marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701695
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_123
air_pressure
989
air_temperature
0.4
alkalinity_0-1m
1.676
alkalinity_10m
1.66
alkalinity_5m
1.68
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.3
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.3
cloud_observation
7
collection date
2019-01-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.4
dissolved_oxygen_O2_CTD_10m
8.4
dissolved_oxygen_O2_CTD_5m
8.4
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.11715
geographic location (longitude)
17.6687
humic_substance_0-1m
8.3
humic_substance_10m
8.2
humic_substance_5m
8.4
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Arkona Basin and Southern �resund
nitrate_NO3_0-1m
2.56
nitrate_NO3_10m
2.5
nitrate_NO3_5m
2.53
nitrite+nitrate_NO2+NO3_0-1m
2.66
nitrite+nitrate_NO2+NO3_10m
2.6
nitrite+nitrate_NO2+NO3_5m
2.63
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.1
origin
SMHI
pH_0-1m
7.99
pH_10m
8.01
pH_5m
7.97
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.76
phosphate_PO4_10m
0.73
phosphate_PO4_5m
0.75
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.18
salinity_CTD_10m
7.18
salinity_CTD_5m
7.18
salinity_average
7.18
sample name
P20310_123
sample_DNA_concentration
26.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
18.4
silicate_SiO3_10m
18.3
silicate_SiO3_5m
18.4
station_ID
263979
station_name
BY38
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
4.21
temperature_water_CTD_10m
4.21
temperature_water_CTD_5m
4.21
total_nitrogen_0-1m
20.2
total_nitrogen_10m
19.4
total_nitrogen_5m
19.6
total_phosphorus_0-1m
1.09
total_phosphorus_10m
1.04
total_phosphorus_5m
1.04
water_depth
110
wave_observation
4
weather_observation
2
wind_direction
36
wind_speed
10