Metagenome-assembled genome: Lapin-011__bin40
uncultured Bacilli bacterium
This sample represents a metagenomic bin from the metagenomic sample ERS14339292
ENA-FIRST-PUBLIC
2022-12-16
ENA-LAST-UPDATE
2022-12-16
External Id
SAMEA112230151
INSDC center alias
INRA-META
INSDC center name
Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public
2022-12-16T00:27:49Z
INSDC last update
2022-12-16T00:27:49Z
INSDC status
public
Submitter Id
Lapin-011__bin40
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes 3.15.3
binning parameters
MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module
binning software
MetaBAT v2.12.1, SemiBin, metaWRAP v1.3
broad-scale environmental context
host-associated habitat
collection date
2014
completeness score
76.97
completeness software
checkm v1.1.3
contamination score
0.56
environmental medium
feces
geographic location (country and/or sea)
France
geographic location (latitude)
43.527378
geographic location (longitude)
1.4996728
investigation type
metagenome-assembled genome
isolation_source
rabbit gut
local environmental context
host-associated habitat
metagenomic source
rabbit gut metagenome
project name
MicroReset Rabbit
sample derived from
ERS14339292
sample name
Lapin-011__bin40
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach