Metagenome-assembled genome: SRR2037085_bin.21_CONCOCT_v1.1_MAG
uncultured Mobiluncus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2037085 of study SRP033553.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085597
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:34Z
INSDC last update
2023-01-03T00:33:34Z
INSDC status
public
Submitter Id
SRR2037085_bin.21_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes genome assembler v3.11.1
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2014-07-06
completeness score
65.86
completeness software
CheckM
contamination score
0.52
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
39.9
geographic location (longitude)
116.3
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Microbiome associated with periodontal health and disease
sample derived from
SAMN03703356
sample name
SRR2037085_bin.21_CONCOCT_v1.1_MAG
scientific_name
uncultured Mobiluncus sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach