marine metagenome
collection_date
2022-06-16T04:08:00Z
depth
2 m
env_broad_scale
7 Other
env_local_scale
7.1.3 Coastal water-intensive use
env_medium
Sea water [ENVO_00002149]
geo_loc_name
Australia:Botany Bay [GAZ_00002797]
lat_lon
34.0068 S 151.1921 E
sample_id
102.100.100/142604
source_mat_id
http://hdl.handle.net/102.100.100/142604
sample_site_location_description
Towra Point - Botany Bay
sample_submitter
Shauna Murray[Shauna.Murray@uts.edu.au;https://orcid.org/0000-0001-7096-1307]
sample_attribution
UTS; CRC food agility; CSIRO; IMOS
funding_agency
UTS; CRC food agility; CSIRO; IMOS
samp_collect_device
meth_1.5.1 (https://research.csiro.au/ambsm/)
samp_mat_process
meth_1.5.1 (https://research.csiro.au/ambsm/)
store_cond
meth_1.5.1 (https://research.csiro.au/ambsm/)
biotic_relationship
free living
general_env_feature
Marine - neritic (coastal off shore)
notes
Not provided
sample_type
Coastal water
nucl_acid_ext
meth_3.1.9 (https://research.csiro.au/ambsm/)
dna_concentration_submitter
19.2 ng/μL
dna_concentration_submitter_meth
meth_3.3.3 (https://research.csiro.au/ambsm/)
absorbance_260_280_ratio_submitter
-9999
alkalinity
not collected
ammonium
0.2 μmol/L
ammonium_meth
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_a
not collected
chlorophyll_a_meth
Not provided
chlorophyll_ctd
not collected
coastal_id
Not provided
conductivity_aqueous
not collected
fluor
not collected
fluor_meth
Not provided
imos_site_code
CSTRP
microbial_abundance
1767844 cells/mL
microbial_abundance_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate
not collected
nitrate_meth
Not provided
nitrate_nitrite
0.1 μmol/L
nitrate_nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrite
below detection limit
nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
oxygen
not collected
oxygen_meth
Not provided
par
not collected
par_meth
Not provided
part_org_carb
not collected
part_org_carb_meth
Not provided
ph
not collected
ph_meth
Not provided
phosphate
0.09 μmol/L
phosphate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
picoeukaryotes
34734 cells/mL
picoeukaryotes_meth
meth_2.2 (https://research.csiro.au/ambsm/)
prochlorococcus
351 cells/mL
prochlorococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity
not collected
salinity_meth
Not provided
salinity_lab
not collected
salinity_lab_meth
Not provided
samp_size
2 L
samp_vol_we_dna_ext
2 L
sample_volume_notes
Not provided
secchi_depth
not collected
secchi_depth_meth
Not provided
silicate
1.5 μmol/L
silicate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synechococcus
570 cells/mL
synechococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synonyms
TRP20220616_102.100.100/142604_2
temp
not collected
temp_meth
Not provided
tot_depth_water_col
not collected
tot_depth_water_col_meth
Not provided
tot_nitro
not collected
tot_nitro_meth
Not provided
tot_phosp
not collected
tot_phosp_meth
Not provided
transmittance
not collected
tss
not collected
tss_meth
Not provided
turbidity
not collected
turbidity_meth
Not provided
url
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/142604
AustralianMicrobiome_metadata_defs_url
https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
isolation_source
Coastal water
isolate
102.100.100/142604_2
ncbi_txid
408172
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water