ERS4065071
Actinomyces viscosus
Actinobacteria assembled from Lake Lugano
ENA-FIRST-PUBLIC
2022-07-21
ENA-LAST-UPDATE
2022-07-21
External Id
SAMEA110379457
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-07-21T12:15:47Z
INSDC last update
2022-07-21T12:15:47Z
INSDC status
public
Submitter Id
LH-02apr19-272
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
freshwater lake
collection date
2019-04-02
completeness score
90.4
completeness software
checkm
contamination score
0.95
environmental medium
fresh water
geographic location (country and/or sea)
Italy
geographic location (latitude)
46.009123
geographic location (longitude)
9.021579
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
local environmental context
lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS4065071
sample name
LH-02apr19-272
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach