marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702112
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
10
Submitter Id
P20107_194
air_pressure
1025
air_temperature
2.4
alkalinity_0-1m
1.603
alkalinity_10m
1.612
alkalinity_5m
1.613
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1
chlorophyll_a_10m
1
chlorophyll_a_5m
1
cloud_observation
4
collection date
2019-02-24
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.4
dissolved_oxygen_O2_CTD_10m
9.3
dissolved_oxygen_O2_CTD_5m
9.3
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.59365
geographic location (longitude)
18.23637
humic_substance_0-1m
8.9
humic_substance_10m
9.1
humic_substance_5m
9.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
3.85
nitrate_NO3_10m
3.74
nitrate_NO3_5m
3.73
nitrite+nitrate_NO2+NO3_0-1m
3.95
nitrite+nitrate_NO2+NO3_10m
3.84
nitrite+nitrate_NO2+NO3_5m
3.84
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.11
origin
SMHI
pH_0-1m
8.06
pH_10m
8.06
pH_5m
8.03
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.75
phosphate_PO4_10m
0.74
phosphate_PO4_5m
0.74
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.73
salinity_CTD_10m
6.73
salinity_CTD_5m
6.73
salinity_average
6.73
sample name
P20107_194
sample_DNA_concentration
6.82
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
20.6
silicate_SiO3_10m
20.4
silicate_SiO3_5m
20.5
station_ID
263732
station_name
BY31
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.01
temperature_water_CTD_10m
2.05
temperature_water_CTD_5m
2.05
total_nitrogen_0-1m
22.4
total_nitrogen_10m
20.7
total_nitrogen_5m
21.5
total_phosphorus_0-1m
1.07
total_phosphorus_10m
1.02
total_phosphorus_5m
1.01
water_depth
444
wave_observation
3
weather_observation
9
wind_direction
25
wind_speed
8