marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701797
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
2.5
Submitter Id
P20310_231
air_pressure
1022
air_temperature
4
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.99
ammonium_NH4_10m
0.5
ammonium_NH4_5m
0.64
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.1
chlorophyll_a_5m
0.8
cloud_observation
1
collection date
2019-03-19
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
7.2
dissolved_oxygen_O2_CTD_5m
7.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.26
geographic location (longitude)
11.43483
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
17.29
nitrate_NO3_10m
4.76
nitrate_NO3_5m
4.78
nitrite+nitrate_NO2+NO3_0-1m
17.55
nitrite+nitrate_NO2+NO3_10m
4.97
nitrite+nitrate_NO2+NO3_5m
4.94
nitrite_NO2_0-1m
0.26
nitrite_NO2_10m
0.21
nitrite_NO2_5m
0.16
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.34
phosphate_PO4_10m
0.38
phosphate_PO4_5m
0.31
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
19.95
salinity_CTD_10m
31.26
salinity_CTD_5m
27.55
salinity_average
26.25
sample name
P20310_231
sample_DNA_concentration
3.91
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
33
silicate_SiO3_10m
4.9
silicate_SiO3_5m
6.3
station_ID
263628
station_name
Slaggo
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.87
temperature_water_CTD_10m
4.99
temperature_water_CTD_5m
4.3
total_nitrogen_0-1m
35.1
total_nitrogen_10m
15.1
total_nitrogen_5m
15.9
total_phosphorus_0-1m
0.72
total_phosphorus_10m
0.59
total_phosphorus_5m
0.52
water_depth
72
wave_observation
2
weather_observation
1
wind_direction
31
wind_speed
5