marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702291
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_385
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.383
alkalinity_10m
1.383
alkalinity_5m
1.384
ammonium_NH4_0-1m
0.11
ammonium_NH4_10m
0.08
ammonium_NH4_5m
0.09
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2020-01-18
conductivity_CTD_0-1m
570
conductivity_CTD_10m
567
conductivity_CTD_5m
567
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.65217
geographic location (longitude)
18.95217
humic_substance_0-1m
9.8
humic_substance_10m
NA
humic_substance_5m
9.8
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
3.17
nitrate_NO3_10m
3.22
nitrate_NO3_5m
3.22
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
UMU
pH_0-1m
7.96
pH_10m
7.97
pH_5m
7.96
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.44
phosphate_PO4_10m
0.44
phosphate_PO4_5m
0.44
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.453
salinity_CTD_10m
5.452
salinity_CTD_5m
5.452
salinity_average
5.45
sample name
P20107_385
sample_DNA_concentration
3.03
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
27.42
silicate_SiO3_10m
27.45
silicate_SiO3_5m
27.49
station_ID
190745
station_name
C3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.989
temperature_water_CTD_10m
2.842
temperature_water_CTD_5m
2.838
total_nitrogen_0-1m
18.63
total_nitrogen_10m
18.56
total_nitrogen_5m
19.06
total_phosphorus_0-1m
0.65
total_phosphorus_10m
0.64
total_phosphorus_5m
0.64
water_depth
196
wave_observation
2
weather_observation
4
wind_direction
36
wind_speed
5