marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702139
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
10
Submitter Id
P20107_227
air_pressure
999
air_temperature
3.3
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.4
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.4
cloud_observation
2
collection date
2020-02-13
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.11612
geographic location (longitude)
17.6671
humic_substance_0-1m
8.1
humic_substance_10m
7.5
humic_substance_5m
7.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
3.5
nitrate_NO3_10m
3.48
nitrate_NO3_5m
3.37
nitrite+nitrate_NO2+NO3_0-1m
3.55
nitrite+nitrate_NO2+NO3_10m
3.53
nitrite+nitrate_NO2+NO3_5m
3.41
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.04
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.74
phosphate_PO4_10m
0.74
phosphate_PO4_5m
0.74
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.2
salinity_CTD_10m
7.2
salinity_CTD_5m
7.2
salinity_average
7.20
sample name
P20107_227
sample_DNA_concentration
7.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
18.4
silicate_SiO3_10m
18.5
silicate_SiO3_5m
18.4
station_ID
263979
station_name
BY38
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.57
temperature_water_CTD_10m
4.58
temperature_water_CTD_5m
4.58
total_nitrogen_0-1m
20.5
total_nitrogen_10m
21.2
total_nitrogen_5m
21
total_phosphorus_0-1m
1.07
total_phosphorus_10m
1.07
total_phosphorus_5m
1.05
water_depth
110
wave_observation
3
weather_observation
1
wind_direction
24
wind_speed
6