marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110701944
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
4
Submitter Id
P20310_384
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.21
ammonium_NH4_10m
0.22
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2020-01-18
conductivity_CTD_0-1m
498
conductivity_CTD_10m
500
conductivity_CTD_5m
499
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.49967
geographic location (longitude)
19.81833
humic_substance_0-1m
12.2
humic_substance_10m
NA
humic_substance_5m
12.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
4.6
nitrate_NO3_10m
4.57
nitrate_NO3_5m
4.53
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.13
nitrite_NO2_5m
0.12
origin
UMU
pH_0-1m
7.93
pH_10m
7.94
pH_5m
7.94
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.55
phosphate_PO4_10m
0.57
phosphate_PO4_5m
0.55
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.975
salinity_CTD_10m
5.002
salinity_CTD_5m
4.988
salinity_average
4.99
sample name
P20310_384
sample_DNA_concentration
10.3
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
33.97
silicate_SiO3_10m
34.57
silicate_SiO3_5m
34.18
station_ID
264450
station_name
B3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
1.338
temperature_water_CTD_10m
1.319
temperature_water_CTD_5m
1.325
total_nitrogen_0-1m
18.63
total_nitrogen_10m
18.63
total_nitrogen_5m
18.78
total_phosphorus_0-1m
0.71
total_phosphorus_10m
0.73
total_phosphorus_5m
0.75
water_depth
25
wave_observation
2
weather_observation
5
wind_direction
4
wind_speed
5