marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702117
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_205
air_pressure
1007
air_temperature
5.2
alkalinity_0-1m
1.716
alkalinity_10m
1.712
alkalinity_5m
1.715
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
4.8
chlorophyll_a_10m
4.4
chlorophyll_a_5m
4.7
cloud_observation
0
collection date
2019-04-07
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
9.3
dissolved_oxygen_O2_CTD_10m
9.3
dissolved_oxygen_O2_CTD_5m
9.3
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.24993
geographic location (longitude)
15.9837
humic_substance_0-1m
6.9
humic_substance_10m
6.9
humic_substance_5m
6.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.23
pH_10m
8.24
pH_5m
8.22
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.38
phosphate_PO4_10m
0.36
phosphate_PO4_5m
0.38
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.62
salinity_CTD_10m
7.64
salinity_CTD_5m
7.62
salinity_average
7.63
sample name
P20107_205
sample_DNA_concentration
10.1
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.9
silicate_SiO3_10m
9.5
silicate_SiO3_5m
9.9
station_ID
263728
station_name
BY5
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.73
temperature_water_CTD_10m
4.82
temperature_water_CTD_5m
4.72
total_nitrogen_0-1m
21.5
total_nitrogen_10m
19.3
total_nitrogen_5m
18.1
total_phosphorus_0-1m
0.83
total_phosphorus_10m
0.77
total_phosphorus_5m
0.82
water_depth
89
wave_observation
2
weather_observation
0
wind_direction
5
wind_speed
5