marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701792
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
5
Submitter Id
P20310_226
air_pressure
999
air_temperature
3
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.08
ammonium_NH4_10m
0.78
ammonium_NH4_5m
1.05
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.9
chlorophyll_a_10m
1.4
chlorophyll_a_5m
0.8
cloud_observation
7
collection date
2019-11-04
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.3
dissolved_oxygen_O2_CTD_10m
5.9
dissolved_oxygen_O2_CTD_5m
6.2
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bornholm Basin and Han� Bay
nitrate_NO3_0-1m
2.32
nitrate_NO3_10m
1.34
nitrate_NO3_5m
2.3
nitrite+nitrate_NO2+NO3_0-1m
2.61
nitrite+nitrate_NO2+NO3_10m
1.64
nitrite+nitrate_NO2+NO3_5m
2.59
nitrite_NO2_0-1m
0.29
nitrite_NO2_10m
0.3
nitrite_NO2_5m
0.29
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.27
phosphate_PO4_10m
0.27
phosphate_PO4_5m
0.28
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
26.59
salinity_CTD_10m
30.47
salinity_CTD_5m
26.77
salinity_average
27.94
sample name
P20310_226
sample_DNA_concentration
9.74
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
6.9
silicate_SiO3_10m
4
silicate_SiO3_5m
6.7
station_ID
263628
station_name
Slaggo
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.38
temperature_water_CTD_10m
11.74
temperature_water_CTD_5m
10.47
total_nitrogen_0-1m
17.4
total_nitrogen_10m
14.7
total_nitrogen_5m
16.7
total_phosphorus_0-1m
0.68
total_phosphorus_10m
0.63
total_phosphorus_5m
0.64
water_depth
77
wave_observation
2
weather_observation
2
wind_direction
5
wind_speed
9