marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701902
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20310_342
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.07
ammonium_NH4_10m
0.06
ammonium_NH4_5m
0.06
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-07-08
conductivity_CTD_0-1m
578
conductivity_CTD_10m
574
conductivity_CTD_5m
577
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.49
dissolved_oxygen_O2_CTD_10m
7.43
dissolved_oxygen_O2_CTD_5m
7.5
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.49933
geographic location (longitude)
19.81817
humic_substance_0-1m
13.3
humic_substance_10m
NA
humic_substance_5m
13.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.04
nitrate_NO3_10m
0.06
nitrate_NO3_5m
0.04
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.433
salinity_CTD_10m
4.484
salinity_CTD_5m
4.437
salinity_average
4.45
sample name
P20310_342
sample_DNA_concentration
27.2
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
29.87
silicate_SiO3_10m
29.84
silicate_SiO3_5m
30.01
station_ID
264450
station_name
B3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.587
temperature_water_CTD_10m
9.933
temperature_water_CTD_5m
10.521
total_nitrogen_0-1m
17.28
total_nitrogen_10m
19.35
total_nitrogen_5m
18.78
total_phosphorus_0-1m
0.35
total_phosphorus_10m
0.39
total_phosphorus_5m
0.39
water_depth
24
wave_observation
3
weather_observation
2
wind_direction
4
wind_speed
11