marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702223
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_317
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.324
alkalinity_10m
1.344
alkalinity_5m
1.327
ammonium_NH4_0-1m
0.08
ammonium_NH4_10m
0.13
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
0
collection date
2019-04-17
conductivity_CTD_0-1m
524
conductivity_CTD_10m
528
conductivity_CTD_5m
525
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.8635
geographic location (longitude)
18.26333
humic_substance_0-1m
10.5
humic_substance_10m
NA
humic_substance_5m
10.5
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
2.71
nitrate_NO3_10m
3.63
nitrate_NO3_5m
3.34
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.14
nitrite_NO2_10m
0.16
nitrite_NO2_5m
0.14
origin
UMU
pH_0-1m
8
pH_10m
7.9
pH_5m
7.9
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.36
phosphate_PO4_10m
0.45
phosphate_PO4_5m
0.41
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.236
salinity_CTD_10m
5.289
salinity_CTD_5m
5.26
salinity_average
5.26
sample name
P20107_317
sample_DNA_concentration
9.91
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
29.94
silicate_SiO3_10m
30.37
silicate_SiO3_5m
29.98
station_ID
263757
station_name
GA1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
1.457
temperature_water_CTD_10m
1.345
temperature_water_CTD_5m
1.331
total_nitrogen_0-1m
17.78
total_nitrogen_10m
19.28
total_nitrogen_5m
17.99
total_phosphorus_0-1m
0.62
total_phosphorus_10m
0.69
total_phosphorus_5m
0.65
water_depth
83
wave_observation
0
weather_observation
0
wind_direction
0
wind_speed
0