fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
59768778
experiment
chicken1
Sample_description
TR2-64
Reactor
TR2
Treatment
CTX
Day_of_Connection
64
Day_of_Treatment
48
Day_from_Inoculum
87
Phase
Treat
Treatment2
AB
Date
NA
Reactor_Treatment
TR2_CTX
Reactor_F1_F2
CTX_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
27900000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
20
Antibiotic
CTX
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.511
Lactat_mM
0
Formiat_mM
2.219
Acetat_mM
57.91
Propionat_mM
13.311
Isobutyrat_mM
7.44
Butyrat_mM
35.756
Isovalerat_mM
6.925
Valerat_mM
0.233
Total_SCFA_mM
124.305
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated