Amplicon Sequenced ITS2 region of soil sample GarvinoaiviGram4
soil metagenome
Soil sample, part of a study dealing historical sites and their soil microbial communities
ENA first public
2024-04-25
External Id
SAMEA112795672
INSDC center name
University of Oulu (FINLAND)
INSDC last update
2023-03-18T18:51:16Z
INSDC status
public
Submitter Id
GarvinoaiviGram4.ITS2
broad-scale environmental context
tundra
collection date
2021-08-08
composite design/sieving (if any)
sieving 2 mm
depth
0-0.06
elevation
427
environmental medium
organic soil layer
geographic location (country and/or sea)
Finland
geographic location (latitude)
69.906673
geographic location (longitude)
26.533665
history/previous land use
reindeer corral
local environmental context
heath
pcr primers
fITS7-ITS4 (fwd: GTGARTCATCGAATCTTTG; rev: TCCTCCGCTTATTGATATGC)
pooling of DNA extracts (if done)
pooled of two extractions
project name
Historical sites as a novel tool for predicting long-term boreal and subarctic ecosystem change (HISTECO)
sample collection device
steel corer diameter 2.5 cm
sample material processing
litter removal
sample name
GarvinoaiviGram4.ITS2
sample volume or weight for DNA extraction
509,8
sample weight for DNA extraction
0,5098
scientific_name
soil metagenome
sequencing method
Illumina Miseq
storage conditions (fresh/frozen/other)
frozen