marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701719
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_147
air_pressure
1020
air_temperature
14.6
alkalinity_0-1m
1.661
alkalinity_10m
1.658
alkalinity_5m
1.662
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.3
chlorophyll_a_10m
2.2
chlorophyll_a_5m
2.4
cloud_observation
9
collection date
2019-08-21
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.1
dissolved_oxygen_O2_CTD_10m
5.9
dissolved_oxygen_O2_CTD_5m
6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
56.37093
geographic location (longitude)
16.20202
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.1
pH_10m
7.94
pH_5m
8.06
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.22
phosphate_PO4_10m
0.3
phosphate_PO4_5m
0.22
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.09
salinity_CTD_10m
7.09
salinity_CTD_5m
7.09
salinity_average
7.09
sample name
P20310_147
sample_DNA_concentration
15.5
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
16.8
silicate_SiO3_10m
18.7
silicate_SiO3_5m
17.1
station_ID
263729
station_name
Ref_M1V1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
17.15
temperature_water_CTD_10m
16.84
temperature_water_CTD_5m
17.04
total_nitrogen_0-1m
23.3
total_nitrogen_10m
22.4
total_nitrogen_5m
22
total_phosphorus_0-1m
0.8
total_phosphorus_10m
0.81
total_phosphorus_5m
0.75
water_depth
23
wave_observation
9
weather_observation
9
wind_direction
28
wind_speed
8