algal bloom metagenome
ENA first public
2024-01-26
INSDC center name
Ifremer
INSDC status
public
LIBRARY_CONSTRUCTION_PROTOCOL
Sequencing by synthesis (Illumina)
Submitter Id
sam_F1R1T2A
TARGETED_LOCI
16S rRNA
adapters
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
broad-scale environmental context
cyanobacterial bloom
broker name
SeBiMER
collecting institution
IFREMER, Rue de l'Ile d'Yeu 44000 Nantes FRANCE
collection date
2021-09-21
collector name
Oceane Reignier
common name
cyanobacteria bloom metagenome
depth
0.5
environmental medium
water
environmental package
water
environmental_sample
yes
geographic location (country and/or sea)
France
geographic location (latitude)
47.562508
geographic location (longitude)
-2.492130
geographic location (region and locality)
FRANCE, Morbihan, Muzillac
investigation type
metagenome
isolation_source
surface water
local environmental context
freshwater lake
multiplex identifiers
CCAAGC
nitrate
165
pH
8.3
pcr primers
515F : 5'-GTGYCAGCMGCCGCGGTAA-3 ; 926R : 5'-CCGYCAATTYMTTTRAGTTT-3
project name
demisel
salinity
0.1
sample name
sam_F1R1T2A
sample temperature
19
sample_description
Atttached living bacterial communities at F1 station during the post-bloom period- Replica 1
sample_name
F1R1T2A
scientific_name
algal bloom metagenome
sequencing method
Sequencing by synthesis (Illumina)
target gene
16S rRNA
target subfragment
V4-V5 hypervariable region of the 16S rRNA gene
temperature
19