EMOBON_ROSKOGO_So_1
marine sediment metagenome
ENA first public
2024-11-11
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00088
broad-scale environmental context
marine biome [ENVO:00000447];marine benthic biome[ENVO_01000024]
collection date
2021-08-26
depth
17
dna concentration
48.3
elevation
-17
environmental medium
sediment [ENVO:00002007]
geographic location (country and/or sea)
France
geographic location (latitude)
48.708333
geographic location (locality)
French part of the English Channel
geographic location (longitude)
-3.866
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
English Channel
library reads sequenced
49808546
local environmental context
shallow_marine_sediment_[ENVO:03000034]
mock_pr
DDC_AAAAOSDA_1_HMNJKDSX3.UDI201
nucleic acid amplification
metag
nucleic acid extraction
https://www.qiagen.com/us/products/discovery-and-translational-research/dna-rna-purification/dna-purification/microbial-dna/dneasy-powersoil-pro-kit?catno=47016
obs_id
ROSKOGO
pcr conditions
DNA Polymerase:taq Q5;NoPCRs:2;PCRvolume:30;Nocycles:10
pcr primers
metag
project name
EMOBON
relevant standard operating procedures
Prod_ILL_BqADN_NEBUII_151_v4; Bq NEB Next Ultra II
sample collection device
core
sample material processing
SoSOP2
sample name
EMOBON00088
sample storage location
SBR YD001 freezer 17
sample storage temperature
-80
scientific_name
marine sediment metagenome
sea surface temperature
17
sea surface temperature method
deduced from temperature measured at Estacade on 1/9/2021
sequence quality check
manual
sequence_batch
Batch1
sequence_batch_rundate
Batch1_220712
sequencing method
Illumina NovaSeq 6000
source material identifiers
EMOBON_ROSKOGO_So_210826_micro_1
status
sample
target gene
metag
target subfragment
metag
tidal stage
low
tidal stage information
ebb_tide
total depth of water column
18