marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701737
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_165
air_pressure
999
air_temperature
11.2
alkalinity_0-1m
1.695
alkalinity_10m
1.694
alkalinity_5m
1.696
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.8
chlorophyll_a_10m
2.8
chlorophyll_a_5m
2.9
cloud_observation
4
collection date
2019-09-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.6
dissolved_oxygen_O2_CTD_10m
6.6
dissolved_oxygen_O2_CTD_5m
6.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.554
geographic location (longitude)
18.39945
humic_substance_0-1m
6.2
humic_substance_10m
6
humic_substance_5m
6.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.16
pH_10m
8.15
pH_5m
8.16
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.15
phosphate_PO4_10m
0.14
phosphate_PO4_5m
0.14
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.32
salinity_CTD_10m
7.33
salinity_CTD_5m
7.32
salinity_average
7.32
sample name
P20310_165
sample_DNA_concentration
10.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
12.5
silicate_SiO3_10m
12.6
silicate_SiO3_5m
12.5
station_ID
263953
station_name
BCS_III-10
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
15.51
temperature_water_CTD_10m
15.52
temperature_water_CTD_5m
15.52
total_nitrogen_0-1m
20.8
total_nitrogen_10m
20.6
total_nitrogen_5m
20.7
total_phosphorus_0-1m
0.53
total_phosphorus_10m
0.53
total_phosphorus_5m
0.55
water_depth
90
wave_observation
4
weather_observation
1
wind_direction
31
wind_speed
13