marine metagenome
collection_date
2022-08-02T00:00:00Z
depth
25 m
env_broad_scale
7 Other
env_local_scale
7.2.1 Open ocean water-conservation
env_medium
Sea water [ENVO_00002149]
geo_loc_name
Australia:East Australian Current [GAZ_00000352]
lat_lon
34.1192 S 151.2267 E
sample_id
102.100.100/403278
source_mat_id
http://hdl.handle.net/102.100.100/403278
sample_site_location_description
Port Hacking
sample_submitter
Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_attribution
IMOS|CSIRO
funding_agency
IMOS|CSIRO
samp_collect_device
meth_1.4 (https://research.csiro.au/ambsm/)
samp_mat_process
meth_1.4 (https://research.csiro.au/ambsm/)
store_cond
meth_1.4 (https://research.csiro.au/ambsm/)
biotic_relationship
free living
general_env_feature
Marine - neritic (coastal off shore)
notes
collection_date:CTD SampleTime_UTC|CTD depth:24.82
sample_type
Pelagic
nucl_acid_ext
meth_3.1.9 (https://research.csiro.au/ambsm/)
dna_concentration_submitter
Not provided
dna_concentration_submitter_meth
Not provided
absorbance_260_280_ratio_submitter
Not provided
alkalinity
Not provided
alkalinity_meth
Not provided
allo
Not provided
allo_meth
Not provided
alpha_beta_car
Not provided
alpha_beta_car_meth
Not provided
ammonium
0.14 μmol/L
ammonium_meth
meth_2.2 (https://research.csiro.au/ambsm/)
anth
Not provided
anth_meth
Not provided
asta
Not provided
asta_meth
Not provided
but_fuco
Not provided
but_fuco_meth
Not provided
cantha
Not provided
cantha_meth
Not provided
chlorophyll_a
Not provided
chlorophyll_a_meth
Not provided
chlorophyll_b
Not provided
chlorophyll_b_meth
Not provided
chlorophyll_c1
Not provided
chlorophyll_c1_meth
Not provided
chlorophyll_c2
Not provided
chlorophyll_c2_meth
Not provided
chlorophyll_c3
Not provided
chlorophyll_c3_meth
Not provided
chlorophyll_ctd
0.9161 mg/m3
chlorophyll_ctd_meth
meth_2.2 (https://research.csiro.au/ambsm/)
conductivity_aqueous
4.6371 S/m
conductivity_aqueous_meth
meth_2.2 (https://research.csiro.au/ambsm/)
cphlide_a
Not provided
cphlide_a_meth
Not provided
density
1025.3707 kg/m3
density_meth
meth_2.2 (https://research.csiro.au/ambsm/)
diadino
Not provided
diadino_meth
Not provided
diato
Not provided
diato_meth
Not provided
dino
Not provided
dino_meth
Not provided
dv_cphl_a_and_cphl_a
Not provided
dv_cphl_a_and_cphl_a_meth
Not provided
dv_cphl_a
Not provided
dv_cphl_a_meth
Not provided
dv_cphl_b_and_cphl_b
Not provided
dv_cphl_b_and_cphl_b_meth
Not provided
dv_cphl_b
Not provided
dv_cphl_b_meth
Not provided
echin
Not provided
echin_meth
Not provided
fluor
Not provided
fuco
Not provided
fuco_meth
Not provided
gyro
Not provided
gyro_meth
Not provided
hex_fuco
Not provided
hex_fuco_meth
Not provided
imos_site_code
NRSPHB
keto_hex_fuco
Not provided
keto_hex_fuco_meth
Not provided
lut
Not provided
lut_meth
Not provided
mg_dvp
Not provided
mg_dvp_meth
Not provided
microbial_abundance
Not provided
microbial_abundance_meth
Not provided
neo
Not provided
neo_meth
Not provided
nitrate
1 μmol/L
nitrate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate_nitrite
Not provided
nitrate_nitrite_meth
Not provided
nitrite
0.23 μmol/L
nitrite_meth
meth_2.2 (https://research.csiro.au/ambsm/)
nrs_sample_code
PHB20220802_25
nrs_trip_code
PHB20220802
oxygen
Not provided
oxygen_meth
Not provided
oxygen_ctd_vol
216.2189 mL/L
oxygen_ctd_vol_meth
meth_2.2 (https://research.csiro.au/ambsm/)
par
Not provided
part_org_carb
Not provided
perid
Not provided
perid_meth
Not provided
ph
Not provided
phide_a
Not provided
phide_a_meth
Not provided
phosphate
0.14 μmol/L
phosphate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_a
Not provided
phytin_a_meth
Not provided
phytin_b
Not provided
phytin_b_meth
Not provided
picoeukaryotes
8363 cells/mL
picoeukaryotes_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pras
Not provided
pras_meth
Not provided
prochlorococcus
2715.5 cells/mL
prochlorococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophide_a
Not provided
pyrophide_a_meth
Not provided
pyrophytin_a
Not provided
pyrophytin_a_meth
Not provided
salinity
35.0951 PSU
salinity_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_lab
35.103 PSU
salinity_lab_meth
meth_2.2 (https://research.csiro.au/ambsm/)
samp_size
Not provided
samp_vol_we_dna_ext
Not provided
sample_volume_notes
Not provided
secchi_depth
13 m
secchi_depth_meth
meth_2.2 (https://research.csiro.au/ambsm/)
silicate
1.1 μmol/L
silicate_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synechococcus
3323 cells/mL
synechococcus_meth
meth_2.2 (https://research.csiro.au/ambsm/)
synonyms
Not provided
temp
18.3481 degC
temp_meth
meth_2.2 (https://research.csiro.au/ambsm/)
tot_depth_water_col
Not provided
tot_nitro
Not provided
tot_phosp
Not provided
total_co2
Not provided
total_co2_meth
Not provided
transmittance
Not provided
tss
Not provided
tss_meth
Not provided
turbidity
0.1387 NTU
turbidity_meth
meth_2.2 (https://research.csiro.au/ambsm/)
url
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403278
viola
Not provided
viola_meth
Not provided
zea
Not provided
zea_meth
Not provided
zooplankton_biomass
3.5116 mg/m3
zooplankton_biomass_meth
meth_2.2int (https://research.csiro.au/ambsm/)
AustralianMicrobiome_metadata_defs_url
https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
isolation_source
Pelagic
isolate
102.100.100/403278_25
ncbi_txid
408172
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.water