marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701865
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
7.5
Submitter Id
P20310_305
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.213
alkalinity_10m
1.343
alkalinity_5m
1.345
ammonium_NH4_0-1m
0.09
ammonium_NH4_10m
0.06
ammonium_NH4_5m
0.12
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-02-11
conductivity_CTD_0-1m
446
conductivity_CTD_10m
527
conductivity_CTD_5m
468
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.65283
geographic location (longitude)
18.95233
humic_substance_0-1m
11.8
humic_substance_10m
NA
humic_substance_5m
10.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
4.97
nitrate_NO3_10m
4.2
nitrate_NO3_5m
4.2
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.04
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.4
phosphate_PO4_10m
0.49
phosphate_PO4_5m
0.49
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.626
salinity_CTD_10m
5.348
salinity_CTD_5m
4.831
salinity_average
4.94
sample name
P20310_305
sample_DNA_concentration
9.49
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
30.98
silicate_SiO3_10m
26.74
silicate_SiO3_5m
26.67
station_ID
190745
station_name
C3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
-0.077
temperature_water_CTD_10m
0.964
temperature_water_CTD_5m
0.193
total_nitrogen_0-1m
18.49
total_nitrogen_10m
17.92
total_nitrogen_5m
17.71
total_phosphorus_0-1m
0.61
total_phosphorus_10m
0.73
total_phosphorus_5m
0.71
water_depth
201
wave_observation
1
weather_observation
0
wind_direction
31
wind_speed
5