marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701676
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20310_104
air_pressure
1010
air_temperature
11.8
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.35
ammonium_NH4_10m
0.29
ammonium_NH4_5m
0.32
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-10-15
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7
dissolved_oxygen_O2_CTD_10m
7
dissolved_oxygen_O2_CTD_5m
7
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.55527
geographic location (longitude)
18.40022
humic_substance_0-1m
6.7
humic_substance_10m
6.7
humic_substance_5m
6.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.23
nitrate_NO3_10m
0.23
nitrate_NO3_5m
0.23
nitrite+nitrate_NO2+NO3_0-1m
0.35
nitrite+nitrate_NO2+NO3_10m
0.35
nitrite+nitrate_NO2+NO3_5m
0.35
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.12
nitrite_NO2_5m
0.12
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.24
phosphate_PO4_10m
0.23
phosphate_PO4_5m
0.23
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.44
salinity_CTD_10m
7.43
salinity_CTD_5m
7.44
salinity_average
7.44
sample name
P20310_104
sample_DNA_concentration
6.01
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11.8
silicate_SiO3_10m
11.8
silicate_SiO3_5m
11.8
station_ID
263953
station_name
BCS_III-10
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
13.15
temperature_water_CTD_10m
13.11
temperature_water_CTD_5m
13.12
total_nitrogen_0-1m
24.7
total_nitrogen_10m
22.8
total_nitrogen_5m
23.5
total_phosphorus_0-1m
0.62
total_phosphorus_10m
0.6
total_phosphorus_5m
0.61
water_depth
90
wave_observation
3
weather_observation
1
wind_direction
10
wind_speed
11