marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702277
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_371
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.308
alkalinity_10m
1.312
alkalinity_5m
1.31
ammonium_NH4_0-1m
0.11
ammonium_NH4_10m
0.15
ammonium_NH4_5m
0.09
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-11-11
conductivity_CTD_0-1m
583
conductivity_CTD_10m
583
conductivity_CTD_5m
583
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.7
dissolved_oxygen_O2_CTD_10m
7.7
dissolved_oxygen_O2_CTD_5m
7.7
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.8635
geographic location (longitude)
18.26267
humic_substance_0-1m
9.5
humic_substance_10m
NA
humic_substance_5m
9.6
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
1.4
nitrate_NO3_10m
1.38
nitrate_NO3_5m
1.36
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.08
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.19
phosphate_PO4_10m
0.18
phosphate_PO4_5m
0.18
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.114
salinity_CTD_10m
5.115
salinity_CTD_5m
5.114
salinity_average
5.11
sample name
P20107_371
sample_DNA_concentration
5.67
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
22.89
silicate_SiO3_10m
23.11
silicate_SiO3_5m
23.04
station_ID
263757
station_name
GA1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.925
temperature_water_CTD_10m
5.916
temperature_water_CTD_5m
5.913
total_nitrogen_0-1m
16.56
total_nitrogen_10m
17.63
total_nitrogen_5m
16.99
total_phosphorus_0-1m
0.44
total_phosphorus_10m
0.42
total_phosphorus_5m
0.43
water_depth
83
wave_observation
0
weather_observation
7
wind_direction
3
wind_speed
5