Metagenome-assembled genome: ERR1297654_bin.56_CONCOCT_v1.1_MAG
uncultured Prevotella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1297654 of study ERP013827.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14083411
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:37Z
INSDC last update
2023-01-03T00:33:37Z
INSDC status
public
Submitter Id
ERR1297654_bin.56_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spades_v3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2009-01-01
completeness score
94.96
completeness software
CheckM
contamination score
4.3
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Netherlands
geographic location (latitude)
52.0
geographic location (longitude)
5.0
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Ten individuals with metabolic syndrome underwent a single faecal microbiota transplantation (FMT): 5 of which were allogenic, the other 5 autologous. Stool samples were collected before FMT (day 0) and days 2, 14, 42 and 84 after FMT; and from the donor before FMT. Metagenomic shotgun sequencing was performed on all samples.
sample derived from
SAMEA3882544
sample name
ERR1297654_bin.56_CONCOCT_v1.1_MAG
scientific_name
uncultured Prevotella sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach