bacterium
geographic location (depth)
0-0.5m
environment (material)
seawater
sample_description
Bacteria associated with Ostreopsis - Fraction: free - Replicate: replicate_3
collection date
2018-08-09
target gene
16S rRNA
geographic location (longitude)
7.308794
nitrate
3.028 micromol/L
temperature
28
TARGETED_LOCI
16S rRNA
environment (biome)
algal bloom
environment (feature)
small creek
geographic location (country and/or sea)
France
sample_name
OSTREO36
salinity
40 psu
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCTACGGRAGGCAGCAG-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCTTACCAGGGTATCTAATCCT-3'
organism
bacterium
environmental package
none
environmental_sample
Yes
phosphate
0.033 micromol/L
geographic location (latitude)
43.693008
scientific_name
bacterium
common name
bacterium
target subfragment
V3-V4 region
geographic location (region and locality)
Mediterranean Sea
investigation type
bacteria_archaea
pcr primers
343F : 5'-TACGGRAGGCAGCAG-3' ; 784R : 5'-TACCAGGGTATCTAATCCT-3'
project name
OSTREOPSIS
sequencing method
Sequencing by synthesis (Illumina)
isolation_source
Samples were collected in a small creek of the Villefranche Bay (Rochambeau), French Mediterranean coast
ENA-LAST-UPDATE
2023-06-23