Metagenome-assembled genome: SRR12395647_bin.68_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12395647 of study SRP276112.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085466
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:21Z
INSDC last update
2023-01-03T00:33:21Z
INSDC status
public
Submitter Id
SRR12395647_bin.68_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.14.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2015-08-20
completeness score
97.52
completeness software
CheckM
contamination score
3.55
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Canada
geographic location (latitude)
42.98
geographic location (longitude)
-81.24
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Metagenomic sequencing of the gut from kidney stone patients and healthy controls
sample derived from
SAMN15661744
sample name
SRR12395647_bin.68_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach