10ad6d16-32e7-4d73-8673-ff1e3d5331b4-asg-MAGScoT_cleanbin_000068
Desulfosarcinaceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-10-16T19:03:49Z
ENA-LAST-UPDATE
2023-10-16T19:03:49Z
External Id
SAMEA114501946
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center alias
Tree of Life Programme
INSDC center name
tree of life programme
INSDC first public
2023-10-16T19:03:49Z
INSDC last update
2023-10-16T19:03:49Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
10ad6d16-32e7-4d73-8673-ff1e3d5331b4
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2021-10-02
completeness score
99.35
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.61
culture_or_strain_id
NARRIV strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
stratified brackish river anoxic sediment
host life stage
vegetative cell
host scientific name
Metopus sp. strain NARRIV
host taxid
2980491
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Metopus sp. strain NARRIV
local environmental context
estuarine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
52
organism part
WHOLE ORGANISM
original collection date
2019-08-26
original collection location
USA | RHODE ISLAND | NARRAGANSETT | NARROW RIVER
original geographic location (latitude)
41.502028
original geographic location (longitude)
-71.450139
project name
ASG
sample collection device or method
multicore sampler
sample derived from
SAMEA114501746
sample name
10ad6d16-32e7-4d73-8673-ff1e3d5331b4
scientific_name
Desulfosarcinaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000022
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
piMetSpef1.Desulfosarcinaceae_1