marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701859
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20310_293
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.15
ammonium_NH4_10m
0.14
ammonium_NH4_5m
0.14
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-01-14
conductivity_CTD_0-1m
524
conductivity_CTD_10m
529
conductivity_CTD_5m
524
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.56
dissolved_oxygen_O2_CTD_10m
8.5
dissolved_oxygen_O2_CTD_5m
8.55
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.525
geographic location (longitude)
19.80933
humic_substance_0-1m
11.5
humic_substance_10m
NA
humic_substance_5m
11.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
NA
nitrate_NO3_0-1m
5.15
nitrate_NO3_10m
5.1
nitrate_NO3_5m
5.15
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.1
origin
UMU
pH_0-1m
8
pH_10m
8
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.6
phosphate_PO4_10m
0.6
phosphate_PO4_5m
0.59
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.192
salinity_CTD_10m
5.215
salinity_CTD_5m
5.194
salinity_average
5.20
sample name
P20310_293
sample_DNA_concentration
11.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
29.69
silicate_SiO3_10m
30.19
silicate_SiO3_5m
30.55
station_ID
263629
station_name
B7
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
1.685
temperature_water_CTD_10m
1.846
temperature_water_CTD_5m
1.702
total_nitrogen_0-1m
18.78
total_nitrogen_10m
18.88
total_nitrogen_5m
19.06
total_phosphorus_0-1m
0.77
total_phosphorus_10m
0.77
total_phosphorus_5m
0.78
water_depth
23
wave_observation
2
weather_observation
7
wind_direction
16
wind_speed
15