Metagenome-assembled genome: ERR1953522_bin.75_CONCOCT_v1.1_MAG
uncultured Collinsella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1953522 of study ERP022699.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14083865
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:19Z
INSDC last update
2023-01-03T00:33:19Z
INSDC status
public
Submitter Id
ERR1953522_bin.75_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
100
completeness software
CheckM
contamination score
3.63
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
We believe spore forming bacteria could play a key role in maintaining the integrity of the intestinal microbiota. Transmission of spore-formers could help promote a high level of diversity within the intestinal microbiota. In addition, due to their robust nature, spore formers could also provide a means of resilience when the community is challenged. To investigate the role of intestinal spore forming bacteria in the microbiota we wish to perform metagenomic sequencing of the microbiota obtained from faecal samples from 6 healthy human donors. By comparing the data generated with previously generated data from the same donors we can start to understand the dynamics of the spore forming bacteria over time.
sample derived from
SAMEA4370583
sample name
ERR1953522_bin.75_CONCOCT_v1.1_MAG
scientific_name
uncultured Collinsella sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach