fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
55531906
experiment
chicken1
Sample_description
TR3-15
Reactor
TR3
Treatment
HV292.1
Day_of_Connection
15
Day_of_Treatment
-1
Day_from_Inoculum
38
Phase
Stab
Treatment2
E. coli
Date
NA
Reactor_Treatment
TR3_HV292.1
Reactor_F1_F2
HV292_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
48700000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
NA
Antibiotic
NA
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
0.65
Lactat_mM
0
Formiat_mM
0
Acetat_mM
99.568
Propionat_mM
14.76
Isobutyrat_mM
7.584
Butyrat_mM
33.721
Isovalerat_mM
6.467
Valerat_mM
8.363
Total_SCFA_mM
171.113
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated