Metagenome-assembled genome: SRR5275432_bin.6_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5275432 of study SRP100446.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14081057
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:57Z
INSDC last update
2023-01-03T00:32:57Z
INSDC status
public
Submitter Id
SRR5275432_bin.6_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spadesv3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2011-12-13
completeness score
95.97
completeness software
CheckM
contamination score
1.4
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
The presence of advanced fibrosis in nonalcoholic fatty liver disease (NAFLD) is the most important predictor of liver mortality. The aim of this study was to examine the diagnostic&lt;/p&gt;&lt;p&gt;accuracy of a gut-microbiota derived metagenomic signature for detecting the presence of advanced fibrosis in NAFLD. In this prospective study, we characterized the microbiome signatures associated with advanced fibrosis (defined as stage 3 or 4 fibrosis) in uniquely well characterized biopsy- and imaging-phenotyped patients with NAFLD. Gut microbiome&lt;/p&gt;&lt;p&gt;compositions of the patients were determined using whole-genome shotgun sequencing of DNA extracted from stool samples.
sample derived from
SAMN06328429
sample name
SRR5275432_bin.6_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach