Metagenome-assembled genome: SRR2047620_bin.39_CONCOCT_v1.1_MAG
Cronobacter sakazakii
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2047620 of study SRP058320.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085600
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:34Z
INSDC last update
2023-01-03T00:33:34Z
INSDC status
public
Submitter Id
SRR2047620_bin.39_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2012-03-20
completeness score
98.99
completeness software
CheckM
contamination score
4.48
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
32.8094
geographic location (longitude)
-96.8365
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Comparative analysis of the gut microbiomes of pediatric stem cell transplantation patients who do or do not develop intestinal graft-versus-host-disease (GVHD)
sample derived from
SAMN03653683
sample name
SRR2047620_bin.39_CONCOCT_v1.1_MAG
scientific_name
Cronobacter sakazakii
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach