marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702175
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
10.5
Submitter Id
P20107_263
air_pressure
NA
air_temperature
-3
alkalinity_0-1m
1.59
alkalinity_10m
1.59
alkalinity_5m
1.59
ammonium_NH4_0-1m
0.14
ammonium_NH4_10m
0.09
ammonium_NH4_5m
0.1
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.29
chlorophyll_a_10m
2.17
chlorophyll_a_5m
2.24
cloud_observation
0
collection date
2019-03-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.72
dissolved_oxygen_O2_CTD_10m
9.66
dissolved_oxygen_O2_CTD_5m
9.66
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.58333
geographic location (longitude)
18.23333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
3.08
nitrite+nitrate_NO2+NO3_10m
3.16
nitrite+nitrate_NO2+NO3_5m
3.07
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.66
phosphate_PO4_10m
0.65
phosphate_PO4_5m
0.65
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.63
salinity_CTD_10m
6.629
salinity_CTD_5m
6.625
salinity_average
6.63
sample name
P20107_263
sample_DNA_concentration
4.71
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
20.99
silicate_SiO3_10m
20.99
silicate_SiO3_5m
21.09
station_ID
263732
station_name
BY31
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
1.88
temperature_water_CTD_10m
1.87
temperature_water_CTD_5m
1.88
total_nitrogen_0-1m
21.06
total_nitrogen_10m
20.73
total_nitrogen_5m
20.93
total_phosphorus_0-1m
0.94
total_phosphorus_10m
0.92
total_phosphorus_5m
0.92
water_depth
455
wave_observation
1
weather_observation
0
wind_direction
36
wind_speed
5