fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
44784192
experiment
chicken1
Sample_description
TR2-19
Reactor
TR2
Treatment
CTX
Day_of_Connection
19
Day_of_Treatment
3
Day_from_Inoculum
42
Phase
Treat
Treatment2
AB
Date
NA
Reactor_Treatment
TR2_CTX
Reactor_F1_F2
CTX_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
42000000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
NA
Antibiotic_mg.L
20
Antibiotic
CTX
Lactose_mM
0
Glucose_mM
0
Galactose_mM
0
Succinat_mM
2.973
Lactat_mM
0
Formiat_mM
0
Acetat_mM
90.991
Propionat_mM
7.423
Isobutyrat_mM
0
Butyrat_mM
44.651
Isovalerat_mM
2.036
Valerat_mM
0.036
Total_SCFA_mM
148.11
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated