fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
64445750
experiment
chicken1
Sample_description
TR4-64
Reactor
TR4
Treatment
VAN
Day_of_Connection
64
Day_of_Treatment
48
Day_from_Inoculum
87
Phase
Treat
Treatment2
AB
Date
NA
Reactor_Treatment
TR4_VAN
Reactor_F1_F2
VAN_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
69400000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.418
Lactat_mM
3.808
Formiat_mM
0
Acetat_mM
41.394
Propionat_mM
17.022
Isobutyrat_mM
5.82
Butyrat_mM
2.23
Isovalerat_mM
4.591
Valerat_mM
0
Total_SCFA_mM
71.475
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated