marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702054
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4
Submitter Id
P20107_136
air_pressure
1012
air_temperature
5.6
alkalinity_0-1m
1.964
alkalinity_10m
2.016
alkalinity_5m
1.971
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
6.2
chlorophyll_a_10m
2
chlorophyll_a_5m
5.3
cloud_observation
0
collection date
2019-04-08
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
7.8
dissolved_oxygen_O2_CTD_5m
8.1
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.93988
geographic location (longitude)
12.21183
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.04
origin
SMHI
pH_0-1m
8.27
pH_10m
8.17
pH_5m
8.25
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.09
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.1
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
18.71
salinity_CTD_10m
20.86
salinity_CTD_5m
18.6
salinity_average
19.39
sample name
P20107_136
sample_DNA_concentration
15.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
6.8
silicate_SiO3_10m
5.4
silicate_SiO3_5m
6.3
station_ID
263903
station_name
N14_Falkenberg
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.58
temperature_water_CTD_10m
6.47
temperature_water_CTD_5m
6.61
total_nitrogen_0-1m
21.8
total_nitrogen_10m
15.7
total_nitrogen_5m
21.7
total_phosphorus_0-1m
0.68
total_phosphorus_10m
0.52
total_phosphorus_5m
0.65
water_depth
31
wave_observation
3
weather_observation
0
wind_direction
1
wind_speed
6.3