Metagenome-assembled genome: ERR505084_bin.47_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR505084 of study ERP005558.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084446
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:41Z
INSDC last update
2023-01-03T00:33:41Z
INSDC status
public
Submitter Id
ERR505084_bin.47_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes genome assembler v3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2012-01-01
completeness score
96.37
completeness software
CheckM
contamination score
0.81
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Australia
geographic location (latitude)
33.86
geographic location (longitude)
151.2111
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Two diets, Korean and Western diet. Each 6 individuals, half of which loose high weight and half of which loose little weight. Fecal samples taken before and after diet (3 months).
sample derived from
SAMEA2452115
sample name
ERR505084_bin.47_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 1000
taxonomic identity marker
multi-marker approach