marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:37Z
ENA-LAST-UPDATE
2023-10-06T16:50:37Z
External Id
SAMEA110702051
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:37Z
INSDC last update
2023-10-06T16:50:37Z
INSDC status
public
Secchi_depth
6
Submitter Id
P20107_133
air_pressure
1015
air_temperature
7
alkalinity_0-1m
NA
alkalinity_10m
NA
alkalinity_5m
NA
ammonium_NH4_0-1m
1.1
ammonium_NH4_10m
0.39
ammonium_NH4_5m
1.01
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
0.5
chlorophyll_a_10m
0.2
chlorophyll_a_5m
0.5
cloud_observation
8
collection date
2020-01-07
conductivity_CTD_0-1m
NA
conductivity_CTD_10m
NA
conductivity_CTD_5m
NA
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
NA
dissolved_oxygen_O2_CTD_10m
NA
dissolved_oxygen_O2_CTD_5m
NA
environmental medium
saline water (ENVO:00002010)
geographic location (country and/or sea)
North Sea
geographic location (latitude)
58.25833
geographic location (longitude)
11.43333
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Skagerrak
nitrate_NO3_0-1m
6.18
nitrate_NO3_10m
5.6
nitrate_NO3_5m
6.05
nitrite+nitrate_NO2+NO3_0-1m
6.37
nitrite+nitrate_NO2+NO3_10m
5.81
nitrite+nitrate_NO2+NO3_5m
6.24
nitrite_NO2_0-1m
0.19
nitrite_NO2_10m
0.21
nitrite_NO2_5m
0.19
origin
SMHI
pH_0-1m
NA
pH_10m
NA
pH_5m
NA
pcr primers
V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR)
phosphate_PO4_0-1m
0.51
phosphate_PO4_10m
0.55
phosphate_PO4_5m
0.51
project name
PRJEB55296
replicate
2
salinity_CTD_0-1m
27.74
salinity_CTD_10m
30.74
salinity_CTD_5m
28.43
salinity_average
28.97
sample name
P20107_133
sample_DNA_concentration
0.13
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
9.3
silicate_SiO3_10m
6.6
silicate_SiO3_5m
8.9
station_ID
263628
station_name
Slaggo
target gene
18S rRNA
target subfragment
18S-V4
temperature_water_CTD_0-1m
6.11
temperature_water_CTD_10m
7.34
temperature_water_CTD_5m
6.25
total_nitrogen_0-1m
18.3
total_nitrogen_10m
16.6
total_nitrogen_5m
18.1
total_phosphorus_0-1m
0.83
total_phosphorus_10m
0.77
total_phosphorus_5m
0.82
water_depth
78
wave_observation
2
weather_observation
2
wind_direction
23
wind_speed
8