marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701928
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_368
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.15
ammonium_NH4_10m
0.17
ammonium_NH4_5m
0.19
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-10-08
conductivity_CTD_0-1m
522
conductivity_CTD_10m
546
conductivity_CTD_5m
522
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.52483
geographic location (longitude)
19.808
humic_substance_0-1m
13.4
humic_substance_10m
NA
humic_substance_5m
13.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
0.73
nitrate_NO3_10m
0.77
nitrate_NO3_5m
0.71
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
8
pH_10m
8
pH_5m
8
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.14
phosphate_PO4_5m
0.13
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.23
salinity_CTD_10m
4.401
salinity_CTD_5m
4.233
salinity_average
4.29
sample name
P20310_368
sample_DNA_concentration
5.03
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
28.45
silicate_SiO3_10m
27.88
silicate_SiO3_5m
28.16
station_ID
263629
station_name
B7
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
8.37
temperature_water_CTD_10m
8.646
temperature_water_CTD_5m
8.381
total_nitrogen_0-1m
16.78
total_nitrogen_10m
15.99
total_nitrogen_5m
16.49
total_phosphorus_0-1m
0.5
total_phosphorus_10m
0.45
total_phosphorus_5m
0.48
water_depth
22
wave_observation
1
weather_observation
2
wind_direction
2
wind_speed
6