marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702049
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_131
air_pressure
NA
air_temperature
17.9
alkalinity_0-1m
1.948
alkalinity_10m
2.064
alkalinity_5m
1.95
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1
chlorophyll_a_10m
1.4
chlorophyll_a_5m
1
cloud_observation
6
collection date
2019-06-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66795
geographic location (longitude)
12.1109
humic_substance_0-1m
5.4
humic_substance_10m
4.4
humic_substance_5m
4.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bornholm Basin and Han� Bay
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.19
pH_10m
8.13
pH_5m
8.18
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.06
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
NA
salinity_CTD_10m
NA
salinity_CTD_5m
NA
salinity_average
NA
sample name
P20107_131
sample_DNA_concentration
2.79
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
1.6
silicate_SiO3_10m
1.3
silicate_SiO3_5m
1.6
station_ID
264876
station_name
Anholt_E
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
NA
temperature_water_CTD_10m
NA
temperature_water_CTD_5m
NA
total_nitrogen_0-1m
16.6
total_nitrogen_10m
15.3
total_nitrogen_5m
16.6
total_phosphorus_0-1m
0.56
total_phosphorus_10m
0.52
total_phosphorus_5m
0.55
water_depth
62
wave_observation
2
weather_observation
1
wind_direction
9
wind_speed
4