fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
55083318
experiment
chicken1
Sample_description
TR4-17
Reactor
TR4
Treatment
VAN
Day_of_Connection
17
Day_of_Treatment
1
Day_from_Inoculum
40
Phase
Treat
Treatment2
AB
Date
NA
Reactor_Treatment
TR4_VAN
Reactor_F1_F2
VAN_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
37400000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
1.401
Galactose_mM
1.045
Succinat_mM
4.792
Lactat_mM
0
Formiat_mM
0
Acetat_mM
79.243
Propionat_mM
17.005
Isobutyrat_mM
8.207
Butyrat_mM
28.479
Isovalerat_mM
6.182
Valerat_mM
4.307
Total_SCFA_mM
148.215
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated