Metagenome-assembled genome: SRR3582179_bin.37_CONCOCT_v1.1_MAG
uncultured Flavobacteriales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3582179 of study SRP075633.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085714
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:45Z
INSDC last update
2023-01-03T00:33:45Z
INSDC status
public
Submitter Id
SRR3582179_bin.37_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
95.92
completeness software
CheckM
contamination score
0.54
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
This is an uncontrolled, prospective open-label study of FMT from healthy donors to subjects with active CD. A single FMT was performed via colonoscopy. Stool samples were collected prior to FMT and at two time points, four and eight weeks after FMT. Recipients' microbial diversity, mucosal T-cell phenotypes and clinical and inflammatory parameters were measured over 12 weeks, and safety over 26 weeks.
sample derived from
SAMN05065779
sample name
SRR3582179_bin.37_CONCOCT_v1.1_MAG
scientific_name
uncultured Flavobacteriales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach