marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701730
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_158
air_pressure
1013
air_temperature
1
alkalinity_0-1m
1.639
alkalinity_10m
1.632
alkalinity_5m
1.641
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.2
chlorophyll_a_10m
0.2
chlorophyll_a_5m
0.3
cloud_observation
9
collection date
2019-01-10
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.6
dissolved_oxygen_O2_CTD_10m
8.6
dissolved_oxygen_O2_CTD_5m
8.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.59378
geographic location (longitude)
18.23652
humic_substance_0-1m
9
humic_substance_10m
8.9
humic_substance_5m
8.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
2.97
nitrate_NO3_10m
2.89
nitrate_NO3_5m
2.97
nitrite+nitrate_NO2+NO3_0-1m
3.04
nitrite+nitrate_NO2+NO3_10m
2.98
nitrite+nitrate_NO2+NO3_5m
3.04
nitrite_NO2_0-1m
0.07
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.07
origin
SMHI
pH_0-1m
8
pH_10m
8
pH_5m
7.98
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.75
phosphate_PO4_10m
0.71
phosphate_PO4_5m
0.73
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.86
salinity_CTD_10m
6.87
salinity_CTD_5m
6.86
salinity_average
6.86
sample name
P20310_158
sample_DNA_concentration
7.32
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
18.9
silicate_SiO3_10m
18.6
silicate_SiO3_5m
19.1
station_ID
263732
station_name
BY31
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.05
temperature_water_CTD_10m
4.1
temperature_water_CTD_5m
4.08
total_nitrogen_0-1m
21.7
total_nitrogen_10m
20.7
total_nitrogen_5m
20.7
total_phosphorus_0-1m
1.25
total_phosphorus_10m
1.08
total_phosphorus_5m
1.18
water_depth
448
wave_observation
9
weather_observation
9
wind_direction
23
wind_speed
8