marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702115
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_203
air_pressure
1007
air_temperature
11.7
alkalinity_0-1m
1.978
alkalinity_10m
2.115
alkalinity_5m
2.018
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
2.6
chlorophyll_a_10m
0.9
chlorophyll_a_5m
2
cloud_observation
9
collection date
2019-10-17
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.7
dissolved_oxygen_O2_CTD_10m
6.2
dissolved_oxygen_O2_CTD_5m
6.6
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
56.94
geographic location (longitude)
12.21203
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.93
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.31
nitrite+nitrate_NO2+NO3_0-1m
0.98
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.34
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.03
nitrite_NO2_5m
0.03
origin
SMHI
pH_0-1m
8.18
pH_10m
8.13
pH_5m
8.18
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.15
phosphate_PO4_10m
0.18
phosphate_PO4_5m
0.14
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
19.44
salinity_CTD_10m
24.38
salinity_CTD_5m
20.27
salinity_average
21.36
sample name
P20107_203
sample_DNA_concentration
5.01
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
2.2
silicate_SiO3_10m
1.2
silicate_SiO3_5m
1.7
station_ID
263903
station_name
N14_Falkenberg
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
11.76
temperature_water_CTD_10m
12.5
temperature_water_CTD_5m
11.85
total_nitrogen_0-1m
17.6
total_nitrogen_10m
13.4
total_nitrogen_5m
15.6
total_phosphorus_0-1m
0.66
total_phosphorus_10m
0.61
total_phosphorus_5m
0.6
water_depth
32
wave_observation
9
weather_observation
9
wind_direction
21
wind_speed
6