marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702157
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_245
air_pressure
1021
air_temperature
3.2
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.1
chlorophyll_a_5m
1.2
cloud_observation
9
collection date
2019-03-19
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.9
dissolved_oxygen_O2_CTD_10m
8.9
dissolved_oxygen_O2_CTD_5m
8.9
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.55527
geographic location (longitude)
18.40017
humic_substance_0-1m
7.4
humic_substance_10m
7.4
humic_substance_5m
7.3
ice_observation
9
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
2.3
nitrate_NO3_10m
2.27
nitrate_NO3_5m
2.26
nitrite+nitrate_NO2+NO3_0-1m
2.4
nitrite+nitrate_NO2+NO3_10m
2.37
nitrite+nitrate_NO2+NO3_5m
2.36
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.1
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.67
phosphate_PO4_10m
0.65
phosphate_PO4_5m
0.65
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.47
salinity_CTD_10m
7.47
salinity_CTD_5m
7.46
salinity_average
7.47
sample name
P20107_245
sample_DNA_concentration
3.46
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.6
silicate_SiO3_10m
15.5
silicate_SiO3_5m
15.5
station_ID
263953
station_name
BCS_III-10
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
3.72
temperature_water_CTD_10m
3.67
temperature_water_CTD_5m
3.67
total_nitrogen_0-1m
18.9
total_nitrogen_10m
19.8
total_nitrogen_5m
19.1
total_phosphorus_0-1m
0.93
total_phosphorus_10m
0.92
total_phosphorus_5m
0.92
water_depth
90
wave_observation
9
weather_observation
9
wind_direction
25
wind_speed
6