fermentation metagenome
collection_date
2021-04
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Homo sapiens
lat_lon
47.36 N 8.55 E
sequencing_depth
39177948
experiment
human1
Sample_description
TR1-28
Reactor
TR1
Treatment
VAN+CCUG59168
Day_of_Connection
28
Day_of_Treatment
-1
Day_from_Inoculum
43
Phase
Stab
Treatment2
AB+E. faecium
Date
NA
Reactor_Treatment
TR1_VAN+CCUG59168
Reactor_F1_F2
VAN_CCUG59168_1_90
Model
Human
Model2
Human1
GeneCopyNumberperML
111000000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0.053
Glucose_mM
0.173
Galactose_mM
0
Succinat_mM
0.901
Lactat_mM
0.534
Formiat_mM
5.278
Acetat_mM
77.645
Propionat_mM
23.407
Isobutyrat_mM
3.886
Butyrat_mM
40.871
Isovalerat_mM
4.754
Valerat_mM
1.239
Total_SCFA_mM
158.741
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated