metabat2_XCR1_HET_6748_bwa.79
metagenome
ENA first public
2024-05-09
External Id
SAMEA114374677
INSDC center name
The Roslin Institute (University of Edinburgh)
INSDC last update
2023-09-12T14:08:44Z
INSDC status
public
Submitter Id
metabat2_XCR1_HET_6748_bwa.79
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT
binning parameters
megahit--kmin-1pass --k-list 27,37,47,57,67,77,87 --min-contig-len 1000
binning software
MetaBAT 2
broad-scale environmental context
Gallus gallus
collection date
2021-09-15
completeness score
99.72
completeness software
CheckM2
contamination score
0
environmental medium
Caecal contents
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
55.86
geographic location (longitude)
-3.2
investigation type
metagenome
isolation_source
Caecal contents from a chicken (Gallus gallus)
local environmental context
Gastrointestinal tract microbiota
metagenomic source
chicken gut metagenome
project name
Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample derived from
ERS16138925
sample name
metabat2_XCR1_HET_6748_bwa.79
scientific_name
metagenome
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
None