uncultured Roseovarius sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
fde22e01-18c0-43d8-9862-eb9c591a2007
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
EUICHI HIROSE
collecting institution
UNIVERSITY OF THE RYUKYUS
collection date
2021-03-15
completeness score
97.51
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.43
depth
0.5
environmental medium
adult tunicate tissue
geographic location (country and/or sea)
Japan
geographic location (latitude)
26.70833333
geographic location (longitude)
127.8777778
geographic location (region and locality)
Okinawa|Motobu|Back Reef at Bise
habitat
Rubbles of dead coral branches
host life stage
adult
host scientific name
Trididemnum miniatum
host sex
hermaphrodite
host taxid
1128088
identified by
EUICHI HIROSE
identifier_affiliation
UNIVERSITY OF THE RYUKYUS
investigation type
metagenome-assembled genome
isolation_source
Tunicate: Trididemnum miniatum
local environmental context
marine benthic biome
metagenomic source
sea squirt metagenome
number of standard tRNAs extracted
43
organism part
WHOLE ORGANISM
project name
ASG
relationship
obligate symbiosis at least for host
sample derived from
SAMEA114297374
sample name
fde22e01-18c0-43d8-9862-eb9c591a2007
scientific_name
uncultured Roseovarius sp.
sequencing method
Pacbio Sequel II
specimen id
NSU0014201
specimen voucher
3
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ANI
tolid
kaTriMini1.Roseovarius_sp_1