marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702134
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20107_222
air_pressure
984
air_temperature
5.5
alkalinity_0-1m
2.071
alkalinity_10m
2.081
alkalinity_5m
2.071
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2
chlorophyll_a_10m
1.5
chlorophyll_a_5m
1.4
cloud_observation
8
collection date
2019-03-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.9
dissolved_oxygen_O2_CTD_10m
7.9
dissolved_oxygen_O2_CTD_5m
7.9
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66867
geographic location (longitude)
12.11163
humic_substance_0-1m
4.8
humic_substance_10m
4.8
humic_substance_5m
4.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.2
nitrate_NO3_10m
0.19
nitrate_NO3_5m
0.19
nitrite+nitrate_NO2+NO3_0-1m
0.23
nitrite+nitrate_NO2+NO3_10m
0.22
nitrite+nitrate_NO2+NO3_5m
0.22
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.17
pH_10m
8.17
pH_5m
8.17
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.11
phosphate_PO4_5m
0.11
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
22.76
salinity_CTD_10m
22.78
salinity_CTD_5m
22.76
salinity_average
22.77
sample name
P20107_222
sample_DNA_concentration
7.46
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
1.8
silicate_SiO3_10m
1.8
silicate_SiO3_5m
1.8
station_ID
264876
station_name
Anholt_E
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.36
temperature_water_CTD_10m
4.36
temperature_water_CTD_5m
4.36
total_nitrogen_0-1m
20.3
total_nitrogen_10m
15.1
total_nitrogen_5m
15.6
total_phosphorus_0-1m
0.65
total_phosphorus_10m
0.51
total_phosphorus_5m
0.56
water_depth
63
wave_observation
4
weather_observation
2
wind_direction
22
wind_speed
13