marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702055
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_137
air_pressure
1012
air_temperature
6.2
alkalinity_0-1m
1.628
alkalinity_10m
1.618
alkalinity_5m
1.625
ammonium_NH4_0-1m
0.65
ammonium_NH4_10m
0.6
ammonium_NH4_5m
0.59
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.3
cloud_observation
9
collection date
2019-12-05
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
56.37078
geographic location (longitude)
16.20198
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
9
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
1.47
nitrate_NO3_10m
1.43
nitrate_NO3_5m
1.46
nitrite+nitrate_NO2+NO3_0-1m
2.23
nitrite+nitrate_NO2+NO3_10m
2.2
nitrite+nitrate_NO2+NO3_5m
2.24
nitrite_NO2_0-1m
0.76
nitrite_NO2_10m
0.77
nitrite_NO2_5m
0.78
origin
SMHI
pH_0-1m
8.08
pH_10m
8.05
pH_5m
8.07
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.58
phosphate_PO4_10m
0.57
phosphate_PO4_5m
0.57
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.91
salinity_CTD_10m
6.91
salinity_CTD_5m
6.91
salinity_average
6.91
sample name
P20107_137
sample_DNA_concentration
1.21
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
17.3
silicate_SiO3_10m
17.4
silicate_SiO3_5m
17.3
station_ID
263729
station_name
Ref_M1V1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.59
temperature_water_CTD_10m
6.6
temperature_water_CTD_5m
6.6
total_nitrogen_0-1m
22
total_nitrogen_10m
20.5
total_nitrogen_5m
20.6
total_phosphorus_0-1m
0.88
total_phosphorus_10m
0.84
total_phosphorus_5m
0.92
water_depth
21
wave_observation
9
weather_observation
9
wind_direction
21
wind_speed
10