marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701801
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_235
air_pressure
998
air_temperature
4.4
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.6
chlorophyll_a_10m
3.9
chlorophyll_a_5m
3.4
cloud_observation
8
collection date
2019-03-16
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.9
dissolved_oxygen_O2_CTD_10m
8.9
dissolved_oxygen_O2_CTD_5m
8.9
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
54.97118
geographic location (longitude)
14.09888
humic_substance_0-1m
7.7
humic_substance_10m
7.8
humic_substance_5m
7.8
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
1.45
nitrate_NO3_10m
1.43
nitrate_NO3_5m
1.48
nitrite+nitrate_NO2+NO3_0-1m
1.54
nitrite+nitrate_NO2+NO3_10m
1.52
nitrite+nitrate_NO2+NO3_5m
1.56
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8.16
pH_10m
8.14
pH_5m
8.16
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.52
phosphate_PO4_10m
0.52
phosphate_PO4_5m
0.52
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.77
salinity_CTD_10m
7.77
salinity_CTD_5m
7.77
salinity_average
7.77
sample name
P20310_235
sample_DNA_concentration
12.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
13.8
silicate_SiO3_10m
13.9
silicate_SiO3_5m
13.8
station_ID
263725
station_name
BY2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.03
temperature_water_CTD_10m
4.02
temperature_water_CTD_5m
4.03
total_nitrogen_0-1m
23.4
total_nitrogen_10m
21
total_nitrogen_5m
21.5
total_phosphorus_0-1m
0.97
total_phosphorus_10m
0.95
total_phosphorus_5m
0.95
water_depth
47
wave_observation
4
weather_observation
6
wind_direction
20
wind_speed
7.2