marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702046
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_128
air_pressure
1020
air_temperature
0.8
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.2
chlorophyll_a_10m
4.7
chlorophyll_a_5m
3.7
cloud_observation
8
collection date
2019-04-10
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.5
dissolved_oxygen_O2_CTD_10m
9.5
dissolved_oxygen_O2_CTD_5m
9.5
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.11712
geographic location (longitude)
17.66855
humic_substance_0-1m
7.4
humic_substance_10m
7.4
humic_substance_5m
7.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.53
phosphate_PO4_10m
0.5
phosphate_PO4_5m
0.51
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.05
salinity_CTD_10m
7.05
salinity_CTD_5m
7.05
salinity_average
7.05
sample name
P20107_128
sample_DNA_concentration
19.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
18.4
silicate_SiO3_10m
18.4
silicate_SiO3_5m
18.4
station_ID
263979
station_name
BY38
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
3.6
temperature_water_CTD_10m
3.61
temperature_water_CTD_5m
3.61
total_nitrogen_0-1m
20.3
total_nitrogen_10m
21.6
total_nitrogen_5m
20.8
total_phosphorus_0-1m
0.86
total_phosphorus_10m
0.94
total_phosphorus_5m
0.88
water_depth
110
wave_observation
3
weather_observation
7
wind_direction
3
wind_speed
10