PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance
Severe acute respiratory syndrome coronavirus 2
ENA-FIRST-PUBLIC
2023-02-04
ENA-LAST-UPDATE
2023-02-04
External Id
SAMEA112467466
INSDC center alias
University of Tartu, Estonia
INSDC center name
university of tartu, estonia
INSDC first public
2023-02-04T04:21:24Z
INSDC last update
2023-02-04T04:21:24Z
INSDC status
public
SUBMISSION_TOOL
ena-upload-cli v0.6.1 @ Galaxy
SUBMISSION_TOOL_VERSION
0.6.1
Submitter Id
Cov27914
collecting institution
University of Tartu KoroGenoEST3 consortium, Estonia
collection_date
2022-10-20
collector name
Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar
geographic location (country and/or sea)
Estonia
geographic location (latitude)
59.284
geographic location (longitude)
25.3053
geographic location (region and locality)
Northern Estonia
host age
25-29
host common name
human
host health state
not provided
host scientific name
Homo sapiens
host sex
male
host subject id
Cov27914
isolate
nan
sample capture status
active surveillance in response to outbreak
sample name
Cov27914
scientific_name
Severe acute respiratory syndrome coronavirus 2