marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701907
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_347
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.312
alkalinity_10m
1.323
alkalinity_5m
1.315
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
NA
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.16
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-06-11
conductivity_CTD_0-1m
640
conductivity_CTD_10m
629
conductivity_CTD_5m
635
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.49
dissolved_oxygen_O2_CTD_10m
8.68
dissolved_oxygen_O2_CTD_5m
8.61
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.65267
geographic location (longitude)
18.95233
humic_substance_0-1m
9.3
humic_substance_10m
NA
humic_substance_5m
9.3
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
UMU
pH_0-1m
8.3
pH_10m
8.3
pH_5m
8.3
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
NA
phosphate_PO4_5m
NA
project name
PRJEB55296
replicate
2
salinity_CTD_0-1m
5.113
salinity_CTD_10m
5.138
salinity_CTD_5m
5.122
salinity_average
5.12
sample name
P20310_347
sample_DNA_concentration
20
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
NA
silicate_SiO3_5m
NA
station_ID
190745
station_name
C3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
9.372
temperature_water_CTD_10m
8.53
temperature_water_CTD_5m
9.036
total_nitrogen_0-1m
15.64
total_nitrogen_10m
14.85
total_nitrogen_5m
14.99
total_phosphorus_0-1m
0.3
total_phosphorus_10m
0.29
total_phosphorus_5m
0.3
water_depth
196
wave_observation
2
weather_observation
1
wind_direction
35
wind_speed
4