marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701749
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20310_177
air_pressure
1011
air_temperature
4
alkalinity_0-1m
2.05
alkalinity_10m
2.062
alkalinity_5m
2.06
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
7.8
chlorophyll_a_10m
7.6
chlorophyll_a_5m
7.9
cloud_observation
8
collection date
2019-02-20
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.7
dissolved_oxygen_O2_CTD_10m
8.6
dissolved_oxygen_O2_CTD_5m
8.7
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66863
geographic location (longitude)
12.11118
humic_substance_0-1m
5.5
humic_substance_10m
5.4
humic_substance_5m
5.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.2
pH_10m
8.18
pH_5m
8.19
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.13
phosphate_PO4_10m
0.15
phosphate_PO4_5m
0.14
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
21.65
salinity_CTD_10m
21.75
salinity_CTD_5m
21.66
salinity_average
21.69
sample name
P20310_177
sample_DNA_concentration
1.28
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.5
silicate_SiO3_10m
0.7
silicate_SiO3_5m
0.5
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.44
temperature_water_CTD_10m
3.39
temperature_water_CTD_5m
3.44
total_nitrogen_0-1m
14.8
total_nitrogen_10m
15
total_nitrogen_5m
15.4
total_phosphorus_0-1m
0.68
total_phosphorus_10m
0.69
total_phosphorus_5m
0.72
water_depth
63
wave_observation
3
weather_observation
2
wind_direction
26
wind_speed
6