Metagenome-assembled genome: SRR7403932_bin.10_CONCOCT_v1.1_MAG
uncultured Actinomyces sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7403932 of study SRP150988.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085957
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:26Z
INSDC last update
2023-01-03T00:33:26Z
INSDC status
public
Submitter Id
SRR7403932_bin.10_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-04-01
completeness score
97.32
completeness software
CheckM
contamination score
1.35
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
37.4335
geographic location (longitude)
-122.1754
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Identify enteric strains matching patient bloodstream isolates.
sample derived from
SAMN09464911
sample name
SRR7403932_bin.10_CONCOCT_v1.1_MAG
scientific_name
uncultured Actinomyces sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach