fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
41213616
experiment
chicken1
Sample_description
TR5-20
Reactor
TR5
Treatment
VAN+CCUG59168
Day_of_Connection
20
Day_of_Treatment
4
Day_from_Inoculum
43
Phase
Treat
Treatment2
AB+E. faecium
Date
NA
Reactor_Treatment
TR5_VAN+CCUG59168
Reactor_F1_F2
VAN+CCUG59168_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
25000000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
28473350000
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0.55
Glucose_mM
0.437
Galactose_mM
0
Succinat_mM
7.267
Lactat_mM
0
Formiat_mM
0
Acetat_mM
44.22
Propionat_mM
21.102
Isobutyrat_mM
0
Butyrat_mM
3.984
Isovalerat_mM
5.818
Valerat_mM
0
Total_SCFA_mM
82.391
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated