marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702218
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
3
Submitter Id
P20107_312
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
2.96
ammonium_NH4_10m
0.12
ammonium_NH4_5m
0.59
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-03-28
conductivity_CTD_0-1m
121
conductivity_CTD_10m
269
conductivity_CTD_5m
238
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.72983
geographic location (longitude)
22.44667
humic_substance_0-1m
19.6
humic_substance_10m
NA
humic_substance_5m
18.7
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
5.15
nitrate_NO3_10m
7.24
nitrate_NO3_5m
6.35
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.13
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.07
origin
UMU
pH_0-1m
7.3
pH_10m
7.6
pH_5m
7.7
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.06
phosphate_PO4_10m
0.12
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
1.141
salinity_CTD_10m
2.619
salinity_CTD_5m
2.33
salinity_average
2.03
sample name
P20107_312
sample_DNA_concentration
33
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
68.36
silicate_SiO3_10m
51.27
silicate_SiO3_5m
47
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
0.539
temperature_water_CTD_10m
0.947
temperature_water_CTD_5m
0.494
total_nitrogen_0-1m
17.85
total_nitrogen_10m
19.56
total_nitrogen_5m
18.35
total_phosphorus_0-1m
0.14
total_phosphorus_10m
0.21
total_phosphorus_5m
0.16
water_depth
13
wave_observation
NA
weather_observation
2
wind_direction
27
wind_speed
8