marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702235
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20107_329
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.303
alkalinity_10m
1.304
alkalinity_5m
1.301
ammonium_NH4_0-1m
NA
ammonium_NH4_10m
NA
ammonium_NH4_5m
NA
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
7.01
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
3
collection date
2019-05-15
conductivity_CTD_0-1m
560
conductivity_CTD_10m
559
conductivity_CTD_5m
560
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
10.28
dissolved_oxygen_O2_CTD_10m
10.14
dissolved_oxygen_O2_CTD_5m
10.32
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
62.65217
geographic location (longitude)
18.95133
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
NA
nitrate_NO3_10m
NA
nitrate_NO3_5m
NA
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
NA
nitrite_NO2_10m
NA
nitrite_NO2_5m
NA
origin
UMU
pH_0-1m
8.5
pH_10m
8.4
pH_5m
8.5
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
NA
phosphate_PO4_10m
NA
phosphate_PO4_5m
NA
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.139
salinity_CTD_10m
5.139
salinity_CTD_5m
5.138
salinity_average
5.14
sample name
P20107_329
sample_DNA_concentration
8.53
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
NA
silicate_SiO3_10m
NA
silicate_SiO3_5m
NA
station_ID
190745
station_name
C3
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
4.325
temperature_water_CTD_10m
4.234
temperature_water_CTD_5m
4.304
total_nitrogen_0-1m
17.28
total_nitrogen_10m
17.85
total_nitrogen_5m
18.71
total_phosphorus_0-1m
0.5
total_phosphorus_10m
0.51
total_phosphorus_5m
0.54
water_depth
195
wave_observation
1
weather_observation
1
wind_direction
27
wind_speed
6