Fram Strait water column MAG - FRAM_RAS_EGC1617_bin5
uncultured Colwellia sp.
ENA first public
2024-04-10
External Id
SAMEA14028511
INSDC center name
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC last update
2022-04-10T07:15:27Z
INSDC status
public
Submitter Id
FRAM_RAS_EGC1617_bin5
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Flye v2.8.3
binning parameters
Vamb was run in three different modes with the following parameters: set1 -l 32 -n 512 512, set2 -l 24 -n 384 384 and set3 -l 40 -n 768 768
binning software
Vamb v3.0.2
collection date
2017-05-26
completeness score
99.33
completeness software
CheckM v1.0.13
contamination score
1.55
environment (biome)
marine biome [ENVO:00000447]
environment (feature)
marine photic zone [ENVO:00000209]
environment (material)
sea water [ENVO:00002149]
geographic location (country and/or sea)
Arctic Ocean
geographic location (latitude)
78.83
geographic location (longitude)
-2.79
investigation type
metagenome
isolation_source
sea water
metagenomic source
marine metagenome
project name
FRAM_RAS_EGC_metagenomes
sample derived from
ERS11624918,ERR9575718
sample name
FRAM_RAS_EGC1617_bin5
scientific_name
uncultured Colwellia sp.
sequencing method
PacBio Sequel II
taxonomic identity marker
16S gene and multi-marker approach