Metagenome-assembled genome: SRR11615773_bin.1_CONCOCT_v1.1_MAG
uncultured Lachnospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11615773 of study SRP258728.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085435
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:10Z
INSDC last update
2023-01-03T00:33:10Z
INSDC status
public
Submitter Id
SRR11615773_bin.1_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2019-03-20
completeness score
99.37
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Israel
geographic location (latitude)
32.83305
geographic location (longitude)
34.98571
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Carbapenemase-producing Enterobacteriaceae (CPE) infections lead to considerable morbidity and mortality. We assessed the potential of fecal microbiota transplantation (FMT) to eradicate CPE carriage and to explain failure or success through microbiome analyses.
sample derived from
SAMN14734838
sample name
SRR11615773_bin.1_CONCOCT_v1.1_MAG
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach