marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110702068
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_150
air_pressure
1010
air_temperature
14.3
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.2
chlorophyll_a_10m
1.9
chlorophyll_a_5m
1.5
cloud_observation
9
collection date
2019-06-11
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.9
dissolved_oxygen_O2_CTD_10m
8.1
dissolved_oxygen_O2_CTD_5m
8.1
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.55533
geographic location (longitude)
18.40023
humic_substance_0-1m
7
humic_substance_10m
7.3
humic_substance_5m
7.1
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.03
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.18
phosphate_PO4_10m
0.16
phosphate_PO4_5m
0.17
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.44
salinity_CTD_10m
7.44
salinity_CTD_5m
7.43
salinity_average
7.44
sample name
P20107_150
sample_DNA_concentration
12
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11.3
silicate_SiO3_10m
10.9
silicate_SiO3_5m
11.1
station_ID
263953
station_name
BCS_III-10
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
12.92
temperature_water_CTD_10m
11.39
temperature_water_CTD_5m
11.8
total_nitrogen_0-1m
21.5
total_nitrogen_10m
21
total_nitrogen_5m
21.9
total_phosphorus_0-1m
0.68
total_phosphorus_10m
0.71
total_phosphorus_5m
0.71
water_depth
90
wave_observation
9
weather_observation
9
wind_direction
6
wind_speed
9