Metagenome-assembled genome: SRR5024280_bin.55_CONCOCT_v1.1_MAG
uncultured Eubacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5024280 of study SRP093449.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085782
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:37Z
INSDC last update
2023-01-03T00:33:37Z
INSDC status
public
Submitter Id
SRR5024280_bin.55_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-02-16
completeness score
98.05
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
41.88
geographic location (longitude)
-87.63
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
De novo reconstruction of bacterial genomes allows high-resolution tracking of microbial colonization in Fecal Microbiota Transplantation experiments
sample derived from
SAMN06018975
sample name
SRR5024280_bin.55_CONCOCT_v1.1_MAG
scientific_name
uncultured Eubacterium sp.
sequencing method
NextSeq 550
taxonomic identity marker
multi-marker approach