Metagenome-assembled genome: SRR6059111_bin.45_CONCOCT_v1.1_MAG
uncultured Atopobium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6059111 of study SRP118345.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085951
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:24Z
INSDC last update
2023-01-03T00:33:24Z
INSDC status
public
Submitter Id
SRR6059111_bin.45_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-01-19
completeness score
59.33
completeness software
CheckM
contamination score
0.81
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Spain
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Our research focused on the uncultured human microbial community present in saliva of IgA immunodeficiency people and healthy people
sample derived from
SAMN07666319
sample name
SRR6059111_bin.45_CONCOCT_v1.1_MAG
scientific_name
uncultured Atopobium sp.
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach