Metagenome-assembled genome: SRR1761700_bin.41_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1761700 of study SRP052307.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085556
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:13Z
INSDC last update
2023-01-03T00:33:13Z
INSDC status
public
Submitter Id
SRR1761700_bin.41_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2012-01-01
completeness score
91.28
completeness software
CheckM
contamination score
0.67
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Peru
geographic location (latitude)
-5.68
geographic location (longitude)
-73.33
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Gut microbiome diversity
sample derived from
SAMN03283273
sample name
SRR1761700_bin.41_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach