marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702136
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
13
Submitter Id
P20107_224
air_pressure
1008
air_temperature
17.5
alkalinity_0-1m
2.285
alkalinity_10m
2.388
alkalinity_5m
2.369
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.3
chlorophyll_a_10m
0.3
chlorophyll_a_5m
NA
cloud_observation
2
collection date
2019-07-16
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
5.9
dissolved_oxygen_O2_CTD_10m
6.4
dissolved_oxygen_O2_CTD_5m
6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28433
geographic location (longitude)
10.50437
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.14
pH_10m
8.16
pH_5m
8.13
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.04
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
30.12
salinity_CTD_10m
33.34
salinity_CTD_5m
30.59
salinity_average
31.35
sample name
P20107_224
sample_DNA_concentration
11
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.1
silicate_SiO3_10m
0.5
silicate_SiO3_5m
0.2
station_ID
264194
station_name
A17
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
17.22
temperature_water_CTD_10m
13.37
temperature_water_CTD_5m
16.68
total_nitrogen_0-1m
10.3
total_nitrogen_10m
9.4
total_nitrogen_5m
9.1
total_phosphorus_0-1m
0.3
total_phosphorus_10m
0.33
total_phosphorus_5m
0.3
water_depth
351
wave_observation
3
weather_observation
1
wind_direction
28
wind_speed
7.3