Metagenome-assembled genome: ERR260185_bin.0_CONCOCT_v1.1_MAG
uncultured Ruminococcus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR260185 of study ERP002469.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084038
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:35Z
INSDC last update
2023-01-03T00:33:35Z
INSDC status
public
Submitter Id
ERR260185_bin.0_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
98.66
completeness software
CheckM
contamination score
0.67
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Gut metagenome in European women with normal, impaired and diabetic glucose control
sample derived from
SAMEA1906523
sample name
ERR260185_bin.0_CONCOCT_v1.1_MAG
scientific_name
uncultured Ruminococcus sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach