marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701690
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_118
air_pressure
1004
air_temperature
10.6
alkalinity_0-1m
2.282
alkalinity_10m
2.279
alkalinity_5m
2.282
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.28
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.1
chlorophyll_a_10m
1.1
chlorophyll_a_5m
1.2
cloud_observation
8
collection date
2019-10-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6
dissolved_oxygen_O2_CTD_10m
6
dissolved_oxygen_O2_CTD_5m
6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.2843
geographic location (longitude)
10.50418
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.15
pH_10m
8.15
pH_5m
8.15
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.08
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.07
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
33.28
salinity_CTD_10m
33.4
salinity_CTD_5m
33.28
salinity_average
33.32
sample name
P20310_118
sample_DNA_concentration
7.66
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
1
silicate_SiO3_10m
1
silicate_SiO3_5m
1.1
station_ID
264194
station_name
A17
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
12.15
temperature_water_CTD_10m
12.12
temperature_water_CTD_5m
12.15
total_nitrogen_0-1m
10
total_nitrogen_10m
8.7
total_nitrogen_5m
8.5
total_phosphorus_0-1m
0.43
total_phosphorus_10m
0.48
total_phosphorus_5m
0.43
water_depth
352
wave_observation
3
weather_observation
2
wind_direction
9
wind_speed
7