uncultured Pseudomonadales bacterium
ENA first public
2024-01-25
INSDC center name
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status
public
Submitter Id
HER19_SIP_2000_bin_23
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
Megahit v1.2.9
binning parameters
MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 11
binning software
MetaWrap v1.3.2
broad-scale environmental context
marine biome [ENVO:00000447]
collection date
2019-08-03
completeness score
93.64
completeness software
CheckM v1.2
contamination score
0.86
environmental medium
sea water [ENVO:00002149]
geographic location (country and/or sea)
Canada
geographic location (latitude)
69.5646
geographic location (longitude)
-138.907
investigation type
metagenome
isolation_source
sea water
local environmental context
marine photic zone [ENVO:00000209]
metagenomic source
marine metagenome
project name
HER19_HER22_MetaG
sample derived from
ERS16475400,ERR12120021
sample name
HER19_SIP_2000_bin_23
scientific_name
uncultured Pseudomonadales bacterium
sequencing method
Illumina HiSeq3000
taxonomic identity marker
Multi-marker approach