coassembly-bin186
Agreia sp.
ENA first public
2024-09-12
INSDC center name
JIC
INSDC status
public
Submitter Id
coassembly-bin186
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT v1.2.6
binning parameters
default
binning software
MetaBAT v2.15
broad-scale environmental context
urban
collection date
2023
completeness score
94.13
completeness software
CheckM v1.2.0
contamination score
2.53
environmental medium
concrete, tree branch, growth chamber
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
52.622034
geographic location (longitude)
1.218095
isolation_source
concrete, tree branch, growth chamber
local environmental context
ground, forest, laboratory
metagenomic source
lichen metagenome
project name
Metagenomic libraries produced from intact thalli of Xanthoria parietina
sample derived from
ERS20849746,ERS20849745,ERS20849744,ERS20849743,ERS20849742,ERS20849740,ERS20849739,ERS20849738
sample name
coassembly-bin186
scientific_name
Agreia sp.