fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
46752562
experiment
chicken1
Sample_description
TR3-17
Reactor
TR3
Treatment
HV292.1
Day_of_Connection
17
Day_of_Treatment
1
Day_from_Inoculum
40
Phase
Treat
Treatment2
E. coli
Date
NA
Reactor_Treatment
TR3_HV292.1
Reactor_F1_F2
HV292_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
52400000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
NA
Antibiotic
NA
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.751
Lactat_mM
0
Formiat_mM
0
Acetat_mM
86.398
Propionat_mM
11.689
Isobutyrat_mM
8.204
Butyrat_mM
35.082
Isovalerat_mM
6.429
Valerat_mM
6.96
Total_SCFA_mM
155.513
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated