Metagenome-assembled genome: SRR5574510_bin.46_CONCOCT_v1.1_MAG
uncultured Muribaculaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5574510 of study SRP107170.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14081112
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:04Z
INSDC last update
2023-01-03T00:33:04Z
INSDC status
public
Submitter Id
SRR5574510_bin.46_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-01-25
completeness score
80.49
completeness software
CheckM
contamination score
1.51
environment (biome)
Host-associated
environment (feature)
Mammals
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
32.12
geographic location (longitude)
118.78
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
metagenomic source
gut metagenome
project name
This study presented the bacteria of feces sample from the C57BL/6 mice.
sample derived from
SAMN07138966
sample name
SRR5574510_bin.46_CONCOCT_v1.1_MAG
scientific_name
uncultured Muribaculaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach