Rhodococcus qingshengii
assembly software
metaMDBG
habitat
Reef
broad-scale environmental context
aquatic biome
host scientific name
Phyllospongia foliascens
collection date
2020-09-23
sample derived from
SAMEA115457859
geographic location (longitude)
147.70
binning parameters
coverage; graph; hic-mapping
contamination score
0.0
collected_by
NICOLE WEBSTER
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
53
host sex
not collected
specimen_id
GHC0000113
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
NICOLE WEBSTER
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
Australia
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
organism
Rhodococcus qingshengii
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
ani_screen
host taxid
593584
completeness score
91.65
environmental medium
adult sponge tissue
geographic location (latitude)
18.91
scientific_name
Rhodococcus qingshengii
organism part
WHOLE ORGANISM
geographic location (region and locality)
Queensland | Great Barrier Reef | Davies Reef
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
AIMS
investigation type
metagenome-assembled genome
specimen_voucher
NOT PROVIDED
local environmental context
marine reef biome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
12.0
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
AIMS
tolid
odCarFoli1.Rhodococcus_qingshengii_1
isolation_source
Sponge: Carteriospongia foliascens