uncultured Lachnospiraceae bacterium
ENA-FIRST-PUBLIC
2023-04-20
ENA-LAST-UPDATE
2023-04-20
External Id
SAMEA112913838
INSDC center alias
UNIVERSITY OF GENEVA
INSDC center name
UNIVERSITY OF GENEVA
INSDC first public
2023-04-20T20:20:08Z
INSDC last update
2023-04-20T20:20:08Z
INSDC status
public
Submitter Id
MGG02837_1680014835
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSpades_v3.13
binning parameters
default
binning software
metagenome_atlas_v2.3
broad-scale environmental context
Host-associated
collection date
not provided
completeness score
94.92
completeness software
checkM_v1.1
contamination score
0.63
environmental medium
Feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
Mouse digestive system
metagenomic source
mouse gut metagenome
project name
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2136562 of study ERP104415.
sample derived from
SAMEA104313009
sample name
MGG02837_1680014835
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach