2021-W48 Kalmar Amplified SARS-CoV-2 RNA from wastewater
wastewater metagenome
ENA-FIRST-PUBLIC
2023-04-05T18:29:14Z
ENA-LAST-UPDATE
2023-05-02T19:28:11Z
External Id
SAMEA112879376
INSDC center name
Swedish University of Agricultural Sciences
INSDC first public
2023-04-05T18:29:14Z
INSDC last update
2023-05-02T19:28:11Z
INSDC status
public
Submitter Id
seec_wastewater_is_170_010
amount or size of sample collected
0.5
area of sampling site
not provided
collection date
2021-11-29
geographic location (country and/or sea)
Sweden
geographic location (latitude)
56.65946
geographic location (longitude)
16.31231
geographic location (region and locality)
Kalmar
investigation type
virus
name of the sampling site
Kalmarsundsverket
nucleic acid amplification
Ion AmpliSeq SARS-CoV-2 Insight Research Assay with SuperScript™ VILO™ cDNA Synthesis Kit using Ion Chef™ (Thermo Fisher, # A51306, # 11754050, # MAN0019277, Rev B.0, pp. 3-4, # MAN0024915 Rev B.0, Ch 4, pp. 42-43)
nucleic acid extraction
TNA concentration using Maxwell RSC Enviro Total Nucleic Acid Kit (Promega, # AS1831 & # TM663 Rev 4/22)
population size of the catchment area
65000
receipt date
2021-12-01
sample name
seec_wastewater_is_170_010
sample storage duration
1
sample storage location
not provided
sample transportation date
2021-11-30
sample transportation time
1
sampling time point
24 hour period, using a flow compensated sampler
scientific_name
wastewater metagenome
sewage type
wastewater treatment plant (municipal)
size of the catchment area
not provided
surveillance target
2697049
surveillance target (scientific name)
Severe acute respiratory syndrome coronavirus 2