marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702053
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_135
air_pressure
1016
air_temperature
7.1
alkalinity_0-1m
2.277
alkalinity_10m
2.298
alkalinity_5m
2.286
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.3
chlorophyll_a_10m
2.4
chlorophyll_a_5m
1.3
cloud_observation
1
collection date
2019-04-08
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.4
dissolved_oxygen_O2_CTD_10m
7.4
dissolved_oxygen_O2_CTD_5m
7.4
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28418
geographic location (longitude)
10.50413
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.21
pH_10m
8.22
pH_5m
8.21
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.03
phosphate_PO4_5m
0.03
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
29.79
salinity_CTD_10m
31.77
salinity_CTD_5m
29.78
salinity_average
30.45
sample name
P20107_135
sample_DNA_concentration
1.64
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
1.7
silicate_SiO3_10m
1.2
silicate_SiO3_5m
1.7
station_ID
264194
station_name
A17
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.76
temperature_water_CTD_10m
6.63
temperature_water_CTD_5m
6.76
total_nitrogen_0-1m
11.6
total_nitrogen_10m
11.9
total_nitrogen_5m
13.6
total_phosphorus_0-1m
0.48
total_phosphorus_10m
0.64
total_phosphorus_5m
0.49
water_depth
342
wave_observation
3
weather_observation
1
wind_direction
1
wind_speed
11