marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702125
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
1
Submitter Id
P20107_213
air_pressure
1003
air_temperature
1
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.25
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.47
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.1
chlorophyll_a_10m
0.2
chlorophyll_a_5m
0.5
cloud_observation
6
collection date
2020-02-03
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bornholm Basin and Han� Bay
nitrate_NO3_0-1m
11.34
nitrate_NO3_10m
7.37
nitrate_NO3_5m
8.42
nitrite+nitrate_NO2+NO3_0-1m
11.64
nitrite+nitrate_NO2+NO3_10m
7.48
nitrite+nitrate_NO2+NO3_5m
8.63
nitrite_NO2_0-1m
0.3
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.21
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.52
phosphate_PO4_10m
0.57
phosphate_PO4_5m
0.52
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
23.58
salinity_CTD_10m
30.95
salinity_CTD_5m
27.05
salinity_average
27.19
sample name
P20107_213
sample_DNA_concentration
0.28
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
27.9
silicate_SiO3_10m
8.5
silicate_SiO3_5m
12.3
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.48
temperature_water_CTD_10m
6.52
temperature_water_CTD_5m
5.73
total_nitrogen_0-1m
27.1
total_nitrogen_10m
16.4
total_nitrogen_5m
19.6
total_phosphorus_0-1m
0.9
total_phosphorus_10m
0.84
total_phosphorus_5m
0.82
water_depth
77
wave_observation
1
weather_observation
1
wind_direction
5
wind_speed
2