metabat2_pooled_hicanu.289
metagenome
ENA first public
2024-05-09
External Id
SAMEA114374101
INSDC center name
The Roslin Institute (University of Edinburgh)
INSDC last update
2023-09-12T14:08:40Z
INSDC status
public
Submitter Id
metabat2_pooled_hicanu.289
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
HiCanu
binning parameters
canu maxInputCoverage=100000 correctedErrorRate=0.105 genomeSize=5m batMemory=200 useGrid= -pacbio-hifi
binning software
MetaBAT 2
broad-scale environmental context
Gallus gallus
collection date
2021-09-15
completeness score
98.62
completeness software
CheckM2
contamination score
0.11
environmental medium
Caecal contents
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
55.86
geographic location (longitude)
-3.2
investigation type
metagenome
isolation_source
Caecal contents from a chicken (Gallus gallus)
local environmental context
Gastrointestinal tract microbiota
metagenomic source
chicken gut metagenome
project name
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample derived from
ERS16138939, ERS16138940, ERS16138921, ERS16138927
sample name
metabat2_pooled_hicanu.289
scientific_name
metagenome
sequencing method
Sequel IIe
taxonomic identity marker
None