Metagenome-assembled genome: SRR3108079_bin.42_CONCOCT_v1.1_MAG
uncultured Alphaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3108079 of study SRP068612.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085674
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:21Z
INSDC last update
2023-01-03T00:33:21Z
INSDC status
public
Submitter Id
SRR3108079_bin.42_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
98.92
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
The goals of this study were to compare sequencing technology results and investigate their 16S rRNA gene and Metagenomic sequencing ability.
sample derived from
SAMN04414080
sample name
SRR3108079_bin.42_CONCOCT_v1.1_MAG
scientific_name
uncultured Alphaproteobacteria bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach