Metagenome-assembled genome: ERR526087_bin.2_CONCOCT_v1.1_MAG
uncultured Dialister sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR526087 of study ERP005989.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084480
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:15Z
INSDC last update
2023-01-03T00:33:15Z
INSDC status
public
Submitter Id
ERR526087_bin.2_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2008-01-01
completeness score
99.37
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Denmark
geographic location (latitude)
40.416634
geographic location (longitude)
-3.7037659
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
The gastrointestinal tracts of mammalians are sterile in utero and colonized by microorganisms immediately after delivery. The subsequent development of the infant gut microbiota involves a complex succession of microbes, driven by factors such as gestational age, mode of delivery, antibiotic use, hygiene, geographical zone and type of feeding.
sample derived from
SAMEA2580304
sample name
ERR526087_bin.2_CONCOCT_v1.1_MAG
scientific_name
uncultured Dialister sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach