Metagenome-assembled genome: SRR1747059_bin.78_CONCOCT_v1.1_MAG
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1747059 of study SRP051834.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14080905
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:59Z
INSDC last update
2023-01-03T00:32:59Z
INSDC status
public
Submitter Id
SRR1747059_bin.78_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2012-07-10
completeness score
62.82
completeness software
CheckM
contamination score
0.85
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
Kenya
geographic location (latitude)
-2.717
geographic location (longitude)
37.1
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
Raw metagenomic sequencing reads collected from samples from 48 adult baboons in two social groups during July - August 2012.
sample derived from
SAMN03275612
sample name
SRR1747059_bin.78_CONCOCT_v1.1_MAG
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach