Metagenome-assembled genome: SRR4028141_bin.71_CONCOCT_v1.1_MAG
Pseudonocardia thermophila
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4028141 of study SRP081806.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082032
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:33Z
INSDC last update
2023-01-03T00:32:33Z
INSDC status
public
Submitter Id
SRR4028141_bin.71_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2010-11-01
completeness score
99.11
completeness software
CheckM
contamination score
2.48
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
38.54027
geographic location (longitude)
-121.75008
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 metagenome
sample derived from
SAMN05518450
sample name
SRR4028141_bin.71_CONCOCT_v1.1_MAG
scientific_name
Pseudonocardia thermophila
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach