B_fev15_B2_3
seawater metagenome
ENA first public
2024-01-01
External Id
SAMEA114389376
INSDC center name
Ifremer
INSDC last update
2023-09-15T12:49:39Z
INSDC status
public
Submitter Id
sam_SEBSD10B32
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
broker name
SeBiMER
collecting institution
IFREMER
collection date
2020-02-15
common name
seawater metagenome
environment (biome)
lagoon
environment (feature)
coastal sea water
environment (material)
Filtered surface seawater
environmental package
none
environmental_sample
Yes
geographic location (country and/or sea)
New Caledonia
geographic location (depth)
1 m
geographic location (latitude)
166.32156790942622
geographic location (longitude)
-22.32102130006638
geographic location (region and locality)
Grand Noumea
investigation type
bacteria_archaea
isolation_source
Seawater surface of New Caledonia lagoon
multiplex identifiers
ATTTGT
pcr primers
515F-Y : 5'-GTGYCAGCMGCCGCGGTAA-3' ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3'
project name
searse
sample name
sam_SEBSD10B32
sample_description
Bacteria in water sample of station B2 in february 15, 2020, pre-filtered on 20m and then filtered on 3m
sample_name
SEBSD10B32
scientific_name
seawater metagenome
sequencing method
Sequencing by synthesis (Illumina)
target gene
16S rRNA
target subfragment
V4-V5