Metagenome-assembled genome: ERR982847_bin.38_CONCOCT_v1.1_MAG
uncultured Roseburia sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR982847 of study ERP011540.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14080720
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:01Z
INSDC last update
2023-01-03T00:33:01Z
INSDC status
public
Submitter Id
ERR982847_bin.38_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2011-01-01
completeness score
97.04
completeness software
CheckM
contamination score
1.93
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
Denmark
geographic location (latitude)
55.676098
geographic location (longitude)
12.568337
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
We used C57BL/6JBomTac (BL6) and 129S6/SvEvTac (Sv129) mice, known as obesity prone and obesity resistant, respectively, to dissociate changes in the gut microbiota associated with HF feeding from those associated with obesity. Using HiSeq-based whole genome sequencing we identified taxonomic and functional differences in the gut microbiota of the two mouse strains fed regular low fat or HF diets. HF feeding rather than obesity development led to distinct changes in the microbiota.
sample derived from
SAMEA3504086
sample name
ERR982847_bin.38_CONCOCT_v1.1_MAG
scientific_name
uncultured Roseburia sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach