Metagenome-assembled genome: SRR7658585_bin.58_CONCOCT_v1.1_MAG
Pseudoselenomonas ruminantium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7658585 of study SRP156699.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085967
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:29Z
INSDC last update
2023-01-03T00:33:29Z
INSDC status
public
Submitter Id
SRR7658585_bin.58_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
93.08
completeness software
CheckM
contamination score
0.55
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Madagascar
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Stool samples from 112 individuals (two villages) in two rural communities of north-eastern Madagascar. Samples were collected by the Madagascar Health and Environmental Research (MAHERY) initiative between 2013 and 2014, and sequenced with Illumina HiSeq 2500.
sample derived from
SAMN09781760
sample name
SRR7658585_bin.58_CONCOCT_v1.1_MAG
scientific_name
Selenomonas ruminantium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach