fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
47415496
experiment
chicken1
Sample_description
TR5-13
Reactor
TR5
Treatment
VAN+CCUG59168
Day_of_Connection
13
Day_of_Treatment
-3
Day_from_Inoculum
36
Phase
Stab
Treatment2
AB+E. faecium
Date
NA
Reactor_Treatment
TR5_VAN+CCUG59168
Reactor_F1_F2
VAN+CCUG59168_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
39400000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
1.525
Lactat_mM
0
Formiat_mM
0
Acetat_mM
92.696
Propionat_mM
11.958
Isobutyrat_mM
9.009
Butyrat_mM
46.755
Isovalerat_mM
6.637
Valerat_mM
7.112
Total_SCFA_mM
175.692
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated