marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702226
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
6.5
Submitter Id
P20107_320
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
0.858
alkalinity_10m
0.862
alkalinity_5m
0.859
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
NA
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
6
collection date
2019-05-13
conductivity_CTD_0-1m
317
conductivity_CTD_10m
317
conductivity_CTD_5m
317
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.59
dissolved_oxygen_O2_CTD_10m
9.38
dissolved_oxygen_O2_CTD_5m
9.32
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
64.70817
geographic location (longitude)
22.06617
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Kvarken
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
NA
phosphate_PO4_5m
NA
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.048
salinity_CTD_10m
3.05
salinity_CTD_5m
3.05
salinity_average
3.05
sample name
P20107_320
sample_DNA_concentration
6.64
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
NA
silicate_SiO3_5m
NA
station_ID
200698
station_name
A13
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
1.617
temperature_water_CTD_10m
1.583
temperature_water_CTD_5m
1.601
total_nitrogen_0-1m
19.63
total_nitrogen_10m
19.99
total_nitrogen_5m
19.99
total_phosphorus_0-1m
0.19
total_phosphorus_10m
0.2
total_phosphorus_5m
0.21
water_depth
120
wave_observation
2
weather_observation
1
wind_direction
27
wind_speed
5