marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701879
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
2.5
Submitter Id
P20310_319
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.14
ammonium_NH4_10m
0.22
ammonium_NH4_5m
0.15
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-05-13
conductivity_CTD_0-1m
408
conductivity_CTD_10m
517
conductivity_CTD_5m
409
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.01
dissolved_oxygen_O2_CTD_10m
8.35
dissolved_oxygen_O2_CTD_5m
8.87
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.4995
geographic location (longitude)
19.81933
humic_substance_0-1m
25
humic_substance_10m
NA
humic_substance_5m
25.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.54
nitrate_NO3_10m
1.64
nitrate_NO3_5m
0.46
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.13
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
7.9
pH_10m
7.8
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.08
phosphate_PO4_10m
0.25
phosphate_PO4_5m
0.08
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.617
salinity_CTD_10m
4.881
salinity_CTD_5m
3.629
salinity_average
4.04
sample name
P20310_319
sample_DNA_concentration
23.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
39.88
silicate_SiO3_10m
31.94
silicate_SiO3_5m
39.88
station_ID
264450
station_name
B3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.727
temperature_water_CTD_10m
3.213
temperature_water_CTD_5m
4.702
total_nitrogen_0-1m
18.28
total_nitrogen_10m
17.88
total_nitrogen_5m
18.13
total_phosphorus_0-1m
0.46
total_phosphorus_10m
0.55
total_phosphorus_5m
0.44
water_depth
23
wave_observation
2
weather_observation
1
wind_direction
29
wind_speed
8