marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702149
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
10
Submitter Id
P20107_237
air_pressure
999
air_temperature
8
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.22
ammonium_NH4_10m
0.32
ammonium_NH4_5m
0.26
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1
chlorophyll_a_10m
1.4
chlorophyll_a_5m
0.9
cloud_observation
2
collection date
2019-05-06
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.2
dissolved_oxygen_O2_CTD_10m
6.2
dissolved_oxygen_O2_CTD_5m
7.1
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
1.57
nitrate_NO3_10m
5.02
nitrate_NO3_5m
1.65
nitrite+nitrate_NO2+NO3_0-1m
1.69
nitrite+nitrate_NO2+NO3_10m
5.29
nitrite+nitrate_NO2+NO3_5m
1.8
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.27
nitrite_NO2_5m
0.15
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.15
phosphate_PO4_10m
0.5
phosphate_PO4_5m
0.16
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
28.46
salinity_CTD_10m
33.09
salinity_CTD_5m
28.64
salinity_average
30.06
sample name
P20107_237
sample_DNA_concentration
9.24
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.3
silicate_SiO3_10m
6
silicate_SiO3_5m
3.3
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
7.75
temperature_water_CTD_10m
6.72
temperature_water_CTD_5m
7.74
total_nitrogen_0-1m
13.5
total_nitrogen_10m
15
total_nitrogen_5m
15.3
total_phosphorus_0-1m
0.48
total_phosphorus_10m
0.8
total_phosphorus_5m
0.56
water_depth
74
wave_observation
3
weather_observation
1
wind_direction
23
wind_speed
8