marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701914
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20310_354
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.257
alkalinity_10m
1.275
alkalinity_5m
1.265
ammonium_NH4_0-1m
0.15
ammonium_NH4_10m
0.14
ammonium_NH4_5m
0.15
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.73
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
4
collection date
2019-08-06
conductivity_CTD_0-1m
724
conductivity_CTD_10m
701
conductivity_CTD_5m
707
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.21
dissolved_oxygen_O2_CTD_10m
6.73
dissolved_oxygen_O2_CTD_5m
6.76
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86367
geographic location (longitude)
18.26333
humic_substance_0-1m
10.4
humic_substance_10m
NA
humic_substance_5m
10.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.04
nitrate_NO3_10m
0.04
nitrate_NO3_5m
0.04
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.04
origin
UMU
pH_0-1m
8.4
pH_10m
8.2
pH_5m
8.3
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.865
salinity_CTD_10m
4.965
salinity_CTD_5m
4.908
salinity_average
4.91
sample name
P20310_354
sample_DNA_concentration
7.01
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
23.11
silicate_SiO3_10m
24.14
silicate_SiO3_5m
23.53
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
16.296
temperature_water_CTD_10m
14.129
temperature_water_CTD_5m
14.947
total_nitrogen_0-1m
19.92
total_nitrogen_10m
17.92
total_nitrogen_5m
20.06
total_phosphorus_0-1m
0.37
total_phosphorus_10m
0.32
total_phosphorus_5m
0.36
water_depth
83
wave_observation
2
weather_observation
1
wind_direction
8
wind_speed
4