fermentation metagenome
collection_date
2020-08
env_broad_scale
ENVO:00002264
env_local_scale
ENVO:00002003
env_medium
ENVO:00002003
geo_loc_name
Switzerland: Zuerich
host
Gallus gallus domesticus
lat_lon
47.36 N 8.55 E
sequencing_depth
45318724
experiment
chicken1
Sample_description
TR5-17
Reactor
TR5
Treatment
VAN+CCUG59168
Day_of_Connection
17
Day_of_Treatment
1
Day_from_Inoculum
40
Phase
Treat
Treatment2
AB+E. faecium
Date
NA
Reactor_Treatment
TR5_VAN+CCUG59168
Reactor_F1_F2
VAN_CCUG59168_1
Model
Chicken
Model2
Chicken1
GeneCopyNumberperML
26000000000
HV292.1_Copy_Number_permL
NA
CCUG59168_Copy_Number_permL
NA
CTX_Copy_Number_permL
NA
VAN_Copy_Number_permL
41564875000
Antibiotic_mg.L
90
Antibiotic
VAN
Lactose_mM
0
Glucose_mM
1.584
Galactose_mM
1.135
Succinat_mM
6.021
Lactat_mM
0
Formiat_mM
0
Acetat_mM
77.564
Propionat_mM
16.918
Isobutyrat_mM
7.59
Butyrat_mM
29.69
Isovalerat_mM
5.858
Valerat_mM
3.135
Total_SCFA_mM
146.776
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated