marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701823
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
10
Submitter Id
P20310_257
air_pressure
NA
air_temperature
6
alkalinity_0-1m
1.58
alkalinity_10m
1.58
alkalinity_5m
1.58
ammonium_NH4_0-1m
0.09
ammonium_NH4_10m
0.11
ammonium_NH4_5m
0.13
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.89
chlorophyll_a_10m
2.65
chlorophyll_a_5m
2.65
cloud_observation
5
collection date
2019-10-08
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.02
dissolved_oxygen_O2_CTD_10m
6.86
dissolved_oxygen_O2_CTD_5m
6.87
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.80333
geographic location (longitude)
17.62367
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.04
nitrite+nitrate_NO2+NO3_10m
0.06
nitrite+nitrate_NO2+NO3_5m
0.04
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.22
phosphate_PO4_10m
0.21
phosphate_PO4_5m
0.21
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.612
salinity_CTD_10m
6.626
salinity_CTD_5m
6.613
salinity_average
6.62
sample name
P20310_257
sample_DNA_concentration
6.47
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.86
silicate_SiO3_10m
15.98
silicate_SiO3_5m
15.94
station_ID
263738
station_name
B1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.06
temperature_water_CTD_10m
10.12
temperature_water_CTD_5m
10.08
total_nitrogen_0-1m
20.38
total_nitrogen_10m
20.85
total_nitrogen_5m
20.92
total_phosphorus_0-1m
0.62
total_phosphorus_10m
0.63
total_phosphorus_5m
0.66
water_depth
40
wave_observation
1
weather_observation
1
wind_direction
27
wind_speed
3