Metagenome-assembled genome: SRR6231156_bin.78_CONCOCT_v1.1_MAG
uncultured Rickettsiales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6231156 of study SRP121672.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082335
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:17Z
INSDC last update
2023-01-03T00:32:17Z
INSDC status
public
Submitter Id
SRR6231156_bin.78_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-02-23
completeness score
86.21
completeness software
CheckM
contamination score
1.1
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
35.152912
geographic location (longitude)
-80.85299
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
Wastewater treatment plants (WWTPs) are thought to be potential incubators of antibiotic resistance. Persistence of commonly used antibiotics in wastewater may increase the potential for survival and horizontal transfer of adaptive genes in bacterial populations, some of which may pose a threat to human health. In this study, we assayed the concentrations of ten common antibiotics in wastewater influents, treatment stage influents and effluents, and upstream and downstream surface waters from two Charlotte area wastewater plants, including residential and hospital trunkline locations. We performed whole genome shotgun sequencing, to assay the taxonomic and resistome compositions at each of these sites across four time points during the late winter to mid-summer of 2016.
sample derived from
SAMN07839288
sample name
SRR6231156_bin.78_CONCOCT_v1.1_MAG
scientific_name
uncultured Rickettsiales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach