Metagenome-assembled genome: SRR1197515_bin.66_CONCOCT_v1.1_MAG
uncultured Faecalibacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1197515 of study SRP040146.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085443
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:13Z
INSDC last update
2023-01-03T00:33:13Z
INSDC status
public
Submitter Id
SRR1197515_bin.66_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
100
completeness software
CheckM
contamination score
0.0
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
C.diff FMT
sample derived from
SAMN02676202
sample name
SRR1197515_bin.66_CONCOCT_v1.1_MAG
scientific_name
uncultured Faecalibacterium sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach