marine metagenome
collection_date
2022-02-12T01:23:00Z
depth
8 m
env_broad_scale
7 Other
env_local_scale
7.1.2 Coastal water-production
env_medium
Sea water [ENVO_00002149]
geo_loc_name
Australia:Great Barrier Reef [GAZ_00009717]
lat_lon
16.7867 S 145.7483 E
sample_id
102.100.100/142703
source_mat_id
http://hdl.handle.net/102.100.100/142703
sample_site_location_description
Yorkey's Knob
sample_submitter
Yun Kit Yeoh[y.yeoh@aims.gov.au;https://orcid.org/0000-0003-0241-6117]|David G. Bourne[david.bourne@jcu.edu.au;https://orcid.org/0000-0002-1492-8710]
sample_attribution
Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS
funding_agency
AIMS; CSIRO; IMOS
samp_collect_device
meth_1.5.2 (https://research.csiro.au/ambsm/)
samp_mat_process
meth_1.5.2 (https://research.csiro.au/ambsm/)
store_cond
meth_1.5.2 (https://research.csiro.au/ambsm/)
biotic_relationship
free living
general_env_feature
Marine - neritic (coastal off shore)
notes
Not provided
sample_type
Coastal water
nucl_acid_ext
meth_3.1.9 (https://research.csiro.au/ambsm/)
dna_concentration_submitter
not collected
dna_concentration_submitter_meth
Not provided
absorbance_260_280_ratio_submitter
-9999
alkalinity
not collected
ammonium
below detection limit
ammonium_meth
meth_2.25 (https://research.csiro.au/ambsm/)
chlorophyll_a
0.296 mg/m3
chlorophyll_a_meth
meth_2.25 (https://research.csiro.au/ambsm/)
chlorophyll_ctd
not collected
coastal_id
WQQ515_D1
conductivity_aqueous
not collected
fluor
not collected
fluor_meth
Not provided
imos_site_code
CSYKK
microbial_abundance
632173 cells/mL
microbial_abundance_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate
not collected
nitrate_meth
Not provided
nitrate_nitrite
0.025 μmol/L
nitrate_nitrite_meth
meth_2.25 (https://research.csiro.au/ambsm/)
nitrite
below detection limit
nitrite_meth
meth_2.25 (https://research.csiro.au/ambsm/)
oxygen
not collected
oxygen_meth
Not provided
par
not collected
par_meth
Not provided
part_org_carb
8.028 μmol/L
part_org_carb_meth
meth_2.25 (https://research.csiro.au/ambsm/)
ph
not collected
ph_meth
Not provided
phosphate
0.03 μmol/L
phosphate_meth
meth_2.25 (https://research.csiro.au/ambsm/)
picoeukaryotes
4332 cells/mL
picoeukaryotes_meth
meth_2.2 (https://research.csiro.au/ambsm/)
prochlorococcus
14529 cells/mL
prochlorococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity
not collected
salinity_meth
Not provided
salinity_lab
33.756 PSU
salinity_lab_meth
meth_2.25 (https://research.csiro.au/ambsm/)
samp_size
2 L
samp_vol_we_dna_ext
2 L
sample_volume_notes
Not provided
secchi_depth
9 m
secchi_depth_meth
meth_2.25 (https://research.csiro.au/ambsm/)
silicate
4.27 μmol/L
silicate_meth
meth_2.25 (https://research.csiro.au/ambsm/)
synechococcus
113995 cells/mL
synechococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synonyms
YKK20220212_102.100.100/142703_8
temp
29.514 degC
temp_meth
meth_2.25 (https://research.csiro.au/ambsm/)
tot_depth_water_col
11 m
tot_depth_water_col_meth
meth_2.25 (https://research.csiro.au/ambsm/)
tot_nitro
not collected
tot_nitro_meth
Not provided
tot_phosp
not collected
tot_phosp_meth
Not provided
transmittance
not collected
tss
0.929 mg/L
tss_meth
meth_2.25 (https://research.csiro.au/ambsm/)
turbidity
not collected
turbidity_meth
Not provided
url
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/142703
AustralianMicrobiome_metadata_defs_url
https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
isolation_source
Coastal water
isolate
102.100.100/142703_8
ncbi_txid
408172
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water