marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701812
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20310_246
air_pressure
1034
air_temperature
6
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.3
chlorophyll_a_10m
3.5
chlorophyll_a_5m
1.8
cloud_observation
7
collection date
2019-05-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.4
dissolved_oxygen_O2_CTD_10m
7.3
dissolved_oxygen_O2_CTD_5m
7.4
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.26067
geographic location (longitude)
11.43567
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.11
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.11
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.06
phosphate_PO4_10m
0.06
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
26.86
salinity_CTD_10m
28.63
salinity_CTD_5m
27.42
salinity_average
27.64
sample name
P20310_246
sample_DNA_concentration
14.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.7
silicate_SiO3_10m
0.9
silicate_SiO3_5m
0.1
station_ID
263628
station_name
Slaggo
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.12
temperature_water_CTD_10m
8.49
temperature_water_CTD_5m
9.53
total_nitrogen_0-1m
16.5
total_nitrogen_10m
12.1
total_nitrogen_5m
21.1
total_phosphorus_0-1m
0.61
total_phosphorus_10m
0.43
total_phosphorus_5m
1.09
water_depth
64
wave_observation
2
weather_observation
2
wind_direction
22
wind_speed
5