fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
47432602
experiment
chicken1
Sample_description
TR1-19
Reactor
TR1
Treatment
CTX+HV292.1
Day_of_Connection
19
Day_of_Treatment
3
Day_from_Inoculum
42
Phase
Treat
Treatment2
AB+E. coli
Date
NA
Reactor_Treatment
TR1_CTX+HV292.1
Reactor_F1_F2
CXT_HV292_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
33600000000
HV292.1_Copy_Number_permL
794000
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
1507417
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
20
Antibiotic
CTX
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
2.779
Lactat_mM
0
Formiat_mM
0
Acetat_mM
77.988
Propionat_mM
8.582
Isobutyrat_mM
4.4
Butyrat_mM
49.923
Isovalerat_mM
3.876
Valerat_mM
1.147
Total_SCFA_mM
148.695
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated