marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702063
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_145
air_pressure
1026
air_temperature
1.8
alkalinity_0-1m
1.942
alkalinity_10m
2.016
alkalinity_5m
1.946
ammonium_NH4_0-1m
0.25
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
9.2
chlorophyll_a_10m
7.2
chlorophyll_a_5m
9.4
cloud_observation
9
collection date
2019-02-21
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.8
dissolved_oxygen_O2_CTD_10m
8.4
dissolved_oxygen_O2_CTD_5m
8.8
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.94047
geographic location (longitude)
12.21183
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
3.63
nitrate_NO3_10m
2.68
nitrate_NO3_5m
3.44
nitrite+nitrate_NO2+NO3_0-1m
3.71
nitrite+nitrate_NO2+NO3_10m
2.75
nitrite+nitrate_NO2+NO3_5m
3.52
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8.17
pH_10m
8.17
pH_5m
8.18
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.1
phosphate_PO4_10m
0.13
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
19.36
salinity_CTD_10m
23.3
salinity_CTD_5m
19.36
salinity_average
20.67
sample name
P20107_145
sample_DNA_concentration
5.29
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.9
silicate_SiO3_10m
3.1
silicate_SiO3_5m
3.8
station_ID
263903
station_name
N14_Falkenberg
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
3.19
temperature_water_CTD_10m
3.16
temperature_water_CTD_5m
3.2
total_nitrogen_0-1m
22.2
total_nitrogen_10m
18.8
total_nitrogen_5m
21
total_phosphorus_0-1m
0.79
total_phosphorus_10m
0.76
total_phosphorus_5m
0.77
water_depth
32
wave_observation
9
weather_observation
9
wind_direction
9
wind_speed
9.6