Corynebacterium mustelae
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1795229 of study SRP052958.
ENA first public
2021-09-10
ENA last update
2021-09-10
External Id
SAMEA9873878
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2021-09-10T00:25:17Z
INSDC last update
2021-09-10T00:25:17Z
INSDC status
public
Submitter Id
SRR1795229_bin.1_metaWRAP_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metaWRAP v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2011-01-01
completeness score
58.07
completeness software
CheckM
contamination score
1.32
environment (biome)
Human oral metagenome
environment (feature)
Human oral cavity
environment (material)
Subgingival plaque
geographic location (country and/or sea)
USA
geographic location (latitude)
34.0722
geographic location (longitude)
-118.4441
investigation type
metagenome-assembled genome
isolation source
human oral metagenome
metagenomic source
human oral metagenome
project name
Oral microbiome associated with Periodontitis
sample derived from
SAMN03287612
sample name
SRR1795229_bin.1_metaWRAP_v1.1_MAG
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach