marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701875
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
1.5
Submitter Id
P20310_315
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.04
ammonium_NH4_10m
0.09
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-04-16
conductivity_CTD_0-1m
101
conductivity_CTD_10m
271
conductivity_CTD_5m
248
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.72867
geographic location (longitude)
22.44633
humic_substance_0-1m
29.7
humic_substance_10m
NA
humic_substance_5m
18.9
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
6.4
nitrate_NO3_10m
7.24
nitrate_NO3_5m
6.62
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.14
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.06
origin
UMU
pH_0-1m
7.3
pH_10m
7.5
pH_5m
7.6
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.07
phosphate_PO4_10m
0.11
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2
salinity_CTD_10m
2.641
salinity_CTD_5m
2.428
salinity_average
2.36
sample name
P20310_315
sample_DNA_concentration
17.9
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
96.13
silicate_SiO3_10m
52.34
silicate_SiO3_5m
50.2
station_ID
263856
station_name
RA2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
0.854
temperature_water_CTD_10m
0.906
temperature_water_CTD_5m
0.625
total_nitrogen_0-1m
20.2
total_nitrogen_10m
19.35
total_nitrogen_5m
18.99
total_phosphorus_0-1m
0.17
total_phosphorus_10m
0.22
total_phosphorus_5m
0.18
water_depth
12
wave_observation
NA
weather_observation
0
wind_direction
0
wind_speed
0