Metagenome-assembled genome: ERR2619710_bin.8_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2619710 of study ERP109040.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14084071
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:07Z
INSDC last update
2023-01-03T00:33:07Z
INSDC status
public
Submitter Id
ERR2619710_bin.8_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2013-10-01
completeness score
99.33
completeness software
CheckM
contamination score
0.67
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Cameroon
geographic location (latitude)
3.0143206
geographic location (longitude)
10.103191
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
In order to examine how the subsistence mode affects the human gut microbiome, we analyzed faecal metagenomes of 58 healthy adults from Cameroon (hunter-gatherers, farmers and fishers).Our aim is to describe taxonomical and functional diversity, as well as to unveil the interactions between the eukaryotic and prokaryotic componenet of the gut microbiome.
sample derived from
SAMEA4719763
sample name
ERR2619710_bin.8_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach