marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702133
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20107_221
air_pressure
1018
air_temperature
1
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.32
ammonium_NH4_10m
0.62
ammonium_NH4_5m
0.7
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.3
chlorophyll_a_10m
1.5
chlorophyll_a_5m
1.3
cloud_observation
1
collection date
2019-04-09
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.2
dissolved_oxygen_O2_CTD_10m
7.8
dissolved_oxygen_O2_CTD_5m
8.1
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
1.1
nitrate_NO3_10m
0.97
nitrate_NO3_5m
0.73
nitrite+nitrate_NO2+NO3_0-1m
1.15
nitrite+nitrate_NO2+NO3_10m
1.03
nitrite+nitrate_NO2+NO3_5m
0.78
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.05
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.3
phosphate_PO4_10m
0.06
phosphate_PO4_5m
0.08
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
26.36
salinity_CTD_10m
27.41
salinity_CTD_5m
26.38
salinity_average
26.72
sample name
P20107_221
sample_DNA_concentration
3.25
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
4
silicate_SiO3_10m
3.8
silicate_SiO3_5m
4.1
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.28
temperature_water_CTD_10m
6.23
temperature_water_CTD_5m
6.26
total_nitrogen_0-1m
14.1
total_nitrogen_10m
13.5
total_nitrogen_5m
NA
total_phosphorus_0-1m
0.49
total_phosphorus_10m
0.46
total_phosphorus_5m
NA
water_depth
78
wave_observation
2
weather_observation
1
wind_direction
36
wind_speed
5