seawater metagenome
ENA first public
2024-01-01
External Id
SAMEA114389333
INSDC center name
Ifremer
INSDC last update
2023-09-15T12:49:39Z
INSDC status
public
Submitter Id
sam_SEAS7B36
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
broker name
SeBiMER
collecting institution
IFREMER
collection date
2019-09-25
common name
seawater metagenome
environment (biome)
lagoon
environment (feature)
coastal sea water
environment (material)
Filtered surface seawater
environmental package
none
environmental_sample
Yes
geographic location (country and/or sea)
New Caledonia
geographic location (depth)
1 m
geographic location (latitude)
166.677667
geographic location (longitude)
-22.313900
geographic location (region and locality)
Grand Noumea
investigation type
bacteria_archaea
isolation_source
Seawater surface of New Caledonia lagoon
multiplex identifiers
TATCAT
pcr primers
515F-Y : 5'-GTGYCAGCMGCCGCGGTAA-3' ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3'
project name
searse
sample name
sam_SEAS7B36
sample_description
Bacteria in water sample of station G in september 2019, pre-filtered on 3m and then filtered on 0.2m
sample_name
SEAS7B36
scientific_name
seawater metagenome
sequencing method
Sequencing by synthesis (Illumina)
target gene
16S rRNA
target subfragment
V4-V5