seawater metagenome
ENA first public
2024-01-01
External Id
SAMEA114389456
INSDC center name
Ifremer
INSDC last update
2023-09-15T12:49:40Z
INSDC status
public
Submitter Id
sam_SEBSD16P53
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
broker name
SeBiMER
collecting institution
IFREMER
collection date
2020-02-16
common name
seawater metagenome
environment (biome)
lagoon
environment (feature)
coastal sea water
environment (material)
Filtered surface seawater
environmental package
none
environmental_sample
Yes
geographic location (country and/or sea)
New Caledonia
geographic location (depth)
1 m
geographic location (latitude)
166.398436
geographic location (longitude)
-22.246611
geographic location (region and locality)
Grand Noumea
investigation type
eukaryote
isolation_source
Seawater surface of New Caledonia lagoon
multiplex identifiers
ACACCG
pcr primers
V4f-PlaGe : 5'-CCAGCASCYGCGGTAATTCC-3' ; V4r-PlaGe : 5'-ACTTTCGTTCTTGATYRA-3'
project name
searse
sample name
sam_SEBSD16P53
sample_description
Protists in water sample of station GR in february 16, 2020, pre-filtered on 3m and then filtered on 0.2m
sample_name
SEBSD16P53
scientific_name
seawater metagenome
sequencing method
Sequencing by synthesis (Illumina)
target gene
18S rRNA
target subfragment
V4