marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:36Z
ENA-LAST-UPDATE
2023-10-06T16:50:36Z
External Id
SAMEA110702283
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:36Z
INSDC last update
2023-10-06T16:50:36Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_377
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.253
alkalinity_10m
1.253
alkalinity_5m
1.251
ammonium_NH4_0-1m
0.1
ammonium_NH4_10m
0.09
ammonium_NH4_5m
0.11
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
4
collection date
2019-12-10
conductivity_CTD_0-1m
517
conductivity_CTD_10m
517
conductivity_CTD_5m
517
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.94
dissolved_oxygen_O2_CTD_10m
8.14
dissolved_oxygen_O2_CTD_5m
8.28
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.6525
geographic location (longitude)
18.9525
humic_substance_0-1m
10.9
humic_substance_10m
NA
humic_substance_5m
10.9
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
2.99
nitrate_NO3_10m
3.02
nitrate_NO3_5m
3.03
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.05
origin
UMU
pH_0-1m
7.9
pH_10m
7.9
pH_5m
8
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.33
phosphate_PO4_10m
0.33
phosphate_PO4_5m
0.33
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
4.898
salinity_CTD_10m
4.9
salinity_CTD_5m
4.9
salinity_average
4.90
sample name
P20107_377
sample_DNA_concentration
14.4
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
28.48
silicate_SiO3_10m
28.52
silicate_SiO3_5m
28.66
station_ID
190745
station_name
C3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
3.099
temperature_water_CTD_10m
3.06
temperature_water_CTD_5m
3.056
total_nitrogen_0-1m
16.85
total_nitrogen_10m
16.92
total_nitrogen_5m
18.06
total_phosphorus_0-1m
0.53
total_phosphorus_10m
0.54
total_phosphorus_5m
0.55
water_depth
197
wave_observation
3
weather_observation
1
wind_direction
35
wind_speed
9