marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702250
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
3
Submitter Id
P20107_344
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.19
ammonium_NH4_10m
0.47
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.26
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-07-10
conductivity_CTD_0-1m
279
conductivity_CTD_10m
297
conductivity_CTD_5m
281
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.89
dissolved_oxygen_O2_CTD_10m
7.46
dissolved_oxygen_O2_CTD_5m
7.15
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.73
geographic location (longitude)
22.44667
humic_substance_0-1m
25.9
humic_substance_10m
NA
humic_substance_5m
24.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
1.27
nitrate_NO3_10m
4.28
nitrate_NO3_5m
1.78
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.19
nitrite_NO2_10m
0.17
nitrite_NO2_5m
0.19
origin
UMU
pH_0-1m
7.8
pH_10m
7.6
pH_5m
7.8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.03
phosphate_PO4_10m
0.04
phosphate_PO4_5m
0.03
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2
salinity_CTD_10m
2.198
salinity_CTD_5m
2
salinity_average
2.07
sample name
P20107_344
sample_DNA_concentration
14.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
61.24
silicate_SiO3_10m
52.7
silicate_SiO3_5m
59.1
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
13.689
temperature_water_CTD_10m
10.375
temperature_water_CTD_5m
13.423
total_nitrogen_0-1m
17.85
total_nitrogen_10m
20.42
total_nitrogen_5m
18.56
total_phosphorus_0-1m
0.24
total_phosphorus_10m
0.25
total_phosphorus_5m
0.25
water_depth
13
wave_observation
1
weather_observation
1
wind_direction
4
wind_speed
3