marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701918
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_358
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.283
alkalinity_10m
1.293
alkalinity_5m
1.287
ammonium_NH4_0-1m
0.31
ammonium_NH4_10m
0.39
ammonium_NH4_5m
0.38
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.56
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
7
collection date
2019-09-16
conductivity_CTD_0-1m
681
conductivity_CTD_10m
673
conductivity_CTD_5m
677
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.74
dissolved_oxygen_O2_CTD_10m
6.21
dissolved_oxygen_O2_CTD_5m
6.49
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86317
geographic location (longitude)
18.26517
humic_substance_0-1m
9.6
humic_substance_10m
NA
humic_substance_5m
9.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.54
nitrate_NO3_10m
0.71
nitrate_NO3_5m
0.6
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.1
nitrite_NO2_5m
0.09
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.12
phosphate_PO4_10m
0.16
phosphate_PO4_5m
0.13
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.949
salinity_CTD_10m
5.091
salinity_CTD_5m
5.017
salinity_average
5.02
sample name
P20310_358
sample_DNA_concentration
12.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
23.32
silicate_SiO3_10m
23.93
silicate_SiO3_5m
23.5
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
13.079
temperature_water_CTD_10m
11.521
temperature_water_CTD_5m
12.291
total_nitrogen_0-1m
17.21
total_nitrogen_10m
17.13
total_nitrogen_5m
17.28
total_phosphorus_0-1m
0.44
total_phosphorus_10m
0.44
total_phosphorus_5m
0.46
water_depth
82
wave_observation
1
weather_observation
2
wind_direction
27
wind_speed
3