Metagenome-assembled genome: ERR589352_bin.84_CONCOCT_v1.1_MAG
uncultured Gemella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR589352 of study ERP006678.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084516
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:33Z
INSDC last update
2023-01-03T00:33:33Z
INSDC status
public
Submitter Id
ERR589352_bin.84_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2110-01-01
completeness score
83.89
completeness software
CheckM
contamination score
3.98
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
55.676098
geographic location (longitude)
12.568337
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Bacterial infection has long been implicated with rheumatoid arthritis (RA), but a systematic analysis of the probiotic and pathogenic microbiome in RA has been lacking. It is not clear whether and how the gut or oral microbial community is compositionally and functionally altered in RA, and whether and how the microbiota at different body sites overlap. Here we perform whole-genome shotgun sequencing for fecal, dental and salivary samples from a large cohort of RA patients, analyze metagenomic linkage groups to construct an RA classifier.
sample derived from
SAMEA2737884
sample name
ERR589352_bin.84_CONCOCT_v1.1_MAG
scientific_name
uncultured Gemella sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach