Chrysochromulina_group1_assembly
uncultured Chrysochromulina
ENA-FIRST-PUBLIC
2023-04-13
ENA-LAST-UPDATE
2023-04-13
External Id
SAMEA112194944
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2023-04-13T16:27:28Z
INSDC last update
2023-04-13T16:27:28Z
INSDC status
public
Submitter Id
Chrysochromulina_group1_assembly
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT
binning parameters
Coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
Freshwater lake
collection date
2018-04-25
completeness score
51.37
completeness software
BUSCO
contamination score
0
environmental medium
environmental material
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
48.846361
geographic location (longitude)
14.487639
isolation_source
Freshwater lake
local environmental context
Freshwater lake
metagenomic source
freshwater metagenome
project name
High resolution sampling of freshwater reservoir in Czech Republic (PRJEB52406)
sample derived from
ERS11712875
sample name
Chrysochromulina_group1_assembly
scientific_name
uncultured Chrysochromulina
taxonomic identity marker
multi-marker aproach