Methylophilaceae bacterium
assembly software
metaMDBG
habitat
marine, coldwater, rock wall
broad-scale environmental context
aquatic biome
host scientific name
Acanthascus dawsoni
collection date
2020-12-14
sample derived from
SAMEA115457903
geographic location (longitude)
-124.17
binning parameters
coverage; graph; hic-mapping
contamination score
0.33
collected_by
SALLY LEYS
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
26
host sex
not collected
specimen_id
GHC0000128
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
SALLY LEYS
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
Canada
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
organism
Methylophilaceae bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
ani_screen
host taxid
472225
completeness score
74.48
environmental medium
adult sponge tissue
geographic location (latitude)
49.30
scientific_name
Methylophilaceae bacterium
common name
boot sponge
organism part
WHOLE ORGANISM
geographic location (region and locality)
Edmonton | University of Alberta
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
University of Alberta
investigation type
metagenome-assembled genome
specimen_voucher
RD-OLP 01
local environmental context
marine benthic biome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
29.0
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
University of Alberta
tolid
ohAcaDaws1.Methylophilaceae_2
isolation_source
Sponge: Acanthascus dawsoni