marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702209
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
5.5
Submitter Id
P20107_303
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.322
alkalinity_10m
1.324
alkalinity_5m
1.323
ammonium_NH4_0-1m
0.08
ammonium_NH4_10m
0.09
ammonium_NH4_5m
0.12
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-01-24
conductivity_CTD_0-1m
528
conductivity_CTD_10m
528
conductivity_CTD_5m
528
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86367
geographic location (longitude)
18.26383
humic_substance_0-1m
10.5
humic_substance_10m
NA
humic_substance_5m
10.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
4.43
nitrate_NO3_10m
4.48
nitrate_NO3_5m
4.39
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.04
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.54
phosphate_PO4_10m
0.54
phosphate_PO4_5m
0.55
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.273
salinity_CTD_10m
5.268
salinity_CTD_5m
5.27
salinity_average
5.27
sample name
P20107_303
sample_DNA_concentration
9.69
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
28.95
silicate_SiO3_10m
28.98
silicate_SiO3_5m
29.02
station_ID
263757
station_name
GA1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
1.476
temperature_water_CTD_10m
1.473
temperature_water_CTD_5m
1.476
total_nitrogen_0-1m
19.7
total_nitrogen_10m
19.06
total_nitrogen_5m
19.63
total_phosphorus_0-1m
0.74
total_phosphorus_10m
0.75
total_phosphorus_5m
0.75
water_depth
81
wave_observation
2
weather_observation
7
wind_direction
9
wind_speed
7