marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701936
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
5.5
Submitter Id
P20310_376
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
0.87
alkalinity_10m
0.871
alkalinity_5m
0.874
ammonium_NH4_0-1m
0.09
ammonium_NH4_10m
0.1
ammonium_NH4_5m
0.12
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-12-09
conductivity_CTD_0-1m
336
conductivity_CTD_10m
336
conductivity_CTD_5m
336
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.1
dissolved_oxygen_O2_CTD_10m
8.22
dissolved_oxygen_O2_CTD_5m
8.04
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
64.70783
geographic location (longitude)
22.06617
humic_substance_0-1m
15.3
humic_substance_10m
NA
humic_substance_5m
15.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
4.73
nitrate_NO3_10m
4.76
nitrate_NO3_5m
4.8
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
7.8
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.06
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.065
salinity_CTD_10m
3.067
salinity_CTD_5m
3.067
salinity_average
3.07
sample name
P20310_376
sample_DNA_concentration
2.14
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
39.17
silicate_SiO3_10m
38.81
silicate_SiO3_5m
39.17
station_ID
200698
station_name
A13
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.378
temperature_water_CTD_10m
3.351
temperature_water_CTD_5m
3.352
total_nitrogen_0-1m
17.85
total_nitrogen_10m
17.92
total_nitrogen_5m
17.85
total_phosphorus_0-1m
0.2
total_phosphorus_10m
0.2
total_phosphorus_5m
0.2
water_depth
123
wave_observation
4
weather_observation
2
wind_direction
33
wind_speed
13