marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702230
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
2
Submitter Id
P20107_324
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.28
ammonium_NH4_10m
0.36
ammonium_NH4_5m
0.23
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-04-29
conductivity_CTD_0-1m
348
conductivity_CTD_10m
376
conductivity_CTD_5m
363
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.52517
geographic location (longitude)
19.80817
humic_substance_0-1m
23
humic_substance_10m
NA
humic_substance_5m
18.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.33
nitrate_NO3_10m
0.76
nitrate_NO3_5m
0.51
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.13
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
8.2
pH_10m
8.2
pH_5m
8.2
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.11
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
2
salinity_CTD_0-1m
2.953
salinity_CTD_10m
3.404
salinity_CTD_5m
3.199
salinity_average
3.19
sample name
P20107_324
sample_DNA_concentration
17.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
37.74
silicate_SiO3_10m
30.74
silicate_SiO3_5m
34.36
station_ID
263629
station_name
B7
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.844
temperature_water_CTD_10m
3.865
temperature_water_CTD_5m
4.735
total_nitrogen_0-1m
19.92
total_nitrogen_10m
16.56
total_nitrogen_5m
16.71
total_phosphorus_0-1m
0.68
total_phosphorus_10m
0.37
total_phosphorus_5m
0.39
water_depth
22
wave_observation
1
weather_observation
0
wind_direction
17
wind_speed
6