marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702206
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_294
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
0.821
alkalinity_10m
0.821
alkalinity_5m
0.821
ammonium_NH4_0-1m
0.06
ammonium_NH4_10m
0.06
ammonium_NH4_5m
0.06
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-01-22
conductivity_CTD_0-1m
288
conductivity_CTD_10m
288
conductivity_CTD_5m
287
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
64.70883
geographic location (longitude)
22.06983
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
6
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
5.73
nitrate_NO3_10m
5.75
nitrate_NO3_5m
5.79
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
0.09
phosphate_PO4_5m
0.09
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.866
salinity_CTD_10m
2.862
salinity_CTD_5m
2.863
salinity_average
2.86
sample name
P20107_294
sample_DNA_concentration
4.69
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
39.88
silicate_SiO3_10m
39.88
silicate_SiO3_5m
40.23
station_ID
200698
station_name
A13
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
0.353
temperature_water_CTD_10m
0.4
temperature_water_CTD_5m
0.345
total_nitrogen_0-1m
18.71
total_nitrogen_10m
18.78
total_nitrogen_5m
18.21
total_phosphorus_0-1m
NA
total_phosphorus_10m
0.2
total_phosphorus_5m
0.2
water_depth
113
wave_observation
NA
weather_observation
1
wind_direction
26
wind_speed
5