marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701724
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_152
air_pressure
967
air_temperature
5.9
alkalinity_0-1m
1.683
alkalinity_10m
1.682
alkalinity_5m
1.675
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.4
chlorophyll_a_10m
0.4
chlorophyll_a_5m
0.5
cloud_observation
7
collection date
2020-02-10
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.3124
geographic location (longitude)
20.08198
humic_substance_0-1m
7.8
humic_substance_10m
7.7
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
3.47
nitrate_NO3_10m
3.33
nitrate_NO3_5m
3.32
nitrite+nitrate_NO2+NO3_0-1m
3.56
nitrite+nitrate_NO2+NO3_10m
3.42
nitrite+nitrate_NO2+NO3_5m
3.41
nitrite_NO2_0-1m
0.09
nitrite_NO2_10m
0.09
nitrite_NO2_5m
0.09
origin
SMHI
pH_0-1m
NA
pH_10m
8.05
pH_5m
8.04
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.72
phosphate_PO4_10m
0.71
phosphate_PO4_5m
0.72
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
NA
salinity_CTD_10m
7.33
salinity_CTD_5m
7.33
salinity_average
7.33
sample name
P20310_152
sample_DNA_concentration
0.15
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
17.1
silicate_SiO3_10m
17.1
silicate_SiO3_5m
17.1
station_ID
263730
station_name
BY15
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
NA
temperature_water_CTD_10m
4.85
temperature_water_CTD_5m
4.85
total_nitrogen_0-1m
20.5
total_nitrogen_10m
19.8
total_nitrogen_5m
20.8
total_phosphorus_0-1m
1.02
total_phosphorus_10m
1.01
total_phosphorus_5m
1.06
water_depth
240
wave_observation
5
weather_observation
2
wind_direction
20
wind_speed
16