marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701795
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_229
air_pressure
1011
air_temperature
4.7
alkalinity_0-1m
1.904
alkalinity_10m
2.093
alkalinity_5m
1.952
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.5
chlorophyll_a_5m
1.9
cloud_observation
0
collection date
2019-04-08
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
7.8
dissolved_oxygen_O2_CTD_5m
8
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.669
geographic location (longitude)
12.11037
humic_substance_0-1m
5.4
humic_substance_10m
4.7
humic_substance_5m
5.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.6
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.12
nitrite+nitrate_NO2+NO3_10m
0.65
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.2
pH_10m
8.13
pH_5m
8.21
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.16
phosphate_PO4_10m
0.12
phosphate_PO4_5m
0.14
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
15.28
salinity_CTD_10m
21.34
salinity_CTD_5m
16.5
salinity_average
17.71
sample name
P20310_229
sample_DNA_concentration
1.96
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
6.6
silicate_SiO3_10m
4.5
silicate_SiO3_5m
6.3
station_ID
264876
station_name
Anholt_E
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
6.33
temperature_water_CTD_10m
6.11
temperature_water_CTD_5m
6.54
total_nitrogen_0-1m
15.4
total_nitrogen_10m
14.7
total_nitrogen_5m
17.2
total_phosphorus_0-1m
0.58
total_phosphorus_10m
0.47
total_phosphorus_5m
0.55
water_depth
57
wave_observation
3
weather_observation
0
wind_direction
4
wind_speed
11.7