bird metagenome
library_ID
F21-00072
collection_date
2021-06-03
env_broad_scale
non applicable
env_medium
non applicable
host
Cyanocitta cristata
lat_lon
missing
geo_loc_name
USA: Maryland
env_local_scale
missing
title
Metagenomics for pathogen detection during a wildlife mortality event in songbirds
library_strategy
RNA-Seq
library_source
METATRANSCRIPTOMIC
library_selection
cDNA
library_layout
paired
platform
ILLUMINA
instrument_model
Illumina NovaSeq 6000
design_description
Bulk Extracted RNA from birds were prepared using NEBNext Ultra II RNA library preparation kit. Samples were fragmented and randomly primed for cDNA was synthesized. Samples were ligated to illumina adapters and PCR was performed to add barcodes to the adapters.
filetype
fastq
filename
RR140_033_BIRa_S33_R1_001.fastq.gz
filename2
RR140_033_BIRa_S33_R2_001.fastq.gz
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated