marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701866
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_306
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.245
alkalinity_10m
1.258
alkalinity_5m
1.249
ammonium_NH4_0-1m
0.13
ammonium_NH4_10m
0.12
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-02-12
conductivity_CTD_0-1m
468
conductivity_CTD_10m
474
conductivity_CTD_5m
469
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86367
geographic location (longitude)
18.26383
humic_substance_0-1m
11.7
humic_substance_10m
NA
humic_substance_5m
11.7
ice_observation
7
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
5.05
nitrate_NO3_10m
5.08
nitrate_NO3_5m
5.12
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
7.8
pH_10m
7.9
pH_5m
7.8
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.46
phosphate_PO4_10m
0.47
phosphate_PO4_5m
0.46
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.897
salinity_CTD_10m
4.968
salinity_CTD_5m
4.91
salinity_average
4.93
sample name
P20310_306
sample_DNA_concentration
23.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
30.66
silicate_SiO3_10m
30.48
silicate_SiO3_5m
30.55
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
-0.203
temperature_water_CTD_10m
-0.218
temperature_water_CTD_5m
-0.202
total_nitrogen_0-1m
19.78
total_nitrogen_10m
18.78
total_nitrogen_5m
19.06
total_phosphorus_0-1m
0.75
total_phosphorus_10m
0.7
total_phosphorus_5m
0.7
water_depth
84
wave_observation
NA
weather_observation
0
wind_direction
32
wind_speed
8