Metagenome-assembled genome: SRR5279293_bin.37_CONCOCT_v1.1_MAG
uncultured Sutterella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5279293 of study SRP100575.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085826
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:16Z
INSDC last update
2023-01-03T00:33:16Z
INSDC status
public
Submitter Id
SRR5279293_bin.37_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-10-01
completeness score
86.88
completeness software
CheckM
contamination score
1.38
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
30.3
geographic location (longitude)
120.2
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
To reveal the relationship between the gut microbiome and ankylosing spondylitis, a quantitative metagenomics study that was based on deep shotgun sequencing of the gut microbial DNA from 211 Chinese individuals (97 patients and 104 healthy controls) was carried out. A total of 23,709 genes and 16 metagenomic species that were differentially abundant in the two groups were identified.
sample derived from
SAMN06348124
sample name
SRR5279293_bin.37_CONCOCT_v1.1_MAG
scientific_name
uncultured Sutterella sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach