ERS6344541
Candidatus Pelagibacterales bacterium
Proteobacteria assembled from Lake Attersee
INSDC center name
BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
Submitter Id
AH-24oct19-262
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
freshwater lake
collection date
2019-10-24
completeness score
90.29
completeness software
checkm
contamination score
0.6
environmental medium
fresh water
geographic location (country and/or sea)
Austria
geographic location (latitude)
47.865613
geographic location (longitude)
13.544841
investigation type
metagenome-assembled genome
isolation source
Freshwater lake
local environmental context
lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS6344541
sample name
AH-24oct19-262
scientific_name
Candidatus Pelagibacterales bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach