fermentation metagenome
collection_date
2021-04
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Homo sapiens
lat_lon
47.36 N 8.55 E
sequencing_depth
39447820
experiment
human1
Sample_description
TR1-30
Reactor
TR1
Treatment
VAN+CCUG59168
Day_of_Connection
30
Day_of_Treatment
1
Day_from_Inoculum
45
Phase
Treat
Treatment2
AB+E. faecium
Date
NA
Reactor_Treatment
TR1_VAN+CCUG59168
Reactor_F1_F2
VAN_CCUG59168_1_90
Model
Human
Model2
Human1
GeneCopyNumberperML
303000000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
13800000000
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
9600000000000
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
3.207
Galactose_mM
4.096
Succinat_mM
1.351
Lactat_mM
29.016
Formiat_mM
10.029
Acetat_mM
23.392
Propionat_mM
19.437
Isobutyrat_mM
2.571
Butyrat_mM
14.661
Isovalerat_mM
4.272
Valerat_mM
1.059
Total_SCFA_mM
113.091
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated