marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701873
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
3
Submitter Id
P20310_313
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.16
ammonium_NH4_10m
0.15
ammonium_NH4_5m
0.17
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-04-03
conductivity_CTD_0-1m
471
conductivity_CTD_10m
471
conductivity_CTD_5m
471
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.525
geographic location (longitude)
19.80783
humic_substance_0-1m
13.3
humic_substance_10m
NA
humic_substance_5m
13.3
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
4.23
nitrate_NO3_10m
4.25
nitrate_NO3_5m
4.25
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.14
nitrite_NO2_10m
0.14
nitrite_NO2_5m
0.14
origin
UMU
pH_0-1m
8
pH_10m
8
pH_5m
8
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.35
phosphate_PO4_10m
0.35
phosphate_PO4_5m
0.35
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.73
salinity_CTD_10m
4.733
salinity_CTD_5m
4.732
salinity_average
4.73
sample name
P20310_313
sample_DNA_concentration
2.59
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
35.96
silicate_SiO3_10m
35.78
silicate_SiO3_5m
35.96
station_ID
263629
station_name
B7
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
1.071
temperature_water_CTD_10m
1.051
temperature_water_CTD_5m
1.056
total_nitrogen_0-1m
17.92
total_nitrogen_10m
17.49
total_nitrogen_5m
17.42
total_phosphorus_0-1m
0.7
total_phosphorus_10m
0.68
total_phosphorus_5m
0.66
water_depth
24
wave_observation
2
weather_observation
1
wind_direction
22
wind_speed
7