blank sample
sample_description
Blank sample amplified by Nested PCR.
broad-scale environmental context
not applicable
collection date
not collected
target gene
16S rRNA
geographic location (longitude)
missing: control sample
dev_stage
not applicable
isolate
not applicable
TARGETED_LOCI
16S rRNA
geographic location (country and/or sea)
missing: control sample
sample_name
Rem-T2n4
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
organism
blank sample
environmental package
host-associated
environmental_sample
yes
environmental medium
not applicable
geographic location (latitude)
missing: control sample
scientific_name
blank sample
common name
blank sample
target subfragment
V3V4
geographic location (region and locality)
missing: control sample
investigation type
bacteria_archaea
pcr primers
WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3
local environmental context
not applicable
project name
rimicaris_juveniles
sequencing method
Sequencing by synthesis (Illumina)
collecting institution
ifremer
multiplex identifiers
ACATAT
tissue_type
not applicable
isolation_source
missing: control sample
ENA-LAST-UPDATE
2024-01-12