marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701758
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_186
air_pressure
976
air_temperature
4.6
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.3
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.3
cloud_observation
9
collection date
2020-02-11
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.88248
geographic location (longitude)
20.32897
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
4.33
nitrate_NO3_10m
4.22
nitrate_NO3_5m
4.26
nitrite+nitrate_NO2+NO3_0-1m
4.42
nitrite+nitrate_NO2+NO3_10m
4.31
nitrite+nitrate_NO2+NO3_5m
4.35
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.09
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.6
phosphate_PO4_10m
0.6
phosphate_PO4_5m
0.6
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.21
salinity_CTD_10m
7.21
salinity_CTD_5m
7.21
salinity_average
7.21
sample name
P20310_186
sample_DNA_concentration
6.15
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
15.2
silicate_SiO3_10m
15.3
silicate_SiO3_5m
15.3
station_ID
263745
station_name
BY29
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
5.09
temperature_water_CTD_10m
5.09
temperature_water_CTD_5m
5.09
total_nitrogen_0-1m
21.8
total_nitrogen_10m
21.7
total_nitrogen_5m
22
total_phosphorus_0-1m
0.86
total_phosphorus_10m
0.9
total_phosphorus_5m
0.87
water_depth
167
wave_observation
9
weather_observation
9
wind_direction
21
wind_speed
12