marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110702074
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20107_156
air_pressure
1007.2
air_temperature
5.7
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.52
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.6
chlorophyll_a_10m
2.5
chlorophyll_a_5m
2.8
cloud_observation
7
collection date
2019-11-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.6
dissolved_oxygen_O2_CTD_10m
6.5
dissolved_oxygen_O2_CTD_5m
6.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.44167
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.12
nitrate_NO3_10m
0.51
nitrate_NO3_5m
0.19
nitrite+nitrate_NO2+NO3_0-1m
0.12
nitrite+nitrate_NO2+NO3_10m
0.56
nitrite+nitrate_NO2+NO3_5m
0.19
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.15
phosphate_PO4_5m
0.12
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
22.28
salinity_CTD_10m
23.99
salinity_CTD_5m
23.02
salinity_average
23.10
sample name
P20107_156
sample_DNA_concentration
14
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.1
silicate_SiO3_10m
0.9
silicate_SiO3_5m
0.2
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
7.93
temperature_water_CTD_10m
7.72
temperature_water_CTD_5m
7.85
total_nitrogen_0-1m
17.3
total_nitrogen_10m
NA
total_nitrogen_5m
15.3
total_phosphorus_0-1m
0.51
total_phosphorus_10m
NA
total_phosphorus_5m
0.58
water_depth
79
wave_observation
2
weather_observation
1
wind_direction
3
wind_speed
4