marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701739
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_167
air_pressure
1009
air_temperature
17.4
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.2
ammonium_NH4_10m
0.2
ammonium_NH4_5m
0.2
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.5
chlorophyll_a_10m
3.8
chlorophyll_a_5m
2.6
cloud_observation
2
collection date
2019-07-18
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.5
dissolved_oxygen_O2_CTD_10m
7.2
dissolved_oxygen_O2_CTD_5m
7.6
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
57.1171
geographic location (longitude)
17.6686
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Kattegatt
nitrate_NO3_0-1m
0.1
nitrate_NO3_10m
0.1
nitrate_NO3_5m
0.1
nitrite+nitrate_NO2+NO3_0-1m
0.1
nitrite+nitrate_NO2+NO3_10m
0.1
nitrite+nitrate_NO2+NO3_5m
0.1
nitrite_NO2_0-1m
0.02
nitrite_NO2_10m
0.02
nitrite_NO2_5m
0.02
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.11
phosphate_PO4_10m
0.09
phosphate_PO4_5m
0.1
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
6.57
salinity_CTD_10m
6.8
salinity_CTD_5m
6.62
salinity_average
6.66
sample name
P20310_167
sample_DNA_concentration
16
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
14.9
silicate_SiO3_10m
13.6
silicate_SiO3_5m
14.9
station_ID
263979
station_name
BY38
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
17.25
temperature_water_CTD_10m
15.59
temperature_water_CTD_5m
17.05
total_nitrogen_0-1m
27.3
total_nitrogen_10m
24.2
total_nitrogen_5m
28.2
total_phosphorus_0-1m
0.61
total_phosphorus_10m
0.59
total_phosphorus_5m
0.76
water_depth
111
wave_observation
2
weather_observation
1
wind_direction
14
wind_speed
3