marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702116
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_204
air_pressure
1031
air_temperature
0.6
alkalinity_0-1m
2.058
alkalinity_10m
2.101
alkalinity_5m
2.057
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.6
chlorophyll_a_10m
2.9
chlorophyll_a_5m
4.2
cloud_observation
9
collection date
2019-02-22
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.6
dissolved_oxygen_O2_CTD_10m
8.3
dissolved_oxygen_O2_CTD_5m
8.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.6685
geographic location (longitude)
12.11105
humic_substance_0-1m
5.7
humic_substance_10m
4.9
humic_substance_5m
5.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.81
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.86
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.21
pH_10m
8.16
pH_5m
8.21
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.1
phosphate_PO4_10m
0.21
phosphate_PO4_5m
0.1
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
21.54
salinity_CTD_10m
22.34
salinity_CTD_5m
21.54
salinity_average
21.81
sample name
P20107_204
sample_DNA_concentration
17
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.5
silicate_SiO3_10m
2
silicate_SiO3_5m
0.5
station_ID
264876
station_name
Anholt_E
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
3.46
temperature_water_CTD_10m
3.51
temperature_water_CTD_5m
3.46
total_nitrogen_0-1m
14.3
total_nitrogen_10m
13.7
total_nitrogen_5m
14.5
total_phosphorus_0-1m
0.73
total_phosphorus_10m
0.74
total_phosphorus_5m
0.72
water_depth
63
wave_observation
9
weather_observation
9
wind_direction
10
wind_speed
11.5