marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701867
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20310_307
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.37
ammonium_NH4_10m
0.11
ammonium_NH4_5m
0.13
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
1
collection date
2019-02-15
conductivity_CTD_0-1m
348
conductivity_CTD_10m
482
conductivity_CTD_5m
407
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
63.4965
geographic location (longitude)
19.821
humic_substance_0-1m
18.5
humic_substance_10m
NA
humic_substance_5m
13.2
ice_observation
6
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
7.04
nitrate_NO3_10m
5.25
nitrate_NO3_5m
5.86
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.1
nitrite_NO2_10m
0.06
nitrite_NO2_5m
0.08
origin
UMU
pH_0-1m
7.8
pH_10m
7.9
pH_5m
7.9
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.25
phosphate_PO4_10m
0.5
phosphate_PO4_5m
0.35
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
3.498
salinity_CTD_10m
4.933
salinity_CTD_5m
4.177
salinity_average
4.20
sample name
P20310_307
sample_DNA_concentration
21.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
49.13
silicate_SiO3_10m
28.77
silicate_SiO3_5m
33.68
station_ID
264450
station_name
B3
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
0.387
temperature_water_CTD_10m
0.491
temperature_water_CTD_5m
0.105
total_nitrogen_0-1m
20.49
total_nitrogen_10m
19.21
total_nitrogen_5m
20.42
total_phosphorus_0-1m
0.38
total_phosphorus_10m
0.67
total_phosphorus_5m
0.5
water_depth
27
wave_observation
NA
weather_observation
1
wind_direction
27
wind_speed
7