marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701794
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
12
Submitter Id
P20310_228
air_pressure
1016
air_temperature
5
alkalinity_0-1m
1.722
alkalinity_10m
1.726
alkalinity_5m
1.734
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.6
chlorophyll_a_10m
3
chlorophyll_a_5m
3.3
cloud_observation
0
collection date
2019-04-06
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.3
dissolved_oxygen_O2_CTD_10m
9.3
dissolved_oxygen_O2_CTD_5m
9.3
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.31217
geographic location (longitude)
20.07618
humic_substance_0-1m
7
humic_substance_10m
7.2
humic_substance_5m
7.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
1.02
nitrate_NO3_10m
1.01
nitrate_NO3_5m
1.01
nitrite+nitrate_NO2+NO3_0-1m
1.09
nitrite+nitrate_NO2+NO3_10m
1.08
nitrite+nitrate_NO2+NO3_5m
1.08
nitrite_NO2_0-1m
0.07
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.07
origin
SMHI
pH_0-1m
8.19
pH_10m
8.18
pH_5m
8.18
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.53
phosphate_PO4_10m
0.52
phosphate_PO4_5m
0.53
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.46
salinity_CTD_10m
7.46
salinity_CTD_5m
7.46
salinity_average
7.46
sample name
P20310_228
sample_DNA_concentration
3.89
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.1
silicate_SiO3_10m
15.1
silicate_SiO3_5m
15.1
station_ID
263730
station_name
BY15
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.97
temperature_water_CTD_10m
3.95
temperature_water_CTD_5m
3.95
total_nitrogen_0-1m
25.9
total_nitrogen_10m
22.4
total_nitrogen_5m
22
total_phosphorus_0-1m
0.96
total_phosphorus_10m
0.92
total_phosphorus_5m
0.94
water_depth
239
wave_observation
3
weather_observation
0
wind_direction
10
wind_speed
9