uncultured Muribaculaceae bacterium
ENA-FIRST-PUBLIC
2023-02-03
ENA-LAST-UPDATE
2023-02-03
External Id
SAMEA112409299
INSDC center alias
UNIVERSITY OF CAMBRIDGE
INSDC center name
UNIVERSITY OF CAMBRIDGE
INSDC first public
2023-02-03T00:46:02Z
INSDC last update
2023-02-03T00:46:02Z
INSDC status
public
Submitter Id
MGBC136637
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.10.1
binning parameters
default parameters, kmer: 4
binning software
metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
broad-scale environmental context
mouse gut
collection date
not provided
completeness score
78.87
completeness software
CheckM
contamination score
0.19
environmental medium
Faeces
geographic location (country and/or sea)
USA
geographic location (latitude)
40.07127
geographic location (longitude)
-75.09098
investigation type
metagenome-assembled genome
isolation_source
feces
local environmental context
mouse-associated habitat
metagenomic source
mouse gut metagenome
project name
Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample derived from
SRR7761320
sample name
MGBC136637
scientific_name
uncultured Muribaculaceae bacterium
sequencing method
Illumina
taxonomic identity marker
multi-marker approach