Metagenome-assembled genome: SRR6227243_bin.54_CONCOCT_v1.1_MAG
uncultured Acidobacteriota bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6227243 of study SRP122254.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14082271
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:32:18Z
INSDC last update
2023-01-03T00:32:18Z
INSDC status
public
Submitter Id
SRR6227243_bin.54_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.12.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-05-01
completeness score
63.27
completeness software
CheckM
contamination score
2.36
environment (biome)
Engineered
environment (feature)
Engineered
environment (material)
Engineered
geographic location (country and/or sea)
China
geographic location (latitude)
31.3
geographic location (longitude)
121.23
investigation type
metagenome-assembled genome
isolation_source
metagenome
metagenomic source
metagenome
project name
enrichment culture of tidal flat sediments from Yangtze Estuary
sample derived from
SAMN07837293
sample name
SRR6227243_bin.54_CONCOCT_v1.1_MAG
scientific_name
uncultured Acidobacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach