marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:39Z
ENA-LAST-UPDATE
2023-10-06T16:50:39Z
External Id
SAMEA110701935
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:39Z
INSDC last update
2023-10-06T16:50:39Z
INSDC status
public
Secchi_depth
NA
Submitter Id
P20310_375
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
0.22
ammonium_NH4_10m
0.21
ammonium_NH4_5m
0.21
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
NA
chlorophyll_a_10m
NA
chlorophyll_a_5m
NA
cloud_observation
8
collection date
2019-11-13
conductivity_CTD_0-1m
241
conductivity_CTD_10m
242
conductivity_CTD_5m
241
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
65.731
geographic location (longitude)
22.44583
humic_substance_0-1m
19.7
humic_substance_10m
NA
humic_substance_5m
19.6
ice_observation
8
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
3.91
nitrate_NO3_10m
4.01
nitrate_NO3_5m
3.91
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.11
nitrite_NO2_10m
0.11
nitrite_NO2_5m
0.11
origin
UMU
pH_0-1m
7.7
pH_10m
7.7
pH_5m
7.7
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.05
phosphate_PO4_10m
0.05
phosphate_PO4_5m
0.04
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
2.412
salinity_CTD_10m
2.42
salinity_CTD_5m
2.412
salinity_average
2.41
sample name
P20310_375
sample_DNA_concentration
0.19
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
49.13
silicate_SiO3_10m
49.49
silicate_SiO3_5m
49.85
station_ID
263856
station_name
RA2
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
-0.096
temperature_water_CTD_10m
-0.087
temperature_water_CTD_5m
-0.116
total_nitrogen_0-1m
18.78
total_nitrogen_10m
18.21
total_nitrogen_5m
17.92
total_phosphorus_0-1m
0.25
total_phosphorus_10m
0.23
total_phosphorus_5m
0.24
water_depth
12
wave_observation
NA
weather_observation
4
wind_direction
12
wind_speed
4