marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:35Z
ENA-LAST-UPDATE
2023-10-06T16:50:35Z
External Id
SAMEA110701712
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:35Z
INSDC last update
2023-10-06T16:50:35Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20310_140
air_pressure
1004
air_temperature
4.3
alkalinity_0-1m
1.71
alkalinity_10m
1.704
alkalinity_5m
1.707
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.3
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.3
cloud_observation
8
collection date
2019-02-19
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.9
dissolved_oxygen_O2_CTD_10m
9
dissolved_oxygen_O2_CTD_5m
9
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25005
geographic location (longitude)
15.98423
humic_substance_0-1m
7.5
humic_substance_10m
7.6
humic_substance_5m
7.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
2.01
nitrate_NO3_10m
2.02
nitrate_NO3_5m
2.02
nitrite+nitrate_NO2+NO3_0-1m
2.13
nitrite+nitrate_NO2+NO3_10m
2.13
nitrite+nitrate_NO2+NO3_5m
2.14
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.12
origin
SMHI
pH_0-1m
8.11
pH_10m
8.12
pH_5m
8.11
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.59
phosphate_PO4_10m
0.59
phosphate_PO4_5m
0.58
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.69
salinity_CTD_10m
7.69
salinity_CTD_5m
7.7
salinity_average
7.69
sample name
P20310_140
sample_DNA_concentration
4.05
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.1
silicate_SiO3_10m
14
silicate_SiO3_5m
14
station_ID
263728
station_name
BY5
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.77
temperature_water_CTD_10m
3.77
temperature_water_CTD_5m
3.78
total_nitrogen_0-1m
21.8
total_nitrogen_10m
20.8
total_nitrogen_5m
20.3
total_phosphorus_0-1m
1.09
total_phosphorus_10m
0.92
total_phosphorus_5m
0.92
water_depth
90
wave_observation
3
weather_observation
2
wind_direction
22
wind_speed
9