ERS6344540
Brevundimonas vancanneytii
Proteobacteria assembled from Lake Attersee
ENA-FIRST-PUBLIC
2022-07-21
ENA-LAST-UPDATE
2022-07-21
External Id
SAMEA110379282
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-07-21T12:15:47Z
INSDC last update
2022-07-21T12:15:47Z
INSDC status
public
Submitter Id
AE-24oct19-99
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
freshwater lake
collection date
2019-10-24
completeness score
94.05
completeness software
checkm
contamination score
1.36
environmental medium
fresh water
geographic location (country and/or sea)
Austria
geographic location (latitude)
47.865613
geographic location (longitude)
13.544841
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
local environmental context
lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS6344540
sample name
AE-24oct19-99
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach