bacterium
ENA first public
2024-01-01
External Id
SAMEA113936461
INSDC center name
ifremer
INSDC last update
2023-06-23T10:08:36Z
INSDC status
public
Submitter Id
sam_OSTREO23
TARGETED_LOCI
16S rRNA
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCTACGGRAGGCAGCAG-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCTTACCAGGGTATCTAATCCT-3'
broker name
SeBiMER
collection date
2018-07-19
common name
bacterium
environment (biome)
algal bloom
environment (feature)
small creek
environment (material)
seawater
environmental package
none
environmental_sample
Yes
geographic location (country and/or sea)
France
geographic location (depth)
0-0.5m
geographic location (latitude)
43.693008
geographic location (longitude)
7.308794
geographic location (region and locality)
Mediterranean Sea
investigation type
bacteria_archaea
isolation_source
Samples were collected in a small creek of the Villefranche Bay (Rochambeau), French Mediterranean coast
nitrate
1.446 micromol/L
pcr primers
343F : 5'-TACGGRAGGCAGCAG-3' ; 784R : 5'-TACCAGGGTATCTAATCCT-3'
phosphate
0.055 micromol/L
project name
OSTREOPSIS
salinity
39 psu
sample name
sam_OSTREO23
sample_description
Bacteria associated with Ostreopsis - Fraction: free - Replicate: replicate_2
sample_name
OSTREO23
scientific_name
bacterium
sequencing method
Sequencing by synthesis (Illumina)
target gene
16S rRNA
target subfragment
V3-V4 region
temperature
26