2021-W44 Örebro Amplified SARS-CoV-2 RNA from wastewater
wastewater metagenome
ENA-FIRST-PUBLIC
2023-04-05T18:29:14Z
ENA-LAST-UPDATE
2023-05-02T19:28:11Z
External Id
SAMEA112879370
INSDC center name
Swedish University of Agricultural Sciences
INSDC first public
2023-04-05T18:29:14Z
INSDC last update
2023-05-02T19:28:11Z
INSDC status
public
Submitter Id
seec_wastewater_is_170_003
amount or size of sample collected
0.5
area of sampling site
not provided
collection date
2021-11-01
geographic location (country and/or sea)
Sweden
geographic location (latitude)
63.80482
geographic location (longitude)
20.2922
geographic location (region and locality)
Örebro
investigation type
virus
name of the sampling site
Skebäcks reningsverk
nucleic acid amplification
Ion AmpliSeq SARS-CoV-2 Insight Research Assay with SuperScript™ VILO™ cDNA Synthesis Kit using Ion Chef™ (Thermo Fisher, # A51306, # 11754050, # MAN0019277, Rev B.0, pp. 3-4, # MAN0024915 Rev B.0, Ch 4, pp. 42-43)
nucleic acid extraction
TNA concentration using Maxwell RSC Enviro Total Nucleic Acid Kit (Promega, # AS1831 & # TM663 Rev 4/22)
population size of the catchment area
150000
receipt date
2021-11-03
sample name
seec_wastewater_is_170_003
sample storage duration
1
sample storage location
not provided
sample transportation date
2021-11-02
sample transportation time
1
sampling time point
24 hour period, using a flow compensated sampler
scientific_name
wastewater metagenome
sewage type
wastewater treatment plant (municipal)
size of the catchment area
not provided
surveillance target
2697049
surveillance target (scientific name)
Severe acute respiratory syndrome coronavirus 2