marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702289
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20107_383
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.79
ammonium_NH4_10m
0.56
ammonium_NH4_5m
0.61
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2020-01-17
conductivity_CTD_0-1m
203
conductivity_CTD_10m
223
conductivity_CTD_5m
212
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.73
geographic location (longitude)
22.44667
humic_substance_0-1m
22.7
humic_substance_10m
NA
humic_substance_5m
20.1
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
5.25
nitrate_NO3_10m
5.18
nitrate_NO3_5m
5.03
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.1
origin
UMU
pH_0-1m
7.65
pH_10m
7.8
pH_5m
7.77
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.11
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.005
salinity_CTD_10m
2.217
salinity_CTD_5m
2.103
salinity_average
2.11
sample name
P20107_383
sample_DNA_concentration
3.68
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
52.34
silicate_SiO3_10m
47.35
silicate_SiO3_5m
46.64
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
-0.098
temperature_water_CTD_10m
-0.076
temperature_water_CTD_5m
-0.078
total_nitrogen_0-1m
18.06
total_nitrogen_10m
18.78
total_nitrogen_5m
17.92
total_phosphorus_0-1m
0.19
total_phosphorus_10m
0.2
total_phosphorus_5m
0.19
water_depth
13
wave_observation
NA
weather_observation
2
wind_direction
NA
wind_speed
3