marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701744
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_172
air_pressure
998
air_temperature
4.7
alkalinity_0-1m
2.084
alkalinity_10m
2.1
alkalinity_5m
2.093
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.3
chlorophyll_a_10m
1.8
chlorophyll_a_5m
2.1
cloud_observation
1
collection date
2019-03-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.9
dissolved_oxygen_O2_CTD_10m
7.8
dissolved_oxygen_O2_CTD_5m
7.8
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66832
geographic location (longitude)
12.11
humic_substance_0-1m
5.1
humic_substance_10m
5
humic_substance_5m
5.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.7
nitrate_NO3_10m
0.7
nitrate_NO3_5m
0.69
nitrite+nitrate_NO2+NO3_0-1m
0.78
nitrite+nitrate_NO2+NO3_10m
0.78
nitrite+nitrate_NO2+NO3_5m
0.77
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8.16
pH_10m
8.17
pH_5m
8.16
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.13
phosphate_PO4_10m
0.12
phosphate_PO4_5m
0.13
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
23.89
salinity_CTD_10m
23.89
salinity_CTD_5m
23.89
salinity_average
23.89
sample name
P20310_172
sample_DNA_concentration
12.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.3
silicate_SiO3_10m
2.2
silicate_SiO3_5m
2.2
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.44
temperature_water_CTD_10m
4.44
temperature_water_CTD_5m
4.44
total_nitrogen_0-1m
16.9
total_nitrogen_10m
15.3
total_nitrogen_5m
15.7
total_phosphorus_0-1m
0.56
total_phosphorus_10m
0.51
total_phosphorus_5m
0.5
water_depth
60
wave_observation
4
weather_observation
1
wind_direction
30
wind_speed
13