Metagenome-assembled genome: SRR5106509_bin.66_CONCOCT_v1.1_MAG
uncultured Porphyromonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5106509 of study SRP095060.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085821
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:13Z
INSDC last update
2023-01-03T00:33:13Z
INSDC status
public
Submitter Id
SRR5106509_bin.66_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-01-21
completeness score
96.29
completeness software
CheckM
contamination score
0.38
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
29.35
geographic location (longitude)
106.33
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
This study presented the bacterial diversity of human stool sample from the Vogt-Koyanagi-Harada disease patients in Chinese population
sample derived from
SAMN06115478
sample name
SRR5106509_bin.66_CONCOCT_v1.1_MAG
scientific_name
uncultured Porphyromonadaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach