marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702033
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20107_115
air_pressure
1010
air_temperature
12
alkalinity_0-1m
1.71
alkalinity_10m
1.697
alkalinity_5m
1.693
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.1
chlorophyll_a_10m
1.1
chlorophyll_a_5m
1
cloud_observation
9
collection date
2019-06-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.6
dissolved_oxygen_O2_CTD_10m
7.6
dissolved_oxygen_O2_CTD_5m
7.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25
geographic location (longitude)
15.98407
humic_substance_0-1m
6.4
humic_substance_10m
6.3
humic_substance_5m
6.3
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.29
pH_10m
8.28
pH_5m
8.28
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.23
phosphate_PO4_10m
0.22
phosphate_PO4_5m
0.23
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.43
salinity_CTD_10m
7.43
salinity_CTD_5m
7.43
salinity_average
7.43
sample name
P20107_115
sample_DNA_concentration
8.95
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11.9
silicate_SiO3_10m
11.8
silicate_SiO3_5m
11.8
station_ID
263728
station_name
BY5
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
13.37
temperature_water_CTD_10m
13.38
temperature_water_CTD_5m
13.36
total_nitrogen_0-1m
23.1
total_nitrogen_10m
18.9
total_nitrogen_5m
18
total_phosphorus_0-1m
0.66
total_phosphorus_10m
0.63
total_phosphorus_5m
0.64
water_depth
91
wave_observation
4
weather_observation
4
wind_direction
4
wind_speed
15