ba4b1049-a8d3-47c4-85d1-bce99d39bcf6-asg-CL22
uncultured Mesonia sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-04-11T15:19:57Z
ENA-LAST-UPDATE
2023-11-20T15:49:20Z
External Id
SAMEA112889369
GAL
Queen Mary University of London
GAL_sample_id
QMUOL0000035
INSDC center name
Tree of Life Programme
INSDC first public
2023-04-11T15:19:57Z
INSDC last update
2023-11-20T15:49:20Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
ba4b1049-a8d3-47c4-85d1-bce99d39bcf6
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Hifiasm (version 0.16.1-r375)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph; hic-mapping
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
RALPH APPY
collecting institution
PORT OF LOS ANGELES
collection date
2021-09-23
completeness score
92.54
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.19
depth
0-2
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
34.10542
geographic location (longitude)
-119.12589
geographic location (region and locality)
California | Ventura County | Mugu Lagoon
habitat
salt marsh
host scientific name
Branchellion lobata
host taxid
375517
identified by
SHANA GOFFREDI
identifier_affiliation
OCCIDENTAL COLLEGE
investigation type
metagenome-assembled genome
isolation_source
Annelid: Branchellion lobata
lifestage
adult
local environmental context
marine salt marsh biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
39
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA112889360
sample name
ba4b1049-a8d3-47c4-85d1-bce99d39bcf6
sample same as
SAMEA11604894
scientific_name
uncultured Mesonia sp.
sequencing method
Pacbio Sequel II
sex
NOT COLLECTED
specimen id
QMOUL0000035
specimen voucher
SIO:BIC:A13684
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
wcBraLoba9.Mesonia_sp_1