marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702287
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
2.5
Submitter Id
P20107_381
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.84
ammonium_NH4_10m
0.36
ammonium_NH4_5m
0.55
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
2
collection date
2019-12-19
conductivity_CTD_0-1m
236
conductivity_CTD_10m
285
conductivity_CTD_5m
264
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.73017
geographic location (longitude)
22.44667
humic_substance_0-1m
49.9
humic_substance_10m
NA
humic_substance_5m
21
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
4.49
nitrate_NO3_10m
5.48
nitrate_NO3_5m
5.05
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.14
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.09
origin
UMU
pH_0-1m
7.5
pH_10m
7.8
pH_5m
7.7
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.04
phosphate_PO4_10m
0.08
phosphate_PO4_5m
0.05
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.288
salinity_CTD_10m
2.754
salinity_CTD_5m
2.57
salinity_average
2.54
sample name
P20107_381
sample_DNA_concentration
0.12
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
69.43
silicate_SiO3_10m
45.93
silicate_SiO3_5m
50.56
station_ID
263856
station_name
RA2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
0.772
temperature_water_CTD_10m
1.267
temperature_water_CTD_5m
0.893
total_nitrogen_0-1m
20.85
total_nitrogen_10m
20.2
total_nitrogen_5m
20.13
total_phosphorus_0-1m
0.21
total_phosphorus_10m
0.23
total_phosphorus_5m
0.2
water_depth
13
wave_observation
NA
weather_observation
1
wind_direction
27
wind_speed
4