marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702099
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
11
Submitter Id
P20107_181
air_pressure
1009
air_temperature
7
alkalinity_0-1m
1.695
alkalinity_10m
1.698
alkalinity_5m
1.707
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1
chlorophyll_a_10m
1.4
chlorophyll_a_5m
1.4
cloud_observation
2
collection date
2019-05-11
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
8.7
dissolved_oxygen_O2_CTD_10m
8.7
dissolved_oxygen_O2_CTD_5m
8.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
55.25002
geographic location (longitude)
15.98423
humic_substance_0-1m
6.7
humic_substance_10m
6.8
humic_substance_5m
6.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
8.22
pH_10m
8.23
pH_5m
8.23
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.37
phosphate_PO4_10m
0.37
phosphate_PO4_5m
0.37
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
7.5
salinity_CTD_10m
7.5
salinity_CTD_5m
7.5
salinity_average
7.50
sample name
P20107_181
sample_DNA_concentration
3.32
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
11.5
silicate_SiO3_10m
11.3
silicate_SiO3_5m
11.4
station_ID
263728
station_name
BY5
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
7.61
temperature_water_CTD_10m
7.28
temperature_water_CTD_5m
7.49
total_nitrogen_0-1m
19
total_nitrogen_10m
19.1
total_nitrogen_5m
19
total_phosphorus_0-1m
0.66
total_phosphorus_10m
0.7
total_phosphorus_5m
0.69
water_depth
90
wave_observation
3
weather_observation
1
wind_direction
30
wind_speed
4