marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701897
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_337
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.11
ammonium_NH4_10m
0.11
ammonium_NH4_5m
0.1
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
4
collection date
2019-06-25
conductivity_CTD_0-1m
517
conductivity_CTD_10m
520
conductivity_CTD_5m
520
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.82
dissolved_oxygen_O2_CTD_10m
7.53
dissolved_oxygen_O2_CTD_5m
7.74
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.525
geographic location (longitude)
19.80817
humic_substance_0-1m
17.5
humic_substance_10m
NA
humic_substance_5m
16.7
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.12
nitrate_NO3_10m
0.11
nitrate_NO3_5m
0.11
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
8
pH_10m
7.8
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.926
salinity_CTD_10m
4.091
salinity_CTD_5m
3.99
salinity_average
4.00
sample name
P20310_337
sample_DNA_concentration
23.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
33.47
silicate_SiO3_10m
32.58
silicate_SiO3_5m
32.65
station_ID
263629
station_name
B7
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.723
temperature_water_CTD_10m
9.433
temperature_water_CTD_5m
10.367
total_nitrogen_0-1m
17.06
total_nitrogen_10m
15.92
total_nitrogen_5m
16.35
total_phosphorus_0-1m
0.53
total_phosphorus_10m
0.41
total_phosphorus_5m
0.41
water_depth
23
wave_observation
1
weather_observation
1
wind_direction
35
wind_speed
4