ERS4065073
Chitinophaga pinensis
Bacteroidetes assembled from Lake Mondsee
ENA-FIRST-PUBLIC
2022-07-21
ENA-LAST-UPDATE
2022-07-21
External Id
SAMEA110380099
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-07-21T20:27:47Z
INSDC last update
2022-07-21T20:27:47Z
INSDC status
public
Submitter Id
MoH-02may19-248
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
freshwater lake
collection date
2019-05-02
completeness score
82.43
completeness software
checkm
contamination score
0.37
environmental medium
fresh water
geographic location (country and/or sea)
Austria
geographic location (latitude)
47.806248
geographic location (longitude)
13.398749
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
local environmental context
lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS4065073
sample name
MoH-02may19-248
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach