marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702107
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
10
Submitter Id
P20107_189
air_pressure
1004
air_temperature
8
alkalinity_0-1m
1.725
alkalinity_10m
1.718
alkalinity_5m
1.721
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.34
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1
chlorophyll_a_10m
1.3
chlorophyll_a_5m
1.3
cloud_observation
8
collection date
2019-05-10
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.2
dissolved_oxygen_O2_CTD_10m
9.2
dissolved_oxygen_O2_CTD_5m
9.2
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.31218
geographic location (longitude)
20.07625
humic_substance_0-1m
7.2
humic_substance_10m
7.6
humic_substance_5m
7.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.42
pH_10m
8.44
pH_5m
8.44
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.28
phosphate_PO4_10m
0.29
phosphate_PO4_5m
0.27
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.3
salinity_CTD_10m
7.3
salinity_CTD_5m
7.3
salinity_average
7.30
sample name
P20107_189
sample_DNA_concentration
10.9
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.3
silicate_SiO3_10m
14.2
silicate_SiO3_5m
14.2
station_ID
263730
station_name
BY15
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.67
temperature_water_CTD_10m
6.52
temperature_water_CTD_5m
6.53
total_nitrogen_0-1m
19.4
total_nitrogen_10m
NA
total_nitrogen_5m
18.8
total_phosphorus_0-1m
0.65
total_phosphorus_10m
NA
total_phosphorus_5m
0.65
water_depth
238
wave_observation
2
weather_observation
2
wind_direction
21
wind_speed
4