marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:35Z
ENA-LAST-UPDATE
2023-10-06T16:50:35Z
External Id
SAMEA110701939
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:35Z
INSDC last update
2023-10-06T16:50:35Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_379
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.296
alkalinity_10m
1.3
alkalinity_5m
1.297
ammonium_NH4_0-1m
0.09
ammonium_NH4_10m
0.11
ammonium_NH4_5m
0.09
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-12-11
conductivity_CTD_0-1m
551
conductivity_CTD_10m
552
conductivity_CTD_5m
549
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.76
dissolved_oxygen_O2_CTD_10m
6.99
dissolved_oxygen_O2_CTD_5m
7.42
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.86333
geographic location (longitude)
18.26567
humic_substance_0-1m
10.2
humic_substance_10m
NA
humic_substance_5m
10.2
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Sea
nitrate_NO3_0-1m
2.49
nitrate_NO3_10m
2.52
nitrate_NO3_5m
2.51
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.04
nitrite_NO2_10m
0.04
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.32
phosphate_PO4_10m
0.33
phosphate_PO4_5m
0.33
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.117
salinity_CTD_10m
5.12
salinity_CTD_5m
5.108
salinity_average
5.12
sample name
P20310_379
sample_DNA_concentration
14.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
26.85
silicate_SiO3_10m
26.7
silicate_SiO3_5m
26.74
station_ID
263757
station_name
GA1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
3.884
temperature_water_CTD_10m
3.896
temperature_water_CTD_5m
3.836
total_nitrogen_0-1m
17.92
total_nitrogen_10m
19.35
total_nitrogen_5m
18.92
total_phosphorus_0-1m
0.54
total_phosphorus_10m
0.58
total_phosphorus_5m
0.55
water_depth
80
wave_observation
1
weather_observation
1
wind_direction
19
wind_speed
6