Metagenome-assembled genome: ERR688583_bin.63_CONCOCT_v1.1_MAG
uncultured Porphyromonas sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR688583 of study ERP008729.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085061
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:23Z
INSDC last update
2023-01-03T00:33:23Z
INSDC status
public
Submitter Id
ERR688583_bin.63_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2013-01-01
completeness score
99.74
completeness software
CheckM
contamination score
0.39
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Austria
geographic location (latitude)
47.80151
geographic location (longitude)
13.04292
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Colorectal cancer, a commonly diagnosed cancer in the elderly, often develops slowly from benign polyps called adenoma. The gut microbiota, with its critical roles in nutrient metabolism and immune modulation, is believed to be directly involved in colorectal carcinogenesis. The identity and functional capacity of the adenoma- or carcinoma-related gut microbe(s), however, have not been surveyed in a comprehensive manner. Here we perform metagenomewide association study (MGWAS) on stools from healthy controls, advanced adenoma and carcinoma patients, revealing gene markers from over 100 bacterial strains enriched in each group.
sample derived from
SAMEA3136763
sample name
ERR688583_bin.63_CONCOCT_v1.1_MAG
scientific_name
uncultured Porphyromonas sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach