metabat2_XCR1_HOM_7868_bwa.60 MAG
Candidatus Gastranaerophilales bacterium
ENA first public
2024-05-09
External Id
SAMEA115146559
INSDC center name
The Roslin Institute (University of Edinburgh)
INSDC last update
2024-01-26T11:57:51Z
INSDC status
public
Submitter Id
metabat2_XCR1_HOM_7868_bwa.60 MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT
binning parameters
Default MetaBAT 2 parameters
binning software
MetaBAT 2
broad-scale environmental context
Gallus gallus
collection date
2021-09-15
completeness score
99.68
completeness software
CheckM2
contamination score
0.04
environmental medium
Caecal contents
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
55.86
geographic location (longitude)
-3.2
isolation_source
Caecal contents from a chicken (Gallus gallus)
local environmental context
Gastrointestinal tract microbiota
metagenomic source
chicken gut metagenome
project name
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample derived from
ERS16138932
sample name
metabat2_XCR1_HOM_7868_bwa.60 MAG
scientific_name
Candidatus Gastranaerophilales bacterium
taxonomic identity marker
GTDB-Tk