Metagenome-assembled genome: SRR2992899_bin.88_CONCOCT_v1.1_MAG
uncultured Ruminococcus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2992899 of study SRP067325.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085669
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:18Z
INSDC last update
2023-01-03T00:33:18Z
INSDC status
public
Submitter Id
SRR2992899_bin.88_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspadesv3.10.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2014-01-01
completeness score
97.32
completeness software
CheckM
contamination score
1.34
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
Metagenomic sequencing to identify and measure the abundances of microorganisms present in stool samples from athletes
sample derived from
SAMN04329779
sample name
SRR2992899_bin.88_CONCOCT_v1.1_MAG
scientific_name
uncultured Ruminococcus sp.
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach