marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701747
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_175
air_pressure
1000
air_temperature
11.8
alkalinity_0-1m
1.645
alkalinity_10m
1.656
alkalinity_5m
1.641
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.22
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.9
chlorophyll_a_10m
3
chlorophyll_a_5m
3
cloud_observation
9
collection date
2019-09-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.7
dissolved_oxygen_O2_CTD_10m
6.7
dissolved_oxygen_O2_CTD_5m
6.7
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.3121
geographic location (longitude)
20.0761
humic_substance_0-1m
6.7
humic_substance_10m
6.8
humic_substance_5m
6.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
SMHI
pH_0-1m
8.17
pH_10m
8.17
pH_5m
8.17
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.11
phosphate_PO4_10m
0.11
phosphate_PO4_5m
0.11
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.84
salinity_CTD_10m
6.86
salinity_CTD_5m
6.86
salinity_average
6.85
sample name
P20310_175
sample_DNA_concentration
15.8
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
12.3
silicate_SiO3_10m
12.3
silicate_SiO3_5m
12.3
station_ID
263730
station_name
BY15
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
14.87
temperature_water_CTD_10m
14.87
temperature_water_CTD_5m
14.88
total_nitrogen_0-1m
22
total_nitrogen_10m
21.5
total_nitrogen_5m
20.6
total_phosphorus_0-1m
0.6
total_phosphorus_10m
0.51
total_phosphorus_5m
0.53
water_depth
241
wave_observation
9
weather_observation
9
wind_direction
34
wind_speed
17