Candidatus Gallimonas intestinavium
This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620168
ENA-FIRST-PUBLIC
2023-01-03
ENA-LAST-UPDATE
2023-01-03
External Id
SAMEA112285535
INSDC center alias
INRA-META
INSDC center name
Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public
2023-01-03T16:28:37Z
INSDC last update
2023-01-03T16:28:37Z
INSDC status
public
Submitter Id
chick45__bin14
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes 3.15.4
binning parameters
default parameters
binning software
SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
broad-scale environmental context
host-associated habitat
collection date
2016
completeness score
83.22
completeness software
checkm2 v0.1.3
contamination score
1.26
environmental medium
caecal content
geographic location (country and/or sea)
USA
geographic location (latitude)
39.768403
geographic location (longitude)
-86.158068
geographic location (region and locality)
Middle West
investigation type
metagenome-assembled genome
isolation_source
chicken caecal content
local environmental context
host-associated habitat
metagenomic source
chicken gut metagenome
project name
DSM US
sample derived from
ERS13620168
sample name
chick45__bin14
scientific_name
Candidatus Gallimonas intestinavium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach