marine metagenome
collection_date
2020-11-19T13:05:00Z
depth
2 m
env_broad_scale
7 Other
env_local_scale
7.1.3 Coastal water-intensive use
env_medium
Sea water [ENVO_00002149]
geo_loc_name
Australia:Botany Bay [GAZ_00002797]
lat_lon
34.0068 S 151.1921 E
sample_id
102.100.100/138654
source_mat_id
http://hdl.handle.net/102.100.100/138654
sample_site_location_description
Towra Point - Botany Bay
sample_submitter
Shauna Murray[Shauna.Murray@uts.edu.au;https://orcid.org/0000-0001-7096-1307]
sample_attribution
UTS; CRC food agility; CSIRO; IMOS
funding_agency
UTS; CRC food agility; CSIRO; IMOS
samp_collect_device
meth_1.5.1 (https://research.csiro.au/ambsm/)
samp_mat_process
meth_1.5.1 (https://research.csiro.au/ambsm/)
store_cond
meth_1.5.1 (https://research.csiro.au/ambsm/)
biotic_relationship
free living
general_env_feature
Marine - neritic (coastal off shore)
notes
Not provided
sample_type
Coastal water
nucl_acid_ext
meth_3.1.9 (https://research.csiro.au/ambsm/)
dna_concentration_submitter
not collected
dna_concentration_submitter_meth
Not provided
absorbance_260_280_ratio_submitter
-9999
alkalinity
not collected
alkalinity_meth
Not provided
allo
Not provided
allo_meth
Not provided
alpha_beta_car
Not provided
alpha_beta_car_meth
Not provided
ammonium
0.48 μmol/L
ammonium_meth
meth_2.2 (https://research.csiro.au/ambsm/)
anth
Not provided
anth_meth
Not provided
asta
Not provided
asta_meth
Not provided
but_fuco
Not provided
but_fuco_meth
Not provided
cantha
Not provided
cantha_meth
Not provided
chlorophyll_a
not collected
chlorophyll_a_meth
Not provided
chlorophyll_b
Not provided
chlorophyll_b_meth
Not provided
chlorophyll_c1
Not provided
chlorophyll_c1_meth
Not provided
chlorophyll_c2
Not provided
chlorophyll_c2_meth
Not provided
chlorophyll_c3
Not provided
chlorophyll_c3_meth
Not provided
chlorophyll_ctd
not collected
chlorophyll_ctd_meth
Not provided
conductivity_aqueous
not collected
conductivity_aqueous_meth
Not provided
cphlide_a
Not provided
cphlide_a_meth
Not provided
density
Not provided
density_meth
Not provided
diadino
Not provided
diadino_meth
Not provided
diato
Not provided
diato_meth
Not provided
dino
Not provided
dino_meth
Not provided
dv_cphl_a_and_cphl_a
Not provided
dv_cphl_a_and_cphl_a_meth
Not provided
dv_cphl_a
Not provided
dv_cphl_a_meth
Not provided
dv_cphl_b_and_cphl_b
Not provided
dv_cphl_b_and_cphl_b_meth
Not provided
dv_cphl_b
Not provided
dv_cphl_b_meth
Not provided
echin
Not provided
echin_meth
Not provided
fluor
not collected
fuco
Not provided
fuco_meth
Not provided
gyro
Not provided
gyro_meth
Not provided
hex_fuco
Not provided
hex_fuco_meth
Not provided
imos_site_code
CSTRP
keto_hex_fuco
Not provided
keto_hex_fuco_meth
Not provided
lut
Not provided
lut_meth
Not provided
mg_dvp
Not provided
mg_dvp_meth
Not provided
microbial_abundance
2903260 cells/mL
microbial_abundance_meth
meth_2.2 (https://research.csiro.au/ambsm/)
neo
Not provided
neo_meth
Not provided
nitrate
not collected
nitrate_meth
Not provided
nitrate_nitrite
1.4 μmol/L
nitrate_nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrite
below detection limit
nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nrs_sample_code
Not provided
nrs_trip_code
Not provided
oxygen
not collected
oxygen_meth
Not provided
oxygen_ctd_vol
Not provided
oxygen_ctd_vol_meth
Not provided
par
not collected
part_org_carb
not collected
perid
Not provided
perid_meth
Not provided
ph
not collected
phide_a
Not provided
phide_a_meth
Not provided
phosphate
0.23 μmol/L
phosphate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_a
Not provided
phytin_a_meth
Not provided
phytin_b
Not provided
phytin_b_meth
Not provided
picoeukaryotes
27523 cells/mL
picoeukaryotes_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pras
Not provided
pras_meth
Not provided
prochlorococcus
11960 cells/mL
prochlorococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophide_a
Not provided
pyrophide_a_meth
Not provided
pyrophytin_a
Not provided
pyrophytin_a_meth
Not provided
salinity
not collected
salinity_meth
Not provided
salinity_lab
not collected
salinity_lab_meth
Not provided
samp_size
2 L
samp_vol_we_dna_ext
2 L
sample_volume_notes
Not provided
secchi_depth
not collected
secchi_depth_meth
Not provided
silicate
0.3 μmol/L
silicate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synechococcus
17436 cells/mL
synechococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synonyms
TRP20201119_102.100.100/138654_2
temp
22.3 degC
temp_meth
-9999
tot_depth_water_col
not collected
tot_nitro
not collected
tot_phosp
not collected
total_co2
Not provided
total_co2_meth
Not provided
transmittance
not collected
tss
not collected
tss_meth
Not provided
turbidity
not collected
turbidity_meth
Not provided
url
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138654
viola
Not provided
viola_meth
Not provided
zea
Not provided
zea_meth
Not provided
zooplankton_biomass
Not provided
zooplankton_biomass_meth
Not provided
AustralianMicrobiome_metadata_defs_url
https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
isolation_source
Coastal water
isolate
102.100.100/138654_2
ncbi_txid
408172
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water