marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702052
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20107_134
air_pressure
1022
air_temperature
1.1
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.7
chlorophyll_a_10m
4.8
chlorophyll_a_5m
4.7
cloud_observation
3
collection date
2019-04-11
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.3
dissolved_oxygen_O2_CTD_10m
9.2
dissolved_oxygen_O2_CTD_5m
9.3
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.88183
geographic location (longitude)
20.32782
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
1.43
nitrate_NO3_10m
1.43
nitrate_NO3_5m
1.42
nitrite+nitrate_NO2+NO3_0-1m
1.5
nitrite+nitrate_NO2+NO3_10m
1.5
nitrite+nitrate_NO2+NO3_5m
1.49
nitrite_NO2_0-1m
0.07
nitrite_NO2_10m
0.07
nitrite_NO2_5m
0.07
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.58
phosphate_PO4_10m
0.58
phosphate_PO4_5m
0.58
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.19
salinity_CTD_10m
7.2
salinity_CTD_5m
7.2
salinity_average
7.20
sample name
P20107_134
sample_DNA_concentration
11.7
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.6
silicate_SiO3_10m
15.6
silicate_SiO3_5m
15.6
station_ID
263745
station_name
BY29
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
2.97
temperature_water_CTD_10m
2.97
temperature_water_CTD_5m
2.96
total_nitrogen_0-1m
24.8
total_nitrogen_10m
20.5
total_nitrogen_5m
20.6
total_phosphorus_0-1m
0.92
total_phosphorus_10m
0.9
total_phosphorus_5m
0.89
water_depth
176
wave_observation
3
weather_observation
1
wind_direction
2
wind_speed
8