marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701701
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
12
Submitter Id
P20310_129
air_pressure
1019
air_temperature
2.9
alkalinity_0-1m
1.727
alkalinity_10m
1.724
alkalinity_5m
1.721
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.8
chlorophyll_a_10m
1.9
chlorophyll_a_5m
1.7
cloud_observation
3
collection date
2019-03-20
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9
dissolved_oxygen_O2_CTD_10m
9
dissolved_oxygen_O2_CTD_5m
9
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.31233
geographic location (longitude)
20.07635
humic_substance_0-1m
7.6
humic_substance_10m
7.6
humic_substance_5m
7.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
2.66
nitrate_NO3_10m
2.68
nitrate_NO3_5m
2.64
nitrite+nitrate_NO2+NO3_0-1m
2.75
nitrite+nitrate_NO2+NO3_10m
2.77
nitrite+nitrate_NO2+NO3_5m
2.73
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.09
origin
SMHI
pH_0-1m
8.1
pH_10m
8.09
pH_5m
8.11
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.63
phosphate_PO4_10m
0.62
phosphate_PO4_5m
0.62
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.42
salinity_CTD_10m
7.42
salinity_CTD_5m
7.42
salinity_average
7.42
sample name
P20310_129
sample_DNA_concentration
13.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.4
silicate_SiO3_10m
15.4
silicate_SiO3_5m
15.4
station_ID
263730
station_name
BY15
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.21
temperature_water_CTD_10m
3.22
temperature_water_CTD_5m
3.2
total_nitrogen_0-1m
20.5
total_nitrogen_10m
19.7
total_nitrogen_5m
19.8
total_phosphorus_0-1m
1.05
total_phosphorus_10m
0.94
total_phosphorus_5m
0.94
water_depth
240
wave_observation
3
weather_observation
1
wind_direction
23
wind_speed
10