marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702132
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_220
air_pressure
994
air_temperature
4.9
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.3
chlorophyll_a_10m
2.2
chlorophyll_a_5m
1.9
cloud_observation
9
collection date
2019-01-12
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.5
dissolved_oxygen_O2_CTD_10m
8.5
dissolved_oxygen_O2_CTD_5m
8.5
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
54.9712
geographic location (longitude)
14.09897
humic_substance_0-1m
7.3
humic_substance_10m
7.2
humic_substance_5m
7.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
2.13
nitrate_NO3_10m
2.1
nitrate_NO3_5m
2.15
nitrite+nitrate_NO2+NO3_0-1m
2.25
nitrite+nitrate_NO2+NO3_10m
2.21
nitrite+nitrate_NO2+NO3_5m
2.25
nitrite_NO2_0-1m
0.12
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.1
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.58
phosphate_PO4_10m
0.57
phosphate_PO4_5m
0.57
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
8.73
salinity_CTD_10m
8.74
salinity_CTD_5m
8.73
salinity_average
8.73
sample name
P20107_220
sample_DNA_concentration
11.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
13.2
silicate_SiO3_10m
13.2
silicate_SiO3_5m
13.2
station_ID
263725
station_name
BY2
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.7
temperature_water_CTD_10m
4.72
temperature_water_CTD_5m
4.7
total_nitrogen_0-1m
20.2
total_nitrogen_10m
22
total_nitrogen_5m
19.4
total_phosphorus_0-1m
1.07
total_phosphorus_10m
1.16
total_phosphorus_5m
1.02
water_depth
46
wave_observation
9
weather_observation
9
wind_direction
27
wind_speed
11