pancrustacean metagenome
ENA first public
2024-01-01
External Id
SAMEA115099196
INSDC center name
Ifremer
INSDC last update
2024-01-12T10:52:22Z
INSDC status
public
Submitter Id
sam_Rem-201-Br-Juv14C
TARGETED_LOCI
16S rRNA
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
broad-scale environmental context
hydrothermal vent
broker name
SeBiMER
collecting institution
ifremer
collection date
2018-02
common name
crustacean metagenome
depth
3460
dev_stage
stage B
environmental medium
organ
environmental package
host-associated
environmental_sample
yes
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
23.37
geographic location (longitude)
-44.95
geographic location (region and locality)
Mid-Atlantic Ridge
investigation type
bacteria_archaea
isolate
Juv14C
isolation_source
hydrothermal vent
local environmental context
arthropoda
multiplex identifiers
TCCAGA
pcr primers
WHOI341 : 5'-CCTACGGGNGGCWGCAG-3 ; WHOI785 : 5-GACTACHVGGGTATCTAATCC-3
project name
rimicaris_juveniles
sample name
sam_Rem-201-Br-Juv14C
sample_description
16S partial rRNA (V3-V4) of Rimicaris exoculata gills symbionts, stage B from Snake Pit, amplified by Direct PCR.
sample_name
Rem-201-Br-Juv14C
scientific_name
crustacean metagenome
sequencing method
Sequencing by synthesis (Illumina)
target gene
16S rRNA
target subfragment
V3V4
tissue_type
gills