Metagenome-assembled genome: SRR3993029_bin.78_CONCOCT_v1.1_MAG
uncultured Prevotella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3993029 of study SRP080787.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085743
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:16Z
INSDC last update
2023-01-03T00:33:16Z
INSDC status
public
Submitter Id
SRR3993029_bin.78_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
unknown v0.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2010-10-01
completeness score
84.52
completeness software
CheckM
contamination score
0.37
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
43.95
geographic location (longitude)
116.11
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Mongolian Metagenome
sample derived from
SAMN05414958
sample name
SRR3993029_bin.78_CONCOCT_v1.1_MAG
scientific_name
uncultured Prevotella sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach