Metagenome-assembled genome: SRR5576005_bin.117_CONCOCT_v1.1_MAG
uncultured Candidatus Berkelbacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5576005 of study SRP107338.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082159
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:39Z
INSDC last update
2023-01-03T00:32:39Z
INSDC status
public
Submitter Id
SRR5576005_bin.117_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-09-17
completeness score
68.23
completeness software
CheckM
contamination score
1.5
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
42.06
geographic location (longitude)
-87.68
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we've shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sample derived from
SAMN06957054
sample name
SRR5576005_bin.117_CONCOCT_v1.1_MAG
scientific_name
uncultured Candidatus Berkelbacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach