Metagenome-assembled genome: ERR1562573_bin.51_CONCOCT_v1.1_MAG
uncultured Lachnospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1562573 of study ERP016797.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14080556
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:53Z
INSDC last update
2023-01-03T00:32:53Z
INSDC status
public
Submitter Id
ERR1562573_bin.51_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
75.98
completeness software
CheckM
contamination score
2.89
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
A total of 24 C57BL6 mice were used for this analysis. Six mice received dextran sodium sulfate (DSS) (3%) in their drinking water ab libitum. In addition to DSS treatment 6 mice were given sodium tungstate (0.2%) or sodium tungstate plus DSS in their drinking water ab libitum. A control group was included where 6 mice were given untreated water. All animals received their treatments for a total of 9 days.
sample derived from
SAMEA4376700
sample name
ERR1562573_bin.51_CONCOCT_v1.1_MAG
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach