marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702224
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
3.5
Submitter Id
P20107_318
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.19
ammonium_NH4_10m
0.22
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-04-18
conductivity_CTD_0-1m
437
conductivity_CTD_10m
451
conductivity_CTD_5m
446
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.49983
geographic location (longitude)
19.81883
humic_substance_0-1m
14.5
humic_substance_10m
NA
humic_substance_5m
13.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.42
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.09
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.07
origin
UMU
pH_0-1m
8.2
pH_10m
8.1
pH_5m
8.2
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.08
phosphate_PO4_5m
0.07
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.104
salinity_CTD_10m
4.398
salinity_CTD_5m
4.184
salinity_average
4.23
sample name
P20107_318
sample_DNA_concentration
25.2
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
34.07
silicate_SiO3_10m
29.23
silicate_SiO3_5m
30.3
station_ID
264450
station_name
B3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.893
temperature_water_CTD_10m
1.873
temperature_water_CTD_5m
3.068
total_nitrogen_0-1m
16.99
total_nitrogen_10m
16.17
total_nitrogen_5m
16.56
total_phosphorus_0-1m
0.58
total_phosphorus_10m
0.51
total_phosphorus_5m
0.5
water_depth
24
wave_observation
1
weather_observation
0
wind_direction
35
wind_speed
1