marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702154
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
9
Submitter Id
P20107_242
air_pressure
981
air_temperature
4.6
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.6
chlorophyll_a_10m
1.8
chlorophyll_a_5m
2.6
cloud_observation
8
collection date
2019-12-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
54.9714
geographic location (longitude)
14.0992
humic_substance_0-1m
7.2
humic_substance_10m
7.6
humic_substance_5m
7.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
1.86
nitrate_NO3_10m
1.86
nitrate_NO3_5m
1.87
nitrite+nitrate_NO2+NO3_0-1m
1.94
nitrite+nitrate_NO2+NO3_10m
1.98
nitrite+nitrate_NO2+NO3_5m
1.95
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.12
nitrite_NO2_5m
0.08
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.47
phosphate_PO4_10m
0.47
phosphate_PO4_5m
0.47
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
8.35
salinity_CTD_10m
8.39
salinity_CTD_5m
8.36
salinity_average
8.37
sample name
P20107_242
sample_DNA_concentration
6.47
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11
silicate_SiO3_10m
11.2
silicate_SiO3_5m
11.1
station_ID
263725
station_name
BY2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
7.7
temperature_water_CTD_10m
7.65
temperature_water_CTD_5m
7.69
total_nitrogen_0-1m
20.8
total_nitrogen_10m
20.7
total_nitrogen_5m
20.8
total_phosphorus_0-1m
0.88
total_phosphorus_10m
0.8
total_phosphorus_5m
0.76
water_depth
47
wave_observation
3
weather_observation
2
wind_direction
19
wind_speed
10