marine plankton metagenome
marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
ENA-FIRST-PUBLIC
2023-10-06T16:50:38Z
ENA-LAST-UPDATE
2023-10-06T16:50:38Z
External Id
SAMEA110701915
INSDC center name
SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
INSDC first public
2023-10-06T16:50:38Z
INSDC last update
2023-10-06T16:50:38Z
INSDC status
public
Secchi_depth
4.5
Submitter Id
P20310_355
air_pressure
NA
air_temperature
NA
alkalinity_0-1m
1.333
alkalinity_10m
1.337
alkalinity_5m
1.335
ammonium_NH4_0-1m
0.17
ammonium_NH4_10m
0.18
ammonium_NH4_5m
0.16
broad-scale environmental context
marine pelagic biome (ENVO:01000023)
chlorophyll_a_0-1m
3.57
chlorophyll_a_10m
3.53
chlorophyll_a_5m
3.69
cloud_observation
3
collection date
2019-08-07
conductivity_CTD_0-1m
792
conductivity_CTD_10m
760
conductivity_CTD_5m
780
data_access
http://sharkweb.smhi.se. http://sharkdata.se
depth
0-10
dissolved_oxygen_O2_CTD_0-1m
7.27
dissolved_oxygen_O2_CTD_10m
6.79
dissolved_oxygen_O2_CTD_5m
6.87
environmental medium
brackish water (ENVO:00002019)
geographic location (country and/or sea)
Baltic Sea
geographic location (latitude)
61.18317
geographic location (longitude)
18.22967
humic_substance_0-1m
NA
humic_substance_10m
NA
humic_substance_5m
NA
ice_observation
0
local environmental context
neritic epipelagic zome biome (ENVO:01000042)
location_basin
Baltic Sea - Bothnian Bay
nitrate_NO3_0-1m
0.08
nitrate_NO3_10m
0.04
nitrate_NO3_5m
0.06
nitrite+nitrate_NO2+NO3_0-1m
NA
nitrite+nitrate_NO2+NO3_10m
NA
nitrite+nitrate_NO2+NO3_5m
NA
nitrite_NO2_0-1m
0.05
nitrite_NO2_10m
0.05
nitrite_NO2_5m
0.04
origin
UMU
pH_0-1m
8.4
pH_10m
8.3
pH_5m
8.4
pcr primers
341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)
phosphate_PO4_0-1m
0.03
phosphate_PO4_10m
0.03
phosphate_PO4_5m
0.03
project name
PRJEB55296
replicate
1
salinity_CTD_0-1m
5.252
salinity_CTD_10m
5.26
salinity_CTD_5m
5.241
salinity_average
5.25
sample name
P20310_355
sample_DNA_concentration
2.81
sampled_depth
0-10
sampled_volume
500
scientific_name
marine plankton metagenome
sequencing method
Sequencing by synthesis (Illumina)
silicate_SiO3_0-1m
23.36
silicate_SiO3_10m
23.46
silicate_SiO3_5m
23.5
station_ID
264064
station_name
SR3/C24
target gene
16S rRNA
target subfragment
16S-V3/4
temperature_water_CTD_0-1m
17.101
temperature_water_CTD_10m
15.279
temperature_water_CTD_5m
16.544
total_nitrogen_0-1m
23.85
total_nitrogen_10m
21.35
total_nitrogen_5m
22.49
total_phosphorus_0-1m
0.49
total_phosphorus_10m
0.38
total_phosphorus_5m
0.4
water_depth
72
wave_observation
2
weather_observation
1
wind_direction
11
wind_speed
4