marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702109
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20107_191
air_pressure
1027
air_temperature
3.9
alkalinity_0-1m
2.03
alkalinity_10m
NA
alkalinity_5m
2.069
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.1
chlorophyll_a_10m
1.9
chlorophyll_a_5m
1.9
cloud_observation
8
collection date
2020-02-07
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.94068
geographic location (longitude)
12.2115
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
6.45
nitrate_NO3_10m
5.26
nitrate_NO3_5m
6.41
nitrite+nitrate_NO2+NO3_0-1m
6.84
nitrite+nitrate_NO2+NO3_10m
5.39
nitrite+nitrate_NO2+NO3_5m
6.72
nitrite_NO2_0-1m
0.39
nitrite_NO2_10m
0.13
nitrite_NO2_5m
0.31
origin
SMHI
pH_0-1m
8.12
pH_10m
8.11
pH_5m
8.11
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.53
phosphate_PO4_10m
0.54
phosphate_PO4_5m
0.55
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
22.74
salinity_CTD_10m
27.24
salinity_CTD_5m
24.32
salinity_average
24.77
sample name
P20107_191
sample_DNA_concentration
16.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.8
silicate_SiO3_10m
5.8
silicate_SiO3_5m
9.2
station_ID
263903
station_name
N14_Falkenberg
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.13
temperature_water_CTD_10m
5.8
temperature_water_CTD_5m
5.27
total_nitrogen_0-1m
20.6
total_nitrogen_10m
16.1
total_nitrogen_5m
20.1
total_phosphorus_0-1m
0.9
total_phosphorus_10m
0.86
total_phosphorus_5m
0.94
water_depth
31
wave_observation
2
weather_observation
4
wind_direction
14
wind_speed
7