marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702128
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_216
air_pressure
1007
air_temperature
6.8
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.7
chlorophyll_a_10m
1.6
chlorophyll_a_5m
2.8
cloud_observation
8
collection date
2020-01-09
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
54.97225
geographic location (longitude)
14.0985
humic_substance_0-1m
7.3
humic_substance_10m
7.7
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Northern Gotland Basin
nitrate_NO3_0-1m
2.03
nitrate_NO3_10m
2.11
nitrate_NO3_5m
2.07
nitrite+nitrate_NO2+NO3_0-1m
2.39
nitrite+nitrate_NO2+NO3_10m
2.48
nitrite+nitrate_NO2+NO3_5m
2.43
nitrite_NO2_0-1m
0.36
nitrite_NO2_10m
0.37
nitrite_NO2_5m
0.36
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.53
phosphate_PO4_10m
0.53
phosphate_PO4_5m
0.53
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
8.9
salinity_CTD_10m
8.99
salinity_CTD_5m
8.89
salinity_average
8.93
sample name
P20107_216
sample_DNA_concentration
15.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
12.1
silicate_SiO3_10m
12.2
silicate_SiO3_5m
12.1
station_ID
263725
station_name
BY2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.39
temperature_water_CTD_10m
5.4
temperature_water_CTD_5m
5.38
total_nitrogen_0-1m
21.3
total_nitrogen_10m
22.6
total_nitrogen_5m
22.6
total_phosphorus_0-1m
0.87
total_phosphorus_10m
0.95
total_phosphorus_5m
0.88
water_depth
48
wave_observation
3
weather_observation
2
wind_direction
18
wind_speed
9