marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701888
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_328
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.236
alkalinity_10m
1.268
alkalinity_5m
1.238
ammonium_NH4_0-1m
0.16
ammonium_NH4_10m
0.16
ammonium_NH4_5m
0.16
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.11
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
3
collection date
2019-05-15
conductivity_CTD_0-1m
541
conductivity_CTD_10m
538
conductivity_CTD_5m
541
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.94
dissolved_oxygen_O2_CTD_10m
9.74
dissolved_oxygen_O2_CTD_5m
9.92
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.8635
geographic location (longitude)
18.26467
humic_substance_0-1m
11.4
humic_substance_10m
NA
humic_substance_5m
11.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.06
nitrate_NO3_10m
0.04
nitrate_NO3_5m
0.05
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.06
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
8.5
pH_10m
8.3
pH_5m
8.5
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.839
salinity_CTD_10m
4.916
salinity_CTD_5m
4.845
salinity_average
4.87
sample name
P20310_328
sample_DNA_concentration
4.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
23.14
silicate_SiO3_10m
23.21
silicate_SiO3_5m
23.11
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
5.076
temperature_water_CTD_10m
4.368
temperature_water_CTD_5m
5.017
total_nitrogen_0-1m
17.49
total_nitrogen_10m
16.06
total_nitrogen_5m
17.56
total_phosphorus_0-1m
0.47
total_phosphorus_10m
0.34
total_phosphorus_5m
0.46
water_depth
83
wave_observation
0
weather_observation
1
wind_direction
0
wind_speed
0