marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701699
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_127
air_pressure
983
air_temperature
3.3
alkalinity_0-1m
2.285
alkalinity_10m
2.3
alkalinity_5m
2.286
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.7
chlorophyll_a_10m
1.6
chlorophyll_a_5m
1.6
cloud_observation
9
collection date
2019-03-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.1
dissolved_oxygen_O2_CTD_10m
7.1
dissolved_oxygen_O2_CTD_5m
7.1
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28403
geographic location (longitude)
10.50365
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Gotland Basin
nitrate_NO3_0-1m
3.63
nitrate_NO3_10m
3.67
nitrate_NO3_5m
3.61
nitrite+nitrate_NO2+NO3_0-1m
3.74
nitrite+nitrate_NO2+NO3_10m
3.78
nitrite+nitrate_NO2+NO3_5m
3.72
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.11
origin
SMHI
pH_0-1m
8.15
pH_10m
8.15
pH_5m
8.14
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.34
phosphate_PO4_10m
0.33
phosphate_PO4_5m
0.33
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
33.37
salinity_CTD_10m
33.37
salinity_CTD_5m
33.37
salinity_average
33.37
sample name
P20310_127
sample_DNA_concentration
13.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.7
silicate_SiO3_10m
2.7
silicate_SiO3_5m
2.7
station_ID
264194
station_name
A17
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
5.53
temperature_water_CTD_10m
5.53
temperature_water_CTD_5m
5.53
total_nitrogen_0-1m
18
total_nitrogen_10m
15.8
total_nitrogen_5m
16.4
total_phosphorus_0-1m
0.73
total_phosphorus_10m
0.72
total_phosphorus_5m
0.71
water_depth
351
wave_observation
9
weather_observation
9
wind_direction
36
wind_speed
18