Metagenome-assembled genome: SRR5650093_bin.48_CONCOCT_v1.1_MAG
uncultured Desulfovibrio sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5650093 of study SRP108708.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085942
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:19Z
INSDC last update
2023-01-03T00:33:19Z
INSDC status
public
Submitter Id
SRR5650093_bin.48_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2013-01-01
completeness score
97.44
completeness software
CheckM
contamination score
2.98
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
42.3632
geographic location (longitude)
-71.0688
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Longitudinal Stool Study of patients with IBD and controls. This project combines data from PRISM and STINKI cohorts to characterize the gut microbiome of individuals with IBD and controls over time.
sample derived from
SAMN07199914
sample name
SRR5650093_bin.48_CONCOCT_v1.1_MAG
scientific_name
uncultured Desulfovibrio sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach