marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110702077
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_159
air_pressure
1000
air_temperature
3.4
alkalinity_0-1m
1.721
alkalinity_10m
NA
alkalinity_5m
1.726
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.4
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.4
cloud_observation
8
collection date
2019-01-11
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
8.2
dissolved_oxygen_O2_CTD_5m
8.2
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.31232
geographic location (longitude)
20.07633
humic_substance_0-1m
8.3
humic_substance_10m
8.4
humic_substance_5m
8.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
2.44
nitrate_NO3_10m
2.44
nitrate_NO3_5m
2.41
nitrite+nitrate_NO2+NO3_0-1m
2.52
nitrite+nitrate_NO2+NO3_10m
2.52
nitrite+nitrate_NO2+NO3_5m
2.49
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8
pH_10m
8
pH_5m
8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.6
phosphate_PO4_10m
0.59
phosphate_PO4_5m
0.59
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.44
salinity_CTD_10m
7.44
salinity_CTD_5m
7.44
salinity_average
7.44
sample name
P20107_159
sample_DNA_concentration
17.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.1
silicate_SiO3_10m
14.2
silicate_SiO3_5m
14.1
station_ID
263730
station_name
BY15
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.03
temperature_water_CTD_10m
5.03
temperature_water_CTD_5m
5.03
total_nitrogen_0-1m
21
total_nitrogen_10m
20.8
total_nitrogen_5m
20.9
total_phosphorus_0-1m
0.99
total_phosphorus_10m
0.95
total_phosphorus_5m
0.96
water_depth
241
wave_observation
5
weather_observation
2
wind_direction
25
wind_speed
17