_10m
7.51
salinity_CTD_5m
7.51
salinity_average
7.51
sample name
P20310_143
sample_DNA_concentration
13.9
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.2
silicate_SiO3_10m
14.1
silicate_SiO3_5m
14.1
station_ID
263730
station_name
BY15
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.82
temperature_water_CTD_10m
3.81
temperature_water_CTD_5m
3.81
total_nitrogen_0-1m
21.8
total_nitrogen_10m
21.2
total_nitrogen_5m
22.2
total_phosphorus_0-1m
0.94
total_phosphorus_10m
0.87
total_phosphorus_5m
0.88
water_depth
239
wave_observation
2
weather_observation
1
wind_direction
34
wind_speed
1