marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110701852
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
11.2
Submitter Id
P20310_286
air_pressure
NA
air_temperature
10
alkalinity_0-1m
1.56
alkalinity_10m
1.56
alkalinity_5m
1.56
ammonium_NH4_0-1m
0.83
ammonium_NH4_10m
0.78
ammonium_NH4_5m
0.77
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
1.8
chlorophyll_a_10m
1.67
chlorophyll_a_5m
1.62
cloud_observation
3
collection date
2019-10-22
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
6.83
dissolved_oxygen_O2_CTD_10m
6.73
dissolved_oxygen_O2_CTD_5m
6.73
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
58.80333
geographic location (longitude)
17.62367
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Western Gotland Basin
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
0.39
nitrite+nitrate_NO2+NO3_10m
0.38
nitrite+nitrate_NO2+NO3_5m
0.37
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.31
phosphate_PO4_10m
0.29
phosphate_PO4_5m
0.29
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.467
salinity_CTD_10m
6.467
salinity_CTD_5m
6.468
salinity_average
6.47
sample name
P20310_286
sample_DNA_concentration
2.54
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
16.32
silicate_SiO3_10m
16.27
silicate_SiO3_5m
16.3
station_ID
263738
station_name
B1
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
10.14
temperature_water_CTD_10m
10.15
temperature_water_CTD_5m
10.15
total_nitrogen_0-1m
21.14
total_nitrogen_10m
20.5
total_nitrogen_5m
20.39
total_phosphorus_0-1m
0.67
total_phosphorus_10m
0.63
total_phosphorus_5m
0.62
water_depth
39.5
wave_observation
1
weather_observation
1
wind_direction
25
wind_speed
8