Metagenome-assembled genome: SRR6007447_bin.102_CONCOCT_v1.1_MAG
uncultured Bacteroidota bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6007447 of study SRP116833.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082242
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:36Z
INSDC last update
2023-01-03T00:32:36Z
INSDC status
public
Submitter Id
SRR6007447_bin.102_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-11-01
completeness score
70.76
completeness software
CheckM
contamination score
2.14
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
we examined CIP removal and biodegradation using a sulfate-reducing upflow sludge bed (SRUSB) reactor during long-term operation. The ARGs in SRB sludge samples were also examined based on the high-throughput sequencing technique, to elucidate the possible degradation mechanism of CIP in the SRB sludge system based on the change in ARGs.
sample derived from
SAMN07551451
sample name
SRR6007447_bin.102_CONCOCT_v1.1_MAG
scientific_name
uncultured Bacteroidetes bacterium
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach