Metagenome-assembled genome: SRR5007349_bin.118_CONCOCT_v1.1_MAG
Thermodesulfovibrio thiophilus
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5007349 of study SRP093101.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082038
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:34Z
INSDC last update
2023-01-03T00:32:34Z
INSDC status
public
Submitter Id
SRR5007349_bin.118_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-02-18
completeness score
97.2
completeness software
CheckM
contamination score
0.92
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
37.8
geographic location (longitude)
-122.27
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
Metagenomics of anaerobic wastewater microbial communities to study anthropogenic carbon cycling
sample derived from
SAMN05720282
sample name
SRR5007349_bin.118_CONCOCT_v1.1_MAG
scientific_name
Thermodesulfovibrio thiophilus
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach