Metagenome-assembled genome: SRR3724049_bin.31_CONCOCT_v1.1_MAG
uncultured Collinsella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3724049 of study SRP076907.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085718
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:48Z
INSDC last update
2023-01-03T00:33:48Z
INSDC status
public
Submitter Id
SRR3724049_bin.31_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2014-01-01
completeness score
87.72
completeness software
CheckM
contamination score
6.55
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Russia
geographic location (latitude)
56.51
geographic location (longitude)
35.55
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Gut metagenomes were isolated from people living in the Central region of Russia.
sample derived from
SAMN05214696
sample name
SRR3724049_bin.31_CONCOCT_v1.1_MAG
scientific_name
uncultured Collinsella sp.
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach