marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701750
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20310_178
air_pressure
984
air_temperature
5.2
alkalinity_0-1m
2.034
alkalinity_10m
2.105
alkalinity_5m
2.031
ammonium_NH4_0-1m
0.23
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.21
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.5
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.7
cloud_observation
2
collection date
2019-03-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.9
dissolved_oxygen_O2_CTD_10m
7.8
dissolved_oxygen_O2_CTD_5m
7.9
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.94012
geographic location (longitude)
12.21203
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
1.97
nitrate_NO3_10m
0.99
nitrate_NO3_5m
1.9
nitrite+nitrate_NO2+NO3_0-1m
2.06
nitrite+nitrate_NO2+NO3_10m
1.07
nitrite+nitrate_NO2+NO3_5m
1.98
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
8.14
pH_10m
8.15
pH_5m
8.15
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.13
phosphate_PO4_10m
0.13
phosphate_PO4_5m
0.13
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
22.25
salinity_CTD_10m
23.81
salinity_CTD_5m
22.25
salinity_average
22.77
sample name
P20310_178
sample_DNA_concentration
33.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.3
silicate_SiO3_10m
2.5
silicate_SiO3_5m
3.2
station_ID
263903
station_name
N14_Falkenberg
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.4
temperature_water_CTD_10m
4.36
temperature_water_CTD_5m
4.37
total_nitrogen_0-1m
17.7
total_nitrogen_10m
17.2
total_nitrogen_5m
17.5
total_phosphorus_0-1m
0.57
total_phosphorus_10m
0.55
total_phosphorus_5m
0.61
water_depth
32
wave_observation
4
weather_observation
1
wind_direction
21
wind_speed
14