marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701833
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
9.3
Submitter Id
P20310_267
air_pressure
NA
air_temperature
6
alkalinity_0-1m
1.58
alkalinity_10m
1.59
alkalinity_5m
1.58
ammonium_NH4_0-1m
0.1
ammonium_NH4_10m
0.07
ammonium_NH4_5m
0.1
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.35
chlorophyll_a_10m
1.77
chlorophyll_a_5m
2.07
cloud_observation
1
collection date
2019-09-23
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.04
dissolved_oxygen_O2_CTD_10m
6.84
dissolved_oxygen_O2_CTD_5m
6.64
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.80333
geographic location (longitude)
17.62367
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.04
nitrite+nitrate_NO2+NO3_10m
0.03
nitrite+nitrate_NO2+NO3_5m
0.04
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.47
phosphate_PO4_10m
0.41
phosphate_PO4_5m
0.47
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.611
salinity_CTD_10m
6.689
salinity_CTD_5m
6.627
salinity_average
6.64
sample name
P20310_267
sample_DNA_concentration
27.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
18.17
silicate_SiO3_10m
18.21
silicate_SiO3_5m
18.18
station_ID
263738
station_name
B1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.4
temperature_water_CTD_10m
10.08
temperature_water_CTD_5m
10.38
total_nitrogen_0-1m
21.93
total_nitrogen_10m
20.62
total_nitrogen_5m
21.35
total_phosphorus_0-1m
1.01
total_phosphorus_10m
0.9
total_phosphorus_5m
0.99
water_depth
40.8
wave_observation
1
weather_observation
1
wind_direction
9
wind_speed
5