Metagenome-assembled genome: SRR9217400_bin.27_CONCOCT_v1.1_MAG
uncultured Peptoniphilus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR9217400 of study SRP200814.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14086154
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:32Z
INSDC last update
2023-01-03T00:33:32Z
INSDC status
public
Submitter Id
SRR9217400_bin.27_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
58.75
completeness software
CheckM
contamination score
1.05
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Italy
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Assessing the clinical relevance of the dental implant surrounding microbiome
sample derived from
SAMN11978113
sample name
SRR9217400_bin.27_CONCOCT_v1.1_MAG
scientific_name
uncultured Peptoniphilus sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach