uncultured Burkholderiaceae bacterium
ENA first public
2024-01-25
INSDC center name
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status
public
Submitter Id
HER22_SIP_1000_bin_25_1
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Megahit v1.2.9
binning parameters
MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 111
binning software
MetaWrap v1.3.2
broad-scale environmental context
marine biome [ENVO:00000447]
collection date
2022-07-18
completeness score
60.5
completeness software
CheckM v1.2
contamination score
1.77
environmental medium
sea water [ENVO:00002149]
geographic location (country and/or sea)
Canada
geographic location (latitude)
69.559
geographic location (longitude)
-138.9069
investigation type
metagenome
isolation_source
sea water
local environmental context
marine photic zone [ENVO:00000209]
metagenomic source
marine metagenome
project name
HER19_HER22_MetaG
sample derived from
ERS16475404,ERR12120025
sample name
HER22_SIP_1000_bin_25_1
scientific_name
uncultured Burkholderiaceae bacterium
sequencing method
Illumina NextSeq2000
taxonomic identity marker
Multi-marker approach