marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701895
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_335
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
0.864
alkalinity_10m
0.868
alkalinity_5m
0.854
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
NA
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-06-12
conductivity_CTD_0-1m
343
conductivity_CTD_10m
342
conductivity_CTD_5m
343
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.49
dissolved_oxygen_O2_CTD_10m
8.82
dissolved_oxygen_O2_CTD_5m
8.81
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
64.708
geographic location (longitude)
22.06733
humic_substance_0-1m
14.7
humic_substance_10m
NA
humic_substance_5m
14.8
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
UMU
pH_0-1m
7.9
pH_10m
8
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
NA
phosphate_PO4_5m
NA
project name
PRJEB55296
replicate
2
salinity_CTD_0-1m
2.919
salinity_CTD_10m
2.943
salinity_CTD_5m
2.917
salinity_average
2.93
sample name
P20310_335
sample_DNA_concentration
5.42
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
NA
silicate_SiO3_5m
NA
station_ID
200698
station_name
A13
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
5.748
temperature_water_CTD_10m
5.364
temperature_water_CTD_5m
5.772
total_nitrogen_0-1m
17.63
total_nitrogen_10m
17.42
total_nitrogen_5m
17.21
total_phosphorus_0-1m
0.2
total_phosphorus_10m
0.18
total_phosphorus_5m
0.18
water_depth
123
wave_observation
0
weather_observation
0
wind_direction
32
wind_speed
2