marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702082
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_164
air_pressure
1023
air_temperature
11.5
alkalinity_0-1m
1.675
alkalinity_10m
1.672
alkalinity_5m
1.676
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.3
chlorophyll_a_10m
2.1
chlorophyll_a_5m
2
cloud_observation
2
collection date
2019-09-14
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.8
dissolved_oxygen_O2_CTD_10m
6.8
dissolved_oxygen_O2_CTD_5m
6.8
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
56.37092
geographic location (longitude)
16.20218
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Eastern Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.08
pH_10m
8.04
pH_5m
8.06
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.27
phosphate_PO4_10m
0.31
phosphate_PO4_5m
0.29
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.41
salinity_CTD_10m
7.39
salinity_CTD_5m
7.4
salinity_average
7.40
sample name
P20107_164
sample_DNA_concentration
14.5
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
13.8
silicate_SiO3_10m
14.4
silicate_SiO3_5m
14.2
station_ID
263729
station_name
Ref_M1V1
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
14.66
temperature_water_CTD_10m
14.15
temperature_water_CTD_5m
14.4
total_nitrogen_0-1m
23.9
total_nitrogen_10m
22.6
total_nitrogen_5m
25.3
total_phosphorus_0-1m
0.89
total_phosphorus_10m
0.79
total_phosphorus_5m
0.9
water_depth
21
wave_observation
2
weather_observation
1
wind_direction
27
wind_speed
8