marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701764
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20310_192
air_pressure
1010
air_temperature
17.2
alkalinity_0-1m
2.026
alkalinity_10m
2.127
alkalinity_5m
2.025
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.8
chlorophyll_a_5m
0.6
cloud_observation
4
collection date
2019-07-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6
dissolved_oxygen_O2_CTD_10m
6.2
dissolved_oxygen_O2_CTD_5m
6.1
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66862
geographic location (longitude)
12.11143
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.2
pH_10m
8.15
pH_5m
8.18
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.06
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.06
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
19.56
salinity_CTD_10m
25.21
salinity_CTD_5m
19.69
salinity_average
21.49
sample name
P20310_192
sample_DNA_concentration
21.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.1
silicate_SiO3_10m
0.3
silicate_SiO3_5m
0.1
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
18.36
temperature_water_CTD_10m
15.46
temperature_water_CTD_5m
18.38
total_nitrogen_0-1m
15.7
total_nitrogen_10m
13.4
total_nitrogen_5m
15.2
total_phosphorus_0-1m
0.55
total_phosphorus_10m
0.43
total_phosphorus_5m
0.48
water_depth
64
wave_observation
2
weather_observation
1
wind_direction
31
wind_speed
6