Metagenome-assembled genome: SRR5894287_bin.68_CONCOCT_v1.1_MAG
uncultured Desulfuromonas sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5894287 of study SRP114798.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082181
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:20Z
INSDC last update
2023-01-03T00:32:20Z
INSDC status
public
Submitter Id
SRR5894287_bin.68_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-01-01
completeness score
99.19
completeness software
CheckM
contamination score
5.16
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
37.8629
geographic location (longitude)
-122.3132
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
Metabolic interactions and genetic exchange are important features of microbial communities. We performed genome-resolved metagenomics to characterize communities performing dissimilatory perchlorate reduction, a metabolism that involves reactive chlorine species and horizontal gene transfer of a conserved functional gene cluster. Distinct communities from source marine sediment and enrichments of varying salinity were recovered, and enriched populations included perchlorate-reducing bacteria as well as putative interacting populations of chlorate-reducing, sulfur-reducing, and fermentative microorganisms. Vectors for perchlorate reduction genes and a novel gene cluster involved in perchlorate reduction were also identified.
sample derived from
SAMN07138185
sample name
SRR5894287_bin.68_CONCOCT_v1.1_MAG
scientific_name
uncultured Desulfuromonas sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach