marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701685
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_113
air_pressure
985
air_temperature
6.2
alkalinity_0-1m
NA
alkalinity_10m
2.147
alkalinity_5m
2.095
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
0.75
ammonium_NH4_5m
0.86
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.2
chlorophyll_a_10m
2.2
chlorophyll_a_5m
2.5
cloud_observation
8
collection date
2019-12-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
6.6
dissolved_oxygen_O2_CTD_5m
6.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.9401
geographic location (longitude)
12.21197
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
3.55
nitrate_NO3_5m
3.44
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
3.72
nitrite+nitrate_NO2+NO3_5m
3.6
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
0.17
nitrite_NO2_5m
0.16
origin
SMHI
pH_0-1m
NA
pH_10m
8.1
pH_5m
8.1
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
0.48
phosphate_PO4_5m
0.45
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
NA
salinity_CTD_10m
25.62
salinity_CTD_5m
24.85
salinity_average
25.24
sample name
P20310_113
sample_DNA_concentration
1.95
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
5.3
silicate_SiO3_5m
5.5
station_ID
263903
station_name
N14_Falkenberg
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
NA
temperature_water_CTD_10m
6.89
temperature_water_CTD_5m
6.75
total_nitrogen_0-1m
NA
total_nitrogen_10m
16.2
total_nitrogen_5m
16.7
total_phosphorus_0-1m
NA
total_phosphorus_10m
0.81
total_phosphorus_5m
0.82
water_depth
32
wave_observation
3
weather_observation
2
wind_direction
16
wind_speed
9