marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701922
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_362
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.3
ammonium_NH4_10m
0.29
ammonium_NH4_5m
0.29
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.96
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-09-18
conductivity_CTD_0-1m
278
conductivity_CTD_10m
278
conductivity_CTD_5m
278
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.37
dissolved_oxygen_O2_CTD_10m
6.37
dissolved_oxygen_O2_CTD_5m
6.52
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.7295
geographic location (longitude)
22.44683
humic_substance_0-1m
18.3
humic_substance_10m
NA
humic_substance_5m
18.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
1.3
nitrate_NO3_10m
1.31
nitrate_NO3_5m
1.3
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
7.7
pH_10m
7.7
pH_5m
7.7
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2
salinity_CTD_10m
2
salinity_CTD_5m
2
salinity_average
2.00
sample name
P20310_362
sample_DNA_concentration
16.3
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
48.42
silicate_SiO3_10m
48.42
silicate_SiO3_5m
48.42
station_ID
263856
station_name
RA2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
12.791
temperature_water_CTD_10m
12.787
temperature_water_CTD_5m
12.788
total_nitrogen_0-1m
14.99
total_nitrogen_10m
14.56
total_nitrogen_5m
14.49
total_phosphorus_0-1m
0.26
total_phosphorus_10m
0.22
total_phosphorus_5m
0.2
water_depth
13
wave_observation
1
weather_observation
1
wind_direction
1
wind_speed
2