marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701871
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
1.5
Submitter Id
P20310_311
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.23
ammonium_NH4_10m
NA
ammonium_NH4_5m
0.34
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-03-28
conductivity_CTD_0-1m
71
conductivity_CTD_10m
NA
conductivity_CTD_5m
249
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-5
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.8075
geographic location (longitude)
22.375
humic_substance_0-1m
33.3
humic_substance_10m
NA
humic_substance_5m
21.3
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
NA
nitrate_NO3_0-1m
7.66
nitrate_NO3_10m
NA
nitrate_NO3_5m
7.85
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.19
nitrite_NO2_10m
NA
nitrite_NO2_5m
0.08
origin
UMU
pH_0-1m
7.2
pH_10m
NA
pH_5m
7.4
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.14
phosphate_PO4_10m
NA
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2
salinity_CTD_10m
NA
salinity_CTD_5m
2.366
salinity_average
2.18
sample name
P20310_311
sample_DNA_concentration
19.3
sampled_depth
0-5
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
151
silicate_SiO3_10m
NA
silicate_SiO3_5m
60.88
station_ID
195357
station_name
RA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
0.873
temperature_water_CTD_10m
NA
temperature_water_CTD_5m
1.465
total_nitrogen_0-1m
20.28
total_nitrogen_10m
NA
total_nitrogen_5m
19.21
total_phosphorus_0-1m
0.19
total_phosphorus_10m
NA
total_phosphorus_5m
0.2
water_depth
8
wave_observation
NA
weather_observation
2
wind_direction
27
wind_speed
5