Metagenome-assembled genome: ERR3160565_bin.81_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3160565 of study ERP113515.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084178
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:12Z
INSDC last update
2023-01-03T00:33:12Z
INSDC status
public
Submitter Id
ERR3160565_bin.81_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
93.29
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
We carried out an intervention study on six obesity patients using a traditional PFE for 4 weeks. Significant weight losses were observed on all subjects after intervention. Fecal microbial metagenomic sequencing and metabolomics profiling were performed before and after the intervention, by which we identified several coordinated changes on the gut microbial community and metabolites probably responsible for the cause of weight loss
sample derived from
SAMEA5357966
sample name
ERR3160565_bin.81_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach