seawater metagenome
geographic location (depth)
1 m
barometric pressure
0
sample_description
Protists in water sample of station H in september 2019, pre-filtered on 20m and then filtered on 3m
host scientific name
0
target gene
18S rRNA
geographic location (longitude)
-22.400583
encoded traits
0
dev_stage
0
LIBRARY_CONSTRUCTION_PROTOCOL
0
chemical administration
0
conductivity
0
fluorescence
0
cell_line
0
humidity
0
TARGETED_LOCI
0
health or disease status of specific host
0
sample_name
SEAS8P19
strain
0
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
germline
0
organism
seawater metagenome
wind speed
0
wind direction
0
scientific_name
seawater metagenome
pressure
0
geographic location (region and locality)
Grand Noumea
investigation type
eukaryote
total depth of water column
0
pollutants
0
genotype
0
ploidy
0
sodium
0
subspecific genetic lineage
0
project name
searse
sequencing method
Sequencing by synthesis (Illumina)
alkanility
0
environment (material)
Filtered surface seawater
aquaculture origin
0
collection date
2019-09-25
observed biotic relationship
0
perturbation
0
sample salinity
0
ANTIBODY
0
nitrate
0
tidal stage
0
total nitrogen
0
isolate
0
light intensity
0
trophic level
0
pH
0
temperature
0
relationship to oxygen
0
cell_type
0
ecotype
0
environment (biome)
lagoon
sample temperature
0
environment (feature)
coastal sea water
experimental factor
0
geographic location (country and/or sea)
New Caledonia
phenotype
0
salinity
0
environmental package
none
environmental_sample
Yes
sub_species
0
sex
0
phosphate
0
sub_strain
0
geographic location (latitude)
166.581883
known pathogenicity
0
common name
seawater metagenome
target subfragment
V4
solar irradiance
0
water current
0
pcr primers
V4f-PlaGe : 5'-CCAGCASCYGCGGTAATTCC-3' ; V4r-PlaGe : 5'-ACTTTCGTTCTTGATYRA-3'
carbon dioxyde
0
collector name
0
collecting institution
IFREMER
multiplex identifiers
CACTGT
tissue_type
0
age
0
isolation_source
Seawater surface of New Caledonia lagoon
ENA-LAST-UPDATE
2023-09-14