Metagenome-assembled genome: ERR2013560_bin.44_CONCOCT_v1.1_MAG
uncultured Collinsella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2013560 of study ERP020710.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14083883
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:35Z
INSDC last update
2023-01-03T00:33:35Z
INSDC status
public
Submitter Id
ERR2013560_bin.44_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spades_v3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-01-01
completeness score
90.15
completeness software
CheckM
contamination score
7.73
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
The gut microbiome could modulate metabolic health and affect insulin resistance, which may play a role in the observed increase in gestational diabetes mellitus (GDM). The aim of this study was to reveal any relationships between gut microbiome composition and GDM in pregnant women at 24-28 weeks gestation. Fecal samples were collected from 124 pregnant women (43 GDM patients and 81 healthy control subjects) during 24-28 weeks gestation, as part of the Born in Guangzhou Cohort Study, China. The gut microbiota profiles were assessed by metagenomic shotgun sequencing to analyze microbial diversity at all taxonomic levels. Maternal GDM status was assessed by 2-hour 75g OGTT between the 24th and 28th week of gestation.
sample derived from
SAMEA37061668
sample name
ERR2013560_bin.44_CONCOCT_v1.1_MAG
scientific_name
uncultured Collinsella sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach