a140e372-9953-4c42-974b-e4a76fb95a89-asg-MAGScoT_cleanbin_000044
Gammaproteobacteria bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
a140e372-9953-4c42-974b-e4a76fb95a89
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
Manuel Maldonado
collecting institution
CEAB-CSIC
collection date
2021-02-01
completeness score
78.49
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
2.55
depth
11
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.67
geographic location (longitude)
2.80314
geographic location (region and locality)
Girona|Blanes
habitat
rocky bottom
host life stage
adult
host scientific name
Corticium candelabrum
host taxid
121492
identified by
Manuel Maldonado
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
isolation_source
Sponge: Corticium candelabrum
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA114299583
sample name
a140e372-9953-4c42-974b-e4a76fb95a89
scientific_name
Gammaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen id
GHC0000185
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
ooCorCand1.Gammaproteobacteria_3