marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702081
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_163
air_pressure
1011
air_temperature
11.3
alkalinity_0-1m
1.635
alkalinity_10m
1.631
alkalinity_5m
1.637
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.9
chlorophyll_a_10m
1.6
chlorophyll_a_5m
1.9
cloud_observation
9
collection date
2019-10-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.1
dissolved_oxygen_O2_CTD_10m
7.1
dissolved_oxygen_O2_CTD_5m
7.1
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.3122
geographic location (longitude)
20.07623
humic_substance_0-1m
7.4
humic_substance_10m
7.5
humic_substance_5m
7.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.18
pH_10m
8.18
pH_5m
8.19
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.1
phosphate_PO4_10m
0.09
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.7
salinity_CTD_10m
6.7
salinity_CTD_5m
6.7
salinity_average
6.70
sample name
P20107_163
sample_DNA_concentration
7.63
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.8
silicate_SiO3_10m
9.7
silicate_SiO3_5m
9.7
station_ID
263730
station_name
BY15
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
12.3
temperature_water_CTD_10m
12.29
temperature_water_CTD_5m
12.29
total_nitrogen_0-1m
20.1
total_nitrogen_10m
21.4
total_nitrogen_5m
19.7
total_phosphorus_0-1m
0.5
total_phosphorus_10m
0.54
total_phosphorus_5m
0.49
water_depth
239
wave_observation
9
weather_observation
9
wind_direction
10
wind_speed
9