marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702214
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
4
Submitter Id
P20107_308
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.26
ammonium_NH4_10m
0.25
ammonium_NH4_5m
0.26
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
4
collection date
2019-02-26
conductivity_CTD_0-1m
472
conductivity_CTD_10m
472
conductivity_CTD_5m
472
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.52567
geographic location (longitude)
19.80833
humic_substance_0-1m
12.7
humic_substance_10m
NA
humic_substance_5m
12.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
5.1
nitrate_NO3_10m
5.1
nitrate_NO3_5m
5.19
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.12
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.48
phosphate_PO4_10m
0.49
phosphate_PO4_5m
0.49
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.833
salinity_CTD_10m
4.842
salinity_CTD_5m
4.835
salinity_average
4.84
sample name
P20107_308
sample_DNA_concentration
12.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
32.65
silicate_SiO3_10m
32.47
silicate_SiO3_5m
32.79
station_ID
263629
station_name
B7
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
0.451
temperature_water_CTD_10m
0.413
temperature_water_CTD_5m
0.429
total_nitrogen_0-1m
17.56
total_nitrogen_10m
18.28
total_nitrogen_5m
18.28
total_phosphorus_0-1m
0.65
total_phosphorus_10m
0.66
total_phosphorus_5m
0.65
water_depth
23
wave_observation
1
weather_observation
1
wind_direction
1
wind_speed
3