Metagenome-assembled genome: ERR2764814_bin.13_CONCOCT_v1.1_MAG
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764814 of study ERP110622.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084156
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:44Z
INSDC last update
2023-01-03T00:33:44Z
INSDC status
public
Submitter Id
ERR2764814_bin.13_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2011-01-01
completeness score
60.2
completeness software
CheckM
contamination score
0.16
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Germany
geographic location (latitude)
49.3988
geographic location (longitude)
8.6724
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample derived from
SAMEA4873300
sample name
ERR2764814_bin.13_CONCOCT_v1.1_MAG
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach