Metagenome-assembled genome: SRR5519171_bin.15_CONCOCT_v1.1_MAG
uncultured Helicobacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5519171 of study SRP106687.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085834
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:18Z
INSDC last update
2023-01-03T00:33:18Z
INSDC status
public
Submitter Id
SRR5519171_bin.15_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2013-07-27
completeness score
96.58
completeness software
CheckM
contamination score
2.6
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Mexico
geographic location (latitude)
19.385086
geographic location (longitude)
-99.09375
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Mexican childhood obesity
sample derived from
SAMN06885162
sample name
SRR5519171_bin.15_CONCOCT_v1.1_MAG
scientific_name
uncultured Helicobacter sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach