marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702210
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
1.5
Submitter Id
P20107_304
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.84
ammonium_NH4_10m
0.86
ammonium_NH4_5m
1.05
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-01-29
conductivity_CTD_0-1m
216
conductivity_CTD_10m
258
conductivity_CTD_5m
243
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.73
geographic location (longitude)
22.44667
humic_substance_0-1m
70.4
humic_substance_10m
NA
humic_substance_5m
23.6
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
7.28
nitrate_NO3_10m
5.71
nitrate_NO3_5m
5.67
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.36
nitrite_NO2_10m
0.15
nitrite_NO2_5m
0.19
origin
UMU
pH_0-1m
7.3
pH_10m
7.8
pH_5m
7.7
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.11
phosphate_PO4_10m
0.11
phosphate_PO4_5m
0.08
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.117
salinity_CTD_10m
2.58
salinity_CTD_5m
2.384
salinity_average
2.36
sample name
P20107_304
sample_DNA_concentration
14.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
236
silicate_SiO3_10m
53.76
silicate_SiO3_5m
61.6
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
0.387
temperature_water_CTD_10m
0.049
temperature_water_CTD_5m
0.479
total_nitrogen_0-1m
36.55
total_nitrogen_10m
20.35
total_nitrogen_5m
21.13
total_phosphorus_0-1m
0.23
total_phosphorus_10m
0.23
total_phosphorus_5m
0.22
water_depth
12
wave_observation
NA
weather_observation
7
wind_direction
33
wind_speed
5