d4bf1da2-0eca-4e49-9a45-938c545f41e7-asg-MAGScoT_cleanbin_000003
uncultured Acaryochloris sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2022-03-31
ENA last update
2022-03-31
ENA-FIRST-PUBLIC
2023-04-11T15:20:25Z
ENA-LAST-UPDATE
2023-11-21T12:27:39Z
External Id
SAMEA112889373
GAL
Marine Biological Association
GAL_sample_id
NOT PROVIDED
INSDC center alias
EarlhamInstitute
INSDC center name
Tree of Life Programme
INSDC first public
2023-04-11T15:20:25Z
INSDC last update
2023-11-21T12:27:39Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
d4bf1da2-0eca-4e49-9a45-938c545f41e7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Hifiasm (version 0.16.1-r375)
barcoding center
MARINE BIOLOGICAL ASSOCIATION
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
terrestrial biome
broker name
Collaborative Open Plant Omics broker account, Earlham Institute, Norwich
collected by
MICHAEL CUNLIFFE | NATHAN CHRISMAS | JOANNA HARLEY
collected_by
MICHAEL CUNLIFFE | NATHAN CHRISMAS | JOANNA HARLEY
collecting institution
MARINE BIOLOGICAL ASSOCIATION | MARINE BIOLOGICAL ASSOCIATION | NATURAL HISTORY MUSEUM
collection date
2021-09-21
completeness score
49.95
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
5.66
elevation
0-10
environmental medium
fungal thallus
geographic location (country and/or sea)
United Kingdom
geographic location (elevation)
0-10
geographic location (latitude)
50.318988
geographic location (longitude)
-4.226925
geographic location (region and locality)
Cornwall| Rame head
habitat
bed rock/cliff side
host scientific name
Lichina pygmaea
host taxid
157483
identified by
NATHAN CHRISMAS
identified_by
NATHAN CHRISMAS
identifier_affiliation
MARINE BIOGICIAL ASSOCIATION
investigation type
metagenome-assembled genome
isolation_source
Fungus: Lichina pygmaea
lifestage
not provided
local environmental context
bedrock
metagenomic source
fungus metagenome
number of standard tRNAs extracted
33
organism part
WHOLE ORGANISM
original collection date
2021-09-21
original collection location
United Kingdom | Cornwall| Rame head
project name
DTOL
sample derived from
SAMEA112889371
sample name
d4bf1da2-0eca-4e49-9a45-938c545f41e7
scientific_name
uncultured Acaryochloris sp.
sequencing method
Pacbio Sequel II
sex
NOT COLLECTED
specimen id
MBA-210921-076A
specimen voucher
NOT PROVIDED
specimen_id
MBA-210921-076A
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ANI
tolid
glLicPygm2.Acaryochloris_sp_1