marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702042
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
7
Submitter Id
P20107_124
air_pressure
1007
air_temperature
16.3
alkalinity_0-1m
2.191
alkalinity_10m
2.217
alkalinity_5m
2.195
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.9
chlorophyll_a_10m
0.8
chlorophyll_a_5m
1
cloud_observation
1
collection date
2019-08-20
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
5.8
dissolved_oxygen_O2_CTD_10m
5.8
dissolved_oxygen_O2_CTD_5m
5.8
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.28423
geographic location (longitude)
10.50432
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.17
pH_10m
8.12
pH_5m
8.17
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.07
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
29.62
salinity_CTD_10m
29.63
salinity_CTD_5m
29.61
salinity_average
29.62
sample name
P20107_124
sample_DNA_concentration
23.6
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
0.5
silicate_SiO3_10m
0.8
silicate_SiO3_5m
0.5
station_ID
264194
station_name
A17
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
16.76
temperature_water_CTD_10m
16.76
temperature_water_CTD_5m
16.77
total_nitrogen_0-1m
12.9
total_nitrogen_10m
10.8
total_nitrogen_5m
10.7
total_phosphorus_0-1m
0.48
total_phosphorus_10m
0.42
total_phosphorus_5m
0.44
water_depth
349
wave_observation
4
weather_observation
1
wind_direction
23
wind_speed
12