0a92d966-aa36-4a31-86eb-99a778c259b8-asg-MAGScoT_cleanbin_000124
Smithellaceae bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
0a92d966-aa36-4a31-86eb-99a778c259b8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
IVAN CEPICKA
collecting institution
CHARLES UNIVERSITY
collection date
2021-09-17
completeness score
47.74
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.65
culture_or_strain_id
RAJCA strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.422
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
freshwater pond sediment
host life stage
vegetative cell
host scientific name
Heterometopus palaeformis
host taxid
5965
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Heterometopus palaeformis
local environmental context
small freshwater lake biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
25
organism part
WHOLE ORGANISM
original collection date
2013-04-21
original collection location
CROATIA | RACJA VAS
original geographic location (latitude)
45.426917
original geographic location (longitude)
14.095639
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114301908
sample name
0a92d966-aa36-4a31-86eb-99a778c259b8
scientific_name
Smithellaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000021
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ANI
tolid
piHetPala1.Smithellaceae_5