marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702186
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
5.7
Submitter Id
P20107_274
air_pressure
NA
air_temperature
20
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.14
ammonium_NH4_10m
1.4
ammonium_NH4_5m
0.81
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.61
chlorophyll_a_10m
3.35
chlorophyll_a_5m
4.8
cloud_observation
0
collection date
2019-08-26
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
5.75
dissolved_oxygen_O2_CTD_10m
5.11
dissolved_oxygen_O2_CTD_5m
5.5
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.98367
geographic location (longitude)
17.72433
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.05
nitrite+nitrate_NO2+NO3_10m
0.41
nitrite+nitrate_NO2+NO3_5m
0.23
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.09
phosphate_PO4_10m
0.23
phosphate_PO4_5m
0.17
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.89
salinity_CTD_10m
5.89
salinity_CTD_5m
5.88
salinity_average
5.89
sample name
P20107_274
sample_DNA_concentration
11.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.69
silicate_SiO3_10m
6.31
silicate_SiO3_5m
4.91
station_ID
265221
station_name
H4
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
18.84
temperature_water_CTD_10m
18.26
temperature_water_CTD_5m
18.42
total_nitrogen_0-1m
26.12
total_nitrogen_10m
26.33
total_nitrogen_5m
26.14
total_phosphorus_0-1m
0.8
total_phosphorus_10m
0.88
total_phosphorus_5m
0.82
water_depth
30.4
wave_observation
1
weather_observation
0
wind_direction
16
wind_speed
4