metagenome
Short Rotation, Precrop Pasture, Rhizosphere, Replicate VI
collection_date
2018
depth
NA
elev
57 m
env_broad_scale
Organism
env_local_scale
Organism
env_medium
Rhizosphere
geo_loc_name
Uruguay
lat_lon
33.15544 S 54.29281 W
host_common_name
Oat
host_latin_name
Avena sativa L.
animal_gut
NA
sequencing_platform
Illumina MiSeq
dna_extraction_method
FastDNA SPIN kit for soil
dna_extraction_amount
0.5g
agrochem_addition
faltante
al_sat
No colectado
al_sat_meth
NA
altitude
NA
annual_season_precpt
Annual mean: 1379 ± 58 mm (no seasonality within the year)
annual_season_temp
Annual Mean maximum: 23.0 ± 0.1°C, annual mean minimum: 11.3 ± 0.6 °C (January (warmest): 23.0 ± 0.5°C/ July (coldest): 10.9 ± 0.9 °C)
crop_rotation
Trifolium pratense L./Avena sativa L./Sorghum bicolor L./ Triticum aestivum L./Glycine max L.
cur_land_use
small grains
cur_vegetation
oat
cur_vegetation_meth
NA
drainage_class
poorly
extreme_event
No colectado
extreme_salinity
No colectado
fao_class
Typic Argiudolls
fire
No colectado
flooding
No colectado
heavy_metals
No colectado
heavy_metals_meth
No colectado
horizon
A horizon
horizon_meth
faltante
isolation_source
NA
link_class_info
NA
link_climate_info
http://www.inia.uy/gras/Clima/Banco-datos-agroclimatico
local_class
NA
local_class_meth
NA
microbial_biomass
No colectado
microbial_biomass_meth
NA
misc_param
NA
omics_observ_id
NA
ph
NA
ph_meth
NA
pool_dna_extracts
No
previous_land_use
Natural grasslands (before 1995)
previous_land_use_meth
Faltante
salinity_meth
NA
samp_collect_device
NA
samp_mat_process
Roots of three oat plants per replicate were briefly washed with distilled water to remove loosely adhering soil and pooled to a composite sample. Rhizosphere was recovered from 5 g of roots by Stomacher treatment followed by centrifugation according to Schreiter et al. (2014). Rhizosphere pellets were stored at −20◦C until TC-DNA extraction.
samp_size
5g
sieving
NA
size_frac
NA
slope_aspect
NA
slope_gradient
NA
soil_type
NA
soil_type_meth
NA
source_material_id
NA
store_cond
stored at -20°C, extraction 5 moths later
texture
NA
texture_meth
Faltante
tot_n_meth
NA
tot_nitro
NA
tot_org_c_meth
NA
tot_org_carb
NA
water_content_soil
NA
water_content_soil_meth
NA
Replicate
biological replicate 6
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.soil