marine metagenome
collection_date
2023-06-13T00:40:00Z
depth
0 m
env_broad_scale
7 Other
env_local_scale
7.2.1 Open ocean water-conservation
env_medium
Sea water [ENVO_00002149]
geo_loc_name
Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
lat_lon
32 S 115.4167 E
sample_id
102.100.100/403621
source_mat_id
http://hdl.handle.net/102.100.100/403621
sample_site_location_description
Rottnest Island
sample_submitter
Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_attribution
IMOS|CSIRO
funding_agency
IMOS|CSIRO
samp_collect_device
meth_1.4 (https://research.csiro.au/ambsm/)
samp_mat_process
meth_1.4 (https://research.csiro.au/ambsm/)
store_cond
meth_1.4 (https://research.csiro.au/ambsm/)
biotic_relationship
free living
general_env_feature
Marine - neritic (coastal off shore)
notes
collection_date:CTD SampleTime_UTC|CTD depth:1.0
sample_type
Pelagic
nucl_acid_ext
meth_3.1.9 (https://research.csiro.au/ambsm/)
dna_concentration_submitter
Not provided
dna_concentration_submitter_meth
Not provided
absorbance_260_280_ratio_submitter
Not provided
alkalinity
2311.34 μmol/kg
alkalinity_meth
meth_2.2 (https://research.csiro.au/ambsm/)
allo
0.016 mg/m3
allo_meth
meth_2.2 (https://research.csiro.au/ambsm/)
alpha_beta_car
0.019 mg/m3
alpha_beta_car_meth
meth_2.2 (https://research.csiro.au/ambsm/)
ammonium
0.13 μmol/L
ammonium_meth
meth_2.2 (https://research.csiro.au/ambsm/)
anth
below detection limit
anth_meth
meth_2.2 (https://research.csiro.au/ambsm/)
asta
below detection limit
asta_meth
meth_2.2 (https://research.csiro.au/ambsm/)
but_fuco
0.027 mg/m3
but_fuco_meth
meth_2.2 (https://research.csiro.au/ambsm/)
cantha
below detection limit
cantha_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_a
0.485 mg/m3
chlorophyll_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_b
0.05 mg/m3
chlorophyll_b_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c1
below detection limit
chlorophyll_c1_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c2
0.028 mg/m3
chlorophyll_c2_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c3
below detection limit
chlorophyll_c3_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_ctd
0.0343 mg/m3
chlorophyll_ctd_meth
meth_2.2 (https://research.csiro.au/ambsm/)
conductivity_aqueous
4.8854 S/m
conductivity_aqueous_meth
meth_2.2 (https://research.csiro.au/ambsm/)
cphlide_a
below detection limit
cphlide_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
density
1024.7477 kg/m3
density_meth
meth_2.2 (https://research.csiro.au/ambsm/)
diadino
0.018 mg/m3
diadino_meth
meth_2.2 (https://research.csiro.au/ambsm/)
diato
0.001 mg/m3
diato_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dino
below detection limit
dino_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_a_and_cphl_a
0.485 mg/m3
dv_cphl_a_and_cphl_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_a
below detection limit
dv_cphl_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_b_and_cphl_b
0.05 mg/m3
dv_cphl_b_and_cphl_b_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_b
below detection limit
dv_cphl_b_meth
meth_2.2 (https://research.csiro.au/ambsm/)
echin
below detection limit
echin_meth
meth_2.2 (https://research.csiro.au/ambsm/)
fluor
Not provided
fuco
0.071 mg/m3
fuco_meth
meth_2.2 (https://research.csiro.au/ambsm/)
gyro
below detection limit
gyro_meth
meth_2.2 (https://research.csiro.au/ambsm/)
hex_fuco
0.065 mg/m3
hex_fuco_meth
meth_2.2 (https://research.csiro.au/ambsm/)
imos_site_code
NRSROT
keto_hex_fuco
below detection limit
keto_hex_fuco_meth
meth_2.2 (https://research.csiro.au/ambsm/)
lut
below detection limit
lut_meth
meth_2.2 (https://research.csiro.au/ambsm/)
mg_dvp
below detection limit
mg_dvp_meth
meth_2.2 (https://research.csiro.au/ambsm/)
microbial_abundance
Not provided
microbial_abundance_meth
Not provided
neo
0.007 mg/m3
neo_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate
0.5 μmol/L
nitrate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate_nitrite
Not provided
nitrate_nitrite_meth
Not provided
nitrite
below detection limit
nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nrs_sample_code
ROT20230613_0
nrs_trip_code
ROT20230613
oxygen
224 μmol/L
oxygen_meth
meth_2.2 (https://research.csiro.au/ambsm/)
oxygen_ctd_vol
193 mL/L
oxygen_ctd_vol_meth
meth_2.2 (https://research.csiro.au/ambsm/)
par
Not provided
part_org_carb
Not provided
perid
0.006 mg/m3
perid_meth
meth_2.2 (https://research.csiro.au/ambsm/)
ph
Not provided
phide_a
below detection limit
phide_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
phosphate
0.14 μmol/L
phosphate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_a
below detection limit
phytin_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_b
below detection limit
phytin_b_meth
meth_2.2 (https://research.csiro.au/ambsm/)
picoeukaryotes
13794.5 cells/mL
picoeukaryotes_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pras
0.023 mg/m3
pras_meth
meth_2.2 (https://research.csiro.au/ambsm/)
prochlorococcus
10093.5 cells/mL
prochlorococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophide_a
below detection limit
pyrophide_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophytin_a
below detection limit
pyrophytin_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity
35.2084 PSU
salinity_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_lab
35.208 PSU
salinity_lab_meth
meth_2.2 (https://research.csiro.au/ambsm/)
samp_size
Not provided
samp_vol_we_dna_ext
Not provided
sample_volume_notes
Not provided
secchi_depth
13 m
secchi_depth_meth
meth_2.2 (https://research.csiro.au/ambsm/)
silicate
2.4 μmol/L
silicate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synechococcus
47223 cells/mL
synechococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synonyms
Not provided
temp
20.6657 degC
temp_meth
meth_2.2 (https://research.csiro.au/ambsm/)
tot_depth_water_col
Not provided
tot_nitro
Not provided
tot_phosp
Not provided
total_co2
2030.11 μmol/kg
total_co2_meth
meth_2.2 (https://research.csiro.au/ambsm/)
transmittance
Not provided
tss
0.6 mg/L
tss_meth
meth_2.2 (https://research.csiro.au/ambsm/)
turbidity
0.5689 NTU
turbidity_meth
meth_2.2 (https://research.csiro.au/ambsm/)
url
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403621
viola
0.004 mg/m3
viola_meth
meth_2.2 (https://research.csiro.au/ambsm/)
zea
0.03 mg/m3
zea_meth
meth_2.2 (https://research.csiro.au/ambsm/)
zooplankton_biomass
14.491 mg/m3
zooplankton_biomass_meth
meth_2.2int (https://research.csiro.au/ambsm/)
AustralianMicrobiome_metadata_defs_url
https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
isolation_source
Pelagic
isolate
102.100.100/403621_0
ncbi_txid
408172
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water