marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702097
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
4
Submitter Id
P20107_179
air_pressure
1017
air_temperature
7
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.96
ammonium_NH4_10m
0.2
ammonium_NH4_5m
1.04
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.2
chlorophyll_a_5m
0.2
cloud_observation
8
collection date
2019-12-03
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
2.89
nitrate_NO3_10m
5.66
nitrate_NO3_5m
3.56
nitrite+nitrate_NO2+NO3_0-1m
3.02
nitrite+nitrate_NO2+NO3_10m
5.73
nitrite+nitrate_NO2+NO3_5m
3.7
nitrite_NO2_0-1m
0.13
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.14
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.28
phosphate_PO4_10m
0.63
phosphate_PO4_5m
0.41
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
21.91
salinity_CTD_10m
33
salinity_CTD_5m
26.5
salinity_average
27.14
sample name
P20107_179
sample_DNA_concentration
5.79
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.2
silicate_SiO3_10m
7.2
silicate_SiO3_5m
6.3
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.44
temperature_water_CTD_10m
10.53
temperature_water_CTD_5m
8.45
total_nitrogen_0-1m
19.6
total_nitrogen_10m
14.6
total_nitrogen_5m
17.3
total_phosphorus_0-1m
0.61
total_phosphorus_10m
0.67
total_phosphorus_5m
0.7
water_depth
79
wave_observation
2
weather_observation
6
wind_direction
23
wind_speed
10