Metagenome-assembled genome: SRR2938145_bin.51_CONCOCT_v1.1_MAG
uncultured Lachnoclostridium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2938145 of study SRP066479.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085644
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:08Z
INSDC last update
2023-01-03T00:33:08Z
INSDC status
public
Submitter Id
SRR2938145_bin.51_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2013-01-07
completeness score
80.75
completeness software
CheckM
contamination score
1.34
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
El Salvador
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Microbiome and resistome of human fecal and environmental microbiota from rural El Salvador and peri-urban Lima, Peru
sample derived from
SAMN04261158
sample name
SRR2938145_bin.51_CONCOCT_v1.1_MAG
scientific_name
uncultured Lachnoclostridium sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach