uncultured Roseateles sp.
assembly software
metaMDBG
habitat
freshwater culture dish
broad-scale environmental context
aquatic biome
host scientific name
Eunapius fragilis
collection date
2021-03-05
sample derived from
SAMEA114297939
collected by
SALLY LEYS
geographic location (longitude)
-113.525646
binning parameters
coverage; graph; hic-mapping
contamination score
0.7
specimen voucher
EuF OCL 01
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
57
host sex
not collected
specimen id
GHC0000127
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
identified by
SALLY LEYS
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-08-23T09:39:05Z
ENA-LAST-UPDATE
2023-08-23T09:39:05Z
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
Canada
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
16S recovered
Yes
organism
uncultured Paucibacter sp.
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
taxonomic novelty determined using RED
host taxid
91661
completeness score
99.77
environmental medium
adult sponge tissue
geographic location (latitude)
53.528618
scientific_name
uncultured Paucibacter sp.
organism part
WHOLE ORGANISM
geographic location (region and locality)
Edmonton | University of Alberta
GAL_sample_id
NOT PROVIDED
host life stage
juvenile
identifier_affiliation
University of Alberta
investigation type
metagenome-assembled genome
local environmental context
freshwater lake biome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
0.01
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
collecting institution
University of Alberta
tolid
odEunFrag1.Paucibacter_sp_1
isolation_source
Sponge: Eunapius fragilis
ENA-FIRST-PUBLIC
2023-08-23
ENA-LAST-UPDATE
2023-08-23