marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702185
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
7.8
Submitter Id
P20107_273
air_pressure
NA
air_temperature
8
alkalinity_0-1m
1.57
alkalinity_10m
1.58
alkalinity_5m
1.58
ammonium_NH4_0-1m
0.09
ammonium_NH4_10m
0.07
ammonium_NH4_5m
0.16
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.94
chlorophyll_a_10m
3.98
chlorophyll_a_5m
3.47
cloud_observation
0
collection date
2019-04-01
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.85
dissolved_oxygen_O2_CTD_10m
9.85
dissolved_oxygen_O2_CTD_5m
9.87
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.58333
geographic location (longitude)
18.23333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.16
nitrite+nitrate_NO2+NO3_10m
0.18
nitrite+nitrate_NO2+NO3_5m
0.17
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.4
phosphate_PO4_10m
0.41
phosphate_PO4_5m
0.44
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.507
salinity_CTD_10m
6.514
salinity_CTD_5m
6.51
salinity_average
6.51
sample name
P20107_273
sample_DNA_concentration
23.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.63
silicate_SiO3_10m
14.59
silicate_SiO3_5m
15.29
station_ID
263732
station_name
BY31
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.55
temperature_water_CTD_10m
2.46
temperature_water_CTD_5m
2.5
total_nitrogen_0-1m
18.89
total_nitrogen_10m
19.14
total_nitrogen_5m
18.94
total_phosphorus_0-1m
0.8
total_phosphorus_10m
0.79
total_phosphorus_5m
0.77
water_depth
456
wave_observation
1
weather_observation
0
wind_direction
32
wind_speed
5