marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702124
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_212
air_pressure
1016
air_temperature
5.7
alkalinity_0-1m
1.688
alkalinity_10m
1.693
alkalinity_5m
1.686
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.8
chlorophyll_a_10m
0.8
chlorophyll_a_5m
0.8
cloud_observation
9
collection date
2020-02-08
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25042
geographic location (longitude)
15.98375
humic_substance_0-1m
7.8
humic_substance_10m
7.9
humic_substance_5m
7.8
ice_observation
9
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
2.88
nitrate_NO3_10m
2.87
nitrate_NO3_5m
2.82
nitrite+nitrate_NO2+NO3_0-1m
2.96
nitrite+nitrate_NO2+NO3_10m
2.95
nitrite+nitrate_NO2+NO3_5m
2.91
nitrite_NO2_0-1m
0.08
nitrite_NO2_10m
0.08
nitrite_NO2_5m
0.09
origin
SMHI
pH_0-1m
8.09
pH_10m
8.09
pH_5m
8.1
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.66
phosphate_PO4_10m
0.62
phosphate_PO4_5m
0.62
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.76
salinity_CTD_10m
7.76
salinity_CTD_5m
7.76
salinity_average
7.76
sample name
P20107_212
sample_DNA_concentration
4.07
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.4
silicate_SiO3_10m
14.4
silicate_SiO3_5m
14.4
station_ID
263728
station_name
BY5
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
5.69
temperature_water_CTD_10m
5.69
temperature_water_CTD_5m
5.69
total_nitrogen_0-1m
19.2
total_nitrogen_10m
18.7
total_nitrogen_5m
18.5
total_phosphorus_0-1m
1.1
total_phosphorus_10m
1
total_phosphorus_5m
0.98
water_depth
91
wave_observation
9
weather_observation
9
wind_direction
19
wind_speed
11