Metagenome-assembled genome: ERR1305901_bin.60_CONCOCT_v1.1_MAG
uncultured Methanomassiliicoccus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1305901 of study ERP014480.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14083448
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:11Z
INSDC last update
2023-01-03T00:33:11Z
INSDC status
public
Submitter Id
ERR1305901_bin.60_CONCOCT_v1.1_MAG
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
spades_v3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2010-01-01
completeness score
98.79
completeness software
CheckM
contamination score
0.81
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Denmark
geographic location (latitude)
55.65
geographic location (longitude)
12.47
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Roux-en-Y gastric bypass (RYGB) is an effective means to achieve sustained weight loss for morbidly obese individuals. Besides rapid weight reduction, patients achieve major improvements of insulin sensitivity and glucose homeostasis. Dysbiosis of gut microbiota has been associated with obesity and some of its co-morbidities like type 2 diabetes, and major changes of gut bacterial communities have been hypothesized to mediate part of the beneficial metabolic effects observed after RYGB. This study we describe changes in gut microbial taxonomic composition and functional potential following RYGB.
sample derived from
SAMEA3888917
sample name
ERR1305901_bin.60_CONCOCT_v1.1_MAG
scientific_name
uncultured Methanomassiliicoccus sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach