marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702156
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20107_244
air_pressure
1024
air_temperature
7.5
alkalinity_0-1m
1.983
alkalinity_10m
1.993
alkalinity_5m
1.979
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.1
chlorophyll_a_10m
1.2
chlorophyll_a_5m
1.1
cloud_observation
3
collection date
2019-05-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.3
dissolved_oxygen_O2_CTD_10m
7.3
dissolved_oxygen_O2_CTD_5m
7.3
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.66872
geographic location (longitude)
12.11117
humic_substance_0-1m
5
humic_substance_10m
5
humic_substance_5m
5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.17
pH_10m
8.16
pH_5m
8.16
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.08
phosphate_PO4_10m
0.08
phosphate_PO4_5m
0.08
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
18.75
salinity_CTD_10m
18.77
salinity_CTD_5m
18.75
salinity_average
18.76
sample name
P20107_244
sample_DNA_concentration
2.44
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
3.9
silicate_SiO3_10m
3.9
silicate_SiO3_5m
3.9
station_ID
264876
station_name
Anholt_E
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
9.86
temperature_water_CTD_10m
9.78
temperature_water_CTD_5m
9.86
total_nitrogen_0-1m
15.9
total_nitrogen_10m
16.1
total_nitrogen_5m
16.2
total_phosphorus_0-1m
0.52
total_phosphorus_10m
0.5
total_phosphorus_5m
0.53
water_depth
64
wave_observation
4
weather_observation
1
wind_direction
32
wind_speed
9