marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702199
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
8.8
Submitter Id
P20107_287
air_pressure
NA
air_temperature
1
alkalinity_0-1m
1.63
alkalinity_10m
1.63
alkalinity_5m
1.63
ammonium_NH4_0-1m
0.06
ammonium_NH4_10m
0.06
ammonium_NH4_5m
0.15
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.5
chlorophyll_a_5m
0.5
cloud_observation
0
collection date
2020-01-22
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.75
dissolved_oxygen_O2_CTD_10m
8.28
dissolved_oxygen_O2_CTD_5m
8.29
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.80333
geographic location (longitude)
17.62367
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
5.92
nitrite+nitrate_NO2+NO3_10m
5.95
nitrite+nitrate_NO2+NO3_5m
5.93
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.97
phosphate_PO4_10m
1.01
phosphate_PO4_5m
0.97
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.08
salinity_CTD_10m
7.09
salinity_CTD_5m
7.09
salinity_average
7.09
sample name
P20107_287
sample_DNA_concentration
6.96
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
24.8
silicate_SiO3_10m
24.74
silicate_SiO3_5m
24.7
station_ID
263738
station_name
B1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.04
temperature_water_CTD_10m
4.05
temperature_water_CTD_5m
4.04
total_nitrogen_0-1m
23.2
total_nitrogen_10m
23.4
total_nitrogen_5m
23.31
total_phosphorus_0-1m
1.17
total_phosphorus_10m
1.17
total_phosphorus_5m
1.17
water_depth
41.9
wave_observation
1
weather_observation
0
wind_direction
32
wind_speed
12