marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701919
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_359
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.29
ammonium_NH4_10m
0.41
ammonium_NH4_5m
0.31
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
2
collection date
2019-09-17
conductivity_CTD_0-1m
602
conductivity_CTD_10m
615
conductivity_CTD_5m
603
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.59
dissolved_oxygen_O2_CTD_10m
6.52
dissolved_oxygen_O2_CTD_5m
6.57
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.49917
geographic location (longitude)
19.81917
humic_substance_0-1m
11.6
humic_substance_10m
NA
humic_substance_5m
11.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.34
nitrate_NO3_10m
0.38
nitrate_NO3_5m
0.34
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.06
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.06
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.11
phosphate_PO4_10m
0.12
phosphate_PO4_5m
0.11
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.307
salinity_CTD_10m
4.397
salinity_CTD_5m
4.311
salinity_average
4.34
sample name
P20310_359
sample_DNA_concentration
11.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
25.85
silicate_SiO3_10m
25.46
silicate_SiO3_5m
25.74
station_ID
264450
station_name
B3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
13.329
temperature_water_CTD_10m
13.402
temperature_water_CTD_5m
13.343
total_nitrogen_0-1m
16.92
total_nitrogen_10m
16.92
total_nitrogen_5m
16.99
total_phosphorus_0-1m
0.46
total_phosphorus_10m
0.43
total_phosphorus_5m
0.44
water_depth
23
wave_observation
1
weather_observation
1
wind_direction
31
wind_speed
3