marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701807
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_241
air_pressure
1001
air_temperature
8
alkalinity_0-1m
2.276
alkalinity_10m
2.274
alkalinity_5m
2.273
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.7
chlorophyll_a_5m
0.6
cloud_observation
9
collection date
2020-01-07
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28413
geographic location (longitude)
10.5052
humic_substance_0-1m
3.6
humic_substance_10m
3.2
humic_substance_5m
3.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
4.15
nitrate_NO3_10m
4.3
nitrate_NO3_5m
4.35
nitrite+nitrate_NO2+NO3_0-1m
4.32
nitrite+nitrate_NO2+NO3_10m
4.46
nitrite+nitrate_NO2+NO3_5m
4.52
nitrite_NO2_0-1m
0.17
nitrite_NO2_10m
0.16
nitrite_NO2_5m
0.17
origin
SMHI
pH_0-1m
8.1
pH_10m
8.1
pH_5m
8.1
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.46
phosphate_PO4_10m
0.46
phosphate_PO4_5m
0.46
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
32.34
salinity_CTD_10m
32.35
salinity_CTD_5m
32.35
salinity_average
32.35
sample name
P20310_241
sample_DNA_concentration
0.17
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.9
silicate_SiO3_10m
3.9
silicate_SiO3_5m
3.9
station_ID
264194
station_name
A17
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
7.45
temperature_water_CTD_10m
7.45
temperature_water_CTD_5m
7.45
total_nitrogen_0-1m
12.7
total_nitrogen_10m
12.6
total_nitrogen_5m
12.5
total_phosphorus_0-1m
0.8
total_phosphorus_10m
0.73
total_phosphorus_5m
0.79
water_depth
351
wave_observation
9
weather_observation
9
wind_direction
17
wind_speed
18