marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701710
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_138
air_pressure
1004
air_temperature
12.5
alkalinity_0-1m
1.738
alkalinity_10m
1.731
alkalinity_5m
1.737
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.8
chlorophyll_a_10m
1.8
chlorophyll_a_5m
2.1
cloud_observation
9
collection date
2019-10-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7
dissolved_oxygen_O2_CTD_10m
7
dissolved_oxygen_O2_CTD_5m
7
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25
geographic location (longitude)
15.98405
humic_substance_0-1m
6.7
humic_substance_10m
6.5
humic_substance_5m
6.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8.12
pH_10m
8.1
pH_5m
8.11
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.25
phosphate_PO4_10m
0.24
phosphate_PO4_5m
0.25
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.63
salinity_CTD_10m
7.63
salinity_CTD_5m
7.63
salinity_average
7.63
sample name
P20310_138
sample_DNA_concentration
5.35
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11
silicate_SiO3_10m
11
silicate_SiO3_5m
11.1
station_ID
263728
station_name
BY5
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
12.76
temperature_water_CTD_10m
12.76
temperature_water_CTD_5m
12.76
total_nitrogen_0-1m
21.9
total_nitrogen_10m
21.2
total_nitrogen_5m
22.8
total_phosphorus_0-1m
0.65
total_phosphorus_10m
0.75
total_phosphorus_5m
0.65
water_depth
91
wave_observation
9
weather_observation
9
wind_direction
11
wind_speed
4.1