marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701953
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
2.5
Submitter Id
P20310_393
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.29
ammonium_NH4_10m
0.32
ammonium_NH4_5m
0.31
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2020-02-20
conductivity_CTD_0-1m
474
conductivity_CTD_10m
474
conductivity_CTD_5m
474
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.52517
geographic location (longitude)
19.80683
humic_substance_0-1m
13.1
humic_substance_10m
NA
humic_substance_5m
13.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
5.13
nitrate_NO3_10m
5.2
nitrate_NO3_5m
5.13
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.18
nitrite_NO2_10m
0.18
nitrite_NO2_5m
0.19
origin
UMU
pH_0-1m
7.93
pH_10m
7.92
pH_5m
7.92
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.56
phosphate_PO4_10m
0.57
phosphate_PO4_5m
0.56
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.777
salinity_CTD_10m
4.777
salinity_CTD_5m
4.78
salinity_average
4.78
sample name
P20310_393
sample_DNA_concentration
18.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
35.11
silicate_SiO3_10m
36.32
silicate_SiO3_5m
35.14
station_ID
263629
station_name
B7
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
0.932
temperature_water_CTD_10m
0.93
temperature_water_CTD_5m
0.931
total_nitrogen_0-1m
20.63
total_nitrogen_10m
20.7
total_nitrogen_5m
21.06
total_phosphorus_0-1m
0.74
total_phosphorus_10m
0.73
total_phosphorus_5m
0.76
water_depth
23
wave_observation
2
weather_observation
2
wind_direction
14
wind_speed
6