Maridesulfovibrio sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-10-16T16:43:54Z
ENA-LAST-UPDATE
2023-10-16T16:43:54Z
External Id
SAMEA114501190
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center alias
Tree of Life Programme
INSDC center name
tree of life programme
INSDC first public
2023-10-16T16:43:54Z
INSDC last update
2023-10-16T16:43:54Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
193f683b-19ab-4efb-81d9-8b4726c9d081
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2022-09-02
completeness score
60.14
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.04
culture_or_strain_id
JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
salt marsh sediment
host life stage
vegetative cell
host scientific name
Plagiopyla sp. strain JUDRED
host taxid
2980486
identified_by
ANNA SCHRECENGOST
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Plagiopyla sp. strain JUDRED
local environmental context
marine salt marsh biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
32
organism part
WHOLE ORGANISM
original collection date
2022-03-21
original collection location
USA | RHODE ISLAND | NARRAGANSETT | POINT JUDITH POND
original geographic location (latitude)
41.380694
original geographic location (longitude)
-71.501028
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114501183
sample name
193f683b-19ab-4efb-81d9-8b4726c9d081
scientific_name
Maridesulfovibrio sp.
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000031
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piPlaSpeb1.Maridesulfovibrio_sp_3