Metagenome-assembled genome: SRR5558010_bin.75_CONCOCT_v1.1_MAG
uncultured Collinsella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5558010 of study SRP100518.
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA14085845
INSDC center alias
EBI
INSDC center name
European Bioinformatics Institute
INSDC first public
2023-01-03T00:33:21Z
INSDC last update
2023-01-03T00:33:21Z
INSDC status
public
Submitter Id
SRR5558010_bin.75_CONCOCT_v1.1_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.13.0
binning parameters
Default
binning software
CONCOCT v1.1
broker name
EMG broker account, EMBL-EBI
collection date
2014-11-04
completeness score
93.55
completeness software
CheckM
contamination score
2.13
environment (biome)
Host-associated
environment (feature)
Human
environment (material)
Digestive system
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.99774
geographic location (longitude)
2.820006
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
metagenomic source
human gut metagenome
project name
In this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota.
sample derived from
SAMN06233224
sample name
SRR5558010_bin.75_CONCOCT_v1.1_MAG
scientific_name
uncultured Collinsella sp.
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach