uncultured Sediminibacterium sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
2c5b54ad-a97b-4fa2-9bba-53ae91dce8e2
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
SALLY LEYS
collecting institution
University of Alberta
collection date
2021-03-05
completeness score
59.3
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
2.09
depth
0.01
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Canada
geographic location (latitude)
53.528618
geographic location (longitude)
-113.525646
geographic location (region and locality)
Edmonton | University of Alberta
habitat
freshwater culture dish
host life stage
juvenile
host scientific name
Eunapius fragilis
host sex
not collected
host taxid
91661
identified by
SALLY LEYS
identifier_affiliation
University of Alberta
investigation type
metagenome-assembled genome
isolation_source
Sponge: Eunapius fragilis
local environmental context
freshwater lake biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
23
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA114297939
sample name
2c5b54ad-a97b-4fa2-9bba-53ae91dce8e2
scientific_name
uncultured Sediminibacterium sp.
sequencing method
Pacbio Sequel II
specimen id
GHC0000127
specimen voucher
EuF OCL 01
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ANI
tolid
odEunFrag1.Sediminibacterium_sp_1