uncultured Sulfurimonas sp.
co-assembly MAG sample from the genus Sulfurimonas (phylum Campylobacterota) from deep-sea non-buoyant hydrothermal plumes
ENA-FIRST-PUBLIC
2023-01-20
ENA-LAST-UPDATE
2023-01-20
External Id
SAMEA112344838
INSDC center alias
Max Planck Institute for Marine Microbiology
INSDC center name
Max Planck Institute for Marine Microbiology
INSDC first public
2023-01-20T16:45:12Z
INSDC last update
2023-01-20T16:45:12Z
INSDC status
public
Submitter Id
gfbio:5b2486fd-7a52-43bb-ac9f-77a93784ed55:mag2
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
SPAdes (--meta -k 21,33,55,77,99,127; v3.9.0) / MEGAHIT (--min-contig-len 1000; v1.1.2)
binning parameters
kmer frequencies, coverage
binning software
CONCOCT (v1.1.0)
broad-scale environmental context
oceanic abissopelagic zone biome [ENVO:01000038]
broker name
German Federation for Biological Data (GFBio)
collection date
not provided
completeness score
98.28
completeness software
CheckM
contamination score
1.72
environmental medium
sea water [ENVO:00002149]
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
geographic location (region and locality)
Central Atlantic Ocean
investigation type
metagenome-assembled genome
isolation_source
sediment metagenome from deep-sea non-buoyant hydrothermal plumes
local environmental context
hydrothermal plume [ENVO:01000130]
metagenomic source
sediment metagenome
project name
hydrothermal plumes Gakkel Ridge
sample derived from
ERR7132539-ERR7132550
sample name
gfbio:5b2486fd-7a52-43bb-ac9f-77a93784ed55:mag2
sequencing method
Illumina MiSeq
taxonomic identity marker
16S and multi-marker