Faecalibaculum rodentium
ENA-FIRST-PUBLIC
2023-02-03
ENA-LAST-UPDATE
2023-02-03
External Id
SAMEA112411289
INSDC center alias
UNIVERSITY OF CAMBRIDGE
INSDC center name
UNIVERSITY OF CAMBRIDGE
INSDC first public
2023-02-03T00:47:00Z
INSDC last update
2023-02-03T00:47:00Z
INSDC status
public
Submitter Id
MGBC140374
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit_v1.1.1-2-g02102e1
binning parameters
default parameters, kmer: 4
binning software
metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
broad-scale environmental context
mouse gut
collection date
not provided
completeness score
96.70
completeness software
CheckM
contamination score
3.23
environmental medium
Faeces
geographic location (country and/or sea)
China
geographic location (latitude)
31.48512
geographic location (longitude)
120.26734
investigation type
metagenome-assembled genome
isolation_source
feces
local environmental context
mouse-associated habitat
metagenomic source
mouse gut metagenome
project name
Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample derived from
SRR10120758
sample name
MGBC140374
scientific_name
Faecalibaculum rodentium
sequencing method
Illumina
taxonomic identity marker
multi-marker approach