Metagenome-assembled genome: ERR1600694_bin.75_CONCOCT_v1.1_MAG
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1600694 of study ERP016884.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14083767
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:19Z
INSDC last update
2023-01-03T00:33:19Z
INSDC status
public
Submitter Id
ERR1600694_bin.75_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2016-01-01
completeness score
94.66
completeness software
CheckM
contamination score
3.6
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
T2D patients were randomly divided into two groups receiving WTP diet or usual care. The gut microbiota changed and the host clinical parameters were improved. Several key bacteria were identified.
sample derived from
SAMEA4385552
sample name
ERR1600694_bin.75_CONCOCT_v1.1_MAG
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach