Metagenome-assembled genome: SRR4116664_bin.55_CONCOCT_v1.1_MAG
uncultured Bacteroidales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4116664 of study SRP084038.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14081018
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:03Z
INSDC last update
2023-01-03T00:33:03Z
INSDC status
public
Submitter Id
SRR4116664_bin.55_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
98.39
completeness software
CheckM
contamination score
0.81
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
Investigating the association among IL-17, a high-fat diet(HFD), and the gut microbiota
sample derived from
SAMN05717610
sample name
SRR4116664_bin.55_CONCOCT_v1.1_MAG
scientific_name
uncultured Bacteroidales bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach