marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702259
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_353
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.215
alkalinity_10m
1.218
alkalinity_5m
1.212
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
NA
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.98
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-08-06
conductivity_CTD_0-1m
665
conductivity_CTD_10m
659
conductivity_CTD_5m
665
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.85
dissolved_oxygen_O2_CTD_10m
6.84
dissolved_oxygen_O2_CTD_5m
6.86
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.65283
geographic location (longitude)
18.95217
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
UMU
pH_0-1m
8.1
pH_10m
8.1
pH_5m
8.1
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
NA
phosphate_PO4_5m
NA
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.687
salinity_CTD_10m
4.694
salinity_CTD_5m
4.682
salinity_average
4.69
sample name
P20107_353
sample_DNA_concentration
18.9
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
NA
silicate_SiO3_5m
NA
station_ID
190745
station_name
C3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
14.206
temperature_water_CTD_10m
13.766
temperature_water_CTD_5m
14.217
total_nitrogen_0-1m
16.99
total_nitrogen_10m
17.06
total_nitrogen_5m
17.71
total_phosphorus_0-1m
0.31
total_phosphorus_10m
0.33
total_phosphorus_5m
0.41
water_depth
196
wave_observation
1
weather_observation
1
wind_direction
22
wind_speed
7