marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701809
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_243
air_pressure
999
air_temperature
2.8
alkalinity_0-1m
2.327
alkalinity_10m
2.306
alkalinity_5m
2.314
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.4
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.4
cloud_observation
9
collection date
2019-01-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.8
dissolved_oxygen_O2_CTD_10m
6.8
dissolved_oxygen_O2_CTD_5m
6.8
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28427
geographic location (longitude)
10.50453
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
4.48
nitrate_NO3_10m
4.55
nitrate_NO3_5m
4.58
nitrite+nitrate_NO2+NO3_0-1m
4.54
nitrite+nitrate_NO2+NO3_10m
4.62
nitrite+nitrate_NO2+NO3_5m
4.64
nitrite_NO2_0-1m
0.06
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.06
origin
SMHI
pH_0-1m
8.11
pH_10m
8.12
pH_5m
8.12
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.39
phosphate_PO4_10m
0.39
phosphate_PO4_5m
0.38
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
33.92
salinity_CTD_10m
33.92
salinity_CTD_5m
33.92
salinity_average
33.92
sample name
P20310_243
sample_DNA_concentration
3.05
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.3
silicate_SiO3_10m
2.3
silicate_SiO3_5m
2.3
station_ID
264194
station_name
A17
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
6.71
temperature_water_CTD_10m
6.72
temperature_water_CTD_5m
6.72
total_nitrogen_0-1m
13.3
total_nitrogen_10m
11.8
total_nitrogen_5m
12.6
total_phosphorus_0-1m
0.59
total_phosphorus_10m
0.58
total_phosphorus_5m
0.6
water_depth
354
wave_observation
9
weather_observation
9
wind_direction
30
wind_speed
4